Index (omero-model 5.7.0 API)

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All Classes All Packages

A

a00 - Variable in class ome.model.roi.AffineTransform
A00 - Static variable in class ome.model.roi.AffineTransform
a01 - Variable in class ome.model.roi.AffineTransform
A01 - Static variable in class ome.model.roi.AffineTransform
a02 - Variable in class ome.model.roi.AffineTransform
A02 - Static variable in class ome.model.roi.AffineTransform
a10 - Variable in class ome.model.roi.AffineTransform
A10 - Static variable in class ome.model.roi.AffineTransform
a11 - Variable in class ome.model.roi.AffineTransform
A11 - Static variable in class ome.model.roi.AffineTransform
a12 - Variable in class ome.model.roi.AffineTransform
A12 - Static variable in class ome.model.roi.AffineTransform
acceptFilter(Filter) - Method in class ome.model.acquisition.Arc
acceptFilter(Filter) - Method in class ome.model.acquisition.Detector
acceptFilter(Filter) - Method in class ome.model.acquisition.DetectorSettings
acceptFilter(Filter) - Method in class ome.model.acquisition.Dichroic
acceptFilter(Filter) - Method in class ome.model.acquisition.Filament
acceptFilter(Filter) - Method in class ome.model.acquisition.Filter
acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSet
acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
acceptFilter(Filter) - Method in class ome.model.acquisition.GenericExcitationSource
acceptFilter(Filter) - Method in class ome.model.acquisition.ImagingEnvironment
acceptFilter(Filter) - Method in class ome.model.acquisition.Instrument
acceptFilter(Filter) - Method in class ome.model.acquisition.Laser
acceptFilter(Filter) - Method in class ome.model.acquisition.LightEmittingDiode
acceptFilter(Filter) - Method in class ome.model.acquisition.LightPath
acceptFilter(Filter) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
acceptFilter(Filter) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
acceptFilter(Filter) - Method in class ome.model.acquisition.LightSettings
acceptFilter(Filter) - Method in class ome.model.acquisition.LightSource
acceptFilter(Filter) - Method in class ome.model.acquisition.Microscope
acceptFilter(Filter) - Method in class ome.model.acquisition.Objective
acceptFilter(Filter) - Method in class ome.model.acquisition.ObjectiveSettings
acceptFilter(Filter) - Method in class ome.model.acquisition.OTF
acceptFilter(Filter) - Method in class ome.model.acquisition.StageLabel
acceptFilter(Filter) - Method in class ome.model.acquisition.TransmittanceRange
acceptFilter(Filter) - Method in class ome.model.annotations.Annotation
acceptFilter(Filter) - Method in class ome.model.annotations.AnnotationAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.BasicAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.BooleanAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.ChannelAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.CommentAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.DatasetAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.DetectorAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.DichroicAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.DoubleAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.ExperimenterAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.FileAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.FilesetAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.FilterAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.FolderAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.ImageAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.InstrumentAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.LightPathAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.LightSourceAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.ListAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.LongAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.MapAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.NamespaceAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.NodeAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.NumericAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.ObjectiveAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.OriginalFileAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.PlateAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.ProjectAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.ReagentAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.RoiAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.ScreenAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.SessionAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.ShapeAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.TagAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.TermAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.TextAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.TimestampAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.TypeAnnotation
acceptFilter(Filter) - Method in class ome.model.annotations.WellAnnotationLink
acceptFilter(Filter) - Method in class ome.model.annotations.XmlAnnotation
acceptFilter(Filter) - Method in class ome.model.containers.Dataset
acceptFilter(Filter) - Method in class ome.model.containers.DatasetImageLink
acceptFilter(Filter) - Method in class ome.model.containers.Folder
acceptFilter(Filter) - Method in class ome.model.containers.FolderImageLink
acceptFilter(Filter) - Method in class ome.model.containers.FolderRoiLink
acceptFilter(Filter) - Method in class ome.model.containers.Project
acceptFilter(Filter) - Method in class ome.model.containers.ProjectDatasetLink
acceptFilter(Filter) - Method in class ome.model.core.Channel
acceptFilter(Filter) - Method in class ome.model.core.Image
acceptFilter(Filter) - Method in class ome.model.core.LogicalChannel
acceptFilter(Filter) - Method in class ome.model.core.OriginalFile
acceptFilter(Filter) - Method in class ome.model.core.Pixels
acceptFilter(Filter) - Method in class ome.model.core.PixelsOriginalFileMap
acceptFilter(Filter) - Method in class ome.model.core.PlaneInfo
acceptFilter(Filter) - Method in class ome.model.display.ChannelBinding
acceptFilter(Filter) - Method in class ome.model.display.CodomainMapContext
acceptFilter(Filter) - Method in class ome.model.display.ContrastStretchingContext
acceptFilter(Filter) - Method in class ome.model.display.PlaneSlicingContext
acceptFilter(Filter) - Method in class ome.model.display.ProjectionDef
acceptFilter(Filter) - Method in class ome.model.display.QuantumDef
acceptFilter(Filter) - Method in class ome.model.display.RenderingDef
acceptFilter(Filter) - Method in class ome.model.display.ReverseIntensityContext
acceptFilter(Filter) - Method in class ome.model.display.Thumbnail
acceptFilter(Filter) - Method in class ome.model.enums.AcquisitionMode
acceptFilter(Filter) - Method in class ome.model.enums.AdminPrivilege
acceptFilter(Filter) - Method in class ome.model.enums.ArcType
acceptFilter(Filter) - Method in class ome.model.enums.Binning
acceptFilter(Filter) - Method in class ome.model.enums.ChecksumAlgorithm
acceptFilter(Filter) - Method in class ome.model.enums.ContrastMethod
acceptFilter(Filter) - Method in class ome.model.enums.Correction
acceptFilter(Filter) - Method in class ome.model.enums.DetectorType
acceptFilter(Filter) - Method in class ome.model.enums.DimensionOrder
acceptFilter(Filter) - Method in class ome.model.enums.EventType
acceptFilter(Filter) - Method in class ome.model.enums.ExperimentType
acceptFilter(Filter) - Method in class ome.model.enums.Family
acceptFilter(Filter) - Method in class ome.model.enums.FilamentType
acceptFilter(Filter) - Method in class ome.model.enums.FilterType
acceptFilter(Filter) - Method in class ome.model.enums.Format
acceptFilter(Filter) - Method in class ome.model.enums.Illumination
acceptFilter(Filter) - Method in class ome.model.enums.Immersion
acceptFilter(Filter) - Method in class ome.model.enums.LaserMedium
acceptFilter(Filter) - Method in class ome.model.enums.LaserType
acceptFilter(Filter) - Method in class ome.model.enums.Medium
acceptFilter(Filter) - Method in class ome.model.enums.MicrobeamManipulationType
acceptFilter(Filter) - Method in class ome.model.enums.MicroscopeType
acceptFilter(Filter) - Method in class ome.model.enums.PhotometricInterpretation
acceptFilter(Filter) - Method in class ome.model.enums.PixelsType
acceptFilter(Filter) - Method in class ome.model.enums.ProjectionAxis
acceptFilter(Filter) - Method in class ome.model.enums.ProjectionType
acceptFilter(Filter) - Method in class ome.model.enums.Pulse
acceptFilter(Filter) - Method in class ome.model.enums.RenderingModel
acceptFilter(Filter) - Method in class ome.model.experiment.Experiment
acceptFilter(Filter) - Method in class ome.model.experiment.MicrobeamManipulation
acceptFilter(Filter) - Method in class ome.model.fs.Fileset
acceptFilter(Filter) - Method in class ome.model.fs.FilesetEntry
acceptFilter(Filter) - Method in class ome.model.fs.FilesetJobLink
acceptFilter(Filter) - Method in class ome.model.internal.Details
acceptFilter(Filter) - Method in class ome.model.internal.Link
acceptFilter(Filter) - Method in class ome.model.jobs.ImportJob: Deprecated.
acceptFilter(Filter) - Method in class ome.model.jobs.IndexingJob
acceptFilter(Filter) - Method in class ome.model.jobs.IntegrityCheckJob
acceptFilter(Filter) - Method in class ome.model.jobs.Job
acceptFilter(Filter) - Method in class ome.model.jobs.JobOriginalFileLink
acceptFilter(Filter) - Method in class ome.model.jobs.JobStatus
acceptFilter(Filter) - Method in class ome.model.jobs.MetadataImportJob
acceptFilter(Filter) - Method in class ome.model.jobs.ParseJob
acceptFilter(Filter) - Method in class ome.model.jobs.PixelDataJob
acceptFilter(Filter) - Method in class ome.model.jobs.ScriptJob
acceptFilter(Filter) - Method in class ome.model.jobs.ThumbnailGenerationJob
acceptFilter(Filter) - Method in class ome.model.jobs.UploadJob
acceptFilter(Filter) - Method in class ome.model.meta.DBPatch
acceptFilter(Filter) - Method in class ome.model.meta.Event
acceptFilter(Filter) - Method in class ome.model.meta.EventLog
acceptFilter(Filter) - Method in class ome.model.meta.Experimenter
acceptFilter(Filter) - Method in class ome.model.meta.ExperimenterGroup
acceptFilter(Filter) - Method in class ome.model.meta.ExternalInfo
acceptFilter(Filter) - Method in class ome.model.meta.GroupExperimenterMap
acceptFilter(Filter) - Method in class ome.model.meta.Namespace
acceptFilter(Filter) - Method in class ome.model.meta.Node
acceptFilter(Filter) - Method in class ome.model.meta.Session
acceptFilter(Filter) - Method in class ome.model.meta.Share
acceptFilter(Filter) - Method in class ome.model.meta.ShareMember
acceptFilter(Filter) - Method in class ome.model.roi.AffineTransform
acceptFilter(Filter) - Method in class ome.model.roi.Ellipse
acceptFilter(Filter) - Method in class ome.model.roi.Label
acceptFilter(Filter) - Method in class ome.model.roi.Line
acceptFilter(Filter) - Method in class ome.model.roi.Mask
acceptFilter(Filter) - Method in class ome.model.roi.Path: Deprecated.
acceptFilter(Filter) - Method in class ome.model.roi.Point
acceptFilter(Filter) - Method in class ome.model.roi.Polygon
acceptFilter(Filter) - Method in class ome.model.roi.Polyline
acceptFilter(Filter) - Method in class ome.model.roi.Rectangle
acceptFilter(Filter) - Method in class ome.model.roi.Roi
acceptFilter(Filter) - Method in class ome.model.roi.Shape
acceptFilter(Filter) - Method in class ome.model.screen.Plate
acceptFilter(Filter) - Method in class ome.model.screen.PlateAcquisition
acceptFilter(Filter) - Method in class ome.model.screen.Reagent
acceptFilter(Filter) - Method in class ome.model.screen.Screen
acceptFilter(Filter) - Method in class ome.model.screen.ScreenPlateLink
acceptFilter(Filter) - Method in class ome.model.screen.Well
acceptFilter(Filter) - Method in class ome.model.screen.WellReagentLink
acceptFilter(Filter) - Method in class ome.model.screen.WellSample
acceptFilter(Filter) - Method in class ome.model.stats.StatsInfo
acceptFilter(Filter) - Method in class ome.model.units.ElectricPotential
acceptFilter(Filter) - Method in class ome.model.units.Frequency
acceptFilter(Filter) - Method in class ome.model.units.Length
acceptFilter(Filter) - Method in class ome.model.units.Power
acceptFilter(Filter) - Method in class ome.model.units.Pressure
acceptFilter(Filter) - Method in class ome.model.units.Temperature
acceptFilter(Filter) - Method in class ome.model.units.Time
acceptFilter(Filter) - Method in interface ome.util.Filterable
acceptFilter(Filter) - Method in class ome.util.PermDetails
ACLCreateViolation - Exception in ome.conditions.acl: User does not have permissions to perform given action.
ACLCreateViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLCreateViolation
ACLDeleteViolation - Exception in ome.conditions.acl: User does not have permissions to perform given action.
ACLDeleteViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLDeleteViolation
ACLLoadViolation - Exception in ome.conditions.acl: User does not have permissions to perform given action.
ACLLoadViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLLoadViolation
ACLUpdateViolation - Exception in ome.conditions.acl: User does not have permissions to perform given action.
ACLUpdateViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLUpdateViolation
ACLViolation - Exception in ome.conditions.acl: User has attempted an action which is not permitted by the Permissions of a given instance.
ACLViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLViolation
acquisitionData - Variable in class ome.parameters.Options
acquisitionDate - Variable in class ome.model.core.Image
ACQUISITIONDATE - Static variable in class ome.model.core.Image
AcquisitionMode - Class in ome.model.enums
AcquisitionMode() - Constructor for class ome.model.enums.AcquisitionMode
AcquisitionMode(Long) - Constructor for class ome.model.enums.AcquisitionMode
AcquisitionMode(Long, boolean) - Constructor for class ome.model.enums.AcquisitionMode: Main constructor.
AcquisitionMode(String) - Constructor for class ome.model.enums.AcquisitionMode
AcquisitionMode.Details - Class in ome.model.enums
action - Variable in class ome.model.meta.EventLog
ACTION - Static variable in class ome.model.meta.EventLog
active - Variable in class ome.model.display.ChannelBinding
active - Variable in class ome.model.display.ProjectionDef
active - Variable in class ome.model.meta.Share
ACTIVE - Static variable in class ome.model.display.ChannelBinding
ACTIVE - Static variable in class ome.model.display.ProjectionDef
ACTIVE - Static variable in class ome.model.meta.Share
activeSession(String) - Method in class ome.util.actions.PostgresSqlAction
activeSession(String) - Method in interface ome.util.SqlAction: Returns whether the given string is the UUID of a session that is currently active.
add(String) - Method in class ome.parameters.Period
add(QueryParameter) - Method in class ome.parameters.Parameters
Add(Conversion[]) - Constructor for class ome.model.units.Conversion.Add
Add(Conversion...) - Static method in class ome.model.units.Conversion: Static helper for creating Conversion.Add instances.
addAlgorithm(String) - Method in class ome.parameters.Parameters
addAll(Parameters) - Method in class ome.parameters.Parameters: adds all the information from the passed in Parameters instance to this instance.
addAll(QueryParameter[]) - Method in class ome.parameters.Parameters: adds all the information from the passed in Parameters instance to this instance.
addAnnotationAnnotationLink(AnnotationAnnotationLink) - Method in class ome.model.annotations.Annotation: use instead of setAnnotationLinks .
addAnnotationAnnotationLink(AnnotationAnnotationLink, boolean) - Method in class ome.model.annotations.Annotation: Adds a ome.model.annotations.AnnotationAnnotationLink to annotationLinks, allowing for recursion -- whether or not addAnnotationAnnotationLink will be called on the addition if it is loaded
addAnnotationAnnotationLinkSet(Collection<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation: use like addAnnotationAnnotationLink.
addBoolean(String, Boolean) - Method in class ome.parameters.Parameters
addChannel(Channel) - Method in class ome.model.core.LogicalChannel: use instead of setChannels .
addChannel(Channel) - Method in class ome.model.core.Pixels: use instead of setChannels .
addChannelAnnotationLink(ChannelAnnotationLink) - Method in class ome.model.core.Channel: use instead of setAnnotationLinks .
addChannelAnnotationLink(ChannelAnnotationLink, boolean) - Method in class ome.model.core.Channel: Adds a ome.model.annotations.ChannelAnnotationLink to annotationLinks, allowing for recursion -- whether or not addChannelAnnotationLink will be called on the addition if it is loaded
addChannelAnnotationLinkSet(Collection<ChannelAnnotationLink>) - Method in class ome.model.core.Channel: use like addChannelAnnotationLink.
addChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef: use instead of setWaveRendering .
addChannelBindingSet(Collection<ChannelBinding>) - Method in class ome.model.display.RenderingDef: use like addChannelBinding.
addChannelSet(Collection<Channel>) - Method in class ome.model.core.LogicalChannel: use like addChannel.
addChannelSet(Collection<Channel>) - Method in class ome.model.core.Pixels: use like addChannel.
addChildFolders(Folder) - Method in class ome.model.containers.Folder: use instead of setChildFolders .
addChildFoldersSet(Collection<Folder>) - Method in class ome.model.containers.Folder: use like addFolder.
addClass(Class) - Method in class ome.parameters.Parameters
addClass(String, Class) - Method in class ome.parameters.Parameters
addCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding: use instead of setSpatialDomainEnhancement .
addCodomainMapContextSet(Collection<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding: use like addCodomainMapContext.
addDatasetAnnotationLink(DatasetAnnotationLink) - Method in class ome.model.containers.Dataset: use instead of setAnnotationLinks .
addDatasetAnnotationLink(DatasetAnnotationLink, boolean) - Method in class ome.model.containers.Dataset: Adds a ome.model.annotations.DatasetAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDatasetAnnotationLink will be called on the addition if it is loaded
addDatasetAnnotationLinkSet(Collection<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset: use like addDatasetAnnotationLink.
addDatasetImageLink(DatasetImageLink) - Method in class ome.model.containers.Dataset: use instead of setImageLinks .
addDatasetImageLink(DatasetImageLink) - Method in class ome.model.core.Image: use instead of setDatasetLinks .
addDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.containers.Dataset: Adds a ome.model.containers.DatasetImageLink to imageLinks, allowing for recursion -- whether or not addDatasetImageLink will be called on the addition if it is loaded
addDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.core.Image: Adds a ome.model.containers.DatasetImageLink to datasetLinks, allowing for recursion -- whether or not addDatasetImageLink will be called on the addition if it is loaded
addDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.containers.Dataset: use like addDatasetImageLink.
addDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.core.Image: use like addDatasetImageLink.
addDetector(Detector) - Method in class ome.model.acquisition.Instrument: use instead of setDetector .
addDetectorAnnotationLink(DetectorAnnotationLink) - Method in class ome.model.acquisition.Detector: use instead of setAnnotationLinks .
addDetectorAnnotationLink(DetectorAnnotationLink, boolean) - Method in class ome.model.acquisition.Detector: Adds a ome.model.annotations.DetectorAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDetectorAnnotationLink will be called on the addition if it is loaded
addDetectorAnnotationLinkSet(Collection<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector: use like addDetectorAnnotationLink.
addDetectorSet(Collection<Detector>) - Method in class ome.model.acquisition.Instrument: use like addDetector.
addDichroic(Dichroic) - Method in class ome.model.acquisition.Instrument: use instead of setDichroic .
addDichroicAnnotationLink(DichroicAnnotationLink) - Method in class ome.model.acquisition.Dichroic: use instead of setAnnotationLinks .
addDichroicAnnotationLink(DichroicAnnotationLink, boolean) - Method in class ome.model.acquisition.Dichroic: Adds a ome.model.annotations.DichroicAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDichroicAnnotationLink will be called on the addition if it is loaded
addDichroicAnnotationLinkSet(Collection<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic: use like addDichroicAnnotationLink.
addDichroicSet(Collection<Dichroic>) - Method in class ome.model.acquisition.Instrument: use like addDichroic.
addEvent(Event) - Method in class ome.model.meta.Session: use instead of setEvents .
addEventLog(EventLog) - Method in class ome.model.meta.Event: use instead of setLogs .
addEventLogSet(Collection<EventLog>) - Method in class ome.model.meta.Event: use like addEventLog.
addEventSet(Collection<Event>) - Method in class ome.model.meta.Session: use like addEvent.
addExperimenterAnnotationLink(ExperimenterAnnotationLink) - Method in class ome.model.meta.Experimenter: use instead of setAnnotationLinks .
addExperimenterAnnotationLink(ExperimenterAnnotationLink, boolean) - Method in class ome.model.meta.Experimenter: Adds a ome.model.annotations.ExperimenterAnnotationLink to annotationLinks, allowing for recursion -- whether or not addExperimenterAnnotationLink will be called on the addition if it is loaded
addExperimenterAnnotationLinkSet(Collection<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter: use like addExperimenterAnnotationLink.
addExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink) - Method in class ome.model.meta.ExperimenterGroup: use instead of setAnnotationLinks .
addExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink, boolean) - Method in class ome.model.meta.ExperimenterGroup: Adds a ome.model.annotations.ExperimenterGroupAnnotationLink to annotationLinks, allowing for recursion -- whether or not addExperimenterGroupAnnotationLink will be called on the addition if it is loaded
addExperimenterGroupAnnotationLinkSet(Collection<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup: use like addExperimenterGroupAnnotationLink.
addExtendedRestrictions(Set<String>) - Method in class ome.model.internal.Permissions
addFilesetAnnotationLink(FilesetAnnotationLink) - Method in class ome.model.fs.Fileset: use instead of setAnnotationLinks .
addFilesetAnnotationLink(FilesetAnnotationLink, boolean) - Method in class ome.model.fs.Fileset: Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFilesetAnnotationLink will be called on the addition if it is loaded
addFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset: use like addFilesetAnnotationLink.
addFilesetEntry(FilesetEntry) - Method in class ome.model.core.OriginalFile: use instead of setFilesetEntries .
addFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset: use instead of setUsedFiles .
addFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.core.OriginalFile: use like addFilesetEntry.
addFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.fs.Fileset: use like addFilesetEntry.
addFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset: use instead of setJobLinks .
addFilesetJobLink(FilesetJobLink, boolean) - Method in class ome.model.fs.Fileset: Adds a ome.model.fs.FilesetJobLink to jobLinks, allowing for recursion -- whether or not addFilesetJobLink will be called on the addition if it is loaded
addFilesetJobLinkSet(Collection<FilesetJobLink>) - Method in class ome.model.fs.Fileset: use like addFilesetJobLink.
addFilter(Filter) - Method in class ome.model.acquisition.Instrument: use instead of setFilter .
addFilterAnnotationLink(FilterAnnotationLink) - Method in class ome.model.acquisition.Filter: use instead of setAnnotationLinks .
addFilterAnnotationLink(FilterAnnotationLink, boolean) - Method in class ome.model.acquisition.Filter: Adds a ome.model.annotations.FilterAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFilterAnnotationLink will be called on the addition if it is loaded
addFilterAnnotationLinkSet(Collection<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter: use like addFilterAnnotationLink.
addFiltered(String) - Method in class ome.model.internal.Details: consider the collection named by collectionName to be a "filtered" representation of the DB.
addFiltered(Collection<String>) - Method in class ome.model.internal.Details: consider all the collections named by the elements of collection to be a "filtered" representation of the DB.
addFilterSet(Collection<Filter>) - Method in class ome.model.acquisition.Instrument: use like addFilter.
addFilterSet(FilterSet) - Method in class ome.model.acquisition.Instrument: use instead of setFilterSet .
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.Filter: use instead of setEmissionFilterLink .
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.FilterSet: use instead of setEmissionFilterLink .
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.Filter: Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addFilterSetEmissionFilterLink will be called on the addition if it is loaded
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet: Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addFilterSetEmissionFilterLink will be called on the addition if it is loaded
addFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter: use like addFilterSetEmissionFilterLink.
addFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet: use like addFilterSetEmissionFilterLink.
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.Filter: use instead of setExcitationFilterLink .
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.FilterSet: use instead of setExcitationFilterLink .
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.Filter: Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addFilterSetExcitationFilterLink will be called on the addition if it is loaded
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet: Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addFilterSetExcitationFilterLink will be called on the addition if it is loaded
addFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter: use like addFilterSetExcitationFilterLink.
addFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet: use like addFilterSetExcitationFilterLink.
addFilterSetSet(Collection<FilterSet>) - Method in class ome.model.acquisition.Instrument: use like addFilterSet.
addFolderAnnotationLink(FolderAnnotationLink) - Method in class ome.model.containers.Folder: use instead of setAnnotationLinks .
addFolderAnnotationLink(FolderAnnotationLink, boolean) - Method in class ome.model.containers.Folder: Adds a ome.model.annotations.FolderAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFolderAnnotationLink will be called on the addition if it is loaded
addFolderAnnotationLinkSet(Collection<FolderAnnotationLink>) - Method in class ome.model.containers.Folder: use like addFolderAnnotationLink.
addFolderImageLink(FolderImageLink) - Method in class ome.model.containers.Folder: use instead of setImageLinks .
addFolderImageLink(FolderImageLink) - Method in class ome.model.core.Image: use instead of setFolderLinks .
addFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.containers.Folder: Adds a ome.model.containers.FolderImageLink to imageLinks, allowing for recursion -- whether or not addFolderImageLink will be called on the addition if it is loaded
addFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.core.Image: Adds a ome.model.containers.FolderImageLink to folderLinks, allowing for recursion -- whether or not addFolderImageLink will be called on the addition if it is loaded
addFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.containers.Folder: use like addFolderImageLink.
addFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.core.Image: use like addFolderImageLink.
addFolderRoiLink(FolderRoiLink) - Method in class ome.model.containers.Folder: use instead of setRoiLinks .
addFolderRoiLink(FolderRoiLink) - Method in class ome.model.roi.Roi: use instead of setFolderLinks .
addFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.containers.Folder: Adds a ome.model.containers.FolderRoiLink to roiLinks, allowing for recursion -- whether or not addFolderRoiLink will be called on the addition if it is loaded
addFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.roi.Roi: Adds a ome.model.containers.FolderRoiLink to folderLinks, allowing for recursion -- whether or not addFolderRoiLink will be called on the addition if it is loaded
addFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.containers.Folder: use like addFolderRoiLink.
addFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.roi.Roi: use like addFolderRoiLink.
addGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter: use instead of setGroupExperimenterMap .
addGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.ExperimenterGroup: use instead of setGroupExperimenterMap .
addGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.Experimenter: Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap, allowing for recursion -- whether or not addGroupExperimenterMap will be called on the addition if it is loaded
addGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.ExperimenterGroup: Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap, allowing for recursion -- whether or not addGroupExperimenterMap will be called on the addition if it is loaded
addGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter: use like addGroupExperimenterMap.
addGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup: use like addGroupExperimenterMap.
addId(Long) - Method in class ome.parameters.Parameters
addIds(Collection) - Method in class ome.parameters.Parameters
addImage(Image) - Method in class ome.model.fs.Fileset: use instead of setImages .
addImageAnnotationLink(ImageAnnotationLink) - Method in class ome.model.core.Image: use instead of setAnnotationLinks .
addImageAnnotationLink(ImageAnnotationLink, boolean) - Method in class ome.model.core.Image: Adds a ome.model.annotations.ImageAnnotationLink to annotationLinks, allowing for recursion -- whether or not addImageAnnotationLink will be called on the addition if it is loaded
addImageAnnotationLinkSet(Collection<ImageAnnotationLink>) - Method in class ome.model.core.Image: use like addImageAnnotationLink.
addImageSet(Collection<Image>) - Method in class ome.model.fs.Fileset: use like addImage.
addInstrumentAnnotationLink(InstrumentAnnotationLink) - Method in class ome.model.acquisition.Instrument: use instead of setAnnotationLinks .
addInstrumentAnnotationLink(InstrumentAnnotationLink, boolean) - Method in class ome.model.acquisition.Instrument: Adds a ome.model.annotations.InstrumentAnnotationLink to annotationLinks, allowing for recursion -- whether or not addInstrumentAnnotationLink will be called on the addition if it is loaded
addInstrumentAnnotationLinkSet(Collection<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument: use like addInstrumentAnnotationLink.
addInteger(String, Integer) - Method in class ome.parameters.Parameters
addJobOriginalFileLink(JobOriginalFileLink) - Method in class ome.model.jobs.Job: use instead of setOriginalFileLinks .
addJobOriginalFileLink(JobOriginalFileLink, boolean) - Method in class ome.model.jobs.Job: Adds a ome.model.jobs.JobOriginalFileLink to originalFileLinks, allowing for recursion -- whether or not addJobOriginalFileLink will be called on the addition if it is loaded
addJobOriginalFileLinkSet(Collection<JobOriginalFileLink>) - Method in class ome.model.jobs.Job: use like addJobOriginalFileLink.
addLightPathAnnotationLink(LightPathAnnotationLink) - Method in class ome.model.acquisition.LightPath: use instead of setAnnotationLinks .
addLightPathAnnotationLink(LightPathAnnotationLink, boolean) - Method in class ome.model.acquisition.LightPath: Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks, allowing for recursion -- whether or not addLightPathAnnotationLink will be called on the addition if it is loaded
addLightPathAnnotationLinkSet(Collection<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath: use like addLightPathAnnotationLink.
addLightPathEmissionFilterLink(LightPathEmissionFilterLink) - Method in class ome.model.acquisition.LightPath: use instead of setEmissionFilterLink .
addLightPathEmissionFilterLink(LightPathEmissionFilterLink, boolean) - Method in class ome.model.acquisition.LightPath: Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addLightPathEmissionFilterLink will be called on the addition if it is loaded
addLightPathEmissionFilterLinkSet(Collection<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath: use like addLightPathEmissionFilterLink.
addLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath: use instead of setExcitationFilterLink .
addLightPathExcitationFilterLink(LightPathExcitationFilterLink, boolean) - Method in class ome.model.acquisition.LightPath: Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addLightPathExcitationFilterLink will be called on the addition if it is loaded
addLightPathExcitationFilterLinkSet(Collection<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath: use like addLightPathExcitationFilterLink.
addLightSettings(LightSettings) - Method in class ome.model.experiment.MicrobeamManipulation: use instead of setLightSourceSettings .
addLightSettingsSet(Collection<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation: use like addLightSettings.
addLightSource(LightSource) - Method in class ome.model.acquisition.Instrument: use instead of setLightSource .
addLightSourceAnnotationLink(LightSourceAnnotationLink) - Method in class ome.model.acquisition.LightSource: use instead of setAnnotationLinks .
addLightSourceAnnotationLink(LightSourceAnnotationLink, boolean) - Method in class ome.model.acquisition.LightSource: Adds a ome.model.annotations.LightSourceAnnotationLink to annotationLinks, allowing for recursion -- whether or not addLightSourceAnnotationLink will be called on the addition if it is loaded
addLightSourceAnnotationLinkSet(Collection<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource: use like addLightSourceAnnotationLink.
addLightSourceSet(Collection<LightSource>) - Method in class ome.model.acquisition.Instrument: use like addLightSource.
addList(String, List) - Method in class ome.parameters.Parameters
addLong(String, Long) - Method in class ome.parameters.Parameters
addMap(String, Map) - Method in class ome.parameters.Parameters
addMessageWithinDbPatchEnd(String, int, String) - Method in interface ome.util.SqlAction: Add a unique message to the DB patch table within the current patch.
addMessageWithinDbPatchEnd(String, int, String) - Method in class ome.util.SqlAction.Impl
addMessageWithinDbPatchStart(String, int, String) - Method in interface ome.util.SqlAction: Add a unique message to the DB patch table within the current patch.
addMessageWithinDbPatchStart(String, int, String) - Method in class ome.util.SqlAction.Impl
addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.experiment.Experiment: use instead of setMicrobeamManipulation .
addMicrobeamManipulationSet(Collection<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment: use like addMicrobeamManipulation.
addMimetypes(Collection<String>, MapSqlParameterSource) - Method in class ome.util.SqlAction.Impl: Returns the "and_mimetype" clause which must be appended to a given query.
addNamespaceAnnotationLink(NamespaceAnnotationLink) - Method in class ome.model.meta.Namespace: use instead of setAnnotationLinks .
addNamespaceAnnotationLink(NamespaceAnnotationLink, boolean) - Method in class ome.model.meta.Namespace: Adds a ome.model.annotations.NamespaceAnnotationLink to annotationLinks, allowing for recursion -- whether or not addNamespaceAnnotationLink will be called on the addition if it is loaded
addNamespaceAnnotationLinkSet(Collection<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace: use like addNamespaceAnnotationLink.
addNodeAnnotationLink(NodeAnnotationLink) - Method in class ome.model.meta.Node: use instead of setAnnotationLinks .
addNodeAnnotationLink(NodeAnnotationLink, boolean) - Method in class ome.model.meta.Node: Adds a ome.model.annotations.NodeAnnotationLink to annotationLinks, allowing for recursion -- whether or not addNodeAnnotationLink will be called on the addition if it is loaded
addNodeAnnotationLinkSet(Collection<NodeAnnotationLink>) - Method in class ome.model.meta.Node: use like addNodeAnnotationLink.
addObjective(Objective) - Method in class ome.model.acquisition.Instrument: use instead of setObjective .
addObjectiveAnnotationLink(ObjectiveAnnotationLink) - Method in class ome.model.acquisition.Objective: use instead of setAnnotationLinks .
addObjectiveAnnotationLink(ObjectiveAnnotationLink, boolean) - Method in class ome.model.acquisition.Objective: Adds a ome.model.annotations.ObjectiveAnnotationLink to annotationLinks, allowing for recursion -- whether or not addObjectiveAnnotationLink will be called on the addition if it is loaded
addObjectiveAnnotationLinkSet(Collection<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective: use like addObjectiveAnnotationLink.
addObjectiveSet(Collection<Objective>) - Method in class ome.model.acquisition.Instrument: use like addObjective.
addOriginalFileAnnotationLink(OriginalFileAnnotationLink) - Method in class ome.model.core.OriginalFile: use instead of setAnnotationLinks .
addOriginalFileAnnotationLink(OriginalFileAnnotationLink, boolean) - Method in class ome.model.core.OriginalFile: Adds a ome.model.annotations.OriginalFileAnnotationLink to annotationLinks, allowing for recursion -- whether or not addOriginalFileAnnotationLink will be called on the addition if it is loaded
addOriginalFileAnnotationLinkSet(Collection<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile: use like addOriginalFileAnnotationLink.
addOTF(OTF) - Method in class ome.model.acquisition.Instrument: use instead of setOtf .
addOTFSet(Collection<OTF>) - Method in class ome.model.acquisition.Instrument: use like addOTF.
addPixels(Pixels) - Method in class ome.model.core.Image: use instead of setPixels .
addPixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.OriginalFile: use instead of setPixelsFileMaps .
addPixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.Pixels: use instead of setPixelsFileMaps .
addPixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.OriginalFile: Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps, allowing for recursion -- whether or not addPixelsOriginalFileMap will be called on the addition if it is loaded
addPixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.Pixels: Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps, allowing for recursion -- whether or not addPixelsOriginalFileMap will be called on the addition if it is loaded
addPixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile: use like addPixelsOriginalFileMap.
addPixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels: use like addPixelsOriginalFileMap.
addPixelsSet(Collection<Pixels>) - Method in class ome.model.core.Image: use like addPixels.
addPlaneInfo(PlaneInfo) - Method in class ome.model.core.Pixels: use instead of setPlaneInfo .
addPlaneInfoAnnotationLink(PlaneInfoAnnotationLink) - Method in class ome.model.core.PlaneInfo: use instead of setAnnotationLinks .
addPlaneInfoAnnotationLink(PlaneInfoAnnotationLink, boolean) - Method in class ome.model.core.PlaneInfo: Adds a ome.model.annotations.PlaneInfoAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlaneInfoAnnotationLink will be called on the addition if it is loaded
addPlaneInfoAnnotationLinkSet(Collection<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo: use like addPlaneInfoAnnotationLink.
addPlaneInfoSet(Collection<PlaneInfo>) - Method in class ome.model.core.Pixels: use like addPlaneInfo.
addPlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.Plate: use instead of setPlateAcquisitions .
addPlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink) - Method in class ome.model.screen.PlateAcquisition: use instead of setAnnotationLinks .
addPlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink, boolean) - Method in class ome.model.screen.PlateAcquisition: Adds a ome.model.annotations.PlateAcquisitionAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAcquisitionAnnotationLink will be called on the addition if it is loaded
addPlateAcquisitionAnnotationLinkSet(Collection<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition: use like addPlateAcquisitionAnnotationLink.
addPlateAcquisitionSet(Collection<PlateAcquisition>) - Method in class ome.model.screen.Plate: use like addPlateAcquisition.
addPlateAnnotationLink(PlateAnnotationLink) - Method in class ome.model.screen.Plate: use instead of setAnnotationLinks .
addPlateAnnotationLink(PlateAnnotationLink, boolean) - Method in class ome.model.screen.Plate: Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAnnotationLink will be called on the addition if it is loaded
addPlateAnnotationLinkSet(Collection<PlateAnnotationLink>) - Method in class ome.model.screen.Plate: use like addPlateAnnotationLink.
addProjectAnnotationLink(ProjectAnnotationLink) - Method in class ome.model.containers.Project: use instead of setAnnotationLinks .
addProjectAnnotationLink(ProjectAnnotationLink, boolean) - Method in class ome.model.containers.Project: Adds a ome.model.annotations.ProjectAnnotationLink to annotationLinks, allowing for recursion -- whether or not addProjectAnnotationLink will be called on the addition if it is loaded
addProjectAnnotationLinkSet(Collection<ProjectAnnotationLink>) - Method in class ome.model.containers.Project: use like addProjectAnnotationLink.
addProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Dataset: use instead of setProjectLinks .
addProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Project: use instead of setDatasetLinks .
addProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Dataset: Adds a ome.model.containers.ProjectDatasetLink to projectLinks, allowing for recursion -- whether or not addProjectDatasetLink will be called on the addition if it is loaded
addProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Project: Adds a ome.model.containers.ProjectDatasetLink to datasetLinks, allowing for recursion -- whether or not addProjectDatasetLink will be called on the addition if it is loaded
addProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset: use like addProjectDatasetLink.
addProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Project: use like addProjectDatasetLink.
addProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef: use instead of setProjections .
addProjectionDefSet(Collection<ProjectionDef>) - Method in class ome.model.display.RenderingDef: use like addProjectionDef.
addReagent(Reagent) - Method in class ome.model.screen.Screen: use instead of setReagents .
addReagentAnnotationLink(ReagentAnnotationLink) - Method in class ome.model.screen.Reagent: use instead of setAnnotationLinks .
addReagentAnnotationLink(ReagentAnnotationLink, boolean) - Method in class ome.model.screen.Reagent: Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks, allowing for recursion -- whether or not addReagentAnnotationLink will be called on the addition if it is loaded
addReagentAnnotationLinkSet(Collection<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent: use like addReagentAnnotationLink.
addReagentSet(Collection<Reagent>) - Method in class ome.model.screen.Screen: use like addReagent.
addRenderingDef(RenderingDef) - Method in class ome.model.core.Pixels: use instead of setSettings .
addRenderingDefSet(Collection<RenderingDef>) - Method in class ome.model.core.Pixels: use like addRenderingDef.
addRoi(Roi) - Method in class ome.model.core.Image: use instead of setRois .
addRoiAnnotationLink(RoiAnnotationLink) - Method in class ome.model.roi.Roi: use instead of setAnnotationLinks .
addRoiAnnotationLink(RoiAnnotationLink, boolean) - Method in class ome.model.roi.Roi: Adds a ome.model.annotations.RoiAnnotationLink to annotationLinks, allowing for recursion -- whether or not addRoiAnnotationLink will be called on the addition if it is loaded
addRoiAnnotationLinkSet(Collection<RoiAnnotationLink>) - Method in class ome.model.roi.Roi: use like addRoiAnnotationLink.
addRoiSet(Collection<Roi>) - Method in class ome.model.core.Image: use like addRoi.
addScreenAnnotationLink(ScreenAnnotationLink) - Method in class ome.model.screen.Screen: use instead of setAnnotationLinks .
addScreenAnnotationLink(ScreenAnnotationLink, boolean) - Method in class ome.model.screen.Screen: Adds a ome.model.annotations.ScreenAnnotationLink to annotationLinks, allowing for recursion -- whether or not addScreenAnnotationLink will be called on the addition if it is loaded
addScreenAnnotationLinkSet(Collection<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen: use like addScreenAnnotationLink.
addScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Plate: use instead of setScreenLinks .
addScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Screen: use instead of setPlateLinks .
addScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Plate: Adds a ome.model.screen.ScreenPlateLink to screenLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded
addScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Screen: Adds a ome.model.screen.ScreenPlateLink to plateLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded
addScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Plate: use like addScreenPlateLink.
addScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Screen: use like addScreenPlateLink.
addSeen(Object) - Method in class ome.util.ContextFilter
addSession(Session) - Method in class ome.model.meta.Node: use instead of setSessions .
addSessionAnnotationLink(SessionAnnotationLink) - Method in class ome.model.meta.Session: use instead of setAnnotationLinks .
addSessionAnnotationLink(SessionAnnotationLink, boolean) - Method in class ome.model.meta.Session: Adds a ome.model.annotations.SessionAnnotationLink to annotationLinks, allowing for recursion -- whether or not addSessionAnnotationLink will be called on the addition if it is loaded
addSessionAnnotationLinkSet(Collection<SessionAnnotationLink>) - Method in class ome.model.meta.Session: use like addSessionAnnotationLink.
addSessionSet(Collection<Session>) - Method in class ome.model.meta.Node: use like addSession.
addSet(String, Set) - Method in class ome.parameters.Parameters
addShape(Shape) - Method in class ome.model.roi.Roi: use instead of setShapes .
addShapeAnnotationLink(ShapeAnnotationLink) - Method in class ome.model.roi.Shape: use instead of setAnnotationLinks .
addShapeAnnotationLink(ShapeAnnotationLink, boolean) - Method in class ome.model.roi.Shape: Adds a ome.model.annotations.ShapeAnnotationLink to annotationLinks, allowing for recursion -- whether or not addShapeAnnotationLink will be called on the addition if it is loaded
addShapeAnnotationLinkSet(Collection<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape: use like addShapeAnnotationLink.
addShapeSet(Collection<Shape>) - Method in class ome.model.roi.Roi: use like addShape.
addString(String, String) - Method in class ome.parameters.Parameters
addThumbnail(Thumbnail) - Method in class ome.model.core.Pixels: use instead of setThumbnails .
addThumbnailSet(Collection<Thumbnail>) - Method in class ome.model.core.Pixels: use like addThumbnail.
addViolation(ACLViolation) - Method in exception ome.conditions.acl.CollectedACLViolations
addWell(Well) - Method in class ome.model.screen.Plate: use instead of setWells .
addWellAnnotationLink(WellAnnotationLink) - Method in class ome.model.screen.Well: use instead of setAnnotationLinks .
addWellAnnotationLink(WellAnnotationLink, boolean) - Method in class ome.model.screen.Well: Adds a ome.model.annotations.WellAnnotationLink to annotationLinks, allowing for recursion -- whether or not addWellAnnotationLink will be called on the addition if it is loaded
addWellAnnotationLinkSet(Collection<WellAnnotationLink>) - Method in class ome.model.screen.Well: use like addWellAnnotationLink.
addWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Reagent: use instead of setWellLinks .
addWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Well: use instead of setReagentLinks .
addWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Reagent: Adds a ome.model.screen.WellReagentLink to wellLinks, allowing for recursion -- whether or not addWellReagentLink will be called on the addition if it is loaded
addWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Well: Adds a ome.model.screen.WellReagentLink to reagentLinks, allowing for recursion -- whether or not addWellReagentLink will be called on the addition if it is loaded
addWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Reagent: use like addWellReagentLink.
addWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Well: use like addWellReagentLink.
addWellSample(WellSample) - Method in class ome.model.core.Image: use instead of setWellSamples .
addWellSample(WellSample) - Method in class ome.model.screen.PlateAcquisition: use instead of setWellSample .
addWellSample(WellSample) - Method in class ome.model.screen.Well: use instead of setWellSamples .
addWellSampleSet(Collection<WellSample>) - Method in class ome.model.core.Image: use like addWellSample.
addWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.PlateAcquisition: use like addWellSample.
addWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.Well: use like addWellSample.
addWellSet(Collection<Well>) - Method in class ome.model.screen.Plate: use like addWell.
AdminPrivilege - Class in ome.model.enums
AdminPrivilege() - Constructor for class ome.model.enums.AdminPrivilege
AdminPrivilege(Long) - Constructor for class ome.model.enums.AdminPrivilege
AdminPrivilege(Long, boolean) - Constructor for class ome.model.enums.AdminPrivilege: Main constructor.
AdminPrivilege(String) - Constructor for class ome.model.enums.AdminPrivilege
AdminPrivilege.Details - Class in ome.model.enums
AffineTransform - Class in ome.model.roi: These filter definitions are used by the security system to eliminate non-readable objects from queries.
AffineTransform() - Constructor for class ome.model.roi.AffineTransform
AffineTransform(Double, Double, Double, Double, Double, Double) - Constructor for class ome.model.roi.AffineTransform
AffineTransform(Long) - Constructor for class ome.model.roi.AffineTransform
AffineTransform(Long, boolean) - Constructor for class ome.model.roi.AffineTransform: Main constructor.
AffineTransform.Details - Class in ome.model.roi
afterFilter(String, Object) - Method in class ome.util.ContextFilter
afterPropertiesSet() - Method in class ome.util.MapPut
airPressure - Variable in class ome.model.acquisition.ImagingEnvironment
AIRPRESSURE - Static variable in class ome.model.acquisition.ImagingEnvironment
ALGORITHM - Static variable in class ome.parameters.Parameters: named parameter "algorithm".
allExps() - Method in class ome.parameters.Parameters
alpha - Variable in class ome.model.core.Channel
alpha - Variable in class ome.model.display.ChannelBinding
alpha - Variable in class ome.model.screen.Well
ALPHA - Static variable in class ome.model.core.Channel
ALPHA - Static variable in class ome.model.display.ChannelBinding
ALPHA - Static variable in class ome.model.screen.Well
amplificationGain - Variable in class ome.model.acquisition.Detector
AMPLIFICATIONGAIN - Static variable in class ome.model.acquisition.Detector
ANGSTROM - ome.model.enums.UnitsLength
ANNOTATE - ome.model.internal.Permissions.Right
ANNOTATERESTRICTION - Static variable in class ome.model.internal.Permissions
Annotation - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Annotation() - Constructor for class ome.model.annotations.Annotation
Annotation(Long) - Constructor for class ome.model.annotations.Annotation
Annotation(Long, boolean) - Constructor for class ome.model.annotations.Annotation: Main constructor.
Annotation.Details - Class in ome.model.annotations
AnnotationAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
AnnotationAnnotationLink() - Constructor for class ome.model.annotations.AnnotationAnnotationLink
AnnotationAnnotationLink(Long) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
AnnotationAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.AnnotationAnnotationLink: Main constructor.
AnnotationAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
AnnotationAnnotationLink.Details - Class in ome.model.annotations
annotationLinks - Variable in class ome.model.acquisition.Detector
annotationLinks - Variable in class ome.model.acquisition.Dichroic
annotationLinks - Variable in class ome.model.acquisition.Filter
annotationLinks - Variable in class ome.model.acquisition.Instrument
annotationLinks - Variable in class ome.model.acquisition.LightPath
annotationLinks - Variable in class ome.model.acquisition.LightSource
annotationLinks - Variable in class ome.model.acquisition.Objective
annotationLinks - Variable in class ome.model.annotations.Annotation
annotationLinks - Variable in class ome.model.containers.Dataset
annotationLinks - Variable in class ome.model.containers.Folder
annotationLinks - Variable in class ome.model.containers.Project
annotationLinks - Variable in class ome.model.core.Channel
annotationLinks - Variable in class ome.model.core.Image
annotationLinks - Variable in class ome.model.core.OriginalFile
annotationLinks - Variable in class ome.model.core.PlaneInfo
annotationLinks - Variable in class ome.model.fs.Fileset
annotationLinks - Variable in class ome.model.meta.Experimenter
annotationLinks - Variable in class ome.model.meta.ExperimenterGroup
annotationLinks - Variable in class ome.model.meta.Namespace
annotationLinks - Variable in class ome.model.meta.Node
annotationLinks - Variable in class ome.model.meta.Session
annotationLinks - Variable in class ome.model.roi.Roi
annotationLinks - Variable in class ome.model.roi.Shape
annotationLinks - Variable in class ome.model.screen.Plate
annotationLinks - Variable in class ome.model.screen.PlateAcquisition
annotationLinks - Variable in class ome.model.screen.Reagent
annotationLinks - Variable in class ome.model.screen.Screen
annotationLinks - Variable in class ome.model.screen.Well
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
ANNOTATIONLINKS - Static variable in class ome.model.core.Image
ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Detector
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Dichroic
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Instrument
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightSource
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Objective
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.annotations.Annotation
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Project
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Channel
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.OriginalFile
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.PlaneInfo
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.fs.Fileset
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Experimenter
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.ExperimenterGroup
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Namespace
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Node
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Session
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Roi
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Shape
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Plate
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.PlateAcquisition
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Reagent
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Screen
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Well
ApiUsageException - Exception in ome.conditions: Alerts a user to a misuse of an Omero method call.
ApiUsageException(String) - Constructor for exception ome.conditions.ApiUsageException
Arc - Class in ome.model.acquisition
Arc() - Constructor for class ome.model.acquisition.Arc
Arc(Long) - Constructor for class ome.model.acquisition.Arc
Arc(Long, boolean) - Constructor for class ome.model.acquisition.Arc: Main constructor.
Arc(ArcType) - Constructor for class ome.model.acquisition.Arc
archived - Variable in class ome.model.core.Image
ARCHIVED - Static variable in class ome.model.core.Image
ArcType - Class in ome.model.enums
ArcType() - Constructor for class ome.model.enums.ArcType
ArcType(Long) - Constructor for class ome.model.enums.ArcType
ArcType(Long, boolean) - Constructor for class ome.model.enums.ArcType: Main constructor.
ArcType(String) - Constructor for class ome.model.enums.ArcType
ArcType.Details - Class in ome.model.enums
args() - Method in class ome.util.SqlAction.DeleteLog
asBigInteger() - Method in class ome.util.Counter
assemble(Serializable, Object) - Method in class ome.model.units.GenericEnumType
ASTRONOMICALUNIT - ome.model.enums.UnitsLength
atime - Variable in class ome.model.core.OriginalFile
ATIME - Static variable in class ome.model.core.OriginalFile
ATMOSPHERE - ome.model.enums.UnitsPressure
attenuation - Variable in class ome.model.acquisition.LightSettings
ATTENUATION - Static variable in class ome.model.acquisition.LightSettings
ATTOHERTZ - ome.model.enums.UnitsFrequency
ATTOMETER - ome.model.enums.UnitsLength
ATTOPASCAL - ome.model.enums.UnitsPressure
ATTOSECOND - ome.model.enums.UnitsTime
ATTOVOLT - ome.model.enums.UnitsElectricPotential
ATTOWATT - ome.model.enums.UnitsPower
AuthenticationException - Exception in ome.conditions: Invalid username and/or credential provided.
AuthenticationException(String) - Constructor for exception ome.conditions.AuthenticationException
axis - Variable in class ome.model.display.ProjectionDef
AXIS - Static variable in class ome.model.display.ProjectionDef

