All Classes

Class	Description
AbstractClassIdsOptionsQuery	simple abstract class that provides a common Definitions containing: IdsQueryParameterDef and ClassQueryParameterDef.
AbstractFileDeletions	Base class for managing the removal of files from disk.
AbstractLevel1Service	service level 1
AbstractLevel2Service	service level 2
AbstractSecurityFilter	overrides FilterDefinitionFactoryBean in order to construct our security filter in code and not in XML.
AbstractSessionMessage	InternalMessage implementations which carry relate to some Session bound event.
AbstractStatefulBean	Base bean implementation for stateful services.
AbstractStatsMessage	Published when some limit in user/group/session activity has been reached.
ACLEventListener	responsible for intercepting all pre-INSERT, pre-UPDATE, pre-DELETE, and post-LOAD events to apply access control.
ACLVoter	helper security interface for all decisions on access control
AdminAction	action for passing to SecuritySystem.runAsAdmin(AdminAction).
AdminImpl	Provides methods for administering user accounts, passwords, as well as methods which require special privileges.
AllEntitiesPseudoLogLoader<T extends ome.model.IObject>	EventLogLoader which iterates through each object model type (in no particular order) and returns each object from lowest to highest id.
AllEventsLogLoader
AllGroupsSecurityFilter	overrides FilterDefinitionFactoryBean in order to construct our security filter in code and not in XML.
AnnotatedWith	Query for Search which uses an example Annotation instance as the basis for comparison.
AttributeNewUserGroupBean	Handles the "*_attribute" specifiers from omero-server.properties.
AttributeSet	Specialized handling of all the attributes, multi or single valued.
AWTScaleService	Provides methods for scaling buffered images.
BasePolicy	Simple base class for Policy implementations which always returns true for BasePolicy.isRestricted(IObject) and always fails on BasePolicy.checkRestriction(IObject).
BasicACLVoter
BasicEventContext	EventContext implementation for use within the security system.
BasicMethodSecurity	Implementation of MethodSecurity which checks method security based on the RolesAllowed annotations of our implementation methods.
BasicSecuritySystem	simplest implementation of SecuritySystem.
BasicSecuritySystemReadOnly	Provides a group context check that does not rely on SQL to bypass interception by Hibernate.
BasicSecurityWiring	Responsible for logging users in and out via the Principal before and after the actual invocation of OMERO methods.
BasicSecurityWiring.CloseOnNoSessionContext
BeanHelper	Helper for all bean implementations.
BeanInstantiationGuard	Prevents creation of Spring beans based on read-only status.
BeanInstantiationSubstituter	Adjusts instantiation class of Spring beans based on read-only status.
BinaryAccessPolicy	Policy which should be checked anytime access to original binary files in OMERO is being attempted.
BioFormatsConfigInit	Propagate the server's Bio-Formats version metadata into corresponding keys in the configuration service.
BlobShareStore	Implements ShareStore and provides functionality to work with binary Ice data from the share.
BridgeHelper	Deprecated.
CacheFactory
CacheListener	Basic CacheEventListener which does nothing.
ChangeSecurityContextEvent	InternalMessage published by the SessionManager when setSecurityContext() is called.
ChmodStrategy	Strategy for changing the permissions of objects in the database as well as verifying that the permissions for the modified objects are sensible after the change.
ClassQuerySource	creates a query based on the id string by interpreting it as a Class.
CollectionCountQueryDefinition	counts the number of members in a collection.
CollectionQueryParameterDef	extension of QueryParameterDef which restricts the type to a Collection, and specifies the element types of that Collection.
Complement	Complement SearchAction which combines two other search actions into one logical unit, e.g.
CompositeACLVoter
CompressImpl
ConfigImpl	implementation of the IConfig service interface.
ConfigurablePasswordProvider	Base class for most PasswordProvider implementations, providing configuration for default behaviors.
