Package ome.services

Class RawPixelsBean

java.lang.Object

ome.services.AbstractStatefulBean

ome.services.RawPixelsBean

All Implemented Interfaces:

java.io.Serializable, ome.api.RawPixelsStore, ome.api.ServiceInterface, ome.api.StatefulServiceInterface, ome.system.SelfConfigurableService

Direct Known Subclasses:

RawPixelsBeanReadOnly

@Transactional(readOnly=true)
public class RawPixelsBean
extends AbstractStatefulBean
implements ome.api.RawPixelsStore

Implementation of the RawPixelsStore stateful service.

Since:

OMERO3

See Also:

Serialized Form

Field Summary

Fields inherited from class ome.services.AbstractStatefulBean

iQuery, iUpdate, modified, sec

Constructor Summary

Constructors

Constructor	Description
RawPixelsBean()	default constructor
RawPixelsBean(boolean checking, java.lang.String omeroDataDir)	overridden to allow Spring to set boolean

Method Summary

Modifier and Type	Method	Description
void	activate()
byte[]	calculateMessageDigest()
void	clean()
void	close()
java.util.Map<java.lang.Integer,double[]>	findMinMax(int[] channels)
int	getByteWidth()
byte[]	getCol(int arg0, int arg1, int arg2, int arg3)
java.util.Map<java.lang.Integer,int[]>	getHistogram(int[] channels, int binCount, boolean globalRange, omeis.providers.re.data.PlaneDef plane)
byte[]	getHypercube(java.util.List<java.lang.Integer> offset, java.util.List<java.lang.Integer> size, java.util.List<java.lang.Integer> step)
long	getPixelsId()
java.lang.String	getPixelsPath()
byte[]	getPlane(int arg0, int arg1, int arg2)
long	getPlaneOffset(int arg0, int arg1, int arg2)
byte[]	getPlaneRegion(int z, int c, int t, int count, int offset)
long	getPlaneSize()
byte[]	getRegion(int arg0, long arg1)
java.util.List<java.util.List<java.lang.Integer>>	getResolutionDescriptions()
int	getResolutionLevel()
int	getResolutionLevels()
byte[]	getRow(int arg0, int arg1, int arg2, int arg3)
long	getRowOffset(int arg0, int arg1, int arg2, int arg3)
int	getRowSize()
java.lang.Class<? extends ome.api.ServiceInterface>	getServiceInterface()
byte[]	getStack(int arg0, int arg1)
long	getStackOffset(int arg0, int arg1)
long	getStackSize()
byte[]	getTile(int z, int c, int t, int x, int y, int w, int h)
int[]	getTileSize()
byte[]	getTimepoint(int arg0)
long	getTimepointOffset(int arg0)
long	getTimepointSize()
long	getTotalSize()
boolean	isDiskSpaceChecking()
boolean	isFloat()
boolean	isSigned()
void	passivate()
void	prepare(java.util.Set<java.lang.Long> pixelsIds)
boolean	requiresPixelsPyramid()
ome.model.core.Pixels	save()
void	setDiskSpaceChecking(boolean diskSpaceChecking)
void	setIRepositoryInfo(ome.api.IRepositoryInfo iRepositoryInfo)	Disk Space Usage service Bean injector
void	setPixelsData(ome.io.nio.PixelsService dataService)
void	setPixelsId(long pixelsId, boolean bypassOriginalFile)
void	setPixelsMetadata(ome.api.IPixels metaService)
void	setPlane(byte[] arg0, int arg1, int arg2, int arg3)
void	setRegion(int arg0, long arg1, byte[] arg2)
void	setResolutionLevel(int resolutionLevel)
void	setRow(byte[] arg0, int arg1, int arg2, int arg3, int arg4)
void	setSqlAction(ome.util.SqlAction sql)	SQL action Bean injector
void	setStack(byte[] arg0, int arg1, int arg2, int arg3)
void	setTile(byte[] data, int z, int c, int t, int x, int y, int w, int h)
void	setTileSizes(ome.io.nio.TileSizes tileSizes)
void	setTimepoint(byte[] arg0, int arg1)