B

backOff - Variable in exception ome.conditions.ConcurrencyException
BAR - ome.model.enums.UnitsPressure
BasicAnnotation - Class in ome.model.annotations
BasicAnnotation() - Constructor for class ome.model.annotations.BasicAnnotation
BasicAnnotation(Long) - Constructor for class ome.model.annotations.BasicAnnotation
BasicAnnotation(Long, boolean) - Constructor for class ome.model.annotations.BasicAnnotation: Main constructor.
beforeFilter(String, Object) - Method in class ome.util.ContextFilter
BigResult - Exception in ome.model.units: Checked exception which is thrown from unit methods which can possibly overflow.
BigResult(BigDecimal, String) - Constructor for exception ome.model.units.BigResult
binning - Variable in class ome.model.acquisition.DetectorSettings
Binning - Class in ome.model.enums
Binning() - Constructor for class ome.model.enums.Binning
Binning(Long) - Constructor for class ome.model.enums.Binning
Binning(Long, boolean) - Constructor for class ome.model.enums.Binning: Main constructor.
Binning(String) - Constructor for class ome.model.enums.Binning
BINNING - Static variable in class ome.model.acquisition.DetectorSettings
Binning.Details - Class in ome.model.enums
bit(Permissions.Flag) - Static method in class ome.model.internal.Permissions: returns the order of the bit representing the given Permissions.Flag.
bit(Permissions.Role, Permissions.Right) - Static method in class ome.model.internal.Permissions: returns the order of the bit representing the given Permissions.Role and Permissions.Right.
BIT - Static variable in class ome.util.PixelData: Identifies the type used to store pixel values.
bitResolution - Variable in class ome.model.display.QuantumDef
BITRESOLUTION - Static variable in class ome.model.display.QuantumDef
bitSize - Variable in class ome.model.enums.PixelsType
BITSIZE - Static variable in class ome.model.enums.PixelsType
blue - Variable in class ome.model.core.Channel
blue - Variable in class ome.model.display.ChannelBinding
blue - Variable in class ome.model.screen.Well
BLUE - Static variable in class ome.model.core.Channel
BLUE - Static variable in class ome.model.display.ChannelBinding
BLUE - Static variable in class ome.model.screen.Well
BooleanAnnotation - Class in ome.model.annotations
BooleanAnnotation() - Constructor for class ome.model.annotations.BooleanAnnotation
BooleanAnnotation(Long) - Constructor for class ome.model.annotations.BooleanAnnotation
BooleanAnnotation(Long, boolean) - Constructor for class ome.model.annotations.BooleanAnnotation: Main constructor.
boolValue - Variable in class ome.model.annotations.BooleanAnnotation
BOOLVALUE - Static variable in class ome.model.annotations.BooleanAnnotation
bySymbol(String) - Static method in enum ome.model.enums.UnitsElectricPotential
bySymbol(String) - Static method in enum ome.model.enums.UnitsFrequency
bySymbol(String) - Static method in enum ome.model.enums.UnitsLength
bySymbol(String) - Static method in enum ome.model.enums.UnitsPower
bySymbol(String) - Static method in enum ome.model.enums.UnitsPressure
bySymbol(String) - Static method in enum ome.model.enums.UnitsTemperature
bySymbol(String) - Static method in enum ome.model.enums.UnitsTime
BYTE - Static variable in class ome.util.PixelData: Identifies the type used to store pixel values.
bytes - Variable in class ome.model.roi.Mask
BYTES - Static variable in class ome.model.roi.Mask
bytesPerPixel - Variable in class ome.util.PixelData: The number of bytes per pixel.
bytesPerPixel() - Method in class ome.util.PixelData: Returns the number of byte per pixel for the pixel data.