ContextMessage
ContextMessage.Pop	Published when an internal service is finished with the context previously signaled through publishing a ContextMessage.Push.
ContextMessage.Push	Published when an internal service would like to modify the current EventContext.
CounterFactory	Factory for creating counter objects.
CreateSessionMessage	Published after a successful session creation.
CurrentDetails	Stores information related to the security context of the current thread.
CurrentSessionContext	Implementation of Hibernate's current_session_context_class extension point.
CurrentSessionStats	Wrapper which delegates to a SessionStats instance acquired during construction.
DatabaseIdentity	Represents the unique identity of this database, consisting of the omero.db.authority and omero.db.uuid properties.
DBEnumCheck	Hook run by the context to guarantee that various enumerations are up to date.
DBMappedEnumCheck	When a new version of the OMERO server starts up check that the database includes an enumeration instance for every value mapped for code generation.
DBPatchCheck	Hook run by the context.
DBUnicodeUnitsCheck	Checks that the database contains correctly encoded enumerations for units of measure.
DBUserCheck	Hook run by the context.
DefaultPolicyService	PolicyService which is configured with all Policy instances which are discovered in the Spring context and only focuses on a small subset of IObject types as specified by DefaultPolicyService.filterObject(IObject).
Definitions	container for QueryParameterDef instances.
DelegatingStats	Delegates to a SessionStats which is acquired from DelegatingStats.stats().
DeleteBean	Strict implementation of the IDelete service interface which will use the SecuritySystem via SecuritySystem.runAsAdmin(AdminAction) to forcibly delete instances.
DeleteLogMessage
DeleteLogsMessage
Deletion	Maintain state about a delete itself.
Deletion.Builder	Inner class which can be used to generate a Deletion.
DestroySessionMessage	Published before a session destruction.
EnsureEnum	Utility bean for ensuring that enumeration values do exist in the database.
EventBacklog	Thread-safe java.util-like Container for storing EventLog instances for later parsing.
EventHandler	method interceptor responsible for login and creation of Events.
EventListenersFactoryBean	configuring all the possible event listeners within XML can be cumbersome.
EventLogFailure	Signifies that the processing of a EventLog has failed.
EventLogListener	responsible for responding to all Hibernate Events.
EventLogLoader	Data access object for the FullTextIndexer which provides an Iterator interface for EventLog instances to be properly indexed.
EventLogMessage	Published only when an event log should be saved at the end of a transaction.
EventLogQueue	PersistentEventLogLoader implementation which loads many rows at the same time, culling out duplicates in order to speed up indexing.
EventLogsMessage	Published with the final collection of EventLog instances which will be saved.
EventMethodInterceptor	filter which can be added to any event type in order to catch execution.
EventMethodInterceptor.Action
EventMethodInterceptor.DisableAction
EventProvider	Provider for Event objects which is responsible for persisting and populating such entities.
EventProviderInDb	Provider for Event objects which is responsible for persisting and populating such entities using Hibernate in accordance with the currently available IUpdate implementation.
EventProviderInMemory	Provider for Event objects which is responsible for persisting and populating such entities in-memory.
EventProviderWrapper<P extends EventProvider & ReadOnlyStatus.IsAware>	An event provider that offers a unified view of multiple underlying event providers.
ExecutionThread	Thread which can be started and will appropriately acquire a session, then use the Executor to complete its work.
Executor	Simple execution/work interface which can be used for internal tasks which need to have a full working implementation.
Executor.Descriptive
Executor.Impl
Executor.LoggedWork<X>
Executor.Priority
Executor.SimpleSqlWork	Simple adapter which takes a String for Executor.Descriptive.description
Executor.SimpleWork<T>	Simple adapter which takes a String for Executor.Descriptive.description
Executor.SqlWork	Work SPI to perform actions related to stateless sessions.
Executor.StatefulWork	In the case of a stateful work order, the bean itself needs to be associated with the sessionHandler and thread rather than the word instance itself.