Methods inherited from class ome.services.AbstractStatefulBean

getBeanHelper, getCurrentEventContext, isModified, modified, selfConfigure, setQueryService, setSecuritySystem, setUpdateService

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ome.api.StatefulServiceInterface

getCurrentEventContext

Constructor Detail

RawPixelsBean

public RawPixelsBean()

default constructor

RawPixelsBean

public RawPixelsBean(boolean checking,
                     java.lang.String omeroDataDir)

overridden to allow Spring to set boolean

Parameters:

checking -

Method Detail

setTileSizes

public void setTileSizes(ome.io.nio.TileSizes tileSizes)

getServiceInterface

public java.lang.Class<? extends ome.api.ServiceInterface> getServiceInterface()

Specified by:

getServiceInterface in interface ome.system.SelfConfigurableService

setPixelsMetadata

public final void setPixelsMetadata(ome.api.IPixels metaService)

setPixelsData

public final void setPixelsData(ome.io.nio.PixelsService dataService)

setIRepositoryInfo

public final void setIRepositoryInfo(ome.api.IRepositoryInfo iRepositoryInfo)

Disk Space Usage service Bean injector

Parameters:

iRepositoryInfo - an IRepositoryInfo

setSqlAction

public final void setSqlAction(ome.util.SqlAction sql)

SQL action Bean injector

Parameters:

sql - a SqlAction

passivate

@Transactional(readOnly=true)
public void passivate()

Specified by:

passivate in interface ome.api.StatefulServiceInterface

activate

@Transactional(readOnly=true)
public void activate()

Specified by:

activate in interface ome.api.StatefulServiceInterface

save

@Transactional(readOnly=false)
public ome.model.core.Pixels save()

Specified by:

save in interface ome.api.RawPixelsStore

close

@Transactional(readOnly=false)
public void close()

Specified by:

close in interface ome.api.StatefulServiceInterface

clean

public void clean()

setPixelsId

public void setPixelsId(long pixelsId,
                        boolean bypassOriginalFile)

Specified by:

setPixelsId in interface ome.api.RawPixelsStore

getPixelsId

public long getPixelsId()

Specified by:

getPixelsId in interface ome.api.RawPixelsStore

getPixelsPath

public java.lang.String getPixelsPath()

Specified by:

getPixelsPath in interface ome.api.RawPixelsStore

prepare

public void prepare(java.util.Set<java.lang.Long> pixelsIds)

Specified by:

prepare in interface ome.api.RawPixelsStore

calculateMessageDigest

public byte[] calculateMessageDigest()

Specified by:

calculateMessageDigest in interface ome.api.RawPixelsStore

getHypercube

public byte[] getHypercube(java.util.List<java.lang.Integer> offset,
                           java.util.List<java.lang.Integer> size,
                           java.util.List<java.lang.Integer> step)

Specified by:

getHypercube in interface ome.api.RawPixelsStore

getPlaneRegion

public byte[] getPlaneRegion(int z,
                             int c,
                             int t,
                             int count,
                             int offset)

Specified by:

getPlaneRegion in interface ome.api.RawPixelsStore

getPlane

public byte[] getPlane(int arg0,
                       int arg1,
                       int arg2)

Specified by:

getPlane in interface ome.api.RawPixelsStore

getPlaneOffset

public long getPlaneOffset(int arg0,
                           int arg1,
                           int arg2)

Specified by:

getPlaneOffset in interface ome.api.RawPixelsStore

getPlaneSize

public long getPlaneSize()

Specified by:

getPlaneSize in interface ome.api.RawPixelsStore

getRegion

public byte[] getRegion(int arg0,
                        long arg1)

Specified by:

getRegion in interface ome.api.RawPixelsStore

getRow

public byte[] getRow(int arg0,
                     int arg1,
                     int arg2,
                     int arg3)

Specified by:

getRow in interface ome.api.RawPixelsStore

getCol

public byte[] getCol(int arg0,
                     int arg1,
                     int arg2,
                     int arg3)

Specified by:

getCol in interface ome.api.RawPixelsStore

getRowOffset

public long getRowOffset(int arg0,
                         int arg1,
                         int arg2,
                         int arg3)

Specified by:

getRowOffset in interface ome.api.RawPixelsStore

getRowSize

public int getRowSize()