C

c2c() - Method in class ome.util.ModelMapper: TODO identity versus null mappings
cache() - Method in class ome.parameters.Parameters: Deprecated.
experimental: may be wholly removed in next major version
cacheable - Variable in class ome.parameters.Options
calibratedMagnification - Variable in class ome.model.acquisition.Objective
CALIBRATEDMAGNIFICATION - Static variable in class ome.model.acquisition.Objective
call(IObject) - Method in interface ome.util.CBlock: invoke this block.
call(IObject) - Method in class ome.util.IdBlock
CBlock<E> - Interface in ome.util: Block template used to "C"ollect the results of some function called on each IObject in a collection.
cdEnd - Variable in class ome.model.display.QuantumDef
CDEND - Static variable in class ome.model.display.QuantumDef
cdStart - Variable in class ome.model.display.QuantumDef
CDSTART - Static variable in class ome.model.display.QuantumDef
CELSIUS - ome.model.enums.UnitsTemperature
CENTIBAR - ome.model.enums.UnitsPressure
CENTIHERTZ - ome.model.enums.UnitsFrequency
CENTIMETER - ome.model.enums.UnitsLength
CENTIPASCAL - ome.model.enums.UnitsPressure
CENTISECOND - ome.model.enums.UnitsTime
CENTIVOLT - ome.model.enums.UnitsElectricPotential
CENTIWATT - ome.model.enums.UnitsPower
CGLIB_IDENTIFIER - Static variable in class ome.util.Utils
changeGroupPermissions(Long, Long) - Method in interface ome.util.SqlAction
changeGroupPermissions(Long, Long) - Method in class ome.util.SqlAction.Impl
changeTablePermissionsForGroup(String, Long, Long) - Method in interface ome.util.SqlAction
changeTablePermissionsForGroup(String, Long, Long) - Method in class ome.util.SqlAction.Impl
Channel - Class in ome.model.core: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Channel() - Constructor for class ome.model.core.Channel
Channel(Long) - Constructor for class ome.model.core.Channel
Channel(Long, boolean) - Constructor for class ome.model.core.Channel: Main constructor.
Channel(LogicalChannel, Pixels) - Constructor for class ome.model.core.Channel
Channel.Details - Class in ome.model.core
ChannelAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ChannelAnnotationLink() - Constructor for class ome.model.annotations.ChannelAnnotationLink
ChannelAnnotationLink(Long) - Constructor for class ome.model.annotations.ChannelAnnotationLink
ChannelAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ChannelAnnotationLink: Main constructor.
ChannelAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ChannelAnnotationLink
ChannelAnnotationLink.Details - Class in ome.model.annotations
channelBinding - Variable in class ome.model.display.CodomainMapContext
ChannelBinding - Class in ome.model.display: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ChannelBinding() - Constructor for class ome.model.display.ChannelBinding
ChannelBinding(Long) - Constructor for class ome.model.display.ChannelBinding
ChannelBinding(Long, boolean) - Constructor for class ome.model.display.ChannelBinding: Main constructor.
ChannelBinding(RenderingDef, Family, Double, Double, Double, Boolean, Boolean, Integer, Integer, Integer, Integer) - Constructor for class ome.model.display.ChannelBinding
CHANNELBINDING - Static variable in class ome.model.display.CodomainMapContext
ChannelBinding.Details - Class in ome.model.display
channels - Variable in class ome.model.core.LogicalChannel
channels - Variable in class ome.model.core.Pixels
CHANNELS - Static variable in class ome.model.core.LogicalChannel
CHANNELS - Static variable in class ome.model.core.Pixels
ChecksumAlgorithm - Class in ome.model.enums
ChecksumAlgorithm() - Constructor for class ome.model.enums.ChecksumAlgorithm
ChecksumAlgorithm(Long) - Constructor for class ome.model.enums.ChecksumAlgorithm
ChecksumAlgorithm(Long, boolean) - Constructor for class ome.model.enums.ChecksumAlgorithm: Main constructor.
ChecksumAlgorithm(String) - Constructor for class ome.model.enums.ChecksumAlgorithm
ChecksumAlgorithm.Details - Class in ome.model.enums
CHGRPRESTRICTION - Static variable in class ome.model.internal.Permissions
child - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
child - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
child - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
child - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
child - Variable in class ome.model.annotations.AnnotationAnnotationLink
child - Variable in class ome.model.annotations.ChannelAnnotationLink
child - Variable in class ome.model.annotations.DatasetAnnotationLink
child - Variable in class ome.model.annotations.DetectorAnnotationLink
child - Variable in class ome.model.annotations.DichroicAnnotationLink
child - Variable in class ome.model.annotations.ExperimenterAnnotationLink
child - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
child - Variable in class ome.model.annotations.FilesetAnnotationLink
child - Variable in class ome.model.annotations.FilterAnnotationLink
child - Variable in class ome.model.annotations.FolderAnnotationLink
child - Variable in class ome.model.annotations.ImageAnnotationLink
child - Variable in class ome.model.annotations.InstrumentAnnotationLink
child - Variable in class ome.model.annotations.LightPathAnnotationLink
child - Variable in class ome.model.annotations.LightSourceAnnotationLink
child - Variable in class ome.model.annotations.NamespaceAnnotationLink
child - Variable in class ome.model.annotations.NodeAnnotationLink
child - Variable in class ome.model.annotations.ObjectiveAnnotationLink
child - Variable in class ome.model.annotations.OriginalFileAnnotationLink
child - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
child - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
child - Variable in class ome.model.annotations.PlateAnnotationLink
child - Variable in class ome.model.annotations.ProjectAnnotationLink
child - Variable in class ome.model.annotations.ReagentAnnotationLink
child - Variable in class ome.model.annotations.RoiAnnotationLink
child - Variable in class ome.model.annotations.ScreenAnnotationLink
child - Variable in class ome.model.annotations.SessionAnnotationLink
child - Variable in class ome.model.annotations.ShapeAnnotationLink
child - Variable in class ome.model.annotations.WellAnnotationLink
child - Variable in class ome.model.containers.DatasetImageLink
child - Variable in class ome.model.containers.FolderImageLink
child - Variable in class ome.model.containers.FolderRoiLink
child - Variable in class ome.model.containers.ProjectDatasetLink
child - Variable in class ome.model.core.PixelsOriginalFileMap
child - Variable in class ome.model.fs.FilesetJobLink
child - Variable in class ome.model.jobs.JobOriginalFileLink
child - Variable in class ome.model.meta.GroupExperimenterMap
child - Variable in class ome.model.meta.ShareMember
child - Variable in class ome.model.screen.ScreenPlateLink
child - Variable in class ome.model.screen.WellReagentLink
child() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
child() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
child() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
child() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
child() - Method in class ome.model.annotations.AnnotationAnnotationLink
child() - Method in class ome.model.annotations.ChannelAnnotationLink
child() - Method in class ome.model.annotations.DatasetAnnotationLink
child() - Method in class ome.model.annotations.DetectorAnnotationLink
child() - Method in class ome.model.annotations.DichroicAnnotationLink
child() - Method in class ome.model.annotations.ExperimenterAnnotationLink
child() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
child() - Method in class ome.model.annotations.FilesetAnnotationLink
child() - Method in class ome.model.annotations.FilterAnnotationLink
child() - Method in class ome.model.annotations.FolderAnnotationLink
child() - Method in class ome.model.annotations.ImageAnnotationLink
child() - Method in class ome.model.annotations.InstrumentAnnotationLink
child() - Method in class ome.model.annotations.LightPathAnnotationLink
child() - Method in class ome.model.annotations.LightSourceAnnotationLink
child() - Method in class ome.model.annotations.NamespaceAnnotationLink
child() - Method in class ome.model.annotations.NodeAnnotationLink
child() - Method in class ome.model.annotations.ObjectiveAnnotationLink
child() - Method in class ome.model.annotations.OriginalFileAnnotationLink
child() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
child() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
child() - Method in class ome.model.annotations.PlateAnnotationLink
child() - Method in class ome.model.annotations.ProjectAnnotationLink
child() - Method in class ome.model.annotations.ReagentAnnotationLink
child() - Method in class ome.model.annotations.RoiAnnotationLink
child() - Method in class ome.model.annotations.ScreenAnnotationLink
child() - Method in class ome.model.annotations.SessionAnnotationLink
child() - Method in class ome.model.annotations.ShapeAnnotationLink
child() - Method in class ome.model.annotations.WellAnnotationLink
child() - Method in class ome.model.containers.DatasetImageLink
child() - Method in class ome.model.containers.FolderImageLink
child() - Method in class ome.model.containers.FolderRoiLink
child() - Method in class ome.model.containers.ProjectDatasetLink
child() - Method in class ome.model.core.PixelsOriginalFileMap
child() - Method in class ome.model.fs.FilesetJobLink
child() - Method in class ome.model.jobs.JobOriginalFileLink
child() - Method in class ome.model.meta.GroupExperimenterMap
child() - Method in class ome.model.meta.ShareMember
child() - Method in class ome.model.screen.ScreenPlateLink
child() - Method in class ome.model.screen.WellReagentLink
CHILD - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
CHILD - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
CHILD - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
CHILD - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
CHILD - Static variable in class ome.model.annotations.AnnotationAnnotationLink
CHILD - Static variable in class ome.model.annotations.ChannelAnnotationLink
CHILD - Static variable in class ome.model.annotations.DatasetAnnotationLink
CHILD - Static variable in class ome.model.annotations.DetectorAnnotationLink
CHILD - Static variable in class ome.model.annotations.DichroicAnnotationLink
CHILD - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
CHILD - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
CHILD - Static variable in class ome.model.annotations.FilesetAnnotationLink
CHILD - Static variable in class ome.model.annotations.FilterAnnotationLink
CHILD - Static variable in class ome.model.annotations.FolderAnnotationLink
CHILD - Static variable in class ome.model.annotations.ImageAnnotationLink
CHILD - Static variable in class ome.model.annotations.InstrumentAnnotationLink
CHILD - Static variable in class ome.model.annotations.LightPathAnnotationLink
CHILD - Static variable in class ome.model.annotations.LightSourceAnnotationLink
CHILD - Static variable in class ome.model.annotations.NamespaceAnnotationLink
CHILD - Static variable in class ome.model.annotations.NodeAnnotationLink
CHILD - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
CHILD - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
CHILD - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
CHILD - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
CHILD - Static variable in class ome.model.annotations.PlateAnnotationLink
CHILD - Static variable in class ome.model.annotations.ProjectAnnotationLink
CHILD - Static variable in class ome.model.annotations.ReagentAnnotationLink
CHILD - Static variable in class ome.model.annotations.RoiAnnotationLink
CHILD - Static variable in class ome.model.annotations.ScreenAnnotationLink
CHILD - Static variable in class ome.model.annotations.SessionAnnotationLink
CHILD - Static variable in class ome.model.annotations.ShapeAnnotationLink
CHILD - Static variable in class ome.model.annotations.WellAnnotationLink
CHILD - Static variable in class ome.model.containers.DatasetImageLink
CHILD - Static variable in class ome.model.containers.FolderImageLink
CHILD - Static variable in class ome.model.containers.FolderRoiLink
CHILD - Static variable in class ome.model.containers.ProjectDatasetLink
CHILD - Static variable in class ome.model.core.PixelsOriginalFileMap
CHILD - Static variable in class ome.model.fs.FilesetJobLink
CHILD - Static variable in class ome.model.jobs.JobOriginalFileLink
CHILD - Static variable in class ome.model.meta.GroupExperimenterMap
CHILD - Static variable in class ome.model.meta.ShareMember
CHILD - Static variable in class ome.model.screen.ScreenPlateLink
CHILD - Static variable in class ome.model.screen.WellReagentLink
childFolders - Variable in class ome.model.containers.Folder
CHILDFOLDERS - Static variable in class ome.model.containers.Folder
CHOWNRESTRICTION - Static variable in class ome.model.internal.Permissions
CLASS - Static variable in class ome.parameters.Parameters: named parameter "class".
clearAnnotationLinks() - Method in class ome.model.acquisition.Detector: clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Dichroic: clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Filter: clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Instrument: clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.LightPath: clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.LightSource: clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Objective: clears the set.
clearAnnotationLinks() - Method in class ome.model.annotations.Annotation: clears the set.
clearAnnotationLinks() - Method in class ome.model.containers.Dataset: clears the set.
clearAnnotationLinks() - Method in class ome.model.containers.Folder: clears the set.
clearAnnotationLinks() - Method in class ome.model.containers.Project: clears the set.
clearAnnotationLinks() - Method in class ome.model.core.Channel: clears the set.
clearAnnotationLinks() - Method in class ome.model.core.Image: clears the set.
clearAnnotationLinks() - Method in class ome.model.core.OriginalFile: clears the set.
clearAnnotationLinks() - Method in class ome.model.core.PlaneInfo: clears the set.
clearAnnotationLinks() - Method in class ome.model.fs.Fileset: clears the set.
clearAnnotationLinks() - Method in interface ome.model.IAnnotated
clearAnnotationLinks() - Method in class ome.model.meta.Experimenter: clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup: clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.Namespace: clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.Node: clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.Session: clears the set.
clearAnnotationLinks() - Method in class ome.model.roi.Roi: clears the set.
clearAnnotationLinks() - Method in class ome.model.roi.Shape: clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Plate: clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition: clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Reagent: clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Screen: clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Well: clears the set.
clearChannels() - Method in class ome.model.core.LogicalChannel: clears the set.
clearChannels() - Method in class ome.model.core.Pixels: clears the set.
clearChildFolders() - Method in class ome.model.containers.Folder: clears the set.
clearDatasetLinks() - Method in class ome.model.containers.Project: clears the set.
clearDatasetLinks() - Method in class ome.model.core.Image: clears the set.
clearDetector() - Method in class ome.model.acquisition.Instrument: clears the set.
clearDichroic() - Method in class ome.model.acquisition.Instrument: clears the set.
clearEmissionFilterLinks() - Method in class ome.model.acquisition.Filter: clears the set.
clearEmissionFilterLinks() - Method in class ome.model.acquisition.FilterSet: clears the set.
clearEmissionFilterLinks() - Method in class ome.model.acquisition.LightPath: clears the set.
clearEvents() - Method in class ome.model.meta.Session: clears the set.
clearExcitationFilterLinks() - Method in class ome.model.acquisition.Filter: clears the set.
clearExcitationFilterLinks() - Method in class ome.model.acquisition.FilterSet: clears the set.
clearExcitationFilterLinks() - Method in class ome.model.acquisition.LightPath: clears the set.
clearExperimenterGroupLinks() - Method in class ome.model.meta.Experimenter: clears the set.
clearExperimenterLinks() - Method in class ome.model.meta.ExperimenterGroup: clears the set.
clearFilesetEntries() - Method in class ome.model.core.OriginalFile: clears the set.
clearFilter() - Method in class ome.model.acquisition.Instrument: clears the set.
clearFiltered() - Method in class ome.model.internal.Details: all currently marked collections are released.
clearFilterSet() - Method in class ome.model.acquisition.Instrument: clears the set.
clearFolderLinks() - Method in class ome.model.core.Image: clears the set.
clearFolderLinks() - Method in class ome.model.roi.Roi: clears the set.
clearImageLinks() - Method in class ome.model.containers.Dataset: clears the set.
clearImageLinks() - Method in class ome.model.containers.Folder: clears the set.
clearImages() - Method in class ome.model.fs.Fileset: clears the set.
clearJobLinks() - Method in class ome.model.fs.Fileset: clears the set.
clearLightSource() - Method in class ome.model.acquisition.Instrument: clears the set.
clearLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation: clears the set.
clearLogs() - Method in class ome.model.meta.Event: clears the set.
clearMicrobeamManipulation() - Method in class ome.model.experiment.Experiment: clears the set.
clearObjective() - Method in class ome.model.acquisition.Instrument: clears the set.
clearOriginalFileLinks() - Method in class ome.model.core.Pixels: clears the set.
clearOriginalFileLinks() - Method in class ome.model.jobs.Job: clears the set.
clearOtf() - Method in class ome.model.acquisition.Instrument: clears the set.
clearPermissionsBit(String, long, int) - Method in interface ome.util.SqlAction: Sets the given permissions bit to 0.
clearPermissionsBit(String, long, int) - Method in class ome.util.SqlAction.Impl
clearPixels() - Method in class ome.model.core.Image: clears the set.
clearPixelsLinks() - Method in class ome.model.core.OriginalFile: clears the set.
clearPlaneInfo() - Method in class ome.model.core.Pixels: clears the set.
clearPlateAcquisitions() - Method in class ome.model.screen.Plate: clears the set.
clearPlateLinks() - Method in class ome.model.screen.Screen: clears the set.
clearProjections() - Method in class ome.model.display.RenderingDef: clears the set.
clearProjectLinks() - Method in class ome.model.containers.Dataset: clears the set.
clearReagentLinks() - Method in class ome.model.screen.Well: clears the set.
clearReagents() - Method in class ome.model.screen.Screen: clears the set.
clearRoiLinks() - Method in class ome.model.containers.Folder: clears the set.
clearRois() - Method in class ome.model.core.Image: clears the set.
clearScreenLinks() - Method in class ome.model.screen.Plate: clears the set.
clearSessions() - Method in class ome.model.meta.Node: clears the set.
clearSettings() - Method in class ome.model.core.Pixels: clears the set.
clearShapes() - Method in class ome.model.roi.Roi: clears the set.
clearSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding: clears the set.
clearThumbnails() - Method in class ome.model.core.Pixels: clears the set.
clearUsedFiles() - Method in class ome.model.fs.Fileset: clears the set.
clearWaveRendering() - Method in class ome.model.display.RenderingDef: clears the set.
clearWellLinks() - Method in class ome.model.screen.Reagent: clears the set.
clearWells() - Method in class ome.model.screen.Plate: clears the set.
clearWellSample() - Method in class ome.model.screen.PlateAcquisition: clears the set.
clearWellSamples() - Method in class ome.model.core.Image: clears the set.
clearWellSamples() - Method in class ome.model.screen.Well: clears the set.
clientPath - Variable in class ome.model.fs.FilesetEntry
CLIENTPATH - Static variable in class ome.model.fs.FilesetEntry
close() - Method in class ome.services.fulltext.ConfiguredAnalyzer
closed - Variable in class ome.model.meta.Session
CLOSED - Static variable in class ome.model.meta.Session
closeNode(String) - Method in interface ome.util.SqlAction
closeNode(String) - Method in class ome.util.SqlAction.Impl
closeNodeSessions(String) - Method in interface ome.util.SqlAction
closeNodeSessions(String) - Method in class ome.util.SqlAction.Impl
closeQuietly(Closeable) - Static method in class ome.util.Utils
closeSessions(String) - Method in class ome.util.actions.PostgresSqlAction
closeSessions(String) - Method in interface ome.util.SqlAction
co2percent - Variable in class ome.model.acquisition.ImagingEnvironment
CO2PERCENT - Static variable in class ome.model.acquisition.ImagingEnvironment
CodomainMapContext - Class in ome.model.display: These filter definitions are used by the security system to eliminate non-readable objects from queries.
CodomainMapContext() - Constructor for class ome.model.display.CodomainMapContext
CodomainMapContext(Long) - Constructor for class ome.model.display.CodomainMapContext
CodomainMapContext(Long, boolean) - Constructor for class ome.model.display.CodomainMapContext: Main constructor.
CodomainMapContext(ChannelBinding) - Constructor for class ome.model.display.CodomainMapContext
CodomainMapContext.Details - Class in ome.model.display
coefficient - Variable in class ome.model.display.ChannelBinding
COEFFICIENT - Static variable in class ome.model.display.ChannelBinding
COLLAB_READLINK - Static variable in class ome.model.internal.Permissions: an immutable Permissions instance with read and write permissions for group members.
COLLAB_READONLY - Static variable in class ome.model.internal.Permissions: an immutable Permissions instance with permissions for group members to read other members' data.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Detector: takes a CBlock and calls the block once for each ome.model.annotations.DetectorAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Dichroic: takes a CBlock and calls the block once for each ome.model.annotations.DichroicAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Filter: takes a CBlock and calls the block once for each ome.model.annotations.FilterAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Instrument: takes a CBlock and calls the block once for each ome.model.annotations.InstrumentAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.LightPath: takes a CBlock and calls the block once for each ome.model.annotations.LightPathAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.LightSource: takes a CBlock and calls the block once for each ome.model.annotations.LightSourceAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Objective: takes a CBlock and calls the block once for each ome.model.annotations.ObjectiveAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.annotations.Annotation: takes a CBlock and calls the block once for each ome.model.annotations.AnnotationAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Dataset: takes a CBlock and calls the block once for each ome.model.annotations.DatasetAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Folder: takes a CBlock and calls the block once for each ome.model.annotations.FolderAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Project: takes a CBlock and calls the block once for each ome.model.annotations.ProjectAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.Channel: takes a CBlock and calls the block once for each ome.model.annotations.ChannelAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.Image: takes a CBlock and calls the block once for each ome.model.annotations.ImageAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.OriginalFile: takes a CBlock and calls the block once for each ome.model.annotations.OriginalFileAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.PlaneInfo: takes a CBlock and calls the block once for each ome.model.annotations.PlaneInfoAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.fs.Fileset: takes a CBlock and calls the block once for each ome.model.annotations.FilesetAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in interface ome.model.IAnnotated
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Experimenter: takes a CBlock and calls the block once for each ome.model.annotations.ExperimenterAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup: takes a CBlock and calls the block once for each ome.model.annotations.ExperimenterGroupAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Namespace: takes a CBlock and calls the block once for each ome.model.annotations.NamespaceAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Node: takes a CBlock and calls the block once for each ome.model.annotations.NodeAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Session: takes a CBlock and calls the block once for each ome.model.annotations.SessionAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.roi.Roi: takes a CBlock and calls the block once for each ome.model.annotations.RoiAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.roi.Shape: takes a CBlock and calls the block once for each ome.model.annotations.ShapeAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Plate: takes a CBlock and calls the block once for each ome.model.annotations.PlateAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition: takes a CBlock and calls the block once for each ome.model.annotations.PlateAcquisitionAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Reagent: takes a CBlock and calls the block once for each ome.model.annotations.ReagentAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Screen: takes a CBlock and calls the block once for each ome.model.annotations.ScreenAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Well: takes a CBlock and calls the block once for each ome.model.annotations.WellAnnotationLink while collecting the results.
collectChannels(CBlock<E>) - Method in class ome.model.core.LogicalChannel: takes a CBlock and calls the block once for each ome.model.core.Channel while collecting the results.
collectChannels(CBlock<E>) - Method in class ome.model.core.Pixels: takes a CBlock and calls the block once for each ome.model.core.Channel while collecting the results.
collectChildFolders(CBlock<E>) - Method in class ome.model.containers.Folder: takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.
collectDatasetLinks(CBlock<E>) - Method in class ome.model.containers.Project: takes a CBlock and calls the block once for each ome.model.containers.ProjectDatasetLink while collecting the results.
collectDatasetLinks(CBlock<E>) - Method in class ome.model.core.Image: takes a CBlock and calls the block once for each ome.model.containers.DatasetImageLink while collecting the results.
collectDetector(CBlock<E>) - Method in class ome.model.acquisition.Instrument: takes a CBlock and calls the block once for each ome.model.acquisition.Detector while collecting the results.
collectDichroic(CBlock<E>) - Method in class ome.model.acquisition.Instrument: takes a CBlock and calls the block once for each ome.model.acquisition.Dichroic while collecting the results.
CollectedACLViolations - Exception in ome.conditions.acl: User has attempted an action which is not permitted by the Permissions of a given instance.
CollectedACLViolations(String) - Constructor for exception ome.conditions.acl.CollectedACLViolations
collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.Filter: takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetEmissionFilterLink while collecting the results.
collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.FilterSet: takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetEmissionFilterLink while collecting the results.
collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.LightPath: takes a CBlock and calls the block once for each ome.model.acquisition.LightPathEmissionFilterLink while collecting the results.
collectEvents(CBlock<E>) - Method in class ome.model.meta.Session: takes a CBlock and calls the block once for each ome.model.meta.Event while collecting the results.
collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.Filter: takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetExcitationFilterLink while collecting the results.
collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.FilterSet: takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetExcitationFilterLink while collecting the results.
collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.LightPath: takes a CBlock and calls the block once for each ome.model.acquisition.LightPathExcitationFilterLink while collecting the results.
collectFilesetEntries(CBlock<E>) - Method in class ome.model.core.OriginalFile: takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while collecting the results.
collectFilter(CBlock<E>) - Method in class ome.model.acquisition.Instrument: takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
collectFilterSet(CBlock<E>) - Method in class ome.model.acquisition.Instrument: takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.
collectFolderLinks(CBlock<E>) - Method in class ome.model.core.Image: takes a CBlock and calls the block once for each ome.model.containers.FolderImageLink while collecting the results.
collectFolderLinks(CBlock<E>) - Method in class ome.model.roi.Roi: takes a CBlock and calls the block once for each ome.model.containers.FolderRoiLink while collecting the results.
collectGroupExperimenterMap(CBlock<E>) - Method in class ome.model.meta.Experimenter: takes a CBlock and calls the block once for each ome.model.meta.GroupExperimenterMap while collecting the results.
collectGroupExperimenterMap(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup: takes a CBlock and calls the block once for each ome.model.meta.GroupExperimenterMap while collecting the results.
collectImageLinks(CBlock<E>) - Method in class ome.model.containers.Dataset: takes a CBlock and calls the block once for each ome.model.containers.DatasetImageLink while collecting the results.
collectImageLinks(CBlock<E>) - Method in class ome.model.containers.Folder: takes a CBlock and calls the block once for each ome.model.containers.FolderImageLink while collecting the results.
collectImages(CBlock<E>) - Method in class ome.model.fs.Fileset: takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.
collectJobLinks(CBlock<E>) - Method in class ome.model.fs.Fileset: takes a CBlock and calls the block once for each ome.model.fs.FilesetJobLink while collecting the results.
collectLightSource(CBlock<E>) - Method in class ome.model.acquisition.Instrument: takes a CBlock and calls the block once for each ome.model.acquisition.LightSource while collecting the results.
collectLightSourceSettings(CBlock<E>) - Method in class ome.model.experiment.MicrobeamManipulation: takes a CBlock and calls the block once for each ome.model.acquisition.LightSettings while collecting the results.
collectLogs(CBlock<E>) - Method in class ome.model.meta.Event: takes a CBlock and calls the block once for each ome.model.meta.EventLog while collecting the results.
collectMicrobeamManipulation(CBlock<E>) - Method in class ome.model.experiment.Experiment: takes a CBlock and calls the block once for each ome.model.experiment.MicrobeamManipulation while collecting the results.
collectObjective(CBlock<E>) - Method in class ome.model.acquisition.Instrument: takes a CBlock and calls the block once for each ome.model.acquisition.Objective while collecting the results.
collectOriginalFileLinks(CBlock<E>) - Method in class ome.model.jobs.Job: takes a CBlock and calls the block once for each ome.model.jobs.JobOriginalFileLink while collecting the results.
collectOtf(CBlock<E>) - Method in class ome.model.acquisition.Instrument: takes a CBlock and calls the block once for each ome.model.acquisition.OTF while collecting the results.
collectPixels(CBlock<E>) - Method in class ome.model.core.Image: takes a CBlock and calls the block once for each ome.model.core.Pixels while collecting the results.
collectPixelsFileMaps(CBlock<E>) - Method in class ome.model.core.OriginalFile: takes a CBlock and calls the block once for each ome.model.core.PixelsOriginalFileMap while collecting the results.
collectPixelsFileMaps(CBlock<E>) - Method in class ome.model.core.Pixels: takes a CBlock and calls the block once for each ome.model.core.PixelsOriginalFileMap while collecting the results.
collectPlaneInfo(CBlock<E>) - Method in class ome.model.core.Pixels: takes a CBlock and calls the block once for each ome.model.core.PlaneInfo while collecting the results.
collectPlateAcquisitions(CBlock<E>) - Method in class ome.model.screen.Plate: takes a CBlock and calls the block once for each ome.model.screen.PlateAcquisition while collecting the results.
collectPlateLinks(CBlock<E>) - Method in class ome.model.screen.Screen: takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results.
collectProjections(CBlock<E>) - Method in class ome.model.display.RenderingDef: takes a CBlock and calls the block once for each ome.model.display.ProjectionDef while collecting the results.
collectProjectLinks(CBlock<E>) - Method in class ome.model.containers.Dataset: takes a CBlock and calls the block once for each ome.model.containers.ProjectDatasetLink while collecting the results.
collectReagentLinks(CBlock<E>) - Method in class ome.model.screen.Well: takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while collecting the results.
collectReagents(CBlock<E>) - Method in class ome.model.screen.Screen: takes a CBlock and calls the block once for each ome.model.screen.Reagent while collecting the results.
collectRoiLinks(CBlock<E>) - Method in class ome.model.containers.Folder: takes a CBlock and calls the block once for each ome.model.containers.FolderRoiLink while collecting the results.
collectRois(CBlock<E>) - Method in class ome.model.core.Image: takes a CBlock and calls the block once for each ome.model.roi.Roi while collecting the results.
collectScreenLinks(CBlock<E>) - Method in class ome.model.screen.Plate: takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results.
collectSessions(CBlock<E>) - Method in class ome.model.meta.Node: takes a CBlock and calls the block once for each ome.model.meta.Session while collecting the results.
collectSettings(CBlock<E>) - Method in class ome.model.core.Pixels: takes a CBlock and calls the block once for each ome.model.display.RenderingDef while collecting the results.
collectShapes(CBlock<E>) - Method in class ome.model.roi.Roi: takes a CBlock and calls the block once for each ome.model.roi.Shape while collecting the results.
collectSpatialDomainEnhancement(CBlock<E>) - Method in class ome.model.display.ChannelBinding: takes a CBlock and calls the block once for each ome.model.display.CodomainMapContext while collecting the results.
collectThumbnails(CBlock<E>) - Method in class ome.model.core.Pixels: takes a CBlock and calls the block once for each ome.model.display.Thumbnail while collecting the results.
collectUsedFiles(CBlock<E>) - Method in class ome.model.fs.Fileset: takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while collecting the results.
collectWaveRendering(CBlock<E>) - Method in class ome.model.display.RenderingDef: takes a CBlock and calls the block once for each ome.model.display.ChannelBinding while collecting the results.
collectWellLinks(CBlock<E>) - Method in class ome.model.screen.Reagent: takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while collecting the results.
collectWells(CBlock<E>) - Method in class ome.model.screen.Plate: takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.
collectWellSample(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition: takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.
collectWellSamples(CBlock<E>) - Method in class ome.model.core.Image: takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.
collectWellSamples(CBlock<E>) - Method in class ome.model.screen.Well: takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.
column - Variable in class ome.model.screen.Well
COLUMN - Static variable in class ome.model.screen.Well
columnNamingConvention - Variable in class ome.model.screen.Plate
COLUMNNAMINGCONVENTION - Static variable in class ome.model.screen.Plate
columns - Variable in class ome.model.screen.Plate
COLUMNS - Static variable in class ome.model.screen.Plate
CommentAnnotation - Class in ome.model.annotations
CommentAnnotation() - Constructor for class ome.model.annotations.CommentAnnotation
CommentAnnotation(Long) - Constructor for class ome.model.annotations.CommentAnnotation
CommentAnnotation(Long, boolean) - Constructor for class ome.model.annotations.CommentAnnotation: Main constructor.
compression - Variable in class ome.model.display.RenderingDef
COMPRESSION - Static variable in class ome.model.display.RenderingDef
ConcurrencyException - Exception in ome.conditions: Error due to simultaneous access of some resource.
ConcurrencyException(String, long) - Constructor for exception ome.conditions.ConcurrencyException
config - Variable in class ome.model.meta.Experimenter
config - Variable in class ome.model.meta.ExperimenterGroup
CONFIG - Static variable in class ome.model.meta.Experimenter
CONFIG - Static variable in class ome.model.meta.ExperimenterGroup
CONFIG_KEY - Static variable in class ome.util.PixelData
configure(Type, Properties, Dialect) - Method in class ome.util.TableIdGenerator
ConfiguredAnalyzer - Class in ome.services.fulltext: A full-text search analyzer usable by the OMERO model.
ConfiguredAnalyzer() - Constructor for class ome.services.fulltext.ConfiguredAnalyzer: Construct an analyzer wrapping the same class as previously passed to ConfiguredAnalyzer(Class).
ConfiguredAnalyzer(Class<? extends Analyzer>) - Constructor for class ome.services.fulltext.ConfiguredAnalyzer: Construct an analyzer wrapping the given class.
configValue(String) - Method in interface ome.util.SqlAction
configValue(String) - Method in class ome.util.SqlAction.Impl
conn - Variable in class ome.model.meta.Node
CONN - Static variable in class ome.model.meta.Node
constant - Variable in class ome.model.display.PlaneSlicingContext
CONSTANT - Static variable in class ome.model.display.PlaneSlicingContext
containingEvent - Variable in class ome.model.meta.Event
CONTAININGEVENT - Static variable in class ome.model.meta.Event
contextAt(int) - Method in class ome.model.internal.Details
ContextFilter - Class in ome.util: modified (hierarchical) visitor pattern.
ContextFilter() - Constructor for class ome.util.ContextFilter
contexts - Variable in class ome.model.internal.Details
contrastMethod - Variable in class ome.model.core.LogicalChannel
ContrastMethod - Class in ome.model.enums
ContrastMethod() - Constructor for class ome.model.enums.ContrastMethod
ContrastMethod(Long) - Constructor for class ome.model.enums.ContrastMethod
ContrastMethod(Long, boolean) - Constructor for class ome.model.enums.ContrastMethod: Main constructor.
ContrastMethod(String) - Constructor for class ome.model.enums.ContrastMethod
CONTRASTMETHOD - Static variable in class ome.model.core.LogicalChannel
ContrastMethod.Details - Class in ome.model.enums
ContrastStretchingContext - Class in ome.model.display
ContrastStretchingContext() - Constructor for class ome.model.display.ContrastStretchingContext
ContrastStretchingContext(Integer, Integer, Integer, Integer) - Constructor for class ome.model.display.ContrastStretchingContext
ContrastStretchingContext(Long) - Constructor for class ome.model.display.ContrastStretchingContext
ContrastStretchingContext(Long, boolean) - Constructor for class ome.model.display.ContrastStretchingContext: Main constructor.
Conversion - Class in ome.model.units: Base-functor like object which can be used for preparing complex equations for converting from one unit to another.
Conversion(Conversion...) - Constructor for class ome.model.units.Conversion: Primary constructor for a Conversion object.
Conversion.Add - Class in ome.model.units: Sums all Conversion instances via BigDecimal.add(BigDecimal).
Conversion.Int - Class in ome.model.units: Simply is a representation of a possibly large integer.
Conversion.Mul - Class in ome.model.units: Multiplies all Conversion instances via BigDecimal.multiply(BigDecimal).
Conversion.Pow - Class in ome.model.units: Exponentiates two Conversion instances via BigDecimal.pow(int).
Conversion.Rat - Class in ome.model.units: Divides two Conversion instances via BigDecimal.divide(BigDecimal, MathContext).
Conversion.Sym - Class in ome.model.units: Simply represents the variable of the source unit so that Conversion.Sym.convert(double) just returns the value passed in.
conversions - Variable in class ome.model.units.Conversion: Conversions, if any, which are passed into the constructor of this instance.
convert(double) - Method in class ome.model.units.Conversion.Add
convert(double) - Method in class ome.model.units.Conversion: Primary operator for Conversion instances.
convert(double) - Method in class ome.model.units.Conversion.Int: Returns a BigDecimal representation of this int.
convert(double) - Method in class ome.model.units.Conversion.Mul
convert(double) - Method in class ome.model.units.Conversion.Pow
convert(double) - Method in class ome.model.units.Conversion.Rat
convert(double) - Method in class ome.model.units.Conversion.Sym
convertElectricPotential(ElectricPotential) - Static method in class ome.model.units.ElectricPotential: FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertElectricPotential(ElectricPotential, String) - Static method in class ome.model.units.ElectricPotential
convertElectricPotential(ElectricPotential, Unit<ElectricPotential>) - Static method in class ome.model.units.ElectricPotential
convertFrequency(Frequency) - Static method in class ome.model.units.Frequency: FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertFrequency(Frequency, String) - Static method in class ome.model.units.Frequency
convertFrequency(Frequency, Unit<Frequency>) - Static method in class ome.model.units.Frequency
convertLength(Length) - Static method in class ome.model.units.Length: FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertLength(Length, String) - Static method in class ome.model.units.Length
convertLength(Length, Unit<Length>) - Static method in class ome.model.units.Length
convertPower(Power) - Static method in class ome.model.units.Power: FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertPower(Power, String) - Static method in class ome.model.units.Power
convertPower(Power, Unit<Power>) - Static method in class ome.model.units.Power
convertPressure(Pressure) - Static method in class ome.model.units.Pressure: FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertPressure(Pressure, String) - Static method in class ome.model.units.Pressure
convertPressure(Pressure, Unit<Pressure>) - Static method in class ome.model.units.Pressure
convertTemperature(Temperature) - Static method in class ome.model.units.Temperature: FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertTemperature(Temperature, String) - Static method in class ome.model.units.Temperature
convertTemperature(Temperature, Unit<Temperature>) - Static method in class ome.model.units.Temperature
convertTime(Time) - Static method in class ome.model.units.Time: FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertTime(Time, String) - Static method in class ome.model.units.Time
convertTime(Time, Unit<Time>) - Static method in class ome.model.units.Time
copy() - Method in class ome.model.internal.Details
copy(Details) - Method in class ome.model.internal.Details: Method which takes all field values from the given Details instance and copies them into the current instance.
copy(T) - Method in class ome.util.ShallowCopy
copyExtendedRestrictions() - Method in class ome.model.internal.Permissions: Produce a copy of restrictions for use elsewhere.
copyObject(Filterable, ModelMapper) - Method in interface ome.model.ModelBased
copyRestrictions() - Method in class ome.model.internal.Permissions: Deprecated.
copyRestrictions(boolean[], String[]) - Method in class ome.model.internal.Permissions: Deprecated.
copyRestrictions(int, Set<String>) - Method in class ome.model.internal.Permissions: Copy restrictions based on the integer returned by BasicACLVoter.
copyRestrictions(String[]) - Method in class ome.model.internal.Permissions: Safely copy the source array.
copyWhereUnset(Details, Details) - Method in class ome.model.internal.Details: For any field of this which is null (and is NOT null on mask -- assuming mask is not null), copy the same value from copyFrom into this object.
correction - Variable in class ome.model.acquisition.Objective
Correction - Class in ome.model.enums
Correction() - Constructor for class ome.model.enums.Correction
Correction(Long) - Constructor for class ome.model.enums.Correction
Correction(Long, boolean) - Constructor for class ome.model.enums.Correction: Main constructor.
Correction(String) - Constructor for class ome.model.enums.Correction
CORRECTION - Static variable in class ome.model.acquisition.Objective
Correction.Details - Class in ome.model.enums
correctionCollar - Variable in class ome.model.acquisition.ObjectiveSettings
CORRECTIONCOLLAR - Static variable in class ome.model.acquisition.ObjectiveSettings
CountCollectionPersister - Class in ome.util: CollectionPersister which knows how to handle the count views generated by dsl/resources/ome/dsl/views.dm.
CountCollectionPersister(Collection, CollectionRegionAccessStrategy, Configuration, SessionFactoryImplementor) - Constructor for class ome.util.CountCollectionPersister
Counter - Class in ome.util: A simple integral counter that can be incremented.
Counter() - Constructor for class ome.util.Counter: Create a new counter starting at zero.
countFormat(String) - Method in class ome.util.actions.PostgresSqlAction
countFormat(String) - Method in interface ome.util.SqlAction
create() - Static method in class ome.model.internal.Details: Call Details.create(Object[]) with null.
create(Object[]) - Static method in class ome.model.internal.Details: Factory method which returns a Details implementation for passing in API calls, but cannot be stored within an IObject instance.
createBufferedImage(int[], int, int) - Static method in class ome.util.ImageUtil: Creates a buffered image from a rendering engine RGB buffer without data copying.
createIdsTempTable(Collection<Long>) - Method in interface ome.util.SqlAction: Creates a temporary table filled with the given ids and returns its name.
createIdsTempTable(Collection<Long>) - Method in class ome.util.SqlAction.Impl
createInsertTrigger(String, String, String) - Method in interface ome.util.SqlAction: Creates an insert trigger of the given name, for the given table, with the given procedure.
createInsertTrigger(String, String, String) - Method in class ome.util.SqlAction.Impl
createSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction
createSavepoint(String) - Method in interface ome.util.SqlAction
CREATIONEVENT - Static variable in class ome.model.internal.Details
ctime - Variable in class ome.model.core.OriginalFile
CTIME - Static variable in class ome.model.core.OriginalFile
currentContext() - Method in class ome.util.ContextFilter
currentPatch - Variable in class ome.model.meta.DBPatch
CURRENTPATCH - Static variable in class ome.model.meta.DBPatch
currentUserNames() - Method in class ome.util.actions.PostgresSqlAction
currentUserNames() - Method in interface ome.util.SqlAction
currentVersion - Variable in class ome.model.meta.DBPatch
CURRENTVERSION - Static variable in class ome.model.meta.DBPatch
currValue(String) - Method in class ome.util.actions.PostgresSqlAction
currValue(String) - Method in interface ome.util.SqlAction
cutIn - Variable in class ome.model.acquisition.TransmittanceRange
CUTIN - Static variable in class ome.model.acquisition.TransmittanceRange
cutInTolerance - Variable in class ome.model.acquisition.TransmittanceRange
CUTINTOLERANCE - Static variable in class ome.model.acquisition.TransmittanceRange
cutOut - Variable in class ome.model.acquisition.TransmittanceRange
CUTOUT - Static variable in class ome.model.acquisition.TransmittanceRange
cutOutTolerance - Variable in class ome.model.acquisition.TransmittanceRange
CUTOUTTOLERANCE - Static variable in class ome.model.acquisition.TransmittanceRange