Executor.Work<X>	Work SPI to perform actions within the server as if they were fully wrapped in our service logic.
ExtendedMetadata	extension of the model metadata provided by SessionFactory.
ExtendedMetadata.Immutables
ExtendedMetadata.Impl	Sole implementation of ExtendedMetadata.
ExtendedMetadata.Locks	inner class which wraps the information (index number, path, etc) related to what fields a particular object can lock.
ExtendedMetadata.Relationship	Simple value class to maintain all of the state for use by ExtendedMetadata.getRelationship(String, String) and ExtendedMetadata.getSQLJoin(String, String, String, String).
FailedLoginMailSender	On an LoginAttemptMessage potentially send an email to administrators or the user herself to alert of possible security issues.
FileDeleter	Helper class which sorts through a number of file-based deletions before processing them.
FileParser	Object which attempts to parse any file given to it.
FilePasswordProvider	Example password provider which uses the given file as password lookup.
ForceTransactionAttributeSource	Requires that all method calls have some other form of attribute source by throwing an exception if accessed;
FullText	Search based on Lucene's Query class.
FullTextAnalyzer	Deprecated.
FullTextBridge	Deprecated.
FullTextIndexer	Deprecated.
FullTextIndexer2	An indexer bean replacing the 5.4 full-text thread FullTextIndexer with adequate functionality.
FullTextThread	Deprecated.
GlobalMulticaster	Global ApplicationEventMulticaster which can be used to integrate parent and child OmeroContext instances.
GraphException	Exception which will be thrown by traversing the graph if an error occurred.
GraphPathBean	The graph path bean holds the Hibernate object mapping and assists navigation thereof.
GraphPathReport	A standalone tool for producing a summary of the Hibernate object mapping for our Sphinx documentation.
GraphPolicy	A policy guides how to traverse the graph.
GraphPolicy.Ability	Abilities that the user may have to operate upon model objects.
GraphPolicy.Action	The action to take on an object instance.
GraphPolicy.Details	A tuple noting the state of a mapped object instance in the current graph traversal.
GraphPolicy.Orphan	If an object instance has any GraphPolicy.Action.EXCLUDEd parents that would prevent it from being orphaned.
GraphPolicyRule	A graph policy rule specifies a component of a GraphPolicy.
GraphPolicyRulePredicate	A plug-in for graph policy rule matches whereby an object may be matched against named values.
GraphTraversal	An alternative implementation of model object graph traversal, relying on SELECTing in advance for making decisions, instead of rolling back to savepoints to recover from failed attempts to act.
GraphTraversal.PlanExecutor	Executor that allows callers to actually perform the planned action.
GraphTraversal.Processor	Executes the planned operation.
GroupAttributeMapper
GroupChmodStrategy	ChmodStrategy which only permits modifying the permissions on groups.
GroupContextMapper	Specialized OME ExperimenterGroup context mapper.
GroupPredicate	A predicate that allows group=system and similar to be used in graph policy rule matches.
HardWiredInterceptor	Extension point for interceptors which should be compiled in from third-party code.
HibernateUtils	contains methods for reloading unloaded entities and nulled collections as well as determining the index of certain properties in a dehydrated Hibernate array.
Hierarchy	single-point of entry for walking of OME container hierarchies.
HierarchyNavigator	Query the database for relationships between model objects.
HierarchyNavigatorWrap<T,E>	Convenience class for creating versions of HierarchyNavigator with different model object representations.
HierarchyTransformations
HqlQuery	Delegate to IQuery.findAllByQuery(String, Parameters).
IceUtil	Methods for working with Ice.
IdMapHelper
IdMapHolder
IndexWatcher	The index watcher writes REINDEX entries to the event log and waits for the indexing thread to process them.
InternalServiceFactory	subclass of ome.system.ServiceFactory which retrieves unmanaged ("internal") service-instances.