Specified by:

getRowSize in interface ome.api.RawPixelsStore

getStack

public byte[] getStack(int arg0,
                       int arg1)

Specified by:

getStack in interface ome.api.RawPixelsStore

getStackOffset

public long getStackOffset(int arg0,
                           int arg1)

Specified by:

getStackOffset in interface ome.api.RawPixelsStore

getStackSize

public long getStackSize()

Specified by:

getStackSize in interface ome.api.RawPixelsStore

getTimepoint

public byte[] getTimepoint(int arg0)

Specified by:

getTimepoint in interface ome.api.RawPixelsStore

getTimepointOffset

public long getTimepointOffset(int arg0)

Specified by:

getTimepointOffset in interface ome.api.RawPixelsStore

getTimepointSize

public long getTimepointSize()

Specified by:

getTimepointSize in interface ome.api.RawPixelsStore

getTotalSize

public long getTotalSize()

Specified by:

getTotalSize in interface ome.api.RawPixelsStore

getByteWidth

public int getByteWidth()

Specified by:

getByteWidth in interface ome.api.RawPixelsStore

isSigned

public boolean isSigned()

Specified by:

isSigned in interface ome.api.RawPixelsStore

isFloat

public boolean isFloat()

Specified by:

isFloat in interface ome.api.RawPixelsStore

setPlane

public void setPlane(byte[] arg0,
                     int arg1,
                     int arg2,
                     int arg3)

Specified by:

setPlane in interface ome.api.RawPixelsStore

setRegion

public void setRegion(int arg0,
                      long arg1,
                      byte[] arg2)

Specified by:

setRegion in interface ome.api.RawPixelsStore

setRow

public void setRow(byte[] arg0,
                   int arg1,
                   int arg2,
                   int arg3,
                   int arg4)

Specified by:

setRow in interface ome.api.RawPixelsStore

setStack

public void setStack(byte[] arg0,
                     int arg1,
                     int arg2,
                     int arg3)

Specified by:

setStack in interface ome.api.RawPixelsStore

setTimepoint

public void setTimepoint(byte[] arg0,
                         int arg1)

Specified by:

setTimepoint in interface ome.api.RawPixelsStore

getHistogram

public java.util.Map<java.lang.Integer,int[]> getHistogram(int[] channels,
                                                                 int binCount,
                                                                 boolean globalRange,
                                                                 omeis.providers.re.data.PlaneDef plane)

Specified by:

getHistogram in interface ome.api.RawPixelsStore

findMinMax

public java.util.Map<java.lang.Integer,double[]> findMinMax(int[] channels)

Specified by:

findMinMax in interface ome.api.RawPixelsStore

isDiskSpaceChecking

public boolean isDiskSpaceChecking()

setDiskSpaceChecking

public void setDiskSpaceChecking(boolean diskSpaceChecking)

getResolutionLevels

public int getResolutionLevels()

Specified by:

getResolutionLevels in interface ome.api.RawPixelsStore

getResolutionDescriptions

public java.util.List<java.util.List<java.lang.Integer>> getResolutionDescriptions()

Specified by:

getResolutionDescriptions in interface ome.api.RawPixelsStore

getTileSize

public int[] getTileSize()

Specified by:

getTileSize in interface ome.api.RawPixelsStore

requiresPixelsPyramid

public boolean requiresPixelsPyramid()

Specified by:

requiresPixelsPyramid in interface ome.api.RawPixelsStore

getResolutionLevel

public int getResolutionLevel()

Specified by:

getResolutionLevel in interface ome.api.RawPixelsStore

setResolutionLevel

public void setResolutionLevel(int resolutionLevel)

Specified by:

setResolutionLevel in interface ome.api.RawPixelsStore

getTile

public byte[] getTile(int z,
                      int c,
                      int t,
                      int x,
                      int y,
                      int w,
                      int h)

Specified by:

getTile in interface ome.api.RawPixelsStore

setTile

public void setTile(byte[] data,
                    int z,
                    int c,
                    int t,
                    int x,
                    int y,
                    int w,
                    int h)

Specified by:

setTile in interface ome.api.RawPixelsStore