D

d - Variable in class ome.model.roi.Path: Deprecated.
D - Static variable in class ome.model.roi.Path: Deprecated.
data - Variable in class ome.model.meta.Share
data - Variable in class ome.util.PixelData: The pixels data backing buffer.
DATA - Static variable in class ome.model.meta.Share
DatabaseBusyException - Exception in ome.conditions: No connections are currently available for the database.
DatabaseBusyException(String, long) - Constructor for exception ome.conditions.DatabaseBusyException
Dataset - Class in ome.model.containers: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Dataset() - Constructor for class ome.model.containers.Dataset
Dataset(Long) - Constructor for class ome.model.containers.Dataset
Dataset(Long, boolean) - Constructor for class ome.model.containers.Dataset: Main constructor.
Dataset(String) - Constructor for class ome.model.containers.Dataset
Dataset.Details - Class in ome.model.containers
DatasetAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
DatasetAnnotationLink() - Constructor for class ome.model.annotations.DatasetAnnotationLink
DatasetAnnotationLink(Long) - Constructor for class ome.model.annotations.DatasetAnnotationLink
DatasetAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DatasetAnnotationLink: Main constructor.
DatasetAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DatasetAnnotationLink
DatasetAnnotationLink.Details - Class in ome.model.annotations
DatasetImageLink - Class in ome.model.containers: These filter definitions are used by the security system to eliminate non-readable objects from queries.
DatasetImageLink() - Constructor for class ome.model.containers.DatasetImageLink
DatasetImageLink(Long) - Constructor for class ome.model.containers.DatasetImageLink
DatasetImageLink(Long, boolean) - Constructor for class ome.model.containers.DatasetImageLink: Main constructor.
DatasetImageLink(IObject, IObject) - Constructor for class ome.model.containers.DatasetImageLink
DatasetImageLink.Details - Class in ome.model.containers
datasetLinks - Variable in class ome.model.containers.Project
datasetLinks - Variable in class ome.model.core.Image
DATASETLINKS - Static variable in class ome.model.containers.Project
DATASETLINKS - Static variable in class ome.model.core.Image
DATASETLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Project
DATASETLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
DAY - ome.model.enums.UnitsTime
DBPatch - Class in ome.model.meta
DBPatch() - Constructor for class ome.model.meta.DBPatch
DBPatch(Long) - Constructor for class ome.model.meta.DBPatch
DBPatch(Long, boolean) - Constructor for class ome.model.meta.DBPatch: Main constructor.
DBPatch(String, Integer, String, Integer) - Constructor for class ome.model.meta.DBPatch
DBPatch.Details - Class in ome.model.meta
dbUuid() - Method in class ome.util.actions.PostgresSqlAction
dbUuid() - Method in interface ome.util.SqlAction
dbVersion() - Method in class ome.util.actions.PostgresSqlAction
dbVersion() - Method in interface ome.util.SqlAction
DECAHERTZ - ome.model.enums.UnitsFrequency
DECAMETER - ome.model.enums.UnitsLength
DECAPASCAL - ome.model.enums.UnitsPressure
DECASECOND - ome.model.enums.UnitsTime
DECAVOLT - ome.model.enums.UnitsElectricPotential
DECAWATT - ome.model.enums.UnitsPower
DECIBAR - ome.model.enums.UnitsPressure
DECIHERTZ - ome.model.enums.UnitsFrequency
DECIMETER - ome.model.enums.UnitsLength
DECIPASCAL - ome.model.enums.UnitsPressure
DECISECOND - ome.model.enums.UnitsTime
DECIVOLT - ome.model.enums.UnitsElectricPotential
DECIWATT - ome.model.enums.UnitsPower
deepCopy(Object) - Method in class ome.model.units.GenericEnumType
defaultEventType - Variable in class ome.model.meta.Session
DEFAULTEVENTTYPE - Static variable in class ome.model.meta.Session
defaultSample - Variable in class ome.model.screen.Plate
DEFAULTSAMPLE - Static variable in class ome.model.screen.Plate
defaultT - Variable in class ome.model.display.RenderingDef
DEFAULTT - Static variable in class ome.model.display.RenderingDef
defaultZ - Variable in class ome.model.display.RenderingDef
DEFAULTZ - Static variable in class ome.model.display.RenderingDef
deferConstraints() - Method in class ome.util.actions.PostgresSqlAction
deferConstraints() - Method in interface ome.util.SqlAction
delConfigValue(String) - Method in interface ome.util.SqlAction
delConfigValue(String) - Method in class ome.util.SqlAction.Impl
delCurrentEventLog(String) - Method in class ome.util.actions.PostgresSqlAction
delCurrentEventLog(String) - Method in interface ome.util.SqlAction
delCurrentEventLog(String) - Method in class ome.util.SqlAction.Impl
deleteCurrentAdminPrivileges() - Method in interface ome.util.SqlAction: Delete the current light administrator privileges for the current transaction.
deleteCurrentAdminPrivileges() - Method in class ome.util.SqlAction.Impl
DeleteLog() - Constructor for class ome.util.SqlAction.DeleteLog
deleteOldAdminPrivileges(Collection<Long>) - Method in interface ome.util.SqlAction: Delete the current light administrator privileges for the given transactions.
deleteOldAdminPrivileges(Collection<Long>) - Method in class ome.util.SqlAction.Impl
deleteRepoDeleteLogs(SqlAction.DeleteLog) - Method in interface ome.util.SqlAction: Delete all SqlAction.DeleteLog entries which match all of the non-null fields provided in the template.
deleteRepoDeleteLogs(SqlAction.DeleteLog) - Method in class ome.util.SqlAction.Impl
DELETERESTRICTION - Static variable in class ome.model.internal.Permissions
deleteRows(PersistentCollection, Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister
deltaT - Variable in class ome.model.core.PlaneInfo
DELTAT - Static variable in class ome.model.core.PlaneInfo
description - Variable in class ome.model.annotations.Annotation
description - Variable in class ome.model.containers.Dataset
description - Variable in class ome.model.containers.Folder
description - Variable in class ome.model.containers.Project
description - Variable in class ome.model.core.Image
description - Variable in class ome.model.experiment.Experiment
description - Variable in class ome.model.experiment.MicrobeamManipulation
description - Variable in class ome.model.jobs.ScriptJob
description - Variable in class ome.model.meta.ExperimenterGroup
description - Variable in class ome.model.meta.Namespace
description - Variable in class ome.model.roi.Roi
description - Variable in class ome.model.screen.Plate
description - Variable in class ome.model.screen.PlateAcquisition
description - Variable in class ome.model.screen.Reagent
description - Variable in class ome.model.screen.Screen
DESCRIPTION - Static variable in class ome.model.annotations.Annotation
DESCRIPTION - Static variable in class ome.model.containers.Dataset
DESCRIPTION - Static variable in class ome.model.containers.Folder
DESCRIPTION - Static variable in class ome.model.containers.Project
DESCRIPTION - Static variable in class ome.model.core.Image
DESCRIPTION - Static variable in class ome.model.experiment.Experiment
DESCRIPTION - Static variable in class ome.model.experiment.MicrobeamManipulation
DESCRIPTION - Static variable in class ome.model.jobs.ScriptJob
DESCRIPTION - Static variable in class ome.model.meta.ExperimenterGroup
DESCRIPTION - Static variable in class ome.model.meta.Namespace
DESCRIPTION - Static variable in class ome.model.roi.Roi
DESCRIPTION - Static variable in class ome.model.screen.Plate
DESCRIPTION - Static variable in class ome.model.screen.PlateAcquisition
DESCRIPTION - Static variable in class ome.model.screen.Reagent
DESCRIPTION - Static variable in class ome.model.screen.Screen
details - Variable in class ome.model.acquisition.Detector
details - Variable in class ome.model.acquisition.DetectorSettings
details - Variable in class ome.model.acquisition.Dichroic
details - Variable in class ome.model.acquisition.Filter
details - Variable in class ome.model.acquisition.FilterSet
details - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
details - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
details - Variable in class ome.model.acquisition.ImagingEnvironment
details - Variable in class ome.model.acquisition.Instrument
details - Variable in class ome.model.acquisition.LightPath
details - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
details - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
details - Variable in class ome.model.acquisition.LightSettings
details - Variable in class ome.model.acquisition.LightSource
details - Variable in class ome.model.acquisition.Microscope
details - Variable in class ome.model.acquisition.Objective
details - Variable in class ome.model.acquisition.ObjectiveSettings
details - Variable in class ome.model.acquisition.OTF
details - Variable in class ome.model.acquisition.StageLabel
details - Variable in class ome.model.acquisition.TransmittanceRange
details - Variable in class ome.model.annotations.Annotation
details - Variable in class ome.model.annotations.AnnotationAnnotationLink
details - Variable in class ome.model.annotations.ChannelAnnotationLink
details - Variable in class ome.model.annotations.DatasetAnnotationLink
details - Variable in class ome.model.annotations.DetectorAnnotationLink
details - Variable in class ome.model.annotations.DichroicAnnotationLink
details - Variable in class ome.model.annotations.ExperimenterAnnotationLink
details - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
details - Variable in class ome.model.annotations.FilesetAnnotationLink
details - Variable in class ome.model.annotations.FilterAnnotationLink
details - Variable in class ome.model.annotations.FolderAnnotationLink
details - Variable in class ome.model.annotations.ImageAnnotationLink
details - Variable in class ome.model.annotations.InstrumentAnnotationLink
details - Variable in class ome.model.annotations.LightPathAnnotationLink
details - Variable in class ome.model.annotations.LightSourceAnnotationLink
details - Variable in class ome.model.annotations.NamespaceAnnotationLink
details - Variable in class ome.model.annotations.NodeAnnotationLink
details - Variable in class ome.model.annotations.ObjectiveAnnotationLink
details - Variable in class ome.model.annotations.OriginalFileAnnotationLink
details - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
details - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
details - Variable in class ome.model.annotations.PlateAnnotationLink
details - Variable in class ome.model.annotations.ProjectAnnotationLink
details - Variable in class ome.model.annotations.ReagentAnnotationLink
details - Variable in class ome.model.annotations.RoiAnnotationLink
details - Variable in class ome.model.annotations.ScreenAnnotationLink
details - Variable in class ome.model.annotations.SessionAnnotationLink
details - Variable in class ome.model.annotations.ShapeAnnotationLink
details - Variable in class ome.model.annotations.WellAnnotationLink
details - Variable in class ome.model.containers.Dataset
details - Variable in class ome.model.containers.DatasetImageLink
details - Variable in class ome.model.containers.Folder
details - Variable in class ome.model.containers.FolderImageLink
details - Variable in class ome.model.containers.FolderRoiLink
details - Variable in class ome.model.containers.Project
details - Variable in class ome.model.containers.ProjectDatasetLink
details - Variable in class ome.model.core.Channel
details - Variable in class ome.model.core.Image
details - Variable in class ome.model.core.LogicalChannel
details - Variable in class ome.model.core.OriginalFile
details - Variable in class ome.model.core.Pixels
details - Variable in class ome.model.core.PixelsOriginalFileMap
details - Variable in class ome.model.core.PlaneInfo
details - Variable in class ome.model.display.ChannelBinding
details - Variable in class ome.model.display.CodomainMapContext
details - Variable in class ome.model.display.ProjectionDef
details - Variable in class ome.model.display.QuantumDef
details - Variable in class ome.model.display.RenderingDef
details - Variable in class ome.model.display.Thumbnail
details - Variable in class ome.model.enums.AcquisitionMode
details - Variable in class ome.model.enums.AdminPrivilege
details - Variable in class ome.model.enums.ArcType
details - Variable in class ome.model.enums.Binning
details - Variable in class ome.model.enums.ChecksumAlgorithm
details - Variable in class ome.model.enums.ContrastMethod
details - Variable in class ome.model.enums.Correction
details - Variable in class ome.model.enums.DetectorType
details - Variable in class ome.model.enums.DimensionOrder
details - Variable in class ome.model.enums.EventType
details - Variable in class ome.model.enums.ExperimentType
details - Variable in class ome.model.enums.Family
details - Variable in class ome.model.enums.FilamentType
details - Variable in class ome.model.enums.FilterType
details - Variable in class ome.model.enums.Format
details - Variable in class ome.model.enums.Illumination
details - Variable in class ome.model.enums.Immersion
details - Variable in class ome.model.enums.LaserMedium
details - Variable in class ome.model.enums.LaserType
details - Variable in class ome.model.enums.Medium
details - Variable in class ome.model.enums.MicrobeamManipulationType
details - Variable in class ome.model.enums.MicroscopeType
details - Variable in class ome.model.enums.PhotometricInterpretation
details - Variable in class ome.model.enums.PixelsType
details - Variable in class ome.model.enums.ProjectionAxis
details - Variable in class ome.model.enums.ProjectionType
details - Variable in class ome.model.enums.Pulse
details - Variable in class ome.model.enums.RenderingModel
details - Variable in class ome.model.experiment.Experiment
details - Variable in class ome.model.experiment.MicrobeamManipulation
details - Variable in class ome.model.fs.Fileset
details - Variable in class ome.model.fs.FilesetEntry
details - Variable in class ome.model.fs.FilesetJobLink
details - Variable in class ome.model.internal.Link
details - Variable in class ome.model.jobs.Job
details - Variable in class ome.model.jobs.JobOriginalFileLink
details - Variable in class ome.model.jobs.JobStatus
details - Variable in class ome.model.meta.DBPatch
details - Variable in class ome.model.meta.Event
details - Variable in class ome.model.meta.EventLog
details - Variable in class ome.model.meta.Experimenter
details - Variable in class ome.model.meta.ExperimenterGroup
details - Variable in class ome.model.meta.ExternalInfo
details - Variable in class ome.model.meta.GroupExperimenterMap
details - Variable in class ome.model.meta.Namespace
details - Variable in class ome.model.meta.Node
details - Variable in class ome.model.meta.Session
details - Variable in class ome.model.meta.ShareMember
details - Variable in class ome.model.roi.AffineTransform
details - Variable in class ome.model.roi.Roi
details - Variable in class ome.model.roi.Shape
details - Variable in class ome.model.screen.Plate
details - Variable in class ome.model.screen.PlateAcquisition
details - Variable in class ome.model.screen.Reagent
details - Variable in class ome.model.screen.Screen
details - Variable in class ome.model.screen.ScreenPlateLink
details - Variable in class ome.model.screen.Well
details - Variable in class ome.model.screen.WellReagentLink
details - Variable in class ome.model.screen.WellSample
details - Variable in class ome.model.stats.StatsInfo
Details - Class in ome.model.internal: value type for low-level (row-level) details for all IObject objects.
Details() - Constructor for class ome.model.acquisition.Detector.Details
Details() - Constructor for class ome.model.acquisition.DetectorSettings.Details
Details() - Constructor for class ome.model.acquisition.Dichroic.Details
Details() - Constructor for class ome.model.acquisition.Filter.Details
Details() - Constructor for class ome.model.acquisition.FilterSet.Details
Details() - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink.Details
Details() - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink.Details
Details() - Constructor for class ome.model.acquisition.ImagingEnvironment.Details
Details() - Constructor for class ome.model.acquisition.Instrument.Details
Details() - Constructor for class ome.model.acquisition.LightPath.Details
Details() - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink.Details
Details() - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink.Details
Details() - Constructor for class ome.model.acquisition.LightSettings.Details
Details() - Constructor for class ome.model.acquisition.LightSource.Details
Details() - Constructor for class ome.model.acquisition.Microscope.Details
Details() - Constructor for class ome.model.acquisition.Objective.Details
Details() - Constructor for class ome.model.acquisition.ObjectiveSettings.Details
Details() - Constructor for class ome.model.acquisition.OTF.Details
Details() - Constructor for class ome.model.acquisition.StageLabel.Details
Details() - Constructor for class ome.model.acquisition.TransmittanceRange.Details
Details() - Constructor for class ome.model.annotations.Annotation.Details
Details() - Constructor for class ome.model.annotations.AnnotationAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.ChannelAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.DatasetAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.DetectorAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.DichroicAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.ExperimenterAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.FilesetAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.FilterAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.FolderAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.ImageAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.InstrumentAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.LightPathAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.LightSourceAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.NamespaceAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.NodeAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.ObjectiveAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.OriginalFileAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.PlateAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.ProjectAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.ReagentAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.RoiAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.ScreenAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.SessionAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.ShapeAnnotationLink.Details
Details() - Constructor for class ome.model.annotations.WellAnnotationLink.Details
Details() - Constructor for class ome.model.containers.Dataset.Details
Details() - Constructor for class ome.model.containers.DatasetImageLink.Details
Details() - Constructor for class ome.model.containers.Folder.Details
Details() - Constructor for class ome.model.containers.FolderImageLink.Details
Details() - Constructor for class ome.model.containers.FolderRoiLink.Details
Details() - Constructor for class ome.model.containers.Project.Details
Details() - Constructor for class ome.model.containers.ProjectDatasetLink.Details
Details() - Constructor for class ome.model.core.Channel.Details
Details() - Constructor for class ome.model.core.Image.Details
Details() - Constructor for class ome.model.core.LogicalChannel.Details
Details() - Constructor for class ome.model.core.OriginalFile.Details
Details() - Constructor for class ome.model.core.Pixels.Details
Details() - Constructor for class ome.model.core.PixelsOriginalFileMap.Details
Details() - Constructor for class ome.model.core.PlaneInfo.Details
Details() - Constructor for class ome.model.display.ChannelBinding.Details
Details() - Constructor for class ome.model.display.CodomainMapContext.Details
Details() - Constructor for class ome.model.display.ProjectionDef.Details
Details() - Constructor for class ome.model.display.QuantumDef.Details
Details() - Constructor for class ome.model.display.RenderingDef.Details
Details() - Constructor for class ome.model.display.Thumbnail.Details
Details() - Constructor for class ome.model.enums.AcquisitionMode.Details
Details() - Constructor for class ome.model.enums.AdminPrivilege.Details
Details() - Constructor for class ome.model.enums.ArcType.Details
Details() - Constructor for class ome.model.enums.Binning.Details
Details() - Constructor for class ome.model.enums.ChecksumAlgorithm.Details
Details() - Constructor for class ome.model.enums.ContrastMethod.Details
Details() - Constructor for class ome.model.enums.Correction.Details
Details() - Constructor for class ome.model.enums.DetectorType.Details
Details() - Constructor for class ome.model.enums.DimensionOrder.Details
Details() - Constructor for class ome.model.enums.EventType.Details
Details() - Constructor for class ome.model.enums.ExperimentType.Details
Details() - Constructor for class ome.model.enums.Family.Details
Details() - Constructor for class ome.model.enums.FilamentType.Details
Details() - Constructor for class ome.model.enums.FilterType.Details
Details() - Constructor for class ome.model.enums.Format.Details
Details() - Constructor for class ome.model.enums.Illumination.Details
Details() - Constructor for class ome.model.enums.Immersion.Details
Details() - Constructor for class ome.model.enums.LaserMedium.Details
Details() - Constructor for class ome.model.enums.LaserType.Details
Details() - Constructor for class ome.model.enums.Medium.Details
Details() - Constructor for class ome.model.enums.MicrobeamManipulationType.Details
Details() - Constructor for class ome.model.enums.MicroscopeType.Details
Details() - Constructor for class ome.model.enums.PhotometricInterpretation.Details
Details() - Constructor for class ome.model.enums.PixelsType.Details
Details() - Constructor for class ome.model.enums.ProjectionAxis.Details
Details() - Constructor for class ome.model.enums.ProjectionType.Details
Details() - Constructor for class ome.model.enums.Pulse.Details
Details() - Constructor for class ome.model.enums.RenderingModel.Details
Details() - Constructor for class ome.model.experiment.Experiment.Details
Details() - Constructor for class ome.model.experiment.MicrobeamManipulation.Details
Details() - Constructor for class ome.model.fs.Fileset.Details
Details() - Constructor for class ome.model.fs.FilesetEntry.Details
Details() - Constructor for class ome.model.fs.FilesetJobLink.Details
Details() - Constructor for class ome.model.internal.Details: default constructor.
Details() - Constructor for class ome.model.internal.Link.Details
Details() - Constructor for class ome.model.jobs.Job.Details
Details() - Constructor for class ome.model.jobs.JobOriginalFileLink.Details
Details() - Constructor for class ome.model.jobs.JobStatus.Details
Details() - Constructor for class ome.model.meta.DBPatch.Details
Details() - Constructor for class ome.model.meta.Event.Details
Details() - Constructor for class ome.model.meta.EventLog.Details
Details() - Constructor for class ome.model.meta.Experimenter.Details
Details() - Constructor for class ome.model.meta.ExperimenterGroup.Details
Details() - Constructor for class ome.model.meta.ExternalInfo.Details
Details() - Constructor for class ome.model.meta.GroupExperimenterMap.Details
Details() - Constructor for class ome.model.meta.Namespace.Details
Details() - Constructor for class ome.model.meta.Node.Details
Details() - Constructor for class ome.model.meta.Session.Details
Details() - Constructor for class ome.model.meta.ShareMember.Details
Details() - Constructor for class ome.model.roi.AffineTransform.Details
Details() - Constructor for class ome.model.roi.Roi.Details
Details() - Constructor for class ome.model.roi.Shape.Details
Details() - Constructor for class ome.model.screen.Plate.Details
Details() - Constructor for class ome.model.screen.PlateAcquisition.Details
Details() - Constructor for class ome.model.screen.Reagent.Details
Details() - Constructor for class ome.model.screen.Screen.Details
Details() - Constructor for class ome.model.screen.ScreenPlateLink.Details
Details() - Constructor for class ome.model.screen.Well.Details
Details() - Constructor for class ome.model.screen.WellReagentLink.Details
Details() - Constructor for class ome.model.screen.WellSample.Details
Details() - Constructor for class ome.model.stats.StatsInfo.Details
Details(Object[]) - Constructor for class ome.model.acquisition.Detector.Details
Details(Object[]) - Constructor for class ome.model.acquisition.DetectorSettings.Details
Details(Object[]) - Constructor for class ome.model.acquisition.Dichroic.Details
Details(Object[]) - Constructor for class ome.model.acquisition.Filter.Details
Details(Object[]) - Constructor for class ome.model.acquisition.FilterSet.Details
Details(Object[]) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink.Details
Details(Object[]) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink.Details
Details(Object[]) - Constructor for class ome.model.acquisition.ImagingEnvironment.Details
Details(Object[]) - Constructor for class ome.model.acquisition.Instrument.Details
Details(Object[]) - Constructor for class ome.model.acquisition.LightPath.Details
Details(Object[]) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink.Details
Details(Object[]) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink.Details
Details(Object[]) - Constructor for class ome.model.acquisition.LightSettings.Details
Details(Object[]) - Constructor for class ome.model.acquisition.LightSource.Details
Details(Object[]) - Constructor for class ome.model.acquisition.Microscope.Details
Details(Object[]) - Constructor for class ome.model.acquisition.Objective.Details
Details(Object[]) - Constructor for class ome.model.acquisition.ObjectiveSettings.Details
Details(Object[]) - Constructor for class ome.model.acquisition.OTF.Details
Details(Object[]) - Constructor for class ome.model.acquisition.StageLabel.Details
Details(Object[]) - Constructor for class ome.model.acquisition.TransmittanceRange.Details
Details(Object[]) - Constructor for class ome.model.annotations.Annotation.Details
Details(Object[]) - Constructor for class ome.model.annotations.AnnotationAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.ChannelAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.DatasetAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.DetectorAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.DichroicAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.FilesetAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.FilterAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.FolderAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.ImageAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.InstrumentAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.LightPathAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.LightSourceAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.NamespaceAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.NodeAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.PlateAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.ProjectAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.ReagentAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.RoiAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.ScreenAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.SessionAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.ShapeAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.annotations.WellAnnotationLink.Details
Details(Object[]) - Constructor for class ome.model.containers.Dataset.Details
Details(Object[]) - Constructor for class ome.model.containers.DatasetImageLink.Details
Details(Object[]) - Constructor for class ome.model.containers.Folder.Details
Details(Object[]) - Constructor for class ome.model.containers.FolderImageLink.Details
Details(Object[]) - Constructor for class ome.model.containers.FolderRoiLink.Details
Details(Object[]) - Constructor for class ome.model.containers.Project.Details
Details(Object[]) - Constructor for class ome.model.containers.ProjectDatasetLink.Details
Details(Object[]) - Constructor for class ome.model.core.Channel.Details
Details(Object[]) - Constructor for class ome.model.core.Image.Details
Details(Object[]) - Constructor for class ome.model.core.LogicalChannel.Details
Details(Object[]) - Constructor for class ome.model.core.OriginalFile.Details
Details(Object[]) - Constructor for class ome.model.core.Pixels.Details
Details(Object[]) - Constructor for class ome.model.core.PixelsOriginalFileMap.Details
Details(Object[]) - Constructor for class ome.model.core.PlaneInfo.Details
Details(Object[]) - Constructor for class ome.model.display.ChannelBinding.Details
Details(Object[]) - Constructor for class ome.model.display.CodomainMapContext.Details
Details(Object[]) - Constructor for class ome.model.display.ProjectionDef.Details
Details(Object[]) - Constructor for class ome.model.display.QuantumDef.Details
Details(Object[]) - Constructor for class ome.model.display.RenderingDef.Details
Details(Object[]) - Constructor for class ome.model.display.Thumbnail.Details
Details(Object[]) - Constructor for class ome.model.enums.AcquisitionMode.Details
Details(Object[]) - Constructor for class ome.model.enums.AdminPrivilege.Details
Details(Object[]) - Constructor for class ome.model.enums.ArcType.Details
Details(Object[]) - Constructor for class ome.model.enums.Binning.Details
Details(Object[]) - Constructor for class ome.model.enums.ChecksumAlgorithm.Details
Details(Object[]) - Constructor for class ome.model.enums.ContrastMethod.Details
Details(Object[]) - Constructor for class ome.model.enums.Correction.Details
Details(Object[]) - Constructor for class ome.model.enums.DetectorType.Details
Details(Object[]) - Constructor for class ome.model.enums.DimensionOrder.Details
Details(Object[]) - Constructor for class ome.model.enums.EventType.Details
Details(Object[]) - Constructor for class ome.model.enums.ExperimentType.Details
Details(Object[]) - Constructor for class ome.model.enums.Family.Details
Details(Object[]) - Constructor for class ome.model.enums.FilamentType.Details
Details(Object[]) - Constructor for class ome.model.enums.FilterType.Details
Details(Object[]) - Constructor for class ome.model.enums.Format.Details
Details(Object[]) - Constructor for class ome.model.enums.Illumination.Details
Details(Object[]) - Constructor for class ome.model.enums.Immersion.Details
Details(Object[]) - Constructor for class ome.model.enums.LaserMedium.Details
Details(Object[]) - Constructor for class ome.model.enums.LaserType.Details
Details(Object[]) - Constructor for class ome.model.enums.Medium.Details
Details(Object[]) - Constructor for class ome.model.enums.MicrobeamManipulationType.Details
Details(Object[]) - Constructor for class ome.model.enums.MicroscopeType.Details
Details(Object[]) - Constructor for class ome.model.enums.PhotometricInterpretation.Details
Details(Object[]) - Constructor for class ome.model.enums.PixelsType.Details
Details(Object[]) - Constructor for class ome.model.enums.ProjectionAxis.Details
Details(Object[]) - Constructor for class ome.model.enums.ProjectionType.Details
Details(Object[]) - Constructor for class ome.model.enums.Pulse.Details
Details(Object[]) - Constructor for class ome.model.enums.RenderingModel.Details
Details(Object[]) - Constructor for class ome.model.experiment.Experiment.Details
Details(Object[]) - Constructor for class ome.model.experiment.MicrobeamManipulation.Details
Details(Object[]) - Constructor for class ome.model.fs.Fileset.Details
Details(Object[]) - Constructor for class ome.model.fs.FilesetEntry.Details
Details(Object[]) - Constructor for class ome.model.fs.FilesetJobLink.Details
Details(Object[]) - Constructor for class ome.model.internal.Details
Details(Object[]) - Constructor for class ome.model.internal.Link.Details
Details(Object[]) - Constructor for class ome.model.jobs.Job.Details
Details(Object[]) - Constructor for class ome.model.jobs.JobOriginalFileLink.Details
Details(Object[]) - Constructor for class ome.model.jobs.JobStatus.Details
Details(Object[]) - Constructor for class ome.model.meta.DBPatch.Details
Details(Object[]) - Constructor for class ome.model.meta.Event.Details
Details(Object[]) - Constructor for class ome.model.meta.EventLog.Details
Details(Object[]) - Constructor for class ome.model.meta.Experimenter.Details
Details(Object[]) - Constructor for class ome.model.meta.ExperimenterGroup.Details
Details(Object[]) - Constructor for class ome.model.meta.ExternalInfo.Details
Details(Object[]) - Constructor for class ome.model.meta.GroupExperimenterMap.Details
Details(Object[]) - Constructor for class ome.model.meta.Namespace.Details
Details(Object[]) - Constructor for class ome.model.meta.Node.Details
Details(Object[]) - Constructor for class ome.model.meta.Session.Details
Details(Object[]) - Constructor for class ome.model.meta.ShareMember.Details
Details(Object[]) - Constructor for class ome.model.roi.AffineTransform.Details
Details(Object[]) - Constructor for class ome.model.roi.Roi.Details
Details(Object[]) - Constructor for class ome.model.roi.Shape.Details
Details(Object[]) - Constructor for class ome.model.screen.Plate.Details
Details(Object[]) - Constructor for class ome.model.screen.PlateAcquisition.Details
Details(Object[]) - Constructor for class ome.model.screen.Reagent.Details
Details(Object[]) - Constructor for class ome.model.screen.Screen.Details
Details(Object[]) - Constructor for class ome.model.screen.ScreenPlateLink.Details
Details(Object[]) - Constructor for class ome.model.screen.Well.Details
Details(Object[]) - Constructor for class ome.model.screen.WellReagentLink.Details
Details(Object[]) - Constructor for class ome.model.screen.WellSample.Details
Details(Object[]) - Constructor for class ome.model.stats.StatsInfo.Details
Details(Details) - Constructor for class ome.model.internal.Details: copy-constructor
DETAILS - Static variable in class ome.model.acquisition.Detector
DETAILS - Static variable in class ome.model.acquisition.DetectorSettings
DETAILS - Static variable in class ome.model.acquisition.Dichroic
DETAILS - Static variable in class ome.model.acquisition.Filter
DETAILS - Static variable in class ome.model.acquisition.FilterSet
DETAILS - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
DETAILS - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
DETAILS - Static variable in class ome.model.acquisition.ImagingEnvironment
DETAILS - Static variable in class ome.model.acquisition.Instrument
DETAILS - Static variable in class ome.model.acquisition.LightPath
DETAILS - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
DETAILS - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
DETAILS - Static variable in class ome.model.acquisition.LightSettings
DETAILS - Static variable in class ome.model.acquisition.LightSource
DETAILS - Static variable in class ome.model.acquisition.Microscope
DETAILS - Static variable in class ome.model.acquisition.Objective
DETAILS - Static variable in class ome.model.acquisition.ObjectiveSettings
DETAILS - Static variable in class ome.model.acquisition.OTF
DETAILS - Static variable in class ome.model.acquisition.StageLabel
DETAILS - Static variable in class ome.model.acquisition.TransmittanceRange
DETAILS - Static variable in class ome.model.annotations.Annotation
DETAILS - Static variable in class ome.model.annotations.AnnotationAnnotationLink
DETAILS - Static variable in class ome.model.annotations.ChannelAnnotationLink
DETAILS - Static variable in class ome.model.annotations.DatasetAnnotationLink
DETAILS - Static variable in class ome.model.annotations.DetectorAnnotationLink
DETAILS - Static variable in class ome.model.annotations.DichroicAnnotationLink
DETAILS - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
DETAILS - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
DETAILS - Static variable in class ome.model.annotations.FilesetAnnotationLink
DETAILS - Static variable in class ome.model.annotations.FilterAnnotationLink
DETAILS - Static variable in class ome.model.annotations.FolderAnnotationLink
DETAILS - Static variable in class ome.model.annotations.ImageAnnotationLink
DETAILS - Static variable in class ome.model.annotations.InstrumentAnnotationLink
DETAILS - Static variable in class ome.model.annotations.LightPathAnnotationLink
DETAILS - Static variable in class ome.model.annotations.LightSourceAnnotationLink
DETAILS - Static variable in class ome.model.annotations.NamespaceAnnotationLink
DETAILS - Static variable in class ome.model.annotations.NodeAnnotationLink
DETAILS - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
DETAILS - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
DETAILS - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
DETAILS - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
DETAILS - Static variable in class ome.model.annotations.PlateAnnotationLink
DETAILS - Static variable in class ome.model.annotations.ProjectAnnotationLink
DETAILS - Static variable in class ome.model.annotations.ReagentAnnotationLink
DETAILS - Static variable in class ome.model.annotations.RoiAnnotationLink
DETAILS - Static variable in class ome.model.annotations.ScreenAnnotationLink
DETAILS - Static variable in class ome.model.annotations.SessionAnnotationLink
DETAILS - Static variable in class ome.model.annotations.ShapeAnnotationLink
DETAILS - Static variable in class ome.model.annotations.WellAnnotationLink
DETAILS - Static variable in class ome.model.containers.Dataset
DETAILS - Static variable in class ome.model.containers.DatasetImageLink
DETAILS - Static variable in class ome.model.containers.Folder
DETAILS - Static variable in class ome.model.containers.FolderImageLink
DETAILS - Static variable in class ome.model.containers.FolderRoiLink
DETAILS - Static variable in class ome.model.containers.Project
DETAILS - Static variable in class ome.model.containers.ProjectDatasetLink
DETAILS - Static variable in class ome.model.core.Channel
DETAILS - Static variable in class ome.model.core.Image
DETAILS - Static variable in class ome.model.core.LogicalChannel
DETAILS - Static variable in class ome.model.core.OriginalFile
DETAILS - Static variable in class ome.model.core.Pixels
DETAILS - Static variable in class ome.model.core.PixelsOriginalFileMap
DETAILS - Static variable in class ome.model.core.PlaneInfo
DETAILS - Static variable in class ome.model.display.ChannelBinding
DETAILS - Static variable in class ome.model.display.CodomainMapContext
DETAILS - Static variable in class ome.model.display.ProjectionDef
DETAILS - Static variable in class ome.model.display.QuantumDef
DETAILS - Static variable in class ome.model.display.RenderingDef
DETAILS - Static variable in class ome.model.display.Thumbnail
DETAILS - Static variable in class ome.model.enums.AcquisitionMode
DETAILS - Static variable in class ome.model.enums.AdminPrivilege
DETAILS - Static variable in class ome.model.enums.ArcType
DETAILS - Static variable in class ome.model.enums.Binning
DETAILS - Static variable in class ome.model.enums.ChecksumAlgorithm
DETAILS - Static variable in class ome.model.enums.ContrastMethod
DETAILS - Static variable in class ome.model.enums.Correction
DETAILS - Static variable in class ome.model.enums.DetectorType
DETAILS - Static variable in class ome.model.enums.DimensionOrder
DETAILS - Static variable in class ome.model.enums.EventType
DETAILS - Static variable in class ome.model.enums.ExperimentType
DETAILS - Static variable in class ome.model.enums.Family
DETAILS - Static variable in class ome.model.enums.FilamentType
DETAILS - Static variable in class ome.model.enums.FilterType
DETAILS - Static variable in class ome.model.enums.Format
DETAILS - Static variable in class ome.model.enums.Illumination
DETAILS - Static variable in class ome.model.enums.Immersion
DETAILS - Static variable in class ome.model.enums.LaserMedium
DETAILS - Static variable in class ome.model.enums.LaserType
DETAILS - Static variable in class ome.model.enums.Medium
DETAILS - Static variable in class ome.model.enums.MicrobeamManipulationType
DETAILS - Static variable in class ome.model.enums.MicroscopeType
DETAILS - Static variable in class ome.model.enums.PhotometricInterpretation
DETAILS - Static variable in class ome.model.enums.PixelsType
DETAILS - Static variable in class ome.model.enums.ProjectionAxis
DETAILS - Static variable in class ome.model.enums.ProjectionType
DETAILS - Static variable in class ome.model.enums.Pulse
DETAILS - Static variable in class ome.model.enums.RenderingModel
DETAILS - Static variable in class ome.model.experiment.Experiment
DETAILS - Static variable in class ome.model.experiment.MicrobeamManipulation
DETAILS - Static variable in class ome.model.fs.Fileset
DETAILS - Static variable in class ome.model.fs.FilesetEntry
DETAILS - Static variable in class ome.model.fs.FilesetJobLink
DETAILS - Static variable in class ome.model.internal.Link
DETAILS - Static variable in class ome.model.jobs.Job
DETAILS - Static variable in class ome.model.jobs.JobOriginalFileLink
DETAILS - Static variable in class ome.model.jobs.JobStatus
DETAILS - Static variable in class ome.model.meta.DBPatch
DETAILS - Static variable in class ome.model.meta.Event
DETAILS - Static variable in class ome.model.meta.EventLog
DETAILS - Static variable in class ome.model.meta.Experimenter
DETAILS - Static variable in class ome.model.meta.ExperimenterGroup
DETAILS - Static variable in class ome.model.meta.ExternalInfo
DETAILS - Static variable in class ome.model.meta.GroupExperimenterMap
DETAILS - Static variable in class ome.model.meta.Namespace
DETAILS - Static variable in class ome.model.meta.Node
DETAILS - Static variable in class ome.model.meta.Session
DETAILS - Static variable in class ome.model.meta.ShareMember
DETAILS - Static variable in class ome.model.roi.AffineTransform
DETAILS - Static variable in class ome.model.roi.Roi
DETAILS - Static variable in class ome.model.roi.Shape
DETAILS - Static variable in class ome.model.screen.Plate
DETAILS - Static variable in class ome.model.screen.PlateAcquisition
DETAILS - Static variable in class ome.model.screen.Reagent
DETAILS - Static variable in class ome.model.screen.Screen
DETAILS - Static variable in class ome.model.screen.ScreenPlateLink
DETAILS - Static variable in class ome.model.screen.Well
DETAILS - Static variable in class ome.model.screen.WellReagentLink
DETAILS - Static variable in class ome.model.screen.WellSample
DETAILS - Static variable in class ome.model.stats.StatsInfo
DetailsFieldBridge - Class in ome.util: Delegating FieldBridge which passes the "fieldBridge" bean from the "ome.model" Spring ApplicationContext all arguments.
DetailsFieldBridge() - Constructor for class ome.util.DetailsFieldBridge
detector - Variable in class ome.model.acquisition.DetectorSettings
detector - Variable in class ome.model.acquisition.Instrument
Detector - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Detector() - Constructor for class ome.model.acquisition.Detector
Detector(Long) - Constructor for class ome.model.acquisition.Detector
Detector(Long, boolean) - Constructor for class ome.model.acquisition.Detector: Main constructor.
Detector(DetectorType, Instrument) - Constructor for class ome.model.acquisition.Detector
DETECTOR - Static variable in class ome.model.acquisition.DetectorSettings
DETECTOR - Static variable in class ome.model.acquisition.Instrument
Detector.Details - Class in ome.model.acquisition
DetectorAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
DetectorAnnotationLink() - Constructor for class ome.model.annotations.DetectorAnnotationLink
DetectorAnnotationLink(Long) - Constructor for class ome.model.annotations.DetectorAnnotationLink
DetectorAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DetectorAnnotationLink: Main constructor.
DetectorAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DetectorAnnotationLink
DetectorAnnotationLink.Details - Class in ome.model.annotations
detectorSettings - Variable in class ome.model.core.LogicalChannel
DetectorSettings - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
DetectorSettings() - Constructor for class ome.model.acquisition.DetectorSettings
DetectorSettings(Long) - Constructor for class ome.model.acquisition.DetectorSettings
DetectorSettings(Long, boolean) - Constructor for class ome.model.acquisition.DetectorSettings: Main constructor.
DetectorSettings(Detector) - Constructor for class ome.model.acquisition.DetectorSettings
DETECTORSETTINGS - Static variable in class ome.model.core.LogicalChannel
DetectorSettings.Details - Class in ome.model.acquisition
DetectorType - Class in ome.model.enums
DetectorType() - Constructor for class ome.model.enums.DetectorType
DetectorType(Long) - Constructor for class ome.model.enums.DetectorType
DetectorType(Long, boolean) - Constructor for class ome.model.enums.DetectorType: Main constructor.
DetectorType(String) - Constructor for class ome.model.enums.DetectorType
DetectorType.Details - Class in ome.model.enums
dichroic - Variable in class ome.model.acquisition.FilterSet
dichroic - Variable in class ome.model.acquisition.Instrument
dichroic - Variable in class ome.model.acquisition.LightPath
Dichroic - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Dichroic() - Constructor for class ome.model.acquisition.Dichroic
Dichroic(Long) - Constructor for class ome.model.acquisition.Dichroic
Dichroic(Long, boolean) - Constructor for class ome.model.acquisition.Dichroic: Main constructor.
Dichroic(Instrument) - Constructor for class ome.model.acquisition.Dichroic
DICHROIC - Static variable in class ome.model.acquisition.FilterSet
DICHROIC - Static variable in class ome.model.acquisition.Instrument
DICHROIC - Static variable in class ome.model.acquisition.LightPath
Dichroic.Details - Class in ome.model.acquisition
DichroicAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
DichroicAnnotationLink() - Constructor for class ome.model.annotations.DichroicAnnotationLink
DichroicAnnotationLink(Long) - Constructor for class ome.model.annotations.DichroicAnnotationLink
DichroicAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DichroicAnnotationLink: Main constructor.
DichroicAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DichroicAnnotationLink
DichroicAnnotationLink.Details - Class in ome.model.annotations
dimensionOrder - Variable in class ome.model.core.Pixels
DimensionOrder - Class in ome.model.enums
DimensionOrder() - Constructor for class ome.model.enums.DimensionOrder
DimensionOrder(Long) - Constructor for class ome.model.enums.DimensionOrder
DimensionOrder(Long, boolean) - Constructor for class ome.model.enums.DimensionOrder: Main constructor.
DimensionOrder(String) - Constructor for class ome.model.enums.DimensionOrder
DIMENSIONORDER - Static variable in class ome.model.core.Pixels
DimensionOrder.Details - Class in ome.model.enums
disassemble(Object) - Method in class ome.model.units.GenericEnumType
display - Variable in class ome.model.meta.Namespace
DISPLAY - Static variable in class ome.model.meta.Namespace
displayName - Variable in class ome.model.meta.Namespace
DISPLAYNAME - Static variable in class ome.model.meta.Namespace
dispose() - Method in class ome.util.PixelData: Attempt to free up any native memory resources associated with the data buffer.
doFilter(String, Object) - Method in class ome.util.ContextFilter
doFilter(String, Collection) - Method in class ome.util.ContextFilter
doFilter(String, Filterable) - Method in class ome.util.ContextFilter
DOUBLE - Static variable in class ome.util.PixelData: Identifies the type used to store pixel values.
DoubleAnnotation - Class in ome.model.annotations
DoubleAnnotation() - Constructor for class ome.model.annotations.DoubleAnnotation
DoubleAnnotation(Long) - Constructor for class ome.model.annotations.DoubleAnnotation
DoubleAnnotation(Long, boolean) - Constructor for class ome.model.annotations.DoubleAnnotation: Main constructor.
doubleValue - Variable in class ome.model.annotations.DoubleAnnotation
DOUBLEVALUE - Static variable in class ome.model.annotations.DoubleAnnotation
doUpdateRows(Serializable, PersistentCollection, SessionImplementor) - Method in class ome.util.CountCollectionPersister
down - Variable in class ome.model.meta.Node
DOWN - Static variable in class ome.model.meta.Node
DUMMY - Static variable in class ome.model.internal.Permissions: Marker object which can be set on objects to show that the Permissions instance given contains no value.