Intersection	Intersection SearchAction which combines two other search actions into one logical unit, e.g.
IObjectClassQuery	simple query subclass which uses the Parameters.CLASS parameter value to create a Criteria and then adds Expression instances based on all other parameter names.
IProcessManager	Manages asynchronous processing logic for all Job instances created.
JavaImageScalingService	Provides methods for scaling buffered images using Java Image Scaling.
JdbcHashedPasswordProvider	Central PasswordProvider which uses the "password" table in the central OMERO database.
JdbcPasswordProvider	Central PasswordProvider which uses the "password" table in the central OMERO database.
JobBean	Provides methods for submitting asynchronous tasks.
JvmSettingsCheck	Hook run by the context which prints out JVM-related information, primarily Java version, max heap size and available processors.
KeyAndTrustStoreConfiguration	Calls System.setProperty(String, String) for the "javax.net.ssl" properties needed to configure a trust store and a keystore for the Java process.
LdapConfig	Static methods for dealing with LDAP (DN) and the "password" table.
LdapImpl	Provides methods for administering user accounts, passwords, as well as methods which require special privileges.
LdapPasswordProvider	LDAP PasswordProvider which can create users on request to synchronize with an LDAP directory.
LdapPasswordProvider431	LDAP PasswordProvider which can create users on request to synchronize with an LDAP directory.
LightAdminPrivileges	Report the light administrator privileges associated with a given session.
LightAdminPrivilegesCleanup	Periodically clean up old entries from the _current_admin_privileges database table.
LightAdminPrivilegesSecurityFilter	Deprecated. because the 2019-SV5 fix addresses Session privacy no less than this, see PrivilegedStringType
ListAsSQLArrayUserType<T>	Hibernate type to store Lists of primitives using SQL ARRAY.
ListAsSQLArrayUserType.ArrayFactory
ListAsSQLArrayUserType.BOOLEAN	To use, define : hibernate.property type="ome.tools.hibernate.ListAsSQLArrayUserType$BOOLEAN" hibernate.column name="fieldName" sql-type="bool[]"
ListAsSQLArrayUserType.DATE	To use, define : hibernate.property type="ome.tools.hibernate.ListAsSQLArrayUserType$DATE" hibernate.column name="fieldName" sql-type="timestamp[]"
ListAsSQLArrayUserType.DOUBLE	To use, define : hibernate.property type="ome.tools.hibernate.ListAsSQLArrayUserType$DOUBLE" hibernate.column name="fieldName" sql-type="float8[]"
ListAsSQLArrayUserType.ENUM<E extends java.lang.Enum<E>>	Warning, this one is special.
ListAsSQLArrayUserType.FLOAT	To use, define : hibernate.property type="ome.tools.hibernate.ListAsSQLArrayUserType$FLOAT" hibernate.column name="fieldName" sql-type="real[]"
ListAsSQLArrayUserType.INTEGER	To use, define : hibernate.property type="ome.tools.hibernate.ListAsSQLArrayUserType$INTEGER" hibernate.column name="fieldName" sql-type="int[]"
ListAsSQLArrayUserType.STRING	To use, define : hibernate.property type="ome.tools.hibernate.ListAsSQLArrayUserType$STRING" hibernate.column name="fieldName" sql-type="text[]"
ListAsSQLArrayUserType.STRING2	To use, define : hibernate.property type="ome.tools.hibernate.ListAsSQLArrayUserType$STRING2" hibernate.column name="fieldName" sql-type="text[]" Added by Josh
LocalAdmin	Provides local (internal) extensions for administration
LocalCompress	Provides methods for performing scaling (change of the image size through interpolation or other means) on BufferedImages.
LocalConfig	Provides local (internal) extensions for configuration.
LocalQuery	Provides local (internal) extensions for querying
LocalSession	Provides local (internal) extensions for session management
LocalShare	Provides local (internal) extensions for shares
LocalUpdate	Provides local (internal) extensions for updating
LoginAttemptListener	Listens for any LoginAttemptMessage.