E

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Detector: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Dichroic: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Filter: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Instrument: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.LightPath: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.LightSource: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Objective: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.annotations.Annotation: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Dataset: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Folder: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Project: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.Channel: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.Image: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.OriginalFile: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.PlaneInfo: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.fs.Fileset: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in interface ome.model.IAnnotated
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Experimenter: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Namespace: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Node: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Session: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.roi.Roi: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.roi.Shape: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Plate: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Reagent: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Screen: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Well: takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedDataset(CBlock<E>) - Method in class ome.model.containers.Project: takes a CBlock and calls the block once for each ome.model.containers.Dataset while collecting the results.
eachLinkedDataset(CBlock<E>) - Method in class ome.model.core.Image: takes a CBlock and calls the block once for each ome.model.containers.Dataset while collecting the results.
eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.Filter: takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.
eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.FilterSet: takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.LightPath: takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.Filter: takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.
eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.FilterSet: takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.LightPath: takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedExperimenter(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup: takes a CBlock and calls the block once for each ome.model.meta.Experimenter while collecting the results.
eachLinkedExperimenterGroup(CBlock<E>) - Method in class ome.model.meta.Experimenter: takes a CBlock and calls the block once for each ome.model.meta.ExperimenterGroup while collecting the results.
eachLinkedFolder(CBlock<E>) - Method in class ome.model.core.Image: takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.
eachLinkedFolder(CBlock<E>) - Method in class ome.model.roi.Roi: takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.
eachLinkedImage(CBlock<E>) - Method in class ome.model.containers.Dataset: takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.
eachLinkedImage(CBlock<E>) - Method in class ome.model.containers.Folder: takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.
eachLinkedJob(CBlock<E>) - Method in class ome.model.fs.Fileset: takes a CBlock and calls the block once for each ome.model.jobs.Job while collecting the results.
eachLinkedOriginalFile(CBlock<E>) - Method in class ome.model.core.Pixels: takes a CBlock and calls the block once for each ome.model.core.OriginalFile while collecting the results.
eachLinkedOriginalFile(CBlock<E>) - Method in class ome.model.jobs.Job: takes a CBlock and calls the block once for each ome.model.core.OriginalFile while collecting the results.
eachLinkedPixels(CBlock<E>) - Method in class ome.model.core.OriginalFile: takes a CBlock and calls the block once for each ome.model.core.Pixels while collecting the results.
eachLinkedPlate(CBlock<E>) - Method in class ome.model.screen.Screen: takes a CBlock and calls the block once for each ome.model.screen.Plate while collecting the results.
eachLinkedProject(CBlock<E>) - Method in class ome.model.containers.Dataset: takes a CBlock and calls the block once for each ome.model.containers.Project while collecting the results.
eachLinkedReagent(CBlock<E>) - Method in class ome.model.screen.Well: takes a CBlock and calls the block once for each ome.model.screen.Reagent while collecting the results.
eachLinkedRoi(CBlock<E>) - Method in class ome.model.containers.Folder: takes a CBlock and calls the block once for each ome.model.roi.Roi while collecting the results.
eachLinkedScreen(CBlock<E>) - Method in class ome.model.screen.Plate: takes a CBlock and calls the block once for each ome.model.screen.Screen while collecting the results.
eachLinkedWell(CBlock<E>) - Method in class ome.model.screen.Reagent: takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.
EDITRESTRICTION - Static variable in class ome.model.internal.Permissions
ElectricPotential - Class in ome.model.units: class storing both a ElectricPotential and a unit for that ElectricPotential (e.g.
ElectricPotential() - Constructor for class ome.model.units.ElectricPotential: Deprecated.
ElectricPotential(double, String) - Constructor for class ome.model.units.ElectricPotential
ElectricPotential(double, UnitsElectricPotential) - Constructor for class ome.model.units.ElectricPotential
ElectricPotential(double, Unit<ElectricPotential>) - Constructor for class ome.model.units.ElectricPotential
ElectricPotential(ElectricPotential) - Constructor for class ome.model.units.ElectricPotential
ELECTRICPOTENTIAL - ome.model.units.UNITS
Ellipse - Class in ome.model.roi
Ellipse() - Constructor for class ome.model.roi.Ellipse
Ellipse(Long) - Constructor for class ome.model.roi.Ellipse
Ellipse(Long, boolean) - Constructor for class ome.model.roi.Ellipse: Main constructor.
email - Variable in class ome.model.meta.Experimenter
EMAIL - Static variable in class ome.model.meta.Experimenter
emissionFilterLink - Variable in class ome.model.acquisition.Filter
emissionFilterLink - Variable in class ome.model.acquisition.FilterSet
emissionFilterLink - Variable in class ome.model.acquisition.LightPath
EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.FilterSet
EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
emissionWave - Variable in class ome.model.core.LogicalChannel
EMISSIONWAVE - Static variable in class ome.model.core.LogicalChannel
EMPTY - Static variable in class ome.model.internal.Permissions: an immutable Permissions instance with all rights turned off.
EmptyIterator<E> - Class in ome.util: utility iterator which does nothing as quickly as possible.
EmptyIterator() - Constructor for class ome.util.EmptyIterator
endPlane - Variable in class ome.model.display.ProjectionDef
ENDPLANE - Static variable in class ome.model.display.ProjectionDef
endTime - Variable in class ome.model.screen.PlateAcquisition
endTime - Variable in class ome.parameters.Filter
endTime(Timestamp) - Method in class ome.parameters.Parameters
ENDTIME - Static variable in class ome.model.screen.PlateAcquisition
enter(Object) - Method in class ome.util.ContextFilter
entityId - Variable in class ome.model.meta.EventLog
entityId - Variable in class ome.model.meta.ExternalInfo
ENTITYID - Static variable in class ome.model.meta.EventLog
ENTITYID - Static variable in class ome.model.meta.ExternalInfo
entityType - Variable in class ome.model.meta.EventLog
entityType - Variable in class ome.model.meta.ExternalInfo
ENTITYTYPE - Static variable in class ome.model.meta.EventLog
ENTITYTYPE - Static variable in class ome.model.meta.ExternalInfo
entry(String, Object) - Method in class ome.util.RdfPrinter
equals(Object) - Method in class ome.model.enums.AcquisitionMode
equals(Object) - Method in class ome.model.enums.AdminPrivilege
equals(Object) - Method in class ome.model.enums.ArcType
equals(Object) - Method in class ome.model.enums.Binning
equals(Object) - Method in class ome.model.enums.ChecksumAlgorithm
equals(Object) - Method in class ome.model.enums.ContrastMethod
equals(Object) - Method in class ome.model.enums.Correction
equals(Object) - Method in class ome.model.enums.DetectorType
equals(Object) - Method in class ome.model.enums.DimensionOrder
equals(Object) - Method in class ome.model.enums.EventType
equals(Object) - Method in class ome.model.enums.ExperimentType
equals(Object) - Method in class ome.model.enums.Family
equals(Object) - Method in class ome.model.enums.FilamentType
equals(Object) - Method in class ome.model.enums.FilterType
equals(Object) - Method in class ome.model.enums.Format
equals(Object) - Method in class ome.model.enums.Illumination
equals(Object) - Method in class ome.model.enums.Immersion
equals(Object) - Method in class ome.model.enums.LaserMedium
equals(Object) - Method in class ome.model.enums.LaserType
equals(Object) - Method in class ome.model.enums.Medium
equals(Object) - Method in class ome.model.enums.MicrobeamManipulationType
equals(Object) - Method in class ome.model.enums.MicroscopeType
equals(Object) - Method in class ome.model.enums.PhotometricInterpretation
equals(Object) - Method in class ome.model.enums.PixelsType
equals(Object) - Method in class ome.model.enums.ProjectionAxis
equals(Object) - Method in class ome.model.enums.ProjectionType
equals(Object) - Method in class ome.model.enums.Pulse
equals(Object) - Method in class ome.model.enums.RenderingModel
equals(Object) - Method in class ome.model.internal.NamedValue
equals(Object) - Method in class ome.model.jobs.JobStatus
equals(Object) - Method in class ome.model.units.ElectricPotential
equals(Object) - Method in class ome.model.units.Frequency
equals(Object) - Method in class ome.model.units.Length
equals(Object) - Method in class ome.model.units.Power
equals(Object) - Method in class ome.model.units.Pressure
equals(Object) - Method in class ome.model.units.Temperature
equals(Object) - Method in class ome.model.units.Time
equals(Object) - Method in class ome.parameters.QueryParameter
equals(Object) - Method in class ome.util.LSID
equals(Object, Object) - Method in class ome.model.units.GenericEnumType
errorIfUnloaded() - Method in class ome.model.acquisition.Detector
errorIfUnloaded() - Method in class ome.model.acquisition.DetectorSettings
errorIfUnloaded() - Method in class ome.model.acquisition.Dichroic
errorIfUnloaded() - Method in class ome.model.acquisition.Filter
errorIfUnloaded() - Method in class ome.model.acquisition.FilterSet
errorIfUnloaded() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
errorIfUnloaded() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
errorIfUnloaded() - Method in class ome.model.acquisition.ImagingEnvironment
errorIfUnloaded() - Method in class ome.model.acquisition.Instrument
errorIfUnloaded() - Method in class ome.model.acquisition.LightPath
errorIfUnloaded() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
errorIfUnloaded() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
errorIfUnloaded() - Method in class ome.model.acquisition.LightSettings
errorIfUnloaded() - Method in class ome.model.acquisition.LightSource
errorIfUnloaded() - Method in class ome.model.acquisition.Microscope
errorIfUnloaded() - Method in class ome.model.acquisition.Objective
errorIfUnloaded() - Method in class ome.model.acquisition.ObjectiveSettings
errorIfUnloaded() - Method in class ome.model.acquisition.OTF
errorIfUnloaded() - Method in class ome.model.acquisition.StageLabel
errorIfUnloaded() - Method in class ome.model.acquisition.TransmittanceRange
errorIfUnloaded() - Method in class ome.model.annotations.Annotation
errorIfUnloaded() - Method in class ome.model.annotations.AnnotationAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.ChannelAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.DatasetAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.DetectorAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.DichroicAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.ExperimenterAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.FilesetAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.FilterAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.FolderAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.ImageAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.InstrumentAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.LightPathAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.LightSourceAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.NamespaceAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.NodeAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.ObjectiveAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.OriginalFileAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.PlateAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.ProjectAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.ReagentAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.RoiAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.ScreenAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.SessionAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.ShapeAnnotationLink
errorIfUnloaded() - Method in class ome.model.annotations.WellAnnotationLink
errorIfUnloaded() - Method in class ome.model.containers.Dataset
errorIfUnloaded() - Method in class ome.model.containers.DatasetImageLink
errorIfUnloaded() - Method in class ome.model.containers.Folder
errorIfUnloaded() - Method in class ome.model.containers.FolderImageLink
errorIfUnloaded() - Method in class ome.model.containers.FolderRoiLink
errorIfUnloaded() - Method in class ome.model.containers.Project
errorIfUnloaded() - Method in class ome.model.containers.ProjectDatasetLink
errorIfUnloaded() - Method in class ome.model.core.Channel
errorIfUnloaded() - Method in class ome.model.core.Image
errorIfUnloaded() - Method in class ome.model.core.LogicalChannel
errorIfUnloaded() - Method in class ome.model.core.OriginalFile
errorIfUnloaded() - Method in class ome.model.core.Pixels
errorIfUnloaded() - Method in class ome.model.core.PixelsOriginalFileMap
errorIfUnloaded() - Method in class ome.model.core.PlaneInfo
errorIfUnloaded() - Method in class ome.model.display.ChannelBinding
errorIfUnloaded() - Method in class ome.model.display.CodomainMapContext
errorIfUnloaded() - Method in class ome.model.display.ProjectionDef
errorIfUnloaded() - Method in class ome.model.display.QuantumDef
errorIfUnloaded() - Method in class ome.model.display.RenderingDef
errorIfUnloaded() - Method in class ome.model.display.Thumbnail
errorIfUnloaded() - Method in class ome.model.enums.AcquisitionMode
errorIfUnloaded() - Method in class ome.model.enums.AdminPrivilege
errorIfUnloaded() - Method in class ome.model.enums.ArcType
errorIfUnloaded() - Method in class ome.model.enums.Binning
errorIfUnloaded() - Method in class ome.model.enums.ChecksumAlgorithm
errorIfUnloaded() - Method in class ome.model.enums.ContrastMethod
errorIfUnloaded() - Method in class ome.model.enums.Correction
errorIfUnloaded() - Method in class ome.model.enums.DetectorType
errorIfUnloaded() - Method in class ome.model.enums.DimensionOrder
errorIfUnloaded() - Method in class ome.model.enums.EventType
errorIfUnloaded() - Method in class ome.model.enums.ExperimentType
errorIfUnloaded() - Method in class ome.model.enums.Family
errorIfUnloaded() - Method in class ome.model.enums.FilamentType
errorIfUnloaded() - Method in class ome.model.enums.FilterType
errorIfUnloaded() - Method in class ome.model.enums.Format
errorIfUnloaded() - Method in class ome.model.enums.Illumination
errorIfUnloaded() - Method in class ome.model.enums.Immersion
errorIfUnloaded() - Method in class ome.model.enums.LaserMedium
errorIfUnloaded() - Method in class ome.model.enums.LaserType
errorIfUnloaded() - Method in class ome.model.enums.Medium
errorIfUnloaded() - Method in class ome.model.enums.MicrobeamManipulationType
errorIfUnloaded() - Method in class ome.model.enums.MicroscopeType
errorIfUnloaded() - Method in class ome.model.enums.PhotometricInterpretation
errorIfUnloaded() - Method in class ome.model.enums.PixelsType
errorIfUnloaded() - Method in class ome.model.enums.ProjectionAxis
errorIfUnloaded() - Method in class ome.model.enums.ProjectionType
errorIfUnloaded() - Method in class ome.model.enums.Pulse
errorIfUnloaded() - Method in class ome.model.enums.RenderingModel
errorIfUnloaded() - Method in class ome.model.experiment.Experiment
errorIfUnloaded() - Method in class ome.model.experiment.MicrobeamManipulation
errorIfUnloaded() - Method in class ome.model.fs.Fileset
errorIfUnloaded() - Method in class ome.model.fs.FilesetEntry
errorIfUnloaded() - Method in class ome.model.fs.FilesetJobLink
errorIfUnloaded() - Method in class ome.model.internal.Link
errorIfUnloaded() - Method in class ome.model.jobs.Job
errorIfUnloaded() - Method in class ome.model.jobs.JobOriginalFileLink
errorIfUnloaded() - Method in class ome.model.jobs.JobStatus
errorIfUnloaded() - Method in class ome.model.meta.DBPatch
errorIfUnloaded() - Method in class ome.model.meta.Event
errorIfUnloaded() - Method in class ome.model.meta.EventLog
errorIfUnloaded() - Method in class ome.model.meta.Experimenter
errorIfUnloaded() - Method in class ome.model.meta.ExperimenterGroup
errorIfUnloaded() - Method in class ome.model.meta.ExternalInfo
errorIfUnloaded() - Method in class ome.model.meta.GroupExperimenterMap
errorIfUnloaded() - Method in class ome.model.meta.Namespace
errorIfUnloaded() - Method in class ome.model.meta.Node
errorIfUnloaded() - Method in class ome.model.meta.Session
errorIfUnloaded() - Method in class ome.model.meta.ShareMember
errorIfUnloaded() - Method in class ome.model.roi.AffineTransform
errorIfUnloaded() - Method in class ome.model.roi.Roi
errorIfUnloaded() - Method in class ome.model.roi.Shape
errorIfUnloaded() - Method in class ome.model.screen.Plate
errorIfUnloaded() - Method in class ome.model.screen.PlateAcquisition
errorIfUnloaded() - Method in class ome.model.screen.Reagent
errorIfUnloaded() - Method in class ome.model.screen.Screen
errorIfUnloaded() - Method in class ome.model.screen.ScreenPlateLink
errorIfUnloaded() - Method in class ome.model.screen.Well
errorIfUnloaded() - Method in class ome.model.screen.WellReagentLink
errorIfUnloaded() - Method in class ome.model.screen.WellSample
errorIfUnloaded() - Method in class ome.model.stats.StatsInfo
event - Variable in class ome.model.meta.EventLog
Event - Class in ome.model.meta
Event() - Constructor for class ome.model.meta.Event
Event(Long) - Constructor for class ome.model.meta.Event
Event(Long, boolean) - Constructor for class ome.model.meta.Event: Main constructor.
Event(Timestamp, Experimenter, ExperimenterGroup, EventType, Session) - Constructor for class ome.model.meta.Event
EVENT - Static variable in class ome.model.meta.EventLog
EVENT_FILTER - Static variable in class ome.model.acquisition.Arc
EVENT_FILTER - Static variable in class ome.model.acquisition.Detector
EVENT_FILTER - Static variable in class ome.model.acquisition.DetectorSettings
EVENT_FILTER - Static variable in class ome.model.acquisition.Dichroic
EVENT_FILTER - Static variable in class ome.model.acquisition.Filament
EVENT_FILTER - Static variable in class ome.model.acquisition.Filter
EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSet
EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
EVENT_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource
EVENT_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment
EVENT_FILTER - Static variable in class ome.model.acquisition.Instrument
EVENT_FILTER - Static variable in class ome.model.acquisition.Laser
EVENT_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode
EVENT_FILTER - Static variable in class ome.model.acquisition.LightPath
EVENT_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
EVENT_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
EVENT_FILTER - Static variable in class ome.model.acquisition.LightSettings
EVENT_FILTER - Static variable in class ome.model.acquisition.LightSource
EVENT_FILTER - Static variable in class ome.model.acquisition.Microscope
EVENT_FILTER - Static variable in class ome.model.acquisition.Objective
EVENT_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings
EVENT_FILTER - Static variable in class ome.model.acquisition.OTF
EVENT_FILTER - Static variable in class ome.model.acquisition.StageLabel
EVENT_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange
EVENT_FILTER - Static variable in class ome.model.annotations.Annotation
EVENT_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.BasicAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.CommentAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.FileAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.ListAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.LongAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.MapAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.NumericAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.TagAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.TermAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.TextAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.TypeAnnotation
EVENT_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink
EVENT_FILTER - Static variable in class ome.model.annotations.XmlAnnotation
EVENT_FILTER - Static variable in class ome.model.containers.Dataset
EVENT_FILTER - Static variable in class ome.model.containers.DatasetImageLink
EVENT_FILTER - Static variable in class ome.model.containers.Folder
EVENT_FILTER - Static variable in class ome.model.containers.FolderImageLink
EVENT_FILTER - Static variable in class ome.model.containers.FolderRoiLink
EVENT_FILTER - Static variable in class ome.model.containers.Project
EVENT_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink
EVENT_FILTER - Static variable in class ome.model.core.Channel
EVENT_FILTER - Static variable in class ome.model.core.Image
EVENT_FILTER - Static variable in class ome.model.core.LogicalChannel
EVENT_FILTER - Static variable in class ome.model.core.OriginalFile
EVENT_FILTER - Static variable in class ome.model.core.Pixels
EVENT_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap
EVENT_FILTER - Static variable in class ome.model.core.PlaneInfo
EVENT_FILTER - Static variable in class ome.model.display.ChannelBinding
EVENT_FILTER - Static variable in class ome.model.display.CodomainMapContext
EVENT_FILTER - Static variable in class ome.model.display.ContrastStretchingContext
EVENT_FILTER - Static variable in class ome.model.display.PlaneSlicingContext
EVENT_FILTER - Static variable in class ome.model.display.ProjectionDef
EVENT_FILTER - Static variable in class ome.model.display.QuantumDef
EVENT_FILTER - Static variable in class ome.model.display.RenderingDef
EVENT_FILTER - Static variable in class ome.model.display.ReverseIntensityContext
EVENT_FILTER - Static variable in class ome.model.display.Thumbnail
EVENT_FILTER - Static variable in class ome.model.experiment.Experiment
EVENT_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation
EVENT_FILTER - Static variable in class ome.model.fs.Fileset
EVENT_FILTER - Static variable in class ome.model.fs.FilesetEntry
EVENT_FILTER - Static variable in class ome.model.fs.FilesetJobLink
EVENT_FILTER - Static variable in class ome.model.internal.Link
EVENT_FILTER - Static variable in class ome.model.jobs.ImportJob: Deprecated.
EVENT_FILTER - Static variable in class ome.model.jobs.IndexingJob
EVENT_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob
EVENT_FILTER - Static variable in class ome.model.jobs.Job
EVENT_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink
EVENT_FILTER - Static variable in class ome.model.jobs.MetadataImportJob
EVENT_FILTER - Static variable in class ome.model.jobs.ParseJob
EVENT_FILTER - Static variable in class ome.model.jobs.PixelDataJob
EVENT_FILTER - Static variable in class ome.model.jobs.ScriptJob
EVENT_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob
EVENT_FILTER - Static variable in class ome.model.jobs.UploadJob
EVENT_FILTER - Static variable in class ome.model.meta.ExternalInfo
EVENT_FILTER - Static variable in class ome.model.roi.AffineTransform
EVENT_FILTER - Static variable in class ome.model.roi.Ellipse
EVENT_FILTER - Static variable in class ome.model.roi.Label
EVENT_FILTER - Static variable in class ome.model.roi.Line
EVENT_FILTER - Static variable in class ome.model.roi.Mask
EVENT_FILTER - Static variable in class ome.model.roi.Path: Deprecated.
EVENT_FILTER - Static variable in class ome.model.roi.Point
EVENT_FILTER - Static variable in class ome.model.roi.Polygon
EVENT_FILTER - Static variable in class ome.model.roi.Polyline
EVENT_FILTER - Static variable in class ome.model.roi.Rectangle
EVENT_FILTER - Static variable in class ome.model.roi.Roi
EVENT_FILTER - Static variable in class ome.model.roi.Shape
EVENT_FILTER - Static variable in class ome.model.screen.Plate
EVENT_FILTER - Static variable in class ome.model.screen.PlateAcquisition
EVENT_FILTER - Static variable in class ome.model.screen.Reagent
EVENT_FILTER - Static variable in class ome.model.screen.Screen
EVENT_FILTER - Static variable in class ome.model.screen.ScreenPlateLink
EVENT_FILTER - Static variable in class ome.model.screen.Well
EVENT_FILTER - Static variable in class ome.model.screen.WellReagentLink
EVENT_FILTER - Static variable in class ome.model.screen.WellSample
EVENT_FILTER - Static variable in class ome.model.stats.StatsInfo
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
EVENT_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel
EVENT_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels
EVENT_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder
EVENT_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project
EVENT_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image
EVENT_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument
EVENT_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument
EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
EVENT_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
EVENT_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument
EVENT_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument
EVENT_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image
EVENT_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi
EVENT_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset
EVENT_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder
EVENT_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset
EVENT_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset
EVENT_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
EVENT_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
EVENT_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
EVENT_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
EVENT_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
EVENT_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument
EVENT_FILTER_PIXELS - Static variable in class ome.model.core.Image
EVENT_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
EVENT_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
EVENT_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels
EVENT_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
EVENT_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen
EVENT_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef
EVENT_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset
EVENT_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well
EVENT_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen
EVENT_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder
EVENT_FILTER_ROIS - Static variable in class ome.model.core.Image
EVENT_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate
EVENT_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels
EVENT_FILTER_SHAPES - Static variable in class ome.model.roi.Roi
EVENT_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
EVENT_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels
EVENT_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset
EVENT_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef
EVENT_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent
EVENT_FILTER_WELLS - Static variable in class ome.model.screen.Plate
EVENT_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
EVENT_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image
EVENT_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well
Event.Details - Class in ome.model.meta
event2timestamp(Event) - Method in class ome.util.ModelMapper
eventId - Variable in class ome.util.SqlAction.DeleteLog
EventLog - Class in ome.model.meta
EventLog() - Constructor for class ome.model.meta.EventLog
EventLog(Long) - Constructor for class ome.model.meta.EventLog
EventLog(Long, boolean) - Constructor for class ome.model.meta.EventLog: Main constructor.
EventLog(Long, String, String, Event) - Constructor for class ome.model.meta.EventLog
EventLog.Details - Class in ome.model.meta
events - Variable in class ome.model.meta.Session
EVENTS - Static variable in class ome.model.meta.Session
EventType - Class in ome.model.enums
EventType() - Constructor for class ome.model.enums.EventType
EventType(Long) - Constructor for class ome.model.enums.EventType
EventType(Long, boolean) - Constructor for class ome.model.enums.EventType: Main constructor.
EventType(String) - Constructor for class ome.model.enums.EventType
EventType.Details - Class in ome.model.enums
EXAHERTZ - ome.model.enums.UnitsFrequency
EXAMETER - ome.model.enums.UnitsLength
EXAPASCAL - ome.model.enums.UnitsPressure
EXASECOND - ome.model.enums.UnitsTime
EXAVOLT - ome.model.enums.UnitsElectricPotential
EXAWATT - ome.model.enums.UnitsPower
excitationFilterLink - Variable in class ome.model.acquisition.Filter
excitationFilterLink - Variable in class ome.model.acquisition.FilterSet
excitationFilterLink - Variable in class ome.model.acquisition.LightPath
EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.FilterSet
EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
excitationWave - Variable in class ome.model.core.LogicalChannel
EXCITATIONWAVE - Static variable in class ome.model.core.LogicalChannel
exit(Object) - Method in class ome.util.ContextFilter
exp(long) - Method in class ome.parameters.Parameters
experiment - Variable in class ome.model.core.Image
experiment - Variable in class ome.model.experiment.MicrobeamManipulation
Experiment - Class in ome.model.experiment: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Experiment() - Constructor for class ome.model.experiment.Experiment
Experiment(Long) - Constructor for class ome.model.experiment.Experiment
Experiment(Long, boolean) - Constructor for class ome.model.experiment.Experiment: Main constructor.
Experiment(ExperimentType) - Constructor for class ome.model.experiment.Experiment
EXPERIMENT - Static variable in class ome.model.core.Image
EXPERIMENT - Static variable in class ome.model.experiment.MicrobeamManipulation
Experiment.Details - Class in ome.model.experiment
experimenter - Variable in class ome.model.meta.Event
Experimenter - Class in ome.model.meta
Experimenter() - Constructor for class ome.model.meta.Experimenter
Experimenter(Long) - Constructor for class ome.model.meta.Experimenter
Experimenter(Long, boolean) - Constructor for class ome.model.meta.Experimenter: Main constructor.
Experimenter(String, String, String, Boolean) - Constructor for class ome.model.meta.Experimenter
EXPERIMENTER - Static variable in class ome.model.meta.Event
Experimenter.Details - Class in ome.model.meta
ExperimenterAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ExperimenterAnnotationLink() - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
ExperimenterAnnotationLink(Long) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
ExperimenterAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink: Main constructor.
ExperimenterAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
ExperimenterAnnotationLink.Details - Class in ome.model.annotations
experimenterGroup - Variable in class ome.model.meta.Event
ExperimenterGroup - Class in ome.model.meta
ExperimenterGroup() - Constructor for class ome.model.meta.ExperimenterGroup
ExperimenterGroup(Long) - Constructor for class ome.model.meta.ExperimenterGroup
ExperimenterGroup(Long, boolean) - Constructor for class ome.model.meta.ExperimenterGroup: Main constructor.
ExperimenterGroup(String, Boolean) - Constructor for class ome.model.meta.ExperimenterGroup
EXPERIMENTERGROUP - Static variable in class ome.model.meta.Event
ExperimenterGroup.Details - Class in ome.model.meta
ExperimenterGroupAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ExperimenterGroupAnnotationLink() - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
ExperimenterGroupAnnotationLink(Long) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
ExperimenterGroupAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink: Main constructor.
ExperimenterGroupAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
ExperimenterGroupAnnotationLink.Details - Class in ome.model.annotations
ExperimentType - Class in ome.model.enums
ExperimentType() - Constructor for class ome.model.enums.ExperimentType
ExperimentType(Long) - Constructor for class ome.model.enums.ExperimentType
ExperimentType(Long, boolean) - Constructor for class ome.model.enums.ExperimentType: Main constructor.
ExperimentType(String) - Constructor for class ome.model.enums.ExperimentType
ExperimentType.Details - Class in ome.model.enums
ExpiredCredentialException - Exception in ome.conditions: Correct username and credentials provided, but credentials expired.
ExpiredCredentialException(String) - Constructor for exception ome.conditions.ExpiredCredentialException
exposureTime - Variable in class ome.model.core.PlaneInfo
EXPOSURETIME - Static variable in class ome.model.core.PlaneInfo
externalDescription - Variable in class ome.model.screen.Well
EXTERNALDESCRIPTION - Static variable in class ome.model.screen.Well
externalIdentifier - Variable in class ome.model.screen.Plate
externalIdentifier - Variable in class ome.model.screen.Well
EXTERNALIDENTIFIER - Static variable in class ome.model.screen.Plate
EXTERNALIDENTIFIER - Static variable in class ome.model.screen.Well
ExternalInfo - Class in ome.model.meta: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ExternalInfo() - Constructor for class ome.model.meta.ExternalInfo
ExternalInfo(Long) - Constructor for class ome.model.meta.ExternalInfo
ExternalInfo(Long, boolean) - Constructor for class ome.model.meta.ExternalInfo: Main constructor.
ExternalInfo(Long, String) - Constructor for class ome.model.meta.ExternalInfo
EXTERNALINFO - Static variable in class ome.model.internal.Details
ExternalInfo.Details - Class in ome.model.meta

F

FAHRENHEIT - ome.model.enums.UnitsTemperature
family - Variable in class ome.model.display.ChannelBinding
Family - Class in ome.model.enums
Family() - Constructor for class ome.model.enums.Family
Family(Long) - Constructor for class ome.model.enums.Family
Family(Long, boolean) - Constructor for class ome.model.enums.Family: Main constructor.
Family(String) - Constructor for class ome.model.enums.Family
FAMILY - Static variable in class ome.model.display.ChannelBinding
Family.Details - Class in ome.model.enums
FEMTOHERTZ - ome.model.enums.UnitsFrequency
FEMTOMETER - ome.model.enums.UnitsLength
FEMTOPASCAL - ome.model.enums.UnitsPressure
FEMTOSECOND - ome.model.enums.UnitsTime
FEMTOVOLT - ome.model.enums.UnitsElectricPotential
FEMTOWATT - ome.model.enums.UnitsPower
fields() - Method in class ome.model.acquisition.Arc
fields() - Method in class ome.model.acquisition.Detector
fields() - Method in class ome.model.acquisition.DetectorSettings
fields() - Method in class ome.model.acquisition.Dichroic
fields() - Method in class ome.model.acquisition.Filament
fields() - Method in class ome.model.acquisition.Filter
fields() - Method in class ome.model.acquisition.FilterSet
fields() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
fields() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
fields() - Method in class ome.model.acquisition.GenericExcitationSource
fields() - Method in class ome.model.acquisition.ImagingEnvironment
fields() - Method in class ome.model.acquisition.Instrument
fields() - Method in class ome.model.acquisition.Laser
fields() - Method in class ome.model.acquisition.LightEmittingDiode
fields() - Method in class ome.model.acquisition.LightPath
fields() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
fields() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
fields() - Method in class ome.model.acquisition.LightSettings
fields() - Method in class ome.model.acquisition.LightSource
fields() - Method in class ome.model.acquisition.Microscope
fields() - Method in class ome.model.acquisition.Objective
fields() - Method in class ome.model.acquisition.ObjectiveSettings
fields() - Method in class ome.model.acquisition.OTF
fields() - Method in class ome.model.acquisition.StageLabel
fields() - Method in class ome.model.acquisition.TransmittanceRange
fields() - Method in class ome.model.annotations.Annotation
fields() - Method in class ome.model.annotations.AnnotationAnnotationLink
fields() - Method in class ome.model.annotations.BasicAnnotation
fields() - Method in class ome.model.annotations.BooleanAnnotation
fields() - Method in class ome.model.annotations.ChannelAnnotationLink
fields() - Method in class ome.model.annotations.CommentAnnotation
fields() - Method in class ome.model.annotations.DatasetAnnotationLink
fields() - Method in class ome.model.annotations.DetectorAnnotationLink
fields() - Method in class ome.model.annotations.DichroicAnnotationLink
fields() - Method in class ome.model.annotations.DoubleAnnotation
fields() - Method in class ome.model.annotations.ExperimenterAnnotationLink
fields() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
fields() - Method in class ome.model.annotations.FileAnnotation
fields() - Method in class ome.model.annotations.FilesetAnnotationLink
fields() - Method in class ome.model.annotations.FilterAnnotationLink
fields() - Method in class ome.model.annotations.FolderAnnotationLink
fields() - Method in class ome.model.annotations.ImageAnnotationLink
fields() - Method in class ome.model.annotations.InstrumentAnnotationLink
fields() - Method in class ome.model.annotations.LightPathAnnotationLink
fields() - Method in class ome.model.annotations.LightSourceAnnotationLink
fields() - Method in class ome.model.annotations.ListAnnotation
fields() - Method in class ome.model.annotations.LongAnnotation
fields() - Method in class ome.model.annotations.MapAnnotation
fields() - Method in class ome.model.annotations.NamespaceAnnotationLink
fields() - Method in class ome.model.annotations.NodeAnnotationLink
fields() - Method in class ome.model.annotations.NumericAnnotation
fields() - Method in class ome.model.annotations.ObjectiveAnnotationLink
fields() - Method in class ome.model.annotations.OriginalFileAnnotationLink
fields() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
fields() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
fields() - Method in class ome.model.annotations.PlateAnnotationLink
fields() - Method in class ome.model.annotations.ProjectAnnotationLink
fields() - Method in class ome.model.annotations.ReagentAnnotationLink
fields() - Method in class ome.model.annotations.RoiAnnotationLink
fields() - Method in class ome.model.annotations.ScreenAnnotationLink
fields() - Method in class ome.model.annotations.SessionAnnotationLink
fields() - Method in class ome.model.annotations.ShapeAnnotationLink
fields() - Method in class ome.model.annotations.TagAnnotation
fields() - Method in class ome.model.annotations.TermAnnotation
fields() - Method in class ome.model.annotations.TextAnnotation
fields() - Method in class ome.model.annotations.TimestampAnnotation
fields() - Method in class ome.model.annotations.TypeAnnotation
fields() - Method in class ome.model.annotations.WellAnnotationLink
fields() - Method in class ome.model.annotations.XmlAnnotation
fields() - Method in class ome.model.containers.Dataset
fields() - Method in class ome.model.containers.DatasetImageLink
fields() - Method in class ome.model.containers.Folder
fields() - Method in class ome.model.containers.FolderImageLink
fields() - Method in class ome.model.containers.FolderRoiLink
fields() - Method in class ome.model.containers.Project
fields() - Method in class ome.model.containers.ProjectDatasetLink
fields() - Method in class ome.model.core.Channel
fields() - Method in class ome.model.core.Image
fields() - Method in class ome.model.core.LogicalChannel
fields() - Method in class ome.model.core.OriginalFile
fields() - Method in class ome.model.core.Pixels
fields() - Method in class ome.model.core.PixelsOriginalFileMap
fields() - Method in class ome.model.core.PlaneInfo
fields() - Method in class ome.model.display.ChannelBinding
fields() - Method in class ome.model.display.CodomainMapContext
fields() - Method in class ome.model.display.ContrastStretchingContext
fields() - Method in class ome.model.display.PlaneSlicingContext
fields() - Method in class ome.model.display.ProjectionDef
fields() - Method in class ome.model.display.QuantumDef
fields() - Method in class ome.model.display.RenderingDef
fields() - Method in class ome.model.display.ReverseIntensityContext
fields() - Method in class ome.model.display.Thumbnail
fields() - Method in class ome.model.enums.AcquisitionMode
fields() - Method in class ome.model.enums.AdminPrivilege
fields() - Method in class ome.model.enums.ArcType
fields() - Method in class ome.model.enums.Binning
fields() - Method in class ome.model.enums.ChecksumAlgorithm
fields() - Method in class ome.model.enums.ContrastMethod
fields() - Method in class ome.model.enums.Correction
fields() - Method in class ome.model.enums.DetectorType
fields() - Method in class ome.model.enums.DimensionOrder
fields() - Method in class ome.model.enums.EventType
fields() - Method in class ome.model.enums.ExperimentType
fields() - Method in class ome.model.enums.Family
fields() - Method in class ome.model.enums.FilamentType
fields() - Method in class ome.model.enums.FilterType
fields() - Method in class ome.model.enums.Format
fields() - Method in class ome.model.enums.Illumination
fields() - Method in class ome.model.enums.Immersion
fields() - Method in class ome.model.enums.LaserMedium
fields() - Method in class ome.model.enums.LaserType
fields() - Method in class ome.model.enums.Medium
fields() - Method in class ome.model.enums.MicrobeamManipulationType
fields() - Method in class ome.model.enums.MicroscopeType
fields() - Method in class ome.model.enums.PhotometricInterpretation
fields() - Method in class ome.model.enums.PixelsType
fields() - Method in class ome.model.enums.ProjectionAxis
fields() - Method in class ome.model.enums.ProjectionType
fields() - Method in class ome.model.enums.Pulse
fields() - Method in class ome.model.enums.RenderingModel
fields() - Method in class ome.model.experiment.Experiment
fields() - Method in class ome.model.experiment.MicrobeamManipulation
fields() - Method in class ome.model.fs.Fileset
fields() - Method in class ome.model.fs.FilesetEntry
fields() - Method in class ome.model.fs.FilesetJobLink
fields() - Method in class ome.model.internal.Link
fields() - Method in interface ome.model.IObject: returns a Set of field names that belong to this class
fields() - Method in class ome.model.jobs.ImportJob: Deprecated.
fields() - Method in class ome.model.jobs.IndexingJob
fields() - Method in class ome.model.jobs.IntegrityCheckJob
fields() - Method in class ome.model.jobs.Job
fields() - Method in class ome.model.jobs.JobOriginalFileLink
fields() - Method in class ome.model.jobs.JobStatus
fields() - Method in class ome.model.jobs.MetadataImportJob
fields() - Method in class ome.model.jobs.ParseJob
fields() - Method in class ome.model.jobs.PixelDataJob
fields() - Method in class ome.model.jobs.ScriptJob
fields() - Method in class ome.model.jobs.ThumbnailGenerationJob
fields() - Method in class ome.model.jobs.UploadJob
fields() - Method in class ome.model.meta.DBPatch
fields() - Method in class ome.model.meta.Event
fields() - Method in class ome.model.meta.EventLog
fields() - Method in class ome.model.meta.Experimenter
fields() - Method in class ome.model.meta.ExperimenterGroup
fields() - Method in class ome.model.meta.ExternalInfo
fields() - Method in class ome.model.meta.GroupExperimenterMap
fields() - Method in class ome.model.meta.Namespace
fields() - Method in class ome.model.meta.Node
fields() - Method in class ome.model.meta.Session
fields() - Method in class ome.model.meta.Share
fields() - Method in class ome.model.meta.ShareMember
fields() - Method in class ome.model.roi.AffineTransform
fields() - Method in class ome.model.roi.Ellipse
fields() - Method in class ome.model.roi.Label
fields() - Method in class ome.model.roi.Line
fields() - Method in class ome.model.roi.Mask
fields() - Method in class ome.model.roi.Path: Deprecated.
fields() - Method in class ome.model.roi.Point
fields() - Method in class ome.model.roi.Polygon
fields() - Method in class ome.model.roi.Polyline
fields() - Method in class ome.model.roi.Rectangle
fields() - Method in class ome.model.roi.Roi
fields() - Method in class ome.model.roi.Shape
fields() - Method in class ome.model.screen.Plate
fields() - Method in class ome.model.screen.PlateAcquisition
fields() - Method in class ome.model.screen.Reagent
fields() - Method in class ome.model.screen.Screen
fields() - Method in class ome.model.screen.ScreenPlateLink
fields() - Method in class ome.model.screen.Well
fields() - Method in class ome.model.screen.WellReagentLink
fields() - Method in class ome.model.screen.WellSample
fields() - Method in class ome.model.stats.StatsInfo
fields() - Method in class ome.util.PermDetails
FIELDS - Static variable in class ome.model.acquisition.Arc
FIELDS - Static variable in class ome.model.acquisition.Detector
FIELDS - Static variable in class ome.model.acquisition.DetectorSettings
FIELDS - Static variable in class ome.model.acquisition.Dichroic
FIELDS - Static variable in class ome.model.acquisition.Filament
FIELDS - Static variable in class ome.model.acquisition.Filter
FIELDS - Static variable in class ome.model.acquisition.FilterSet
FIELDS - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
FIELDS - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
FIELDS - Static variable in class ome.model.acquisition.GenericExcitationSource
FIELDS - Static variable in class ome.model.acquisition.ImagingEnvironment
FIELDS - Static variable in class ome.model.acquisition.Instrument
FIELDS - Static variable in class ome.model.acquisition.Laser
FIELDS - Static variable in class ome.model.acquisition.LightEmittingDiode
FIELDS - Static variable in class ome.model.acquisition.LightPath
FIELDS - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
FIELDS - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
FIELDS - Static variable in class ome.model.acquisition.LightSettings
FIELDS - Static variable in class ome.model.acquisition.LightSource
FIELDS - Static variable in class ome.model.acquisition.Microscope
FIELDS - Static variable in class ome.model.acquisition.Objective
FIELDS - Static variable in class ome.model.acquisition.ObjectiveSettings
FIELDS - Static variable in class ome.model.acquisition.OTF
FIELDS - Static variable in class ome.model.acquisition.StageLabel
FIELDS - Static variable in class ome.model.acquisition.TransmittanceRange
FIELDS - Static variable in class ome.model.annotations.Annotation
FIELDS - Static variable in class ome.model.annotations.AnnotationAnnotationLink
FIELDS - Static variable in class ome.model.annotations.BasicAnnotation
FIELDS - Static variable in class ome.model.annotations.BooleanAnnotation
FIELDS - Static variable in class ome.model.annotations.ChannelAnnotationLink
FIELDS - Static variable in class ome.model.annotations.CommentAnnotation
FIELDS - Static variable in class ome.model.annotations.DatasetAnnotationLink
FIELDS - Static variable in class ome.model.annotations.DetectorAnnotationLink
FIELDS - Static variable in class ome.model.annotations.DichroicAnnotationLink
FIELDS - Static variable in class ome.model.annotations.DoubleAnnotation
FIELDS - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
FIELDS - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
FIELDS - Static variable in class ome.model.annotations.FileAnnotation
FIELDS - Static variable in class ome.model.annotations.FilesetAnnotationLink
FIELDS - Static variable in class ome.model.annotations.FilterAnnotationLink
FIELDS - Static variable in class ome.model.annotations.FolderAnnotationLink
FIELDS - Static variable in class ome.model.annotations.ImageAnnotationLink
FIELDS - Static variable in class ome.model.annotations.InstrumentAnnotationLink
FIELDS - Static variable in class ome.model.annotations.LightPathAnnotationLink
FIELDS - Static variable in class ome.model.annotations.LightSourceAnnotationLink
FIELDS - Static variable in class ome.model.annotations.ListAnnotation
FIELDS - Static variable in class ome.model.annotations.LongAnnotation
FIELDS - Static variable in class ome.model.annotations.MapAnnotation
FIELDS - Static variable in class ome.model.annotations.NamespaceAnnotationLink
FIELDS - Static variable in class ome.model.annotations.NodeAnnotationLink
FIELDS - Static variable in class ome.model.annotations.NumericAnnotation
FIELDS - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
FIELDS - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
FIELDS - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
FIELDS - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
FIELDS - Static variable in class ome.model.annotations.PlateAnnotationLink
FIELDS - Static variable in class ome.model.annotations.ProjectAnnotationLink
FIELDS - Static variable in class ome.model.annotations.ReagentAnnotationLink
FIELDS - Static variable in class ome.model.annotations.RoiAnnotationLink
FIELDS - Static variable in class ome.model.annotations.ScreenAnnotationLink
FIELDS - Static variable in class ome.model.annotations.SessionAnnotationLink
FIELDS - Static variable in class ome.model.annotations.ShapeAnnotationLink
FIELDS - Static variable in class ome.model.annotations.TagAnnotation
FIELDS - Static variable in class ome.model.annotations.TermAnnotation
FIELDS - Static variable in class ome.model.annotations.TextAnnotation
FIELDS - Static variable in class ome.model.annotations.TimestampAnnotation
FIELDS - Static variable in class ome.model.annotations.TypeAnnotation
FIELDS - Static variable in class ome.model.annotations.WellAnnotationLink
FIELDS - Static variable in class ome.model.annotations.XmlAnnotation
FIELDS - Static variable in class ome.model.containers.Dataset
FIELDS - Static variable in class ome.model.containers.DatasetImageLink
FIELDS - Static variable in class ome.model.containers.Folder
FIELDS - Static variable in class ome.model.containers.FolderImageLink
FIELDS - Static variable in class ome.model.containers.FolderRoiLink
FIELDS - Static variable in class ome.model.containers.Project
FIELDS - Static variable in class ome.model.containers.ProjectDatasetLink
FIELDS - Static variable in class ome.model.core.Channel
FIELDS - Static variable in class ome.model.core.Image
FIELDS - Static variable in class ome.model.core.LogicalChannel
FIELDS - Static variable in class ome.model.core.OriginalFile
FIELDS - Static variable in class ome.model.core.Pixels
FIELDS - Static variable in class ome.model.core.PixelsOriginalFileMap
FIELDS - Static variable in class ome.model.core.PlaneInfo
FIELDS - Static variable in class ome.model.display.ChannelBinding
FIELDS - Static variable in class ome.model.display.CodomainMapContext
FIELDS - Static variable in class ome.model.display.ContrastStretchingContext
FIELDS - Static variable in class ome.model.display.PlaneSlicingContext
FIELDS - Static variable in class ome.model.display.ProjectionDef
FIELDS - Static variable in class ome.model.display.QuantumDef
FIELDS - Static variable in class ome.model.display.RenderingDef
FIELDS - Static variable in class ome.model.display.ReverseIntensityContext
FIELDS - Static variable in class ome.model.display.Thumbnail
FIELDS - Static variable in class ome.model.enums.AcquisitionMode
FIELDS - Static variable in class ome.model.enums.AdminPrivilege
FIELDS - Static variable in class ome.model.enums.ArcType
FIELDS - Static variable in class ome.model.enums.Binning
FIELDS - Static variable in class ome.model.enums.ChecksumAlgorithm
FIELDS - Static variable in class ome.model.enums.ContrastMethod
FIELDS - Static variable in class ome.model.enums.Correction
FIELDS - Static variable in class ome.model.enums.DetectorType
FIELDS - Static variable in class ome.model.enums.DimensionOrder
FIELDS - Static variable in class ome.model.enums.EventType
FIELDS - Static variable in class ome.model.enums.ExperimentType
FIELDS - Static variable in class ome.model.enums.Family
FIELDS - Static variable in class ome.model.enums.FilamentType
FIELDS - Static variable in class ome.model.enums.FilterType
FIELDS - Static variable in class ome.model.enums.Format
FIELDS - Static variable in class ome.model.enums.Illumination
FIELDS - Static variable in class ome.model.enums.Immersion
FIELDS - Static variable in class ome.model.enums.LaserMedium
FIELDS - Static variable in class ome.model.enums.LaserType
FIELDS - Static variable in class ome.model.enums.Medium
FIELDS - Static variable in class ome.model.enums.MicrobeamManipulationType
FIELDS - Static variable in class ome.model.enums.MicroscopeType
FIELDS - Static variable in class ome.model.enums.PhotometricInterpretation
FIELDS - Static variable in class ome.model.enums.PixelsType
FIELDS - Static variable in class ome.model.enums.ProjectionAxis
FIELDS - Static variable in class ome.model.enums.ProjectionType
FIELDS - Static variable in class ome.model.enums.Pulse
FIELDS - Static variable in class ome.model.enums.RenderingModel
FIELDS - Static variable in class ome.model.experiment.Experiment
FIELDS - Static variable in class ome.model.experiment.MicrobeamManipulation
FIELDS - Static variable in class ome.model.fs.Fileset
FIELDS - Static variable in class ome.model.fs.FilesetEntry
FIELDS - Static variable in class ome.model.fs.FilesetJobLink
FIELDS - Static variable in class ome.model.internal.Link
FIELDS - Static variable in class ome.model.jobs.ImportJob: Deprecated.
FIELDS - Static variable in class ome.model.jobs.IndexingJob
FIELDS - Static variable in class ome.model.jobs.IntegrityCheckJob
FIELDS - Static variable in class ome.model.jobs.Job
FIELDS - Static variable in class ome.model.jobs.JobOriginalFileLink
FIELDS - Static variable in class ome.model.jobs.JobStatus
FIELDS - Static variable in class ome.model.jobs.MetadataImportJob
FIELDS - Static variable in class ome.model.jobs.ParseJob
FIELDS - Static variable in class ome.model.jobs.PixelDataJob
FIELDS - Static variable in class ome.model.jobs.ScriptJob
FIELDS - Static variable in class ome.model.jobs.ThumbnailGenerationJob
FIELDS - Static variable in class ome.model.jobs.UploadJob
FIELDS - Static variable in class ome.model.meta.DBPatch
FIELDS - Static variable in class ome.model.meta.Event
FIELDS - Static variable in class ome.model.meta.EventLog
FIELDS - Static variable in class ome.model.meta.Experimenter
FIELDS - Static variable in class ome.model.meta.ExperimenterGroup
FIELDS - Static variable in class ome.model.meta.ExternalInfo
FIELDS - Static variable in class ome.model.meta.GroupExperimenterMap
FIELDS - Static variable in class ome.model.meta.Namespace
FIELDS - Static variable in class ome.model.meta.Node
FIELDS - Static variable in class ome.model.meta.Session
FIELDS - Static variable in class ome.model.meta.Share
FIELDS - Static variable in class ome.model.meta.ShareMember
FIELDS - Static variable in class ome.model.roi.AffineTransform
FIELDS - Static variable in class ome.model.roi.Ellipse
FIELDS - Static variable in class ome.model.roi.Label
FIELDS - Static variable in class ome.model.roi.Line
FIELDS - Static variable in class ome.model.roi.Mask
FIELDS - Static variable in class ome.model.roi.Path: Deprecated.
FIELDS - Static variable in class ome.model.roi.Point
FIELDS - Static variable in class ome.model.roi.Polygon
FIELDS - Static variable in class ome.model.roi.Polyline
FIELDS - Static variable in class ome.model.roi.Rectangle
FIELDS - Static variable in class ome.model.roi.Roi
FIELDS - Static variable in class ome.model.roi.Shape
FIELDS - Static variable in class ome.model.screen.Plate
FIELDS - Static variable in class ome.model.screen.PlateAcquisition
FIELDS - Static variable in class ome.model.screen.Reagent
FIELDS - Static variable in class ome.model.screen.Screen
FIELDS - Static variable in class ome.model.screen.ScreenPlateLink
FIELDS - Static variable in class ome.model.screen.Well
FIELDS - Static variable in class ome.model.screen.WellReagentLink
FIELDS - Static variable in class ome.model.screen.WellSample
FIELDS - Static variable in class ome.model.stats.StatsInfo
Filament - Class in ome.model.acquisition
Filament() - Constructor for class ome.model.acquisition.Filament
Filament(Long) - Constructor for class ome.model.acquisition.Filament
Filament(Long, boolean) - Constructor for class ome.model.acquisition.Filament: Main constructor.
Filament(FilamentType) - Constructor for class ome.model.acquisition.Filament
FilamentType - Class in ome.model.enums
FilamentType() - Constructor for class ome.model.enums.FilamentType
FilamentType(Long) - Constructor for class ome.model.enums.FilamentType
FilamentType(Long, boolean) - Constructor for class ome.model.enums.FilamentType: Main constructor.
FilamentType(String) - Constructor for class ome.model.enums.FilamentType
FilamentType.Details - Class in ome.model.enums
file - Variable in class ome.model.annotations.FileAnnotation
FILE - Static variable in class ome.model.annotations.FileAnnotation
FileAnnotation - Class in ome.model.annotations
FileAnnotation() - Constructor for class ome.model.annotations.FileAnnotation
FileAnnotation(Long) - Constructor for class ome.model.annotations.FileAnnotation
FileAnnotation(Long, boolean) - Constructor for class ome.model.annotations.FileAnnotation: Main constructor.
fileId - Variable in class ome.util.SqlAction.DeleteLog
fileIdsInDb(String, Set<String>) - Method in interface ome.util.SqlAction: Return all IDs matching the given mimetypes, or all IDs if mimetypes is null.
fileIdsInDb(String, Set<String>) - Method in class ome.util.SqlAction.Impl
fileRepo(long) - Method in interface ome.util.SqlAction
fileRepo(long) - Method in class ome.util.SqlAction.Impl
fileset - Variable in class ome.model.core.Image
fileset - Variable in class ome.model.fs.FilesetEntry
Fileset - Class in ome.model.fs: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Fileset() - Constructor for class ome.model.fs.Fileset
Fileset(Long) - Constructor for class ome.model.fs.Fileset
Fileset(Long, boolean) - Constructor for class ome.model.fs.Fileset: Main constructor.
Fileset(String) - Constructor for class ome.model.fs.Fileset
FILESET - Static variable in class ome.model.core.Image
FILESET - Static variable in class ome.model.fs.FilesetEntry
Fileset.Details - Class in ome.model.fs
FilesetAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilesetAnnotationLink() - Constructor for class ome.model.annotations.FilesetAnnotationLink
FilesetAnnotationLink(Long) - Constructor for class ome.model.annotations.FilesetAnnotationLink
FilesetAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FilesetAnnotationLink: Main constructor.
FilesetAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FilesetAnnotationLink
FilesetAnnotationLink.Details - Class in ome.model.annotations
filesetEntries - Variable in class ome.model.core.OriginalFile
FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
FilesetEntry - Class in ome.model.fs: These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilesetEntry() - Constructor for class ome.model.fs.FilesetEntry
FilesetEntry(Long) - Constructor for class ome.model.fs.FilesetEntry
FilesetEntry(Long, boolean) - Constructor for class ome.model.fs.FilesetEntry: Main constructor.
FilesetEntry(Fileset, OriginalFile, String) - Constructor for class ome.model.fs.FilesetEntry
FilesetEntry.Details - Class in ome.model.fs
FilesetJobLink - Class in ome.model.fs: These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilesetJobLink() - Constructor for class ome.model.fs.FilesetJobLink
FilesetJobLink(Long) - Constructor for class ome.model.fs.FilesetJobLink
FilesetJobLink(Long, boolean) - Constructor for class ome.model.fs.FilesetJobLink: Main constructor.
FilesetJobLink(IObject, IObject) - Constructor for class ome.model.fs.FilesetJobLink
FilesetJobLink.Details - Class in ome.model.fs
fillColor - Variable in class ome.model.roi.Shape
FILLCOLOR - Static variable in class ome.model.roi.Shape
fillObject(ReverseModelMapper) - Method in interface ome.model.ModelBased
fillRule - Variable in class ome.model.roi.Shape
FILLRULE - Static variable in class ome.model.roi.Shape
filter - Variable in class ome.model.acquisition.Instrument
filter(String, Object) - Method in class ome.util.ContextFilter: used when type is unknown.
filter(String, Object) - Method in interface ome.util.Filter
filter(String, Object) - Method in class ome.util.RdfPrinter
filter(String, Collection) - Method in class ome.util.ContextFilter: iterates over the contents of the collection and filters each.
filter(String, Collection) - Method in interface ome.util.Filter
filter(String, Collection) - Method in class ome.util.ModelMapper
filter(String, Collection) - Method in class ome.util.RdfPrinter
filter(String, Map) - Method in class ome.util.ContextFilter: filters both the key and value sets of the map.
filter(String, Map) - Method in interface ome.util.Filter
filter(String, Map) - Method in class ome.util.ModelMapper
filter(String, ContextFilter.Entry) - Method in class ome.util.ContextFilter: doesn't return a new entry.
filter(String, Filterable) - Method in class ome.util.ContextFilter
filter(String, Filterable) - Method in interface ome.util.Filter
filter(String, Filterable) - Method in class ome.util.ModelMapper
filter(String, Filterable) - Method in class ome.util.RdfPrinter
Filter - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Filter - Class in ome.parameters: parameter to generally reduce the size of a query result set.
Filter - Interface in ome.util: marks objects which can be filtered using {see FIXME }.
Filter() - Constructor for class ome.model.acquisition.Filter
Filter() - Constructor for class ome.parameters.Filter
Filter(Long) - Constructor for class ome.model.acquisition.Filter
Filter(Long, boolean) - Constructor for class ome.model.acquisition.Filter: Main constructor.
Filter(Instrument) - Constructor for class ome.model.acquisition.Filter
FILTER - Static variable in class ome.model.acquisition.Instrument
Filter.Details - Class in ome.model.acquisition
Filterable - Interface in ome.util: marks objects which can be filtered using {see FIXME }.
FilterAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterAnnotationLink() - Constructor for class ome.model.annotations.FilterAnnotationLink
FilterAnnotationLink(Long) - Constructor for class ome.model.annotations.FilterAnnotationLink
FilterAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FilterAnnotationLink: Main constructor.
FilterAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FilterAnnotationLink
FilterAnnotationLink.Details - Class in ome.model.annotations
FilteredFullAdmin() - Constructor for class ome.util.PrivilegedStringType.FilteredFullAdmin
FilteredFullAdmin() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdmin
FilteredFullAdminHidden() - Constructor for class ome.util.PrivilegedStringType.FilteredFullAdminHidden
FilteredFullAdminHidden() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdminHidden
FilteredFullAdminUUID() - Constructor for class ome.util.PrivilegedStringType.FilteredFullAdminUUID
FilteredFullAdminUUID() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdminUUID
FilteredRelatedUser() - Constructor for class ome.util.PrivilegedStringType.FilteredRelatedUser
FilteredRelatedUser() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredRelatedUser
FilteredRelatedUserHidden() - Constructor for class ome.util.PrivilegedStringType.FilteredRelatedUserHidden
FilteredRelatedUserHidden() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredRelatedUserHidden
filteredSet() - Method in class ome.model.internal.Details: copy of the current collection of filtered names.
filteredSize() - Method in class ome.model.internal.Details: the count of collections which were filtered.
filterFileIdsByRepo(String, List<Long>) - Method in interface ome.util.SqlAction: Find the original file IDs among those given that are in the given repository.
filterFileIdsByRepo(String, List<Long>) - Method in class ome.util.SqlAction.Impl
filterSet - Variable in class ome.model.acquisition.Instrument
filterSet - Variable in class ome.model.acquisition.OTF
filterSet - Variable in class ome.model.core.LogicalChannel
FilterSet - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterSet() - Constructor for class ome.model.acquisition.FilterSet
FilterSet(Long) - Constructor for class ome.model.acquisition.FilterSet
FilterSet(Long, boolean) - Constructor for class ome.model.acquisition.FilterSet: Main constructor.
FilterSet(Instrument) - Constructor for class ome.model.acquisition.FilterSet
FILTERSET - Static variable in class ome.model.acquisition.Instrument
FILTERSET - Static variable in class ome.model.acquisition.OTF
FILTERSET - Static variable in class ome.model.core.LogicalChannel
FilterSet.Details - Class in ome.model.acquisition
FilterSetEmissionFilterLink - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterSetEmissionFilterLink() - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
FilterSetEmissionFilterLink(Long) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
FilterSetEmissionFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink: Main constructor.
FilterSetEmissionFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
FilterSetEmissionFilterLink.Details - Class in ome.model.acquisition
FilterSetExcitationFilterLink - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterSetExcitationFilterLink() - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
FilterSetExcitationFilterLink(Long) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
FilterSetExcitationFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink: Main constructor.
FilterSetExcitationFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
FilterSetExcitationFilterLink.Details - Class in ome.model.acquisition
FilterType - Class in ome.model.enums
FilterType() - Constructor for class ome.model.enums.FilterType
FilterType(Long) - Constructor for class ome.model.enums.FilterType
FilterType(Long, boolean) - Constructor for class ome.model.enums.FilterType: Main constructor.
FilterType(String) - Constructor for class ome.model.enums.FilterType
FilterType.Details - Class in ome.model.enums
filterWheel - Variable in class ome.model.acquisition.Filter
FILTERWHEEL - Static variable in class ome.model.acquisition.Filter
findAnnotationAnnotationLink(Annotation) - Method in class ome.model.annotations.Annotation: find all ome.model.annotations.AnnotationAnnotationLink which have the argument as their child.
findChannelAnnotationLink(Annotation) - Method in class ome.model.core.Channel: find all ome.model.annotations.ChannelAnnotationLink which have the argument as their child.
findClass(Class) - Method in class ome.util.ModelMapper
findCollection(Collection) - Method in class ome.util.ModelMapper
findCollectionTarget(Object) - Method in class ome.util.ModelMapper: extension point which subclasses can override to better map the values of collections and maps.
findDatasetAnnotationLink(Annotation) - Method in class ome.model.containers.Dataset: find all ome.model.annotations.DatasetAnnotationLink which have the argument as their child.
findDatasetImageLink(Dataset) - Method in class ome.model.core.Image: find all ome.model.containers.DatasetImageLink which have the argument as their parent.
findDatasetImageLink(Image) - Method in class ome.model.containers.Dataset: find all ome.model.containers.DatasetImageLink which have the argument as their child.
findDetectorAnnotationLink(Annotation) - Method in class ome.model.acquisition.Detector: find all ome.model.annotations.DetectorAnnotationLink which have the argument as their child.
findDichroicAnnotationLink(Annotation) - Method in class ome.model.acquisition.Dichroic: find all ome.model.annotations.DichroicAnnotationLink which have the argument as their child.
findExperimenterAnnotationLink(Annotation) - Method in class ome.model.meta.Experimenter: find all ome.model.annotations.ExperimenterAnnotationLink which have the argument as their child.
findExperimenterGroupAnnotationLink(Annotation) - Method in class ome.model.meta.ExperimenterGroup: find all ome.model.annotations.ExperimenterGroupAnnotationLink which have the argument as their child.
findFilesetAnnotationLink(Annotation) - Method in class ome.model.fs.Fileset: find all ome.model.annotations.FilesetAnnotationLink which have the argument as their child.
findFilesetJobLink(Job) - Method in class ome.model.fs.Fileset: find all ome.model.fs.FilesetJobLink which have the argument as their child.
findFilterAnnotationLink(Annotation) - Method in class ome.model.acquisition.Filter: find all ome.model.annotations.FilterAnnotationLink which have the argument as their child.
findFilterSetEmissionFilterLink(Filter) - Method in class ome.model.acquisition.FilterSet: find all ome.model.acquisition.FilterSetEmissionFilterLink which have the argument as their child.
findFilterSetEmissionFilterLink(FilterSet) - Method in class ome.model.acquisition.Filter: find all ome.model.acquisition.FilterSetEmissionFilterLink which have the argument as their parent.
findFilterSetExcitationFilterLink(Filter) - Method in class ome.model.acquisition.FilterSet: find all ome.model.acquisition.FilterSetExcitationFilterLink which have the argument as their child.
findFilterSetExcitationFilterLink(FilterSet) - Method in class ome.model.acquisition.Filter: find all ome.model.acquisition.FilterSetExcitationFilterLink which have the argument as their parent.
findFolderAnnotationLink(Annotation) - Method in class ome.model.containers.Folder: find all ome.model.annotations.FolderAnnotationLink which have the argument as their child.
findFolderImageLink(Folder) - Method in class ome.model.core.Image: find all ome.model.containers.FolderImageLink which have the argument as their parent.
findFolderImageLink(Image) - Method in class ome.model.containers.Folder: find all ome.model.containers.FolderImageLink which have the argument as their child.
findFolderRoiLink(Folder) - Method in class ome.model.roi.Roi: find all ome.model.containers.FolderRoiLink which have the argument as their parent.
findFolderRoiLink(Roi) - Method in class ome.model.containers.Folder: find all ome.model.containers.FolderRoiLink which have the argument as their child.
findGroupExperimenterMap(Experimenter) - Method in class ome.model.meta.ExperimenterGroup: find all ome.model.meta.GroupExperimenterMap which have the argument as their child.
findGroupExperimenterMap(ExperimenterGroup) - Method in class ome.model.meta.Experimenter: find all ome.model.meta.GroupExperimenterMap which have the argument as their parent.
findImageAnnotationLink(Annotation) - Method in class ome.model.core.Image: find all ome.model.annotations.ImageAnnotationLink which have the argument as their child.
findInstrumentAnnotationLink(Annotation) - Method in class ome.model.acquisition.Instrument: find all ome.model.annotations.InstrumentAnnotationLink which have the argument as their child.
findJobOriginalFileLink(OriginalFile) - Method in class ome.model.jobs.Job: find all ome.model.jobs.JobOriginalFileLink which have the argument as their child.
findKeyTarget(Object) - Method in class ome.util.ModelMapper: extension point which subclasses can override to better map the keys of maps.
findLightPathAnnotationLink(Annotation) - Method in class ome.model.acquisition.LightPath: find all ome.model.annotations.LightPathAnnotationLink which have the argument as their child.
findLightPathEmissionFilterLink(Filter) - Method in class ome.model.acquisition.LightPath: find all ome.model.acquisition.LightPathEmissionFilterLink which have the argument as their child.
findLightPathExcitationFilterLink(Filter) - Method in class ome.model.acquisition.LightPath: find all ome.model.acquisition.LightPathExcitationFilterLink which have the argument as their child.
findLightSourceAnnotationLink(Annotation) - Method in class ome.model.acquisition.LightSource: find all ome.model.annotations.LightSourceAnnotationLink which have the argument as their child.
findMap(Map) - Method in class ome.util.ModelMapper
findNamespaceAnnotationLink(Annotation) - Method in class ome.model.meta.Namespace: find all ome.model.annotations.NamespaceAnnotationLink which have the argument as their child.
findNodeAnnotationLink(Annotation) - Method in class ome.model.meta.Node: find all ome.model.annotations.NodeAnnotationLink which have the argument as their child.
findObjectiveAnnotationLink(Annotation) - Method in class ome.model.acquisition.Objective: find all ome.model.annotations.ObjectiveAnnotationLink which have the argument as their child.
findOldAdminPrivileges() - Method in interface ome.util.SqlAction: Find the completed transactions among the current light administrator privileges.
findOldAdminPrivileges() - Method in class ome.util.SqlAction.Impl
findOriginalFileAnnotationLink(Annotation) - Method in class ome.model.core.OriginalFile: find all ome.model.annotations.OriginalFileAnnotationLink which have the argument as their child.
findPixelsOriginalFileMap(OriginalFile) - Method in class ome.model.core.Pixels: find all ome.model.core.PixelsOriginalFileMap which have the argument as their parent.
findPixelsOriginalFileMap(Pixels) - Method in class ome.model.core.OriginalFile: find all ome.model.core.PixelsOriginalFileMap which have the argument as their child.
findPlaneInfoAnnotationLink(Annotation) - Method in class ome.model.core.PlaneInfo: find all ome.model.annotations.PlaneInfoAnnotationLink which have the argument as their child.
findPlateAcquisitionAnnotationLink(Annotation) - Method in class ome.model.screen.PlateAcquisition: find all ome.model.annotations.PlateAcquisitionAnnotationLink which have the argument as their child.
findPlateAnnotationLink(Annotation) - Method in class ome.model.screen.Plate: find all ome.model.annotations.PlateAnnotationLink which have the argument as their child.
findProjectAnnotationLink(Annotation) - Method in class ome.model.containers.Project: find all ome.model.annotations.ProjectAnnotationLink which have the argument as their child.
findProjectDatasetLink(Dataset) - Method in class ome.model.containers.Project: find all ome.model.containers.ProjectDatasetLink which have the argument as their child.
findProjectDatasetLink(Project) - Method in class ome.model.containers.Dataset: find all ome.model.containers.ProjectDatasetLink which have the argument as their parent.
findReagentAnnotationLink(Annotation) - Method in class ome.model.screen.Reagent: find all ome.model.annotations.ReagentAnnotationLink which have the argument as their child.
findRepoDeleteLogs(SqlAction.DeleteLog) - Method in interface ome.util.SqlAction: Find all SqlAction.DeleteLog entries which match all of the non-null fields provided in the template.
findRepoDeleteLogs(SqlAction.DeleteLog) - Method in class ome.util.SqlAction.Impl
findRepoFile(String, String, String) - Method in interface ome.util.SqlAction: Calls SqlAction.findRepoFile(String, String, String, Set) passing null.
findRepoFile(String, String, String) - Method in class ome.util.SqlAction.Impl
findRepoFile(String, String, String, String) - Method in interface ome.util.SqlAction: Calls SqlAction.findRepoFile(String, String, String, Set)
findRepoFile(String, String, String, String) - Method in class ome.util.SqlAction.Impl
findRepoFile(String, String, String, Set<String>) - Method in interface ome.util.SqlAction: Lookup the id of an OriginalFile in a given repository or return null if none is found.
findRepoFile(String, String, String, Set<String>) - Method in class ome.util.SqlAction.Impl
findRepoFilePath(String, long) - Method in interface ome.util.SqlAction
findRepoFilePath(String, long) - Method in class ome.util.SqlAction.Impl
findRepoFiles(String, String) - Method in interface ome.util.SqlAction: Return a list of original file ids that all have a path value matching the passed dirname in the given repository.
findRepoFiles(String, String) - Method in class ome.util.SqlAction.Impl
findRepoFiles(String, String, List<String>, Set<String>) - Method in interface ome.util.SqlAction: Like SqlAction.findRepoFile(String, String, String, Set), but queries in bulk and returns a map for the found IDs.
findRepoFiles(String, String, List<String>, Set<String>) - Method in class ome.util.SqlAction.Impl
findRepoImageFromPixels(long) - Method in class ome.util.actions.PostgresSqlAction
findRepoImageFromPixels(long) - Method in interface ome.util.SqlAction
findRepoPixels(String, String, String) - Method in class ome.util.actions.PostgresSqlAction
findRepoPixels(String, String, String) - Method in interface ome.util.SqlAction
findRepoRootPath(String) - Method in interface ome.util.SqlAction: Find the path of the repository root.
findRepoRootPath(String) - Method in class ome.util.SqlAction.Impl
findRoiAnnotationLink(Annotation) - Method in class ome.model.roi.Roi: find all ome.model.annotations.RoiAnnotationLink which have the argument as their child.
findScreenAnnotationLink(Annotation) - Method in class ome.model.screen.Screen: find all ome.model.annotations.ScreenAnnotationLink which have the argument as their child.
findScreenPlateLink(Plate) - Method in class ome.model.screen.Screen: find all ome.model.screen.ScreenPlateLink which have the argument as their child.
findScreenPlateLink(Screen) - Method in class ome.model.screen.Plate: find all ome.model.screen.ScreenPlateLink which have the argument as their parent.
findSessionAnnotationLink(Annotation) - Method in class ome.model.meta.Session: find all ome.model.annotations.SessionAnnotationLink which have the argument as their child.
findShapeAnnotationLink(Annotation) - Method in class ome.model.roi.Shape: find all ome.model.annotations.ShapeAnnotationLink which have the argument as their child.
findTarget(Object) - Method in class ome.util.ModelMapper: known immutables are return unchanged.
findWellAnnotationLink(Annotation) - Method in class ome.model.screen.Well: find all ome.model.annotations.WellAnnotationLink which have the argument as their child.
findWellReagentLink(Reagent) - Method in class ome.model.screen.Well: find all ome.model.screen.WellReagentLink which have the argument as their child.
findWellReagentLink(Well) - Method in class ome.model.screen.Reagent: find all ome.model.screen.WellReagentLink which have the argument as their parent.
finished - Variable in class ome.model.jobs.Job
finished - Variable in class ome.model.meta.DBPatch
FINISHED - Static variable in class ome.model.jobs.Job
FINISHED - Static variable in class ome.model.meta.DBPatch
firstName - Variable in class ome.model.meta.Experimenter
FIRSTNAME - Static variable in class ome.model.meta.Experimenter
FLOAT - Static variable in class ome.util.PixelData: Identifies the type used to store pixel values.
fluor - Variable in class ome.model.core.LogicalChannel
FLUOR - Static variable in class ome.model.core.LogicalChannel
Folder - Class in ome.model.containers: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Folder() - Constructor for class ome.model.containers.Folder
Folder(Long) - Constructor for class ome.model.containers.Folder
Folder(Long, boolean) - Constructor for class ome.model.containers.Folder: Main constructor.
Folder(String) - Constructor for class ome.model.containers.Folder
Folder.Details - Class in ome.model.containers
FolderAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
FolderAnnotationLink() - Constructor for class ome.model.annotations.FolderAnnotationLink
FolderAnnotationLink(Long) - Constructor for class ome.model.annotations.FolderAnnotationLink
FolderAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FolderAnnotationLink: Main constructor.
FolderAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FolderAnnotationLink
FolderAnnotationLink.Details - Class in ome.model.annotations
FolderImageLink - Class in ome.model.containers: These filter definitions are used by the security system to eliminate non-readable objects from queries.
FolderImageLink() - Constructor for class ome.model.containers.FolderImageLink
FolderImageLink(Long) - Constructor for class ome.model.containers.FolderImageLink
FolderImageLink(Long, boolean) - Constructor for class ome.model.containers.FolderImageLink: Main constructor.
FolderImageLink(IObject, IObject) - Constructor for class ome.model.containers.FolderImageLink
FolderImageLink.Details - Class in ome.model.containers
folderLinks - Variable in class ome.model.core.Image
folderLinks - Variable in class ome.model.roi.Roi
FOLDERLINKS - Static variable in class ome.model.core.Image
FOLDERLINKS - Static variable in class ome.model.roi.Roi
FOLDERLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
FOLDERLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Roi
FolderRoiLink - Class in ome.model.containers: These filter definitions are used by the security system to eliminate non-readable objects from queries.
FolderRoiLink() - Constructor for class ome.model.containers.FolderRoiLink
FolderRoiLink(Long) - Constructor for class ome.model.containers.FolderRoiLink
FolderRoiLink(Long, boolean) - Constructor for class ome.model.containers.FolderRoiLink: Main constructor.
FolderRoiLink(IObject, IObject) - Constructor for class ome.model.containers.FolderRoiLink
FolderRoiLink.Details - Class in ome.model.containers
fontFamily - Variable in class ome.model.roi.Shape
FONTFAMILY - Static variable in class ome.model.roi.Shape
fontSize - Variable in class ome.model.roi.Shape
FONTSIZE - Static variable in class ome.model.roi.Shape
fontStyle - Variable in class ome.model.roi.Shape
FONTSTYLE - Static variable in class ome.model.roi.Shape
FOOT - ome.model.enums.UnitsLength
format - Variable in class ome.model.core.Image
Format - Class in ome.model.enums
Format() - Constructor for class ome.model.enums.Format
Format(Long) - Constructor for class ome.model.enums.Format
Format(Long, boolean) - Constructor for class ome.model.enums.Format: Main constructor.
Format(String) - Constructor for class ome.model.enums.Format
FORMAT - Static variable in class ome.model.core.Image
Format.Details - Class in ome.model.enums
Frequency - Class in ome.model.units: class storing both a Frequency and a unit for that Frequency (e.g.
Frequency() - Constructor for class ome.model.units.Frequency: Deprecated.
Frequency(double, String) - Constructor for class ome.model.units.Frequency
Frequency(double, UnitsFrequency) - Constructor for class ome.model.units.Frequency
Frequency(double, Unit<Frequency>) - Constructor for class ome.model.units.Frequency
Frequency(Frequency) - Constructor for class ome.model.units.Frequency
FREQUENCY - ome.model.units.UNITS
frequencyMultiplication - Variable in class ome.model.acquisition.Laser
FREQUENCYMULTIPLICATION - Static variable in class ome.model.acquisition.Laser
fromdbvalue(String) - Method in enum ome.model.units.UNITS: Perform the reverse lookup from UNITS.todbvalue(Object) converting the DB's enums which contain invalid characters to the upper-cased CODE-based enums used elsewhere.
FULL_ADMIN - ome.util.PrivilegedStringTypeDescriptor.Filter
FULL_ADMIN_HIDDEN - ome.util.PrivilegedStringTypeDescriptor.Filter
FULL_ADMIN_UUID - ome.util.PrivilegedStringTypeDescriptor.Filter