LoginAttemptMessage	Published when any check is performed against a password.
LongCounter	Counter object which increments an internal long by some integer value, and according to some strategy publishes an InternalMessage subclass.
LongSeqHelper
LongSeqHolder
LsidUtils
LutProviderImpl	Lookup table provider implementation.
MailSender	Basic bean with setter injection that can be used as a base class for other senders.
MailUtil	Methods for dealing with the preparation of JavaMail MIME messages.
Main	Commandline entry-point for various full text actions.
ManagedServiceFactory	subclass of ome.system.ServiceFactory which retrieves managed service-instances.
ManualFlushHibernateTemplate
MapAnnotationSubethaListener	Basic SimpleMessageListener which stores all received emails as MapAnnotation instances belong to root with the namespace MapAnnotationSubethaListener.NAMESPACE.
MergeEventListener	responsible for responding to merge events.
MetadataImpl	Implement the IMetadata I/F.
MethodCounter	Counter for active methods for a given session.
MethodSecurity	Interface which allows security interceptors to check if a method should be executable for a given user.
MethodStatsMessage	Published when more than the specified number of active method calls is reached.
ModelObjectSequencer	Deprecated. no longer used internally, replaced by GraphTraversal.orderFileDeletion()
MySeqGenerator	http://www.hibernate.org/296.html
NewUserGroupBean	Strategy for finding the appropriate groups for a given user in LDAP.
NewUserGroupOwnerBean	Strategy for finding the appropriate group owners for a given user in LDAP.
NodeProvider	Provider for Node objects which is responsible for persisting and populating such entities.
NodeProviderInDb	Provider for Node objects which is responsible for persisting and populating such entities.
NodeProviderInMemory	Provider for Node objects which is responsible for persisting and populating such entities.
NodeProviderWrapper<P extends NodeProvider & ReadOnlyStatus.IsAware>	A node provider that offers a unified view of multiple underlying node providers.
NullEventHandler	Provides only the bare minimum of functionality to allow methods to succeed.
NullQuerySource	always returns null for any id.
NullSessionStats	Implementation of SessionStats which does nothing.
Obj
ObjectMailSender	When an EventLogMessage of the specified type and kind is received, an email is sent to all users which are returned by a given query.
ObjectsReadCounter	Counter for all the objects read in a session.
ObjectsReadStatsMessage	Published when some limit in user/group/session activity has been reached.
ObjectsWrittenCounter	Counter for all the objects read in a session.
ObjectsWrittenStatsMessage
ObjHolder
ObjPrx
ObjPrxHelper	Provides type-specific helper functions.
ObjPrxHolder
ObjSeqHelper
ObjSeqHolder
OmeroFilePathResolver	OMERO server based resolver for file paths.
OmeroInterceptor	implements Interceptor for controlling various aspects of the Hibernate runtime.
OMEROMetadataStore	An OMERO metadata store.
OmeroModelContextMapper	Parent class for any OMERO model-to-LDAP mappers.
OnContextRefreshedEventListener	ApplicationListener which only listens for ContextRefreshedEvent and only responds to the first one.
OneGroupSecurityFilter	overrides FilterDefinitionFactoryBean in order to construct our security filter in code and not in XML.
OrgUnitNewUserGroupBean	Handles the ":ou:" specifier from omero-server.properties by adding the user to a group named by the final organizational unit.
OriginalFileDeletions	Deletes all repository files immediately.
ParserOpenFileMessage	A trivial copy of RegisterServiceCleanupMessage with a different name so that we can catch files opened during search indexing and close them at the end of parsing.
ParserSession	Deprecated.
PasswordChangeException	Caught exception thrown from PasswordProvider.changePassword(String, String) to allow read-only implementations to refuse an action.
PasswordProvider	Authentication interface responsible for checking and changing passwords.
PasswordProviders	Composite class which delegates to each of the configured providers in turn.
PasswordUtil	Static methods for dealing with password hashes and the "password" table.
PasswordUtil.METHOD
PasswordUtility	Extension interface to PasswordProvider for methods which may or may not be available from a provider implementation.
PdfParser	FileParser for "application/pdf" files using PDFBox.
PermissionsPredicate	A predicate that allows perms=rwr--- and similar to be used in graph policy rule matches.
PerSessionStats	Delegates to a SessionStats which is acquired on every method invocation.
PersistentEventLogLoader	EventLogLoader implementation which keeps tracks of the last EventLog instance, and always provides the next unindexed instance.
PersistentEventLogLoader	Deprecated.
PersistentEventLogLoader	EventLogLoader implementation which keeps tracks of the last EventLog instance, and always provides the next unindexed instance.
PersonContextMapper	Specialized OME Experimenter context mapper.
PerThreadStats	Delegates to a SessionStats which is acquired on every method invocation.
PixelDataHandler	Simple action which can be done in an asynchronous thread in order to process PIXELDATA event logs.
PixelDataThread
PixelsFileDeletions	Registers the given file paths as well as other Pixel-related files like Pyramids for later deletion via AbstractFileDeletions.deleteLocal().
PixelsImpl	implementation of the Pixels service interface.
PojosFindAnnotationsQueryDefinition
PojosFindHierarchiesQueryDefinition	walks up the hierarchy tree starting at Image nodes while fetching various information.
PojosGetImagesByOptionsQueryDefinition
PojosGetImagesQueryDefinition
PojosGetUserImagesQueryDefinition
PojosImpl	implementation of the Pojos service interface.
PojosLoadHierarchyQueryDefinition
Policy	Strategy to permit the flexible restriction of certain actions throughout OMERO.
PolicyService	Internal service containing a number of configured Policy instances.
PrincipalHolder	Stack of active Principal instances.
Process
ProcessCallback
ProcessManager
ProcessManager.Work	Task performed by the ProcessManager on each invocation of ExecutionThread.run().
Processor
ProcessorSkeleton
ProcessSkeleton
ProjectionBean	Implements projection functionality for Pixels sets as declared in IProjection.
ProjectWithImageNameBridge	Deprecated.
PropertyFilterInitializer	Initialize the filters for the subclasses of PrivilegedStringType.
ProxyCleanupFilter	removes all proxies from a return graph to prevent ClassCastExceptions and Session Closed exceptions.
ProxyCleanupFilter.Interceptor	wraps a filter for each invocation
ProxySafeFilter	extension to ContextFilter to check for uninitialized Hibernate proxies before stepping into an entity or collection.
Query<T>	base Query type to facilitate the creation of ORM queries.
QueryBuilder	Very thin wrapper around a StringBuilder to generate HQL queries.
QueryConstraints	AdminAction which queries all datasets and retrieve images linked to the datasets.
QueryException	something failed in looking up a query
QueryFactory	query locator which is configured by Spring.
QueryImpl	Provides methods for directly querying object graphs.
QueryNewUserGroupBean	Handles the ":query:" specifier from omero-server.properties.
QueryParameterDef	definition of a slot into which a QueryParameter must fit.
QuerySource	contract for any source of queries.
RawFileBean	Raw file gateway which provides access to the OMERO file repository.
RawFileBeanReadOnly	Raw file gateway which provides access to the OMERO file repository.
RawPixelsBean	Implementation of the RawPixelsStore stateful service.
RawPixelsBeanReadOnly	Implementation of the RawPixelsStore stateful service.
ReadOnlyConfigInit	Propagate the server's read-only status into corresponding keys in the configuration service.
ReadOnlyStatus	Hook run by the context as early as possible to detect if the DB connection is read-only.
ReadOnlyStatus.IsAware	Implemented by classes that can report if a given read-only status would cause them to be in read-only mode.