G

gain - Variable in class ome.model.acquisition.Detector
gain - Variable in class ome.model.acquisition.DetectorSettings
GAIN - Static variable in class ome.model.acquisition.Detector
GAIN - Static variable in class ome.model.acquisition.DetectorSettings
generate(SessionImplementor, Object) - Method in class ome.util.TableIdGenerator
GenericEnumType<E extends java.lang.Enum<E>> - Class in ome.model.units: http://octagen.at/2014/10/postgresql-custom-data-types-enum-in-hibernate/
GenericEnumType() - Constructor for class ome.model.units.GenericEnumType
GenericExcitationSource - Class in ome.model.acquisition
GenericExcitationSource() - Constructor for class ome.model.acquisition.GenericExcitationSource
GenericExcitationSource(Long) - Constructor for class ome.model.acquisition.GenericExcitationSource
GenericExcitationSource(Long, boolean) - Constructor for class ome.model.acquisition.GenericExcitationSource: Main constructor.
get(String) - Method in class ome.parameters.Parameters: lookup a QueryParameter by name.
getA00() - Method in class ome.model.roi.AffineTransform: Simple field ome.model.roi.AffineTransform.a00 (java.lang.Double)
getA01() - Method in class ome.model.roi.AffineTransform: Simple field ome.model.roi.AffineTransform.a01 (java.lang.Double)
getA02() - Method in class ome.model.roi.AffineTransform: Simple field ome.model.roi.AffineTransform.a02 (java.lang.Double)
getA10() - Method in class ome.model.roi.AffineTransform: Simple field ome.model.roi.AffineTransform.a10 (java.lang.Double)
getA11() - Method in class ome.model.roi.AffineTransform: Simple field ome.model.roi.AffineTransform.a11 (java.lang.Double)
getA12() - Method in class ome.model.roi.AffineTransform: Simple field ome.model.roi.AffineTransform.a12 (java.lang.Double)
getAcquisitionDate() - Method in class ome.model.core.Image: Simple field ome.model.core.Image.acquisitionDate (java.sql.Timestamp)
getAction() - Method in class ome.model.meta.EventLog: Simple field ome.model.meta.EventLog.action (java.lang.String)
getActive() - Method in class ome.model.display.ChannelBinding: Simple field ome.model.display.ChannelBinding.active (java.lang.Boolean)
getActive() - Method in class ome.model.display.ProjectionDef: Simple field ome.model.display.ProjectionDef.active (java.lang.Boolean)
getActive() - Method in class ome.model.meta.Share: Simple field ome.model.meta.Share.active (java.lang.Boolean)
getAirPressure() - Method in class ome.model.acquisition.ImagingEnvironment: Enum-mapped unit-based field ome.model.acquisition.ImagingEnvironment.airPressure (ome.model.units.Pressure)
getAlpha() - Method in class ome.model.core.Channel: Simple field ome.model.core.Channel.alpha (java.lang.Integer)
getAlpha() - Method in class ome.model.display.ChannelBinding: Simple field ome.model.display.ChannelBinding.alpha (java.lang.Integer)
getAlpha() - Method in class ome.model.screen.Well: Simple field ome.model.screen.Well.alpha (java.lang.Integer)
getAmplificationGain() - Method in class ome.model.acquisition.Detector: Simple field ome.model.acquisition.Detector.amplificationGain (java.lang.Double)
getAnnotationLinks() - Method in class ome.model.acquisition.Detector: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Dichroic: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Filter: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Instrument: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.LightPath: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.LightSource: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Objective: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.annotations.Annotation: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.containers.Dataset: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.containers.Folder: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.containers.Project: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.Channel: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.Image: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.OriginalFile: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.PlaneInfo: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.fs.Fileset: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Experimenter: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Namespace: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Node: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Session: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.roi.Roi: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.roi.Shape: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Plate: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Reagent: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Screen: returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Well: returns annotationLinks .
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Detector: If fetched, returns the count(*) of ome.model.annotations.DetectorAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Dichroic: If fetched, returns the count(*) of ome.model.annotations.DichroicAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Filter: If fetched, returns the count(*) of ome.model.annotations.FilterAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Instrument: If fetched, returns the count(*) of ome.model.annotations.InstrumentAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.LightPath: If fetched, returns the count(*) of ome.model.annotations.LightPathAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.LightSource: If fetched, returns the count(*) of ome.model.annotations.LightSourceAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Objective: If fetched, returns the count(*) of ome.model.annotations.ObjectiveAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.annotations.Annotation: If fetched, returns the count(*) of ome.model.annotations.AnnotationAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Dataset: If fetched, returns the count(*) of ome.model.annotations.DatasetAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Folder: If fetched, returns the count(*) of ome.model.annotations.FolderAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Project: If fetched, returns the count(*) of ome.model.annotations.ProjectAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.Channel: If fetched, returns the count(*) of ome.model.annotations.ChannelAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.Image: If fetched, returns the count(*) of ome.model.annotations.ImageAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.OriginalFile: If fetched, returns the count(*) of ome.model.annotations.OriginalFileAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.PlaneInfo: If fetched, returns the count(*) of ome.model.annotations.PlaneInfoAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.fs.Fileset: If fetched, returns the count(*) of ome.model.annotations.FilesetAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Experimenter: If fetched, returns the count(*) of ome.model.annotations.ExperimenterAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.ExperimenterGroup: If fetched, returns the count(*) of ome.model.annotations.ExperimenterGroupAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Namespace: If fetched, returns the count(*) of ome.model.annotations.NamespaceAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Node: If fetched, returns the count(*) of ome.model.annotations.NodeAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Session: If fetched, returns the count(*) of ome.model.annotations.SessionAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.roi.Roi: If fetched, returns the count(*) of ome.model.annotations.RoiAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.roi.Shape: If fetched, returns the count(*) of ome.model.annotations.ShapeAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Plate: If fetched, returns the count(*) of ome.model.annotations.PlateAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.PlateAcquisition: If fetched, returns the count(*) of ome.model.annotations.PlateAcquisitionAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Reagent: If fetched, returns the count(*) of ome.model.annotations.ReagentAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Screen: If fetched, returns the count(*) of ome.model.annotations.ScreenAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Well: If fetched, returns the count(*) of ome.model.annotations.WellAnnotationLink that a user has.
getArchived() - Method in class ome.model.core.Image: Simple field ome.model.core.Image.archived (java.lang.Boolean)
getAtime() - Method in class ome.model.core.OriginalFile: Simple field ome.model.core.OriginalFile.atime (java.sql.Timestamp)
getAttenuation() - Method in class ome.model.acquisition.LightSettings: Simple field ome.model.acquisition.LightSettings.attenuation (java.lang.Double)
getAxis() - Method in class ome.model.display.ProjectionDef: Many-to-one field ome.model.display.ProjectionDef.axis (ome.model.enums.ProjectionAxis)
getBinning() - Method in class ome.model.acquisition.DetectorSettings: Many-to-one field ome.model.acquisition.DetectorSettings.binning (ome.model.enums.Binning)
getBitDepth(String) - Static method in class ome.util.PixelData: Retrieves the bit width of a particular PixelsType.
getBitResolution() - Method in class ome.model.display.QuantumDef: Simple field ome.model.display.QuantumDef.bitResolution (java.lang.Integer)
getBitSize() - Method in class ome.model.enums.PixelsType: Simple field ome.model.enums.PixelsType.bitSize (java.lang.Integer)
getBlue() - Method in class ome.model.core.Channel: Simple field ome.model.core.Channel.blue (java.lang.Integer)
getBlue() - Method in class ome.model.display.ChannelBinding: Simple field ome.model.display.ChannelBinding.blue (java.lang.Integer)
getBlue() - Method in class ome.model.screen.Well: Simple field ome.model.screen.Well.blue (java.lang.Integer)
getBoolValue() - Method in class ome.model.annotations.BooleanAnnotation: Simple field ome.model.annotations.BooleanAnnotation.boolValue (java.lang.Boolean)
getBytes() - Method in class ome.model.roi.Mask: Simple field ome.model.roi.Mask.bytes (byte[])
getCalibratedMagnification() - Method in class ome.model.acquisition.Objective: Simple field ome.model.acquisition.Objective.calibratedMagnification (java.lang.Double)
getCdEnd() - Method in class ome.model.display.QuantumDef: Simple field ome.model.display.QuantumDef.cdEnd (java.lang.Integer)
getCdStart() - Method in class ome.model.display.QuantumDef: Simple field ome.model.display.QuantumDef.cdStart (java.lang.Integer)
getChannel(int) - Method in class ome.model.core.Pixels: Gets the ome.model.core.Channel at the given index.
getChannelBinding() - Method in class ome.model.display.CodomainMapContext: Many-to-one field ome.model.display.CodomainMapContext.channelBinding (ome.model.display.ChannelBinding)
getChannelBinding(int) - Method in class ome.model.display.RenderingDef: Gets the ome.model.display.ChannelBinding at the given index.
getChannels() - Method in class ome.model.core.LogicalChannel: returns channels .
getChannels() - Method in class ome.model.core.Pixels: returns channels .
getChild() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink: Many-to-one field ome.model.acquisition.FilterSetEmissionFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink: Many-to-one field ome.model.acquisition.FilterSetExcitationFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.acquisition.LightPathEmissionFilterLink: Many-to-one field ome.model.acquisition.LightPathEmissionFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.acquisition.LightPathExcitationFilterLink: Many-to-one field ome.model.acquisition.LightPathExcitationFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.annotations.AnnotationAnnotationLink: Many-to-one field ome.model.annotations.AnnotationAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ChannelAnnotationLink: Many-to-one field ome.model.annotations.ChannelAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.DatasetAnnotationLink: Many-to-one field ome.model.annotations.DatasetAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.DetectorAnnotationLink: Many-to-one field ome.model.annotations.DetectorAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.DichroicAnnotationLink: Many-to-one field ome.model.annotations.DichroicAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ExperimenterAnnotationLink: Many-to-one field ome.model.annotations.ExperimenterAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink: Many-to-one field ome.model.annotations.ExperimenterGroupAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.FilesetAnnotationLink: Many-to-one field ome.model.annotations.FilesetAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.FilterAnnotationLink: Many-to-one field ome.model.annotations.FilterAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.FolderAnnotationLink: Many-to-one field ome.model.annotations.FolderAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ImageAnnotationLink: Many-to-one field ome.model.annotations.ImageAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.InstrumentAnnotationLink: Many-to-one field ome.model.annotations.InstrumentAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.LightPathAnnotationLink: Many-to-one field ome.model.annotations.LightPathAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.LightSourceAnnotationLink: Many-to-one field ome.model.annotations.LightSourceAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.NamespaceAnnotationLink: Many-to-one field ome.model.annotations.NamespaceAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.NodeAnnotationLink: Many-to-one field ome.model.annotations.NodeAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ObjectiveAnnotationLink: Many-to-one field ome.model.annotations.ObjectiveAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.OriginalFileAnnotationLink: Many-to-one field ome.model.annotations.OriginalFileAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.PlaneInfoAnnotationLink: Many-to-one field ome.model.annotations.PlaneInfoAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink: Many-to-one field ome.model.annotations.PlateAcquisitionAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.PlateAnnotationLink: Many-to-one field ome.model.annotations.PlateAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ProjectAnnotationLink: Many-to-one field ome.model.annotations.ProjectAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ReagentAnnotationLink: Many-to-one field ome.model.annotations.ReagentAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.RoiAnnotationLink: Many-to-one field ome.model.annotations.RoiAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ScreenAnnotationLink: Many-to-one field ome.model.annotations.ScreenAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.SessionAnnotationLink: Many-to-one field ome.model.annotations.SessionAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ShapeAnnotationLink: Many-to-one field ome.model.annotations.ShapeAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.WellAnnotationLink: Many-to-one field ome.model.annotations.WellAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.containers.DatasetImageLink: Many-to-one field ome.model.containers.DatasetImageLink.child (ome.model.core.Image)
getChild() - Method in class ome.model.containers.FolderImageLink: Many-to-one field ome.model.containers.FolderImageLink.child (ome.model.core.Image)
getChild() - Method in class ome.model.containers.FolderRoiLink: Many-to-one field ome.model.containers.FolderRoiLink.child (ome.model.roi.Roi)
getChild() - Method in class ome.model.containers.ProjectDatasetLink: Many-to-one field ome.model.containers.ProjectDatasetLink.child (ome.model.containers.Dataset)
getChild() - Method in class ome.model.core.PixelsOriginalFileMap: Many-to-one field ome.model.core.PixelsOriginalFileMap.child (ome.model.core.Pixels)
getChild() - Method in class ome.model.fs.FilesetJobLink: Many-to-one field ome.model.fs.FilesetJobLink.child (ome.model.jobs.Job)
getChild() - Method in interface ome.model.ILink
getChild() - Method in class ome.model.jobs.JobOriginalFileLink: Many-to-one field ome.model.jobs.JobOriginalFileLink.child (ome.model.core.OriginalFile)
getChild() - Method in class ome.model.meta.GroupExperimenterMap: Many-to-one field ome.model.meta.GroupExperimenterMap.child (ome.model.meta.Experimenter)
getChild() - Method in class ome.model.meta.ShareMember: Many-to-one field ome.model.meta.ShareMember.child (ome.model.meta.Experimenter)
getChild() - Method in class ome.model.screen.ScreenPlateLink: Many-to-one field ome.model.screen.ScreenPlateLink.child (ome.model.screen.Plate)
getChild() - Method in class ome.model.screen.WellReagentLink: Many-to-one field ome.model.screen.WellReagentLink.child (ome.model.screen.Reagent)
getChildFolders() - Method in class ome.model.containers.Folder: returns childFolders .
getClientPath() - Method in class ome.model.fs.FilesetEntry: Simple field ome.model.fs.FilesetEntry.clientPath (java.lang.String)
getClosed() - Method in class ome.model.meta.Session: Simple field ome.model.meta.Session.closed (java.sql.Timestamp)
getCo2percent() - Method in class ome.model.acquisition.ImagingEnvironment: Simple field ome.model.acquisition.ImagingEnvironment.co2percent (java.lang.Double)
getCodomainMapContext(int) - Method in class ome.model.display.ChannelBinding: Gets the ome.model.display.CodomainMapContext at the given index.
getCoefficient() - Method in class ome.model.display.ChannelBinding: Simple field ome.model.display.ChannelBinding.coefficient (java.lang.Double)
getColumn() - Method in class ome.model.screen.Well: Simple field ome.model.screen.Well.column (java.lang.Integer)
getColumnNamingConvention() - Method in class ome.model.screen.Plate: Simple field ome.model.screen.Plate.columnNamingConvention (java.lang.String)
getColumns() - Method in class ome.model.screen.Plate: Simple field ome.model.screen.Plate.columns (java.lang.Integer)
getCompression() - Method in class ome.model.display.RenderingDef: Simple field ome.model.display.RenderingDef.compression (java.lang.Double)
getConfig() - Method in class ome.model.meta.Experimenter
getConfig() - Method in class ome.model.meta.ExperimenterGroup
getConn() - Method in class ome.model.meta.Node: Simple field ome.model.meta.Node.conn (java.lang.String)
getConstant() - Method in class ome.model.display.PlaneSlicingContext: Simple field ome.model.display.PlaneSlicingContext.constant (java.lang.Boolean)
getContainingEvent() - Method in class ome.model.meta.Event: Many-to-one field ome.model.meta.Event.containingEvent (ome.model.meta.Event)
getContext() - Method in class ome.model.internal.Details: reference to the entity which this Details is contained in.
getContrastMethod() - Method in class ome.model.core.LogicalChannel: Many-to-one field ome.model.core.LogicalChannel.contrastMethod (ome.model.enums.ContrastMethod)
getCorrection() - Method in class ome.model.acquisition.Objective: Many-to-one field ome.model.acquisition.Objective.correction (ome.model.enums.Correction)
getCorrectionCollar() - Method in class ome.model.acquisition.ObjectiveSettings: Simple field ome.model.acquisition.ObjectiveSettings.correctionCollar (java.lang.Double)
getCreationEvent() - Method in class ome.model.acquisition.Detector.Details
getCreationEvent() - Method in class ome.model.acquisition.DetectorSettings.Details
getCreationEvent() - Method in class ome.model.acquisition.Dichroic.Details
getCreationEvent() - Method in class ome.model.acquisition.Filter.Details
getCreationEvent() - Method in class ome.model.acquisition.FilterSet.Details
getCreationEvent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
getCreationEvent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
getCreationEvent() - Method in class ome.model.acquisition.ImagingEnvironment.Details
getCreationEvent() - Method in class ome.model.acquisition.Instrument.Details
getCreationEvent() - Method in class ome.model.acquisition.LightPath.Details
getCreationEvent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
getCreationEvent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
getCreationEvent() - Method in class ome.model.acquisition.LightSettings.Details
getCreationEvent() - Method in class ome.model.acquisition.LightSource.Details
getCreationEvent() - Method in class ome.model.acquisition.Microscope.Details
getCreationEvent() - Method in class ome.model.acquisition.Objective.Details
getCreationEvent() - Method in class ome.model.acquisition.ObjectiveSettings.Details
getCreationEvent() - Method in class ome.model.acquisition.OTF.Details
getCreationEvent() - Method in class ome.model.acquisition.StageLabel.Details
getCreationEvent() - Method in class ome.model.acquisition.TransmittanceRange.Details
getCreationEvent() - Method in class ome.model.annotations.Annotation.Details
getCreationEvent() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.FilterAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.FolderAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.ImageAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.NodeAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.PlateAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.RoiAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.SessionAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
getCreationEvent() - Method in class ome.model.annotations.WellAnnotationLink.Details
getCreationEvent() - Method in class ome.model.containers.Dataset.Details
getCreationEvent() - Method in class ome.model.containers.DatasetImageLink.Details
getCreationEvent() - Method in class ome.model.containers.Folder.Details
getCreationEvent() - Method in class ome.model.containers.FolderImageLink.Details
getCreationEvent() - Method in class ome.model.containers.FolderRoiLink.Details
getCreationEvent() - Method in class ome.model.containers.Project.Details
getCreationEvent() - Method in class ome.model.containers.ProjectDatasetLink.Details
getCreationEvent() - Method in class ome.model.core.Channel.Details
getCreationEvent() - Method in class ome.model.core.Image.Details
getCreationEvent() - Method in class ome.model.core.LogicalChannel.Details
getCreationEvent() - Method in class ome.model.core.OriginalFile.Details
getCreationEvent() - Method in class ome.model.core.Pixels.Details
getCreationEvent() - Method in class ome.model.core.PixelsOriginalFileMap.Details
getCreationEvent() - Method in class ome.model.core.PlaneInfo.Details
getCreationEvent() - Method in class ome.model.display.ChannelBinding.Details
getCreationEvent() - Method in class ome.model.display.CodomainMapContext.Details
getCreationEvent() - Method in class ome.model.display.ProjectionDef.Details
getCreationEvent() - Method in class ome.model.display.QuantumDef.Details
getCreationEvent() - Method in class ome.model.display.RenderingDef.Details
getCreationEvent() - Method in class ome.model.display.Thumbnail.Details
getCreationEvent() - Method in class ome.model.experiment.Experiment.Details
getCreationEvent() - Method in class ome.model.experiment.MicrobeamManipulation.Details
getCreationEvent() - Method in class ome.model.fs.Fileset.Details
getCreationEvent() - Method in class ome.model.fs.FilesetEntry.Details
getCreationEvent() - Method in class ome.model.fs.FilesetJobLink.Details
getCreationEvent() - Method in interface ome.model.IDetails
getCreationEvent() - Method in class ome.model.internal.Details
getCreationEvent() - Method in class ome.model.internal.Link.Details
getCreationEvent() - Method in class ome.model.jobs.Job.Details
getCreationEvent() - Method in class ome.model.jobs.JobOriginalFileLink.Details
getCreationEvent() - Method in class ome.model.meta.ExternalInfo.Details
getCreationEvent() - Method in class ome.model.roi.AffineTransform.Details
getCreationEvent() - Method in class ome.model.roi.Roi.Details
getCreationEvent() - Method in class ome.model.roi.Shape.Details
getCreationEvent() - Method in class ome.model.screen.Plate.Details
getCreationEvent() - Method in class ome.model.screen.PlateAcquisition.Details
getCreationEvent() - Method in class ome.model.screen.Reagent.Details
getCreationEvent() - Method in class ome.model.screen.Screen.Details
getCreationEvent() - Method in class ome.model.screen.ScreenPlateLink.Details
getCreationEvent() - Method in class ome.model.screen.Well.Details
getCreationEvent() - Method in class ome.model.screen.WellReagentLink.Details
getCreationEvent() - Method in class ome.model.screen.WellSample.Details
getCreationEvent() - Method in class ome.model.stats.StatsInfo.Details
getCtime() - Method in class ome.model.core.OriginalFile: Simple field ome.model.core.OriginalFile.ctime (java.sql.Timestamp)
getCurrentPatch() - Method in class ome.model.meta.DBPatch: Simple field ome.model.meta.DBPatch.currentPatch (java.lang.Integer)
getCurrentVersion() - Method in class ome.model.meta.DBPatch: Simple field ome.model.meta.DBPatch.currentVersion (java.lang.String)
getCutIn() - Method in class ome.model.acquisition.TransmittanceRange: Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutIn (ome.model.units.Length)
getCutInTolerance() - Method in class ome.model.acquisition.TransmittanceRange: Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutInTolerance (ome.model.units.Length)
getCutOut() - Method in class ome.model.acquisition.TransmittanceRange: Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutOut (ome.model.units.Length)
getCutOutTolerance() - Method in class ome.model.acquisition.TransmittanceRange: Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutOutTolerance (ome.model.units.Length)
getD() - Method in class ome.model.roi.Path: Deprecated.