RegisterServiceCleanupMessage	Published when some resource must be cleaned up after method execution.
ReindexMessage<T extends ome.model.IObject>	Published when one or more IObject instances must be re-indexed.
ReloadFilter	UpdateFilter subclass specialized for use with the Session.save(Object) (as opposed to Session.merge(Object)) method.
ReloadingRefreshEventListener	responsible for responding to RefreshEvent.
RenderingBean	Provides the RenderingEngine service.
RenderingSettingsImpl	Implementation of the IRenderingSettings I/F.
RepoFile	File type wrapper for paths which are intended for being stored in the database as a part of this repository.
RepoFile.FsFile	File type wrapper for actual OS files.
RepositoryInfoImpl	Class implementation of the IRepositoryInfo service interface.
RepositoryTask	Class implementation of various mechanized tasks, database queries, file I/O, etc.
RoleProvider	Provides user and group creation, deletion, and modification for use by services.
SaveEventListener	event listener which will only handle newly created (transient) objects in a given graph.
SchedulerFactoryBean	Produces a Scheduler which automatically loads all the triggers it can find.
ScriptFileType	Definition of the script types that will be accepted by the server.
ScriptProcess
ScriptProcessor
ScriptRepoHelper	Strategy used by the ScriptRepository for registering, loading, and saving files.
SearchAction	Serializable action used by SearchBean to generate results lazily.
SearchBean	Implements the Search interface.
SearchValues	Values used by SearchBean to store user requests.
SecureAction	Action for passing to SecuritySystem.doAction(SecureAction, IObject...).
SecureMerge	Helper originally from SimpleRoleProvider for merging admin objects.
SecurityFilter	Base filter interface ...
SecurityFilterHolder	Security dispatcher holding each currently active SecurityFilter instance and allowing dispatching between them.
SecuritySystem	central security interface.
SecuritySystemHolder	Security dispatcher holding each currently active SecuritySystem instance and allowing dispatching between them.
SelfCorrectingDataSource	DataSource delegate which wraps the
ServerDirectoryCheck	Hook run by the context at startup to create needed directories for the server.
ServerDownMailSender	Send an email to all members of the system group when the server is shutting down.
ServerUpMailSender	Announces to all members of the system group that the server has come up.
ServerVersionCheck	Hook run by the context.
ServiceHandler
SessionBean	Implementation of ISession.
SessionCache	Synchronized and lockable state for the SessionManager.
SessionCache.StaleCacheListener	Observer pattern used to refresh sessions in doUpdate.
SessionCallback
SessionCallback.SimpleCloseCallback	Assumes that only close() will be called.
SessionContext	Extends EventContext to hold a Session.
SessionContext.Count	Synchronized counter which can be passed between SessionContext instances as they are recreated.
SessionContextImpl
SessionFactory	Simple source of Thread-aware Session instances.
SessionHandler	interceptor which delegates to HibernateInterceptor for stateless services but which keeps a WeakHashMap of sessions keyed by the stateful service reference.
SessionManager	Responsible for holding onto Session instances for optimized login.
SessionManager.CreationRequest	Extensible data object which can be passed to create* methods to stop the explosion of different methods.
SessionManagerImpl	Is for ISession a cache and will be kept there in sync? OR Factors out the logic from ISession and SessionManagerI Therefore either called directly, or via synchronous messages.
SessionProvider	Provides SessionManagerImpl with wrapper around session storage backends.
SessionProviderInDb	Is for ISession a cache and will be kept there in sync? OR Factors out the logic from ISession and SessionManagerI Therefore either called directly, or via synchronous messages.
SessionProviderInMemory	In-memory implementation of SessionProviderInDb.
SessionProviderWrapper<P extends SessionProvider & ReadOnlyStatus.IsAware>	A session provider that offers a unified view of multiple underlying session providers.
SessionsCreatedCounter	Counter for all the objects read in a session.
SessionsCreatedStatsMessage	Published when some limit in user/group/session activity has been reached.
SessionStats	Thread-safe counter for all
ShareBean	Note: SessionManager should not be used to obtain the Share data since it may not be completely in sync.
ShareData
ShareDataHolder
ShareDataPrx
ShareDataPrxHelper	Provides type-specific helper functions.
ShareDataPrxHolder
ShareItem
ShareItemHolder
ShareItemPrx
ShareItemPrxHelper	Provides type-specific helper functions.
ShareItemPrxHolder
ShareRestrictionTransactionAttributeSource	Prevents methods from setting the transaction to readOnly = false when a share is activated.
ShareStore	Entry to the Ice code generated data/ directory.
SharingACLVoter
SharingSecurityFilter	The sharing security filter provides database-level access protection for share contexts.
SharingSecuritySystem	central security interface.
ShutdownSafeEhcacheManagerFactoryBean	Workaround for the Spring/EHCache shutdown sequence.
SimilarTerms	Search to find similar terms to some given terms.
SimpleLuceneOptions	Deprecated.
SimpleRoleProvider	Implements RoleProvider.
SimpleSessionStats
SleepTimer	Provides a timer for having a thread sleep that prematurely awakens when the server is to shut down, so the sleeping does not keep the server running.
SmtpAuthenticator
SomeMustNone	FullText subclass which parses 3 arrays of strings into into a single Lucene query.
SqlArray<T>	Hibernate type to store a java array using SQL ARRAY.
SqlArray.BOOLEAN
SqlArray.DATE
SqlArray.DOUBLE
SqlArray.FLOAT
SqlArray.INTEGER
SqlArray.STRING
SqlArray.STRING2
SqlQueryInterceptor	Pulls SQL query rewriting into a simple superclass of OmeroInterceptor for use outside Blitz by other server threads.
SqlQueryTransformer	Rewrite SQL queries to reverse the effects of @ColumnTransformer annotations in WHERE clauses.
StringQuery	simple HQL query.
StringQuerySource	interprets the query id as an HQL query.
StringSeqHelper
StringSeqHolder
SubethaSMTP	Simple server bean which can be started on Spring context creation and shutdown when the application is editing.
SVGRasterizer	This class provides a simple and method based API for converting a SVG document fragment to a BufferedImage.
SystemTypes	Defines what IObject classes are considered "system" types.
TablesBridge	Deprecated.
TagsAndGroups	Query template used by SearchBean to store user requests.
ThreadPool	An internal implementation of ThreadPoolExecutor that additionally handles the submission of ThreadPool.background(Callable) tasks at a lower priority and with more limited slots.
ThumbnailBean	Provides methods for directly querying object graphs.
ThumbnailBeanReadOnly	Provides methods for directly querying object graphs.
ThumbnailCtx
ThumbnailCtx.NoThumbnail	Marker exception which is thrown by all methods which wish to tell their callers that for whatever reason the desired Thumbnail is not available, in which case the caller can use a *Direct method instead.
ThumbnailFileDeletions	Helper class which sorts through a number of file-based deletions before processing them.
TimeoutSetter	Sets timeouts for queries according to event context.
TinyImportFixture	Deprecated.
TokenHolder	Manages a special token (a unique object) which can be inserted into IObject instances for special almost-administrative handling.
TypesImpl	implementation of the ITypes service interface.
Union	Union SearchAction which combines two other search actions into one logical unit, e.g.
UpdateEventListener	responsible for setting the updat event on all events shortly before being saved.
UpdateFilter	responsible for correlating entity identities during multiple calls to merge.
UpdateImpl	implementation of the IUpdate service interface
UserGroupUpdateEvent	InternalMessage published by the SecuritySystem when an Experimenter, ExperimenterGroup, or GroupExperimenterMap is inserted or updated.
WriteStrategy	Responsible for determining which users can modify which objects in which contexts.