Simple field ome.model.roi.Path.d (java.lang.String)
getData() - Method in class ome.model.meta.Share: Simple field ome.model.meta.Share.data (byte[])
getData() - Method in class ome.util.PixelData: Returns the backing buffer for the pixel data.
getDatasetLinks() - Method in class ome.model.containers.Project: returns datasetLinks .
getDatasetLinks() - Method in class ome.model.core.Image: returns datasetLinks .
getDatasetLinksCountPerOwner() - Method in class ome.model.containers.Project: If fetched, returns the count(*) of ome.model.containers.ProjectDatasetLink that a user has.
getDatasetLinksCountPerOwner() - Method in class ome.model.core.Image: If fetched, returns the count(*) of ome.model.containers.DatasetImageLink that a user has.
getDefaultEventType() - Method in class ome.model.meta.Session: Simple field ome.model.meta.Session.defaultEventType (java.lang.String)
getDefaultSample() - Method in class ome.model.screen.Plate: Simple field ome.model.screen.Plate.defaultSample (java.lang.Integer)
getDefaultT() - Method in class ome.model.display.RenderingDef: Simple field ome.model.display.RenderingDef.defaultT (java.lang.Integer)
getDefaultZ() - Method in class ome.model.display.RenderingDef: Simple field ome.model.display.RenderingDef.defaultZ (java.lang.Integer)
getDeletedIds(String) - Method in class ome.util.actions.PostgresSqlAction
getDeletedIds(String) - Method in interface ome.util.SqlAction
getDeltaT() - Method in class ome.model.core.PlaneInfo: Enum-mapped unit-based field ome.model.core.PlaneInfo.deltaT (ome.model.units.Time)
getDescription() - Method in class ome.model.annotations.Annotation: Simple field ome.model.annotations.Annotation.description (java.lang.String)
getDescription() - Method in class ome.model.containers.Dataset: Simple field ome.model.containers.Dataset.description (java.lang.String)
getDescription() - Method in class ome.model.containers.Folder: Simple field ome.model.containers.Folder.description (java.lang.String)
getDescription() - Method in class ome.model.containers.Project: Simple field ome.model.containers.Project.description (java.lang.String)
getDescription() - Method in class ome.model.core.Image: Simple field ome.model.core.Image.description (java.lang.String)
getDescription() - Method in class ome.model.experiment.Experiment: Simple field ome.model.experiment.Experiment.description (java.lang.String)
getDescription() - Method in class ome.model.experiment.MicrobeamManipulation: Simple field ome.model.experiment.MicrobeamManipulation.description (java.lang.String)
getDescription() - Method in class ome.model.jobs.ScriptJob: Simple field ome.model.jobs.ScriptJob.description (java.lang.String)
getDescription() - Method in class ome.model.meta.ExperimenterGroup: Simple field ome.model.meta.ExperimenterGroup.description (java.lang.String)
getDescription() - Method in class ome.model.meta.Namespace: Simple field ome.model.meta.Namespace.description (java.lang.String)
getDescription() - Method in class ome.model.roi.Roi: Simple field ome.model.roi.Roi.description (java.lang.String)
getDescription() - Method in class ome.model.screen.Plate: Simple field ome.model.screen.Plate.description (java.lang.String)
getDescription() - Method in class ome.model.screen.PlateAcquisition: Simple field ome.model.screen.PlateAcquisition.description (java.lang.String)
getDescription() - Method in class ome.model.screen.Reagent: Simple field ome.model.screen.Reagent.description (java.lang.String)
getDescription() - Method in class ome.model.screen.Screen: Simple field ome.model.screen.Screen.description (java.lang.String)
getDetails() - Method in class ome.model.acquisition.Detector: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.DetectorSettings: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.Dichroic: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.Filter: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.FilterSet: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.ImagingEnvironment: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.Instrument: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.LightPath: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.LightPathEmissionFilterLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.LightPathExcitationFilterLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.LightSettings: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.LightSource: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.Microscope: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.Objective: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.ObjectiveSettings: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.OTF: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.StageLabel: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.TransmittanceRange: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.Annotation: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.AnnotationAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ChannelAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.DatasetAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.DetectorAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.DichroicAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ExperimenterAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.FilesetAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.FilterAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.FolderAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ImageAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.InstrumentAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.LightPathAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.LightSourceAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.NamespaceAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.NodeAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ObjectiveAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.OriginalFileAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.PlaneInfoAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.PlateAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ProjectAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ReagentAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.RoiAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ScreenAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.SessionAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ShapeAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.WellAnnotationLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.Dataset: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.DatasetImageLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.Folder: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.FolderImageLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.FolderRoiLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.Project: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.ProjectDatasetLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.Channel: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.Image: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.LogicalChannel: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.OriginalFile: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.Pixels: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.PixelsOriginalFileMap: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.PlaneInfo: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.ChannelBinding: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.CodomainMapContext: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.ProjectionDef: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.QuantumDef: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.RenderingDef: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.Thumbnail: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.AcquisitionMode: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.AdminPrivilege: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ArcType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Binning: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ChecksumAlgorithm: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ContrastMethod: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Correction: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.DetectorType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.DimensionOrder: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.EventType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ExperimentType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Family: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.FilamentType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.FilterType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Format: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Illumination: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Immersion: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.LaserMedium: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.LaserType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Medium: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.MicrobeamManipulationType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.MicroscopeType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.PhotometricInterpretation: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.PixelsType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ProjectionAxis: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ProjectionType: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Pulse: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.RenderingModel: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.experiment.Experiment: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.experiment.MicrobeamManipulation: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.fs.Fileset: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.fs.FilesetEntry: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.fs.FilesetJobLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.internal.Link: The details of this object correspond to low-level system information.
getDetails() - Method in interface ome.model.IObject: Value (i.e.
getDetails() - Method in class ome.model.jobs.Job: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.jobs.JobOriginalFileLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.jobs.JobStatus: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.DBPatch: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.Event: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.EventLog: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.Experimenter: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.ExperimenterGroup: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.ExternalInfo: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.GroupExperimenterMap: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.Namespace: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.Node: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.Session: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.ShareMember: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.roi.AffineTransform: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.roi.Roi: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.roi.Shape: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.Plate: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.PlateAcquisition: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.Reagent: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.Screen: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.ScreenPlateLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.Well: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.WellReagentLink: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.WellSample: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.stats.StatsInfo: The details of this object correspond to low-level system information.
getDetails() - Method in class ome.util.PermDetails
getDetector() - Method in class ome.model.acquisition.DetectorSettings: Many-to-one field ome.model.acquisition.DetectorSettings.detector (ome.model.acquisition.Detector)
getDetector() - Method in class ome.model.acquisition.Instrument: returns detector .
getDetectorSettings() - Method in class ome.model.core.LogicalChannel: Many-to-one field ome.model.core.LogicalChannel.detectorSettings (ome.model.acquisition.DetectorSettings)
getDichroic() - Method in class ome.model.acquisition.FilterSet: Many-to-one field ome.model.acquisition.FilterSet.dichroic (ome.model.acquisition.Dichroic)
getDichroic() - Method in class ome.model.acquisition.Instrument: returns dichroic .
getDichroic() - Method in class ome.model.acquisition.LightPath: Many-to-one field ome.model.acquisition.LightPath.dichroic (ome.model.acquisition.Dichroic)
getDimensionOrder() - Method in class ome.model.core.Pixels: Many-to-one field ome.model.core.Pixels.dimensionOrder (ome.model.enums.DimensionOrder)
getDisplay() - Method in class ome.model.meta.Namespace: Simple field ome.model.meta.Namespace.display (java.lang.Boolean)
getDisplayName() - Method in class ome.model.meta.Namespace: Simple field ome.model.meta.Namespace.displayName (java.lang.String)
getDoubleValue() - Method in class ome.model.annotations.DoubleAnnotation: Simple field ome.model.annotations.DoubleAnnotation.doubleValue (java.lang.Double)
getDown() - Method in class ome.model.meta.Node: Simple field ome.model.meta.Node.down (java.sql.Timestamp)
getEmail() - Method in class ome.model.meta.Experimenter: Simple field ome.model.meta.Experimenter.email (java.lang.String)
getEmissionFilterLink() - Method in class ome.model.acquisition.Filter: returns emissionFilterLink .
getEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet: returns emissionFilterLink .
getEmissionFilterLink() - Method in class ome.model.acquisition.LightPath: returns emissionFilterLink .
getEmissionFilterLinkCountPerOwner() - Method in class ome.model.acquisition.Filter: If fetched, returns the count(*) of ome.model.acquisition.FilterSetEmissionFilterLink that a user has.
getEmissionFilterLinkCountPerOwner() - Method in class ome.model.acquisition.FilterSet: If fetched, returns the count(*) of ome.model.acquisition.FilterSetEmissionFilterLink that a user has.
getEmissionFilterLinkCountPerOwner() - Method in class ome.model.acquisition.LightPath: If fetched, returns the count(*) of ome.model.acquisition.LightPathEmissionFilterLink that a user has.
getEmissionWave() - Method in class ome.model.core.LogicalChannel: Enum-mapped unit-based field ome.model.core.LogicalChannel.emissionWave (ome.model.units.Length)
getEndPlane() - Method in class ome.model.display.ProjectionDef: Simple field ome.model.display.ProjectionDef.endPlane (java.lang.Integer)
getEndTime() - Method in class ome.model.screen.PlateAcquisition: Simple field ome.model.screen.PlateAcquisition.endTime (java.sql.Timestamp)
getEndTime() - Method in class ome.parameters.Parameters
getEntityId() - Method in class ome.model.meta.EventLog: Simple field ome.model.meta.EventLog.entityId (java.lang.Long)
getEntityId() - Method in class ome.model.meta.ExternalInfo: Simple field ome.model.meta.ExternalInfo.entityId (java.lang.Long)
getEntityType() - Method in class ome.model.meta.EventLog: Simple field ome.model.meta.EventLog.entityType (java.lang.String)
getEntityType() - Method in class ome.model.meta.ExternalInfo: Simple field ome.model.meta.ExternalInfo.entityType (java.lang.String)
getEvent() - Method in class ome.model.meta.EventLog: Many-to-one field ome.model.meta.EventLog.event (ome.model.meta.Event)
getEventLogPartitions(Collection<String>, Collection<String>, long, long) - Method in interface ome.util.SqlAction: Loads up to "limit" event logs using partioning so that only the last event log of a particular (type, id) pair is returned.
getEventLogPartitions(Collection<String>, Collection<String>, long, long) - Method in class ome.util.SqlAction.Impl
getEventLogPercent(String) - Method in interface ome.util.SqlAction: Returns the percent (e.g.
getEventLogPercent(String) - Method in class ome.util.SqlAction.Impl
getEvents() - Method in class ome.model.meta.Session: returns events .
getExcitationFilterLink() - Method in class ome.model.acquisition.Filter: returns excitationFilterLink .
getExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet: returns excitationFilterLink .
getExcitationFilterLink() - Method in class ome.model.acquisition.LightPath: returns excitationFilterLink .
getExcitationFilterLinkCountPerOwner() - Method in class ome.model.acquisition.Filter: If fetched, returns the count(*) of ome.model.acquisition.FilterSetExcitationFilterLink that a user has.
getExcitationFilterLinkCountPerOwner() - Method in class ome.model.acquisition.FilterSet: If fetched, returns the count(*) of ome.model.acquisition.FilterSetExcitationFilterLink that a user has.
getExcitationFilterLinkCountPerOwner() - Method in class ome.model.acquisition.LightPath: If fetched, returns the count(*) of ome.model.acquisition.LightPathExcitationFilterLink that a user has.
getExcitationWave() - Method in class ome.model.core.LogicalChannel: Enum-mapped unit-based field ome.model.core.LogicalChannel.excitationWave (ome.model.units.Length)
getExperiment() - Method in class ome.model.core.Image: Many-to-one field ome.model.core.Image.experiment (ome.model.experiment.Experiment)
getExperiment() - Method in class ome.model.experiment.MicrobeamManipulation: Many-to-one field ome.model.experiment.MicrobeamManipulation.experiment (ome.model.experiment.Experiment)
getExperimenter() - Method in class ome.model.meta.Event: Many-to-one field ome.model.meta.Event.experimenter (ome.model.meta.Experimenter)
getExperimenter() - Method in class ome.parameters.Parameters: Fulfills the old PojoOptions requirement for returning null if no owner set.
getExperimenterGroup() - Method in class ome.model.meta.Event: Many-to-one field ome.model.meta.Event.experimenterGroup (ome.model.meta.ExperimenterGroup)
getExposureTime() - Method in class ome.model.core.PlaneInfo: Enum-mapped unit-based field ome.model.core.PlaneInfo.exposureTime (ome.model.units.Time)
getExternalDescription() - Method in class ome.model.screen.Well: Simple field ome.model.screen.Well.externalDescription (java.lang.String)
getExternalIdentifier() - Method in class ome.model.screen.Plate: Simple field ome.model.screen.Plate.externalIdentifier (java.lang.String)
getExternalIdentifier() - Method in class ome.model.screen.Well: Simple field ome.model.screen.Well.externalIdentifier (java.lang.String)
getExternalInfo() - Method in class ome.model.acquisition.Detector.Details
getExternalInfo() - Method in class ome.model.acquisition.DetectorSettings.Details
getExternalInfo() - Method in class ome.model.acquisition.Dichroic.Details
getExternalInfo() - Method in class ome.model.acquisition.Filter.Details
getExternalInfo() - Method in class ome.model.acquisition.FilterSet.Details
getExternalInfo() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
getExternalInfo() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
getExternalInfo() - Method in class ome.model.acquisition.ImagingEnvironment.Details
getExternalInfo() - Method in class ome.model.acquisition.Instrument.Details
getExternalInfo() - Method in class ome.model.acquisition.LightPath.Details
getExternalInfo() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
getExternalInfo() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
getExternalInfo() - Method in class ome.model.acquisition.LightSettings.Details
getExternalInfo() - Method in class ome.model.acquisition.LightSource.Details
getExternalInfo() - Method in class ome.model.acquisition.Microscope.Details
getExternalInfo() - Method in class ome.model.acquisition.Objective.Details
getExternalInfo() - Method in class ome.model.acquisition.ObjectiveSettings.Details
getExternalInfo() - Method in class ome.model.acquisition.OTF.Details
getExternalInfo() - Method in class ome.model.acquisition.StageLabel.Details
getExternalInfo() - Method in class ome.model.acquisition.TransmittanceRange.Details
getExternalInfo() - Method in class ome.model.annotations.Annotation.Details
getExternalInfo() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.FilterAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.FolderAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.ImageAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.NodeAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.PlateAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.RoiAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.SessionAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
getExternalInfo() - Method in class ome.model.annotations.WellAnnotationLink.Details
getExternalInfo() - Method in class ome.model.containers.Dataset.Details
getExternalInfo() - Method in class ome.model.containers.DatasetImageLink.Details
getExternalInfo() - Method in class ome.model.containers.Folder.Details
getExternalInfo() - Method in class ome.model.containers.FolderImageLink.Details
getExternalInfo() - Method in class ome.model.containers.FolderRoiLink.Details
getExternalInfo() - Method in class ome.model.containers.Project.Details
getExternalInfo() - Method in class ome.model.containers.ProjectDatasetLink.Details
getExternalInfo() - Method in class ome.model.core.Channel.Details
getExternalInfo() - Method in class ome.model.core.Image.Details
getExternalInfo() - Method in class ome.model.core.LogicalChannel.Details
getExternalInfo() - Method in class ome.model.core.OriginalFile.Details
getExternalInfo() - Method in class ome.model.core.Pixels.Details
getExternalInfo() - Method in class ome.model.core.PixelsOriginalFileMap.Details
getExternalInfo() - Method in class ome.model.core.PlaneInfo.Details
getExternalInfo() - Method in class ome.model.display.ChannelBinding.Details
getExternalInfo() - Method in class ome.model.display.CodomainMapContext.Details
getExternalInfo() - Method in class ome.model.display.ProjectionDef.Details
getExternalInfo() - Method in class ome.model.display.QuantumDef.Details
getExternalInfo() - Method in class ome.model.display.RenderingDef.Details
getExternalInfo() - Method in class ome.model.display.Thumbnail.Details
getExternalInfo() - Method in class ome.model.enums.AcquisitionMode.Details
getExternalInfo() - Method in class ome.model.enums.AdminPrivilege.Details
getExternalInfo() - Method in class ome.model.enums.ArcType.Details
getExternalInfo() - Method in class ome.model.enums.Binning.Details
getExternalInfo() - Method in class ome.model.enums.ChecksumAlgorithm.Details
getExternalInfo() - Method in class ome.model.enums.ContrastMethod.Details
getExternalInfo() - Method in class ome.model.enums.Correction.Details
getExternalInfo() - Method in class ome.model.enums.DetectorType.Details
getExternalInfo() - Method in class ome.model.enums.DimensionOrder.Details
getExternalInfo() - Method in class ome.model.enums.EventType.Details
getExternalInfo() - Method in class ome.model.enums.ExperimentType.Details
getExternalInfo() - Method in class ome.model.enums.Family.Details
getExternalInfo() - Method in class ome.model.enums.FilamentType.Details
getExternalInfo() - Method in class ome.model.enums.FilterType.Details
getExternalInfo() - Method in class ome.model.enums.Format.Details
getExternalInfo() - Method in class ome.model.enums.Illumination.Details
getExternalInfo() - Method in class ome.model.enums.Immersion.Details
getExternalInfo() - Method in class ome.model.enums.LaserMedium.Details
getExternalInfo() - Method in class ome.model.enums.LaserType.Details
getExternalInfo() - Method in class ome.model.enums.Medium.Details
getExternalInfo() - Method in class ome.model.enums.MicrobeamManipulationType.Details
getExternalInfo() - Method in class ome.model.enums.MicroscopeType.Details
getExternalInfo() - Method in class ome.model.enums.PhotometricInterpretation.Details
getExternalInfo() - Method in class ome.model.enums.PixelsType.Details
getExternalInfo() - Method in class ome.model.enums.ProjectionAxis.Details
getExternalInfo() - Method in class ome.model.enums.ProjectionType.Details
getExternalInfo() - Method in class ome.model.enums.Pulse.Details
getExternalInfo() - Method in class ome.model.enums.RenderingModel.Details
getExternalInfo() - Method in class ome.model.experiment.Experiment.Details
getExternalInfo() - Method in class ome.model.experiment.MicrobeamManipulation.Details
getExternalInfo() - Method in class ome.model.fs.Fileset.Details
getExternalInfo() - Method in class ome.model.fs.FilesetEntry.Details
getExternalInfo() - Method in class ome.model.fs.FilesetJobLink.Details
getExternalInfo() - Method in class ome.model.internal.Details
getExternalInfo() - Method in class ome.model.internal.Link.Details
getExternalInfo() - Method in class ome.model.jobs.Job.Details
getExternalInfo() - Method in class ome.model.jobs.JobOriginalFileLink.Details
getExternalInfo() - Method in class ome.model.jobs.JobStatus.Details
getExternalInfo() - Method in class ome.model.meta.DBPatch.Details
getExternalInfo() - Method in class ome.model.meta.Event.Details
getExternalInfo() - Method in class ome.model.meta.EventLog.Details
getExternalInfo() - Method in class ome.model.meta.Experimenter.Details
getExternalInfo() - Method in class ome.model.meta.ExperimenterGroup.Details
getExternalInfo() - Method in class ome.model.meta.ExternalInfo.Details
getExternalInfo() - Method in class ome.model.meta.GroupExperimenterMap.Details
getExternalInfo() - Method in class ome.model.meta.Namespace.Details
getExternalInfo() - Method in class ome.model.meta.Node.Details
getExternalInfo() - Method in class ome.model.meta.Session.Details
getExternalInfo() - Method in class ome.model.meta.ShareMember.Details
getExternalInfo() - Method in class ome.model.roi.AffineTransform.Details
getExternalInfo() - Method in class ome.model.roi.Roi.Details
getExternalInfo() - Method in class ome.model.roi.Shape.Details
getExternalInfo() - Method in class ome.model.screen.Plate.Details
getExternalInfo() - Method in class ome.model.screen.PlateAcquisition.Details
getExternalInfo() - Method in class ome.model.screen.Reagent.Details
getExternalInfo() - Method in class ome.model.screen.Screen.Details
getExternalInfo() - Method in class ome.model.screen.ScreenPlateLink.Details
getExternalInfo() - Method in class ome.model.screen.Well.Details
getExternalInfo() - Method in class ome.model.screen.WellReagentLink.Details
getExternalInfo() - Method in class ome.model.screen.WellSample.Details
getExternalInfo() - Method in class ome.model.stats.StatsInfo.Details
getFamily() - Method in class ome.model.display.ChannelBinding: Many-to-one field ome.model.display.ChannelBinding.family (ome.model.enums.Family)
getFile() - Method in class ome.model.annotations.FileAnnotation: Many-to-one field ome.model.annotations.FileAnnotation.file (ome.model.core.OriginalFile)
getFileset() - Method in class ome.model.core.Image: Many-to-one field ome.model.core.Image.fileset (ome.model.fs.Fileset)
getFileset() - Method in class ome.model.fs.FilesetEntry: Many-to-one field ome.model.fs.FilesetEntry.fileset (ome.model.fs.Fileset)
getFilesetEntries() - Method in class ome.model.core.OriginalFile: returns filesetEntries .
getFilesetEntry(int) - Method in class ome.model.fs.Fileset: Gets the ome.model.fs.FilesetEntry at the given index.
getFilesetJobLink(int) - Method in class ome.model.fs.Fileset: Gets the ome.model.fs.FilesetJobLink at the given index.
getFillColor() - Method in class ome.model.roi.Shape: Simple field ome.model.roi.Shape.fillColor (java.lang.Integer)
getFillRule() - Method in class ome.model.roi.Shape: Simple field ome.model.roi.Shape.fillRule (java.lang.String)
getFilter() - Method in class ome.model.acquisition.Instrument: returns filter .
getFilter() - Method in class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdmin
getFilter() - Method in class ome.util.PrivilegedStringTypeDescriptor.FilteredRelatedUser
getFilter() - Method in class ome.util.PrivilegedStringTypeDescriptor
getFilterFailure() - Method in class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdminHidden
getFilterFailure() - Method in class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdminUUID
getFilterFailure() - Method in class ome.util.PrivilegedStringTypeDescriptor.FilteredRelatedUserHidden
getFilterFailure() - Method in class ome.util.PrivilegedStringTypeDescriptor
getFilterSet() - Method in class ome.model.acquisition.Instrument: returns filterSet .
getFilterSet() - Method in class ome.model.acquisition.OTF: Many-to-one field ome.model.acquisition.OTF.filterSet (ome.model.acquisition.FilterSet)
getFilterSet() - Method in class ome.model.core.LogicalChannel: Many-to-one field ome.model.core.LogicalChannel.filterSet (ome.model.acquisition.FilterSet)
getFilterWheel() - Method in class ome.model.acquisition.Filter: Simple field ome.model.acquisition.Filter.filterWheel (java.lang.String)
getFinished() - Method in class ome.model.jobs.Job: Simple field ome.model.jobs.Job.finished (java.sql.Timestamp)
getFinished() - Method in class ome.model.meta.DBPatch: Simple field ome.model.meta.DBPatch.finished (java.sql.Timestamp)
getFirstName() - Method in class ome.model.meta.Experimenter: Simple field ome.model.meta.Experimenter.firstName (java.lang.String)
getFluor() - Method in class ome.model.core.LogicalChannel: Simple field ome.model.core.LogicalChannel.fluor (java.lang.String)
getFolderLinks() - Method in class ome.model.core.Image: returns folderLinks .
getFolderLinks() - Method in class ome.model.roi.Roi: returns folderLinks .
getFolderLinksCountPerOwner() - Method in class ome.model.core.Image: If fetched, returns the count(*) of ome.model.containers.FolderImageLink that a user has.
getFolderLinksCountPerOwner() - Method in class ome.model.roi.Roi: If fetched, returns the count(*) of ome.model.containers.FolderRoiLink that a user has.
getFontFamily() - Method in class ome.model.roi.Shape: Simple field ome.model.roi.Shape.fontFamily (java.lang.String)
getFontSize() - Method in class ome.model.roi.Shape: Enum-mapped unit-based field ome.model.roi.Shape.fontSize (ome.model.units.Length)
getFontStyle() - Method in class ome.model.roi.Shape: Simple field ome.model.roi.Shape.fontStyle (java.lang.String)
getFormat() - Method in class ome.model.core.Image: Many-to-one field ome.model.core.Image.format (ome.model.enums.Format)
getFrequencyMultiplication() - Method in class ome.model.acquisition.Laser: Simple field ome.model.acquisition.Laser.frequencyMultiplication (java.lang.Integer)
getGain() - Method in class ome.model.acquisition.Detector: Simple field ome.model.acquisition.Detector.gain (java.lang.Double)
getGain() - Method in class ome.model.acquisition.DetectorSettings: Simple field ome.model.acquisition.DetectorSettings.gain (java.lang.Double)
getGlobalMax() - Method in class ome.model.stats.StatsInfo: Simple field ome.model.stats.StatsInfo.globalMax (java.lang.Double)
getGlobalMin() - Method in class ome.model.stats.StatsInfo: Simple field ome.model.stats.StatsInfo.globalMin (java.lang.Double)
getGraphHolder() - Method in class ome.model.acquisition.Detector
getGraphHolder() - Method in class ome.model.acquisition.DetectorSettings
getGraphHolder() - Method in class ome.model.acquisition.Dichroic
getGraphHolder() - Method in class ome.model.acquisition.Filter
getGraphHolder() - Method in class ome.model.acquisition.FilterSet
getGraphHolder() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
getGraphHolder() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
getGraphHolder() - Method in class ome.model.acquisition.ImagingEnvironment
getGraphHolder() - Method in class ome.model.acquisition.Instrument
getGraphHolder() - Method in class ome.model.acquisition.LightPath
getGraphHolder() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
getGraphHolder() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
getGraphHolder() - Method in class ome.model.acquisition.LightSettings
getGraphHolder() - Method in class ome.model.acquisition.LightSource
getGraphHolder() - Method in class ome.model.acquisition.Microscope
getGraphHolder() - Method in class ome.model.acquisition.Objective
getGraphHolder() - Method in class ome.model.acquisition.ObjectiveSettings
getGraphHolder() - Method in class ome.model.acquisition.OTF
getGraphHolder() - Method in class ome.model.acquisition.StageLabel
getGraphHolder() - Method in class ome.model.acquisition.TransmittanceRange
getGraphHolder() - Method in class ome.model.annotations.Annotation
getGraphHolder() - Method in class ome.model.annotations.AnnotationAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.ChannelAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.DatasetAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.DetectorAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.DichroicAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.ExperimenterAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.FilesetAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.FilterAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.FolderAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.ImageAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.InstrumentAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.LightPathAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.LightSourceAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.NamespaceAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.NodeAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.ObjectiveAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.OriginalFileAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.PlateAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.ProjectAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.ReagentAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.RoiAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.ScreenAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.SessionAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.ShapeAnnotationLink
getGraphHolder() - Method in class ome.model.annotations.WellAnnotationLink
getGraphHolder() - Method in class ome.model.containers.Dataset
getGraphHolder() - Method in class ome.model.containers.DatasetImageLink
getGraphHolder() - Method in class ome.model.containers.Folder
getGraphHolder() - Method in class ome.model.containers.FolderImageLink
getGraphHolder() - Method in class ome.model.containers.FolderRoiLink
getGraphHolder() - Method in class ome.model.containers.Project
getGraphHolder() - Method in class ome.model.containers.ProjectDatasetLink
getGraphHolder() - Method in class ome.model.core.Channel
getGraphHolder() - Method in class ome.model.core.Image
getGraphHolder() - Method in class ome.model.core.LogicalChannel
getGraphHolder() - Method in class ome.model.core.OriginalFile
getGraphHolder() - Method in class ome.model.core.Pixels
getGraphHolder() - Method in class ome.model.core.PixelsOriginalFileMap
getGraphHolder() - Method in class ome.model.core.PlaneInfo
getGraphHolder() - Method in class ome.model.display.ChannelBinding
getGraphHolder() - Method in class ome.model.display.CodomainMapContext
getGraphHolder() - Method in class ome.model.display.ProjectionDef
getGraphHolder() - Method in class ome.model.display.QuantumDef
getGraphHolder() - Method in class ome.model.display.RenderingDef
getGraphHolder() - Method in class ome.model.display.Thumbnail
getGraphHolder() - Method in class ome.model.enums.AcquisitionMode
getGraphHolder() - Method in class ome.model.enums.AdminPrivilege
getGraphHolder() - Method in class ome.model.enums.ArcType
getGraphHolder() - Method in class ome.model.enums.Binning
getGraphHolder() - Method in class ome.model.enums.ChecksumAlgorithm
getGraphHolder() - Method in class ome.model.enums.ContrastMethod
getGraphHolder() - Method in class ome.model.enums.Correction
getGraphHolder() - Method in class ome.model.enums.DetectorType
getGraphHolder() - Method in class ome.model.enums.DimensionOrder
getGraphHolder() - Method in class ome.model.enums.EventType
getGraphHolder() - Method in class ome.model.enums.ExperimentType
getGraphHolder() - Method in class ome.model.enums.Family
getGraphHolder() - Method in class ome.model.enums.FilamentType
getGraphHolder() - Method in class ome.model.enums.FilterType
getGraphHolder() - Method in class ome.model.enums.Format
getGraphHolder() - Method in class ome.model.enums.Illumination
getGraphHolder() - Method in class ome.model.enums.Immersion
getGraphHolder() - Method in class ome.model.enums.LaserMedium
getGraphHolder() - Method in class ome.model.enums.LaserType
getGraphHolder() - Method in class ome.model.enums.Medium
getGraphHolder() - Method in class ome.model.enums.MicrobeamManipulationType
getGraphHolder() - Method in class ome.model.enums.MicroscopeType
getGraphHolder() - Method in class ome.model.enums.PhotometricInterpretation
getGraphHolder() - Method in class ome.model.enums.PixelsType
getGraphHolder() - Method in class ome.model.enums.ProjectionAxis
getGraphHolder() - Method in class ome.model.enums.ProjectionType
getGraphHolder() - Method in class ome.model.enums.Pulse
getGraphHolder() - Method in class ome.model.enums.RenderingModel
getGraphHolder() - Method in class ome.model.experiment.Experiment
getGraphHolder() - Method in class ome.model.experiment.MicrobeamManipulation
getGraphHolder() - Method in class ome.model.fs.Fileset
getGraphHolder() - Method in class ome.model.fs.FilesetEntry
getGraphHolder() - Method in class ome.model.fs.FilesetJobLink
getGraphHolder() - Method in class ome.model.internal.Link
getGraphHolder() - Method in interface ome.model.IObject: retrieves the GraphHolder for this entity.
getGraphHolder() - Method in class ome.model.jobs.Job
getGraphHolder() - Method in class ome.model.jobs.JobOriginalFileLink
getGraphHolder() - Method in class ome.model.jobs.JobStatus
getGraphHolder() - Method in class ome.model.meta.DBPatch
getGraphHolder() - Method in class ome.model.meta.Event
getGraphHolder() - Method in class ome.model.meta.EventLog
getGraphHolder() - Method in class ome.model.meta.Experimenter
getGraphHolder() - Method in class ome.model.meta.ExperimenterGroup
getGraphHolder() - Method in class ome.model.meta.ExternalInfo
getGraphHolder() - Method in class ome.model.meta.GroupExperimenterMap
getGraphHolder() - Method in class ome.model.meta.Namespace
getGraphHolder() - Method in class ome.model.meta.Node
getGraphHolder() - Method in class ome.model.meta.Session
getGraphHolder() - Method in class ome.model.meta.ShareMember
getGraphHolder() - Method in class ome.model.roi.AffineTransform
getGraphHolder() - Method in class ome.model.roi.Roi
getGraphHolder() - Method in class ome.model.roi.Shape
getGraphHolder() - Method in class ome.model.screen.Plate
getGraphHolder() - Method in class ome.model.screen.PlateAcquisition
getGraphHolder() - Method in class ome.model.screen.Reagent
getGraphHolder() - Method in class ome.model.screen.Screen
getGraphHolder() - Method in class ome.model.screen.ScreenPlateLink
getGraphHolder() - Method in class ome.model.screen.Well
getGraphHolder() - Method in class ome.model.screen.WellReagentLink
getGraphHolder() - Method in class ome.model.screen.WellSample
getGraphHolder() - Method in class ome.model.stats.StatsInfo
getGraphHolder() - Method in class ome.util.PermDetails
getGreen() - Method in class ome.model.core.Channel: Simple field ome.model.core.Channel.green (java.lang.Integer)
getGreen() - Method in class ome.model.display.ChannelBinding: Simple field ome.model.display.ChannelBinding.green (java.lang.Integer)
getGreen() - Method in class ome.model.screen.Well: Simple field ome.model.screen.Well.green (java.lang.Integer)
getGroup() - Method in class ome.model.acquisition.Detector.Details
getGroup() - Method in class ome.model.acquisition.DetectorSettings.Details
getGroup() - Method in class ome.model.acquisition.Dichroic.Details
getGroup() - Method in class ome.model.acquisition.Filter.Details
getGroup() - Method in class ome.model.acquisition.FilterSet.Details
getGroup() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
getGroup() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
getGroup() - Method in class ome.model.acquisition.ImagingEnvironment.Details
getGroup() - Method in class ome.model.acquisition.Instrument.Details
getGroup() - Method in class ome.model.acquisition.LightPath.Details
getGroup() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
getGroup() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
getGroup() - Method in class ome.model.acquisition.LightSettings.Details
getGroup() - Method in class ome.model.acquisition.LightSource.Details
getGroup() - Method in class ome.model.acquisition.Microscope.Details
getGroup() - Method in class ome.model.acquisition.Objective.Details
getGroup() - Method in class ome.model.acquisition.ObjectiveSettings.Details
getGroup() - Method in class ome.model.acquisition.OTF.Details
getGroup() - Method in class ome.model.acquisition.StageLabel.Details
getGroup() - Method in class ome.model.acquisition.TransmittanceRange.Details
getGroup() - Method in class ome.model.annotations.Annotation.Details
getGroup() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.FilterAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.FolderAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.ImageAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.NodeAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.PlateAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.RoiAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.SessionAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
getGroup() - Method in class ome.model.annotations.WellAnnotationLink.Details
getGroup() - Method in class ome.model.containers.Dataset.Details
getGroup() - Method in class ome.model.containers.DatasetImageLink.Details
getGroup() - Method in class ome.model.containers.Folder.Details
getGroup() - Method in class ome.model.containers.FolderImageLink.Details
getGroup() - Method in class ome.model.containers.FolderRoiLink.Details
getGroup() - Method in class ome.model.containers.Project.Details
getGroup() - Method in class ome.model.containers.ProjectDatasetLink.Details
getGroup() - Method in class ome.model.core.Channel.Details
getGroup() - Method in class ome.model.core.Image.Details
getGroup() - Method in class ome.model.core.LogicalChannel.Details
getGroup() - Method in class ome.model.core.OriginalFile.Details
getGroup() - Method in class ome.model.core.Pixels.Details
getGroup() - Method in class ome.model.core.PixelsOriginalFileMap.Details
getGroup() - Method in class ome.model.core.PlaneInfo.Details
getGroup() - Method in class ome.model.display.ChannelBinding.Details
getGroup() - Method in class ome.model.display.CodomainMapContext.Details
getGroup() - Method in class ome.model.display.ProjectionDef.Details
getGroup() - Method in class ome.model.display.QuantumDef.Details
getGroup() - Method in class ome.model.display.RenderingDef.Details
getGroup() - Method in class ome.model.display.Thumbnail.Details
getGroup() - Method in class ome.model.experiment.Experiment.Details
getGroup() - Method in class ome.model.experiment.MicrobeamManipulation.Details
getGroup() - Method in class ome.model.fs.Fileset.Details
getGroup() - Method in class ome.model.fs.FilesetEntry.Details
getGroup() - Method in class ome.model.fs.FilesetJobLink.Details
getGroup() - Method in class ome.model.internal.Details
getGroup() - Method in class ome.model.internal.Link.Details
getGroup() - Method in class ome.model.jobs.Job.Details
getGroup() - Method in class ome.model.jobs.JobOriginalFileLink.Details
getGroup() - Method in class ome.model.meta.ExternalInfo.Details
getGroup() - Method in class ome.model.meta.Share: Many-to-one field ome.model.meta.Share.group (ome.model.meta.ExperimenterGroup)
getGroup() - Method in class ome.model.roi.AffineTransform.Details
getGroup() - Method in class ome.model.roi.Roi.Details
getGroup() - Method in class ome.model.roi.Shape.Details
getGroup() - Method in class ome.model.screen.Plate.Details
getGroup() - Method in class ome.model.screen.PlateAcquisition.Details
getGroup() - Method in class ome.model.screen.Reagent.Details
getGroup() - Method in class ome.model.screen.Screen.Details
getGroup() - Method in class ome.model.screen.ScreenPlateLink.Details
getGroup() - Method in class ome.model.screen.Well.Details
getGroup() - Method in class ome.model.screen.WellReagentLink.Details
getGroup() - Method in class ome.model.screen.WellSample.Details
getGroup() - Method in class ome.model.stats.StatsInfo.Details
getGroup() - Method in class ome.parameters.Parameters: Fulfills the old PojoOptions requirement for returning null if no owner set.
getGroupExperimenterMap() - Method in class ome.model.meta.Experimenter: returns groupExperimenterMap .
getGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup: returns groupExperimenterMap .
getGroupExperimenterMap(int) - Method in class ome.model.meta.Experimenter: Gets the ome.model.meta.GroupExperimenterMap at the given index.
getGroupIds(Collection<String>) - Method in interface ome.util.SqlAction
getGroupIds(Collection<String>) - Method in class ome.util.SqlAction.Impl
getGroupname() - Method in class ome.model.jobs.Job: Simple field ome.model.jobs.Job.groupname (java.lang.String)
getGroupPermissions(long) - Method in interface ome.util.SqlAction: Returns the permissions for the given group id.
getGroupPermissions(long) - Method in class ome.util.SqlAction.Impl
getHash() - Method in class ome.model.core.OriginalFile: Simple field ome.model.core.OriginalFile.hash (java.lang.String)
getHasher() - Method in class ome.model.core.OriginalFile: Many-to-one field ome.model.core.OriginalFile.hasher (ome.model.enums.ChecksumAlgorithm)
getHeight() - Method in class ome.model.roi.Mask: Simple field ome.model.roi.Mask.height (java.lang.Double)
getHeight() - Method in class ome.model.roi.Rectangle: Simple field ome.model.roi.Rectangle.height (java.lang.Double)
getHumidity() - Method in class ome.model.acquisition.ImagingEnvironment: Simple field ome.model.acquisition.ImagingEnvironment.humidity (java.lang.Double)
getId() - Method in class ome.model.acquisition.Detector: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.DetectorSettings: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.Dichroic: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.Filter: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.FilterSet: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.ImagingEnvironment: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.Instrument: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.LightPath: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.LightPathEmissionFilterLink: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.LightPathExcitationFilterLink: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.LightSettings: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.LightSource: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.Microscope: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.Objective: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.ObjectiveSettings: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.OTF: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.StageLabel: The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.TransmittanceRange: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.Annotation: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.AnnotationAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ChannelAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.DatasetAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.DetectorAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.DichroicAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ExperimenterAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.FilesetAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.FilterAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.FolderAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ImageAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.InstrumentAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.LightPathAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.LightSourceAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.NamespaceAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.NodeAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ObjectiveAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.OriginalFileAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.PlaneInfoAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.PlateAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ProjectAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ReagentAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.RoiAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ScreenAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.SessionAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ShapeAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.WellAnnotationLink: The DB unique identifier for this object.
getId() - Method in class ome.model.containers.Dataset: The DB unique identifier for this object.
getId() - Method in class ome.model.containers.DatasetImageLink: The DB unique identifier for this object.
getId() - Method in class ome.model.containers.Folder: The DB unique identifier for this object.
getId() - Method in class ome.model.containers.FolderImageLink: The DB unique identifier for this object.
getId() - Method in class ome.model.containers.FolderRoiLink: The DB unique identifier for this object.
getId() - Method in class ome.model.containers.Project: The DB unique identifier for this object.
getId() - Method in class ome.model.containers.ProjectDatasetLink: The DB unique identifier for this object.
getId() - Method in class ome.model.core.Channel: The DB unique identifier for this object.
getId() - Method in class ome.model.core.Image: The DB unique identifier for this object.
getId() - Method in class ome.model.core.LogicalChannel: The DB unique identifier for this object.
getId() - Method in class ome.model.core.OriginalFile: The DB unique identifier for this object.
getId() - Method in class ome.model.core.Pixels: The DB unique identifier for this object.
getId() - Method in class ome.model.core.PixelsOriginalFileMap: The DB unique identifier for this object.
getId() - Method in class ome.model.core.PlaneInfo: The DB unique identifier for this object.
getId() - Method in class ome.model.display.ChannelBinding: The DB unique identifier for this object.
getId() - Method in class ome.model.display.CodomainMapContext: The DB unique identifier for this object.
getId() - Method in class ome.model.display.ProjectionDef: The DB unique identifier for this object.
getId() - Method in class ome.model.display.QuantumDef: The DB unique identifier for this object.
getId() - Method in class ome.model.display.RenderingDef: The DB unique identifier for this object.
getId() - Method in class ome.model.display.Thumbnail: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.AcquisitionMode: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.AdminPrivilege: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ArcType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Binning: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ChecksumAlgorithm: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ContrastMethod: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Correction: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.DetectorType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.DimensionOrder: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.EventType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ExperimentType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Family: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.FilamentType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.FilterType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Format: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Illumination: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Immersion: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.LaserMedium: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.LaserType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Medium: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.MicrobeamManipulationType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.MicroscopeType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.PhotometricInterpretation: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.PixelsType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ProjectionAxis: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ProjectionType: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Pulse: The DB unique identifier for this object.
getId() - Method in class ome.model.enums.RenderingModel: The DB unique identifier for this object.
getId() - Method in class ome.model.experiment.Experiment: The DB unique identifier for this object.
getId() - Method in class ome.model.experiment.MicrobeamManipulation: The DB unique identifier for this object.
getId() - Method in class ome.model.fs.Fileset: The DB unique identifier for this object.
getId() - Method in class ome.model.fs.FilesetEntry: The DB unique identifier for this object.
getId() - Method in class ome.model.fs.FilesetJobLink: The DB unique identifier for this object.
getId() - Method in class ome.model.internal.Link: The DB unique identifier for this object.
getId() - Method in interface ome.model.IObject: primary key of this object.
getId() - Method in class ome.model.jobs.Job: The DB unique identifier for this object.
getId() - Method in class ome.model.jobs.JobOriginalFileLink: The DB unique identifier for this object.
getId() - Method in class ome.model.jobs.JobStatus: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.DBPatch: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.Event: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.EventLog: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.Experimenter: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.ExperimenterGroup: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.ExternalInfo: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.GroupExperimenterMap: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.Namespace: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.Node: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.Session: The DB unique identifier for this object.
getId() - Method in class ome.model.meta.ShareMember: The DB unique identifier for this object.
getId() - Method in class ome.model.roi.AffineTransform: The DB unique identifier for this object.
getId() - Method in class ome.model.roi.Roi: The DB unique identifier for this object.
getId() - Method in class ome.model.roi.Shape: The DB unique identifier for this object.
getId() - Method in class ome.model.screen.Plate: The DB unique identifier for this object.
getId() - Method in class ome.model.screen.PlateAcquisition: The DB unique identifier for this object.
getId() - Method in class ome.model.screen.Reagent: The DB unique identifier for this object.
getId() - Method in class ome.model.screen.Screen: The DB unique identifier for this object.
getId() - Method in class ome.model.screen.ScreenPlateLink: The DB unique identifier for this object.
getId() - Method in class ome.model.screen.Well: The DB unique identifier for this object.
getId() - Method in class ome.model.screen.WellReagentLink: The DB unique identifier for this object.
getId() - Method in class ome.model.screen.WellSample: The DB unique identifier for this object.
getId() - Method in class ome.model.stats.StatsInfo: The DB unique identifier for this object.
getId() - Method in class ome.util.PermDetails
getIllumination() - Method in class ome.model.core.LogicalChannel: Many-to-one field ome.model.core.LogicalChannel.illumination (ome.model.enums.Illumination)
getImage() - Method in class ome.model.core.Pixels: Many-to-one field ome.model.core.Pixels.image (ome.model.core.Image)
getImage() - Method in class ome.model.roi.Roi: Many-to-one field ome.model.roi.Roi.image (ome.model.core.Image)
getImage() - Method in class ome.model.screen.WellSample: Many-to-one field ome.model.screen.WellSample.image (ome.model.core.Image)
getImageDescription() - Method in class ome.model.jobs.ImportJob: Deprecated.

Simple field ome.model.jobs.ImportJob.imageDescription (java.lang.String)
getImageLinks() - Method in class ome.model.containers.Dataset: returns imageLinks .
getImageLinks() - Method in class ome.model.containers.Folder: returns imageLinks .
getImageLinksCountPerOwner() - Method in class ome.model.containers.Dataset: If fetched, returns the count(*) of ome.model.containers.DatasetImageLink that a user has.
getImageLinksCountPerOwner() - Method in class ome.model.containers.Folder: If fetched, returns the count(*) of ome.model.containers.FolderImageLink that a user has.
getImageName() - Method in class ome.model.jobs.ImportJob: Deprecated.

Simple field ome.model.jobs.ImportJob.imageName (java.lang.String)
getImages() - Method in class ome.model.fs.Fileset: returns images .
getImagingEnvironment() - Method in class ome.model.core.Image: Many-to-one field ome.model.core.Image.imagingEnvironment (ome.model.acquisition.ImagingEnvironment)
getImmersion() - Method in class ome.model.acquisition.Objective: Many-to-one field ome.model.acquisition.Objective.immersion (ome.model.enums.Immersion)
getIndexes() - Method in class ome.util.LSID: Returns the indexes for this LSID within the OME-XML data model.
getInputEnd() - Method in class ome.model.display.ChannelBinding: Simple field ome.model.display.ChannelBinding.inputEnd (java.lang.Double)
getInputStart() - Method in class ome.model.display.ChannelBinding: Simple field ome.model.display.ChannelBinding.inputStart (java.lang.Double)
getInstitution() - Method in class ome.model.meta.Experimenter: Simple field ome.model.meta.Experimenter.institution (java.lang.String)
getInstrument() - Method in class ome.model.acquisition.Detector: Many-to-one field ome.model.acquisition.Detector.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.Dichroic: Many-to-one field ome.model.acquisition.Dichroic.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.Filter: Many-to-one field ome.model.acquisition.Filter.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.FilterSet: Many-to-one field ome.model.acquisition.FilterSet.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.LightSource: Many-to-one field ome.model.acquisition.LightSource.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.Objective: Many-to-one field ome.model.acquisition.Objective.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.OTF: Many-to-one field ome.model.acquisition.OTF.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.core.Image: Many-to-one field ome.model.core.Image.instrument (ome.model.acquisition.Instrument)
getIntegration() - Method in class ome.model.acquisition.DetectorSettings: Simple field ome.model.acquisition.DetectorSettings.integration (java.lang.Integer)
getInternalContext() - Method in class ome.util.PermDetails: In order to properly test the permissions for this object, it must be possible to get the internal context.
getIris() - Method in class ome.model.acquisition.Objective: Simple field ome.model.acquisition.Objective.iris (java.lang.Boolean)
getItemCount() - Method in class ome.model.meta.Share: Simple field ome.model.meta.Share.itemCount (java.lang.Long)
getJavaClass() - Method in class ome.util.LSID: Returns the Java class which qualifies the type of object this LSID represents.
getJobLinks() - Method in class ome.model.fs.Fileset: returns jobLinks .
getJobLinksCountPerOwner() - Method in class ome.model.fs.Fileset: If fetched, returns the count(*) of ome.model.fs.FilesetJobLink that a user has.
getKeywords() - Method in class ome.model.meta.Namespace: Simple field ome.model.meta.Namespace.keywords (java.util.List)
getLaserMedium() - Method in class ome.model.acquisition.Laser: Many-to-one field ome.model.acquisition.Laser.laserMedium (ome.model.enums.LaserMedium)
getLastName() - Method in class ome.model.meta.Experimenter: Simple field ome.model.meta.Experimenter.lastName (java.lang.String)
getLdap() - Method in class ome.model.meta.Experimenter: Simple field ome.model.meta.Experimenter.ldap (java.lang.Boolean)
getLdap() - Method in class ome.model.meta.ExperimenterGroup: Simple field ome.model.meta.ExperimenterGroup.ldap (java.lang.Boolean)
getLdapExperimenters() - Method in interface ome.util.SqlAction: Gets the experimenters who have the ldap attribute enabled.
getLdapExperimenters() - Method in class ome.util.SqlAction.Impl
getLensNA() - Method in class ome.model.acquisition.Objective: Simple field ome.model.acquisition.Objective.lensNA (java.lang.Double)
getLightPath() - Method in class ome.model.core.LogicalChannel: Many-to-one field ome.model.core.LogicalChannel.lightPath (ome.model.acquisition.LightPath)
getLightPathExcitationFilterLink(int) - Method in class ome.model.acquisition.LightPath: Gets the ome.model.acquisition.LightPathExcitationFilterLink at the given index.
getLightSource() - Method in class ome.model.acquisition.Instrument: returns lightSource .
getLightSource() - Method in class ome.model.acquisition.LightSettings: Many-to-one field ome.model.acquisition.LightSettings.lightSource (ome.model.acquisition.LightSource)
getLightSourceSettings() - Method in class ome.model.core.LogicalChannel: Many-to-one field ome.model.core.LogicalChannel.lightSourceSettings (ome.model.acquisition.LightSettings)
getLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation: returns lightSourceSettings .
getLimit() - Method in class ome.parameters.Parameters
getLocked() - Method in class ome.model.roi.Shape: Simple field ome.model.roi.Shape.locked (java.lang.Boolean)
getLogicalChannel() - Method in class ome.model.core.Channel: Many-to-one field ome.model.core.Channel.logicalChannel (ome.model.core.LogicalChannel)
getLogs() - Method in class ome.model.meta.Event: returns logs .
getLongValue() - Method in class ome.model.annotations.LongAnnotation: Simple field ome.model.annotations.LongAnnotation.longValue (java.lang.Long)
getLookupTable() - Method in class ome.model.core.Channel: Simple field ome.model.core.Channel.lookupTable (java.lang.String)
getLookupTable() - Method in class ome.model.display.ChannelBinding: Simple field ome.model.display.ChannelBinding.lookupTable (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.Detector: Simple field ome.model.acquisition.Detector.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.Dichroic: Simple field ome.model.acquisition.Dichroic.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.Filter: Simple field ome.model.acquisition.Filter.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.FilterSet: Simple field ome.model.acquisition.FilterSet.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.LightSource: Simple field ome.model.acquisition.LightSource.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.Microscope: Simple field ome.model.acquisition.Microscope.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.Objective: Simple field ome.model.acquisition.Objective.lotNumber (java.lang.String)
getLowerLimit() - Method in class ome.model.display.PlaneSlicingContext: Simple field ome.model.display.PlaneSlicingContext.lowerLimit (java.lang.Integer)
getLsid() - Method in class ome.model.meta.ExternalInfo: Simple field ome.model.meta.ExternalInfo.lsid (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.Detector: Simple field ome.model.acquisition.Detector.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.Dichroic: Simple field ome.model.acquisition.Dichroic.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.Filter: Simple field ome.model.acquisition.Filter.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.FilterSet: Simple field ome.model.acquisition.FilterSet.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.LightSource: Simple field ome.model.acquisition.LightSource.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.Microscope: Simple field ome.model.acquisition.Microscope.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.Objective: Simple field ome.model.acquisition.Objective.manufacturer (java.lang.String)
getMap() - Method in class ome.model.acquisition.GenericExcitationSource
getMap() - Method in class ome.model.acquisition.ImagingEnvironment
getMapValue() - Method in class ome.model.annotations.MapAnnotation
getMarkerEnd() - Method in class ome.model.roi.Line: Simple field ome.model.roi.Line.markerEnd (java.lang.String)
getMarkerEnd() - Method in class ome.model.roi.Polyline: Simple field ome.model.roi.Polyline.markerEnd (java.lang.String)
getMarkerStart() - Method in class ome.model.roi.Line: Simple field ome.model.roi.Line.markerStart (java.lang.String)
getMarkerStart() - Method in class ome.model.roi.Polyline: Simple field ome.model.roi.Polyline.markerStart (java.lang.String)
getMaximum() - Method in class ome.util.PixelData: Returns the minimum pixel value this pixel data supports.
getMaximumFieldCount() - Method in class ome.model.screen.PlateAcquisition: Simple field ome.model.screen.PlateAcquisition.maximumFieldCount (java.lang.Integer)
getMedium() - Method in class ome.model.acquisition.ObjectiveSettings: Many-to-one field ome.model.acquisition.ObjectiveSettings.medium (ome.model.enums.Medium)
getMessage() - Method in exception ome.conditions.acl.ACLViolation
getMessage() - Method in exception ome.conditions.acl.CollectedACLViolations
getMessage() - Method in class ome.model.jobs.Job: Simple field ome.model.jobs.Job.message (java.lang.String)
getMessage() - Method in class ome.model.meta.DBPatch: Simple field ome.model.meta.DBPatch.message (java.lang.String)
getMessage() - Method in class ome.model.meta.Session: Simple field ome.model.meta.Session.message (java.lang.String)
getMethodology() - Method in class ome.model.core.Pixels: Simple field ome.model.core.Pixels.methodology (java.lang.String)
getMicrobeamManipulation() - Method in class ome.model.acquisition.LightSettings: Many-to-one field ome.model.acquisition.LightSettings.microbeamManipulation (ome.model.experiment.MicrobeamManipulation)
getMicrobeamManipulation() - Method in class ome.model.experiment.Experiment: returns microbeamManipulation .
getMicroscope() - Method in class ome.model.acquisition.Instrument: Many-to-one field ome.model.acquisition.Instrument.microscope (ome.model.acquisition.Microscope)
getMiddleName() - Method in class ome.model.meta.Experimenter: Simple field ome.model.meta.Experimenter.middleName (java.lang.String)
getMimetype() - Method in class ome.model.core.OriginalFile: Simple field ome.model.core.OriginalFile.mimetype (java.lang.String)
getMimeType() - Method in class ome.model.display.Thumbnail: Simple field ome.model.display.Thumbnail.mimeType (java.lang.String)
getMinimum() - Method in class ome.util.PixelData: Returns the minimum pixel value this pixel data supports.
getMode() - Method in class ome.model.core.LogicalChannel: Many-to-one field ome.model.core.LogicalChannel.mode (ome.model.enums.AcquisitionMode)
getModel() - Method in class ome.model.acquisition.Detector: Simple field ome.model.acquisition.Detector.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.Dichroic: Simple field ome.model.acquisition.Dichroic.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.Filter: Simple field ome.model.acquisition.Filter.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.FilterSet: Simple field ome.model.acquisition.FilterSet.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.LightSource: Simple field ome.model.acquisition.LightSource.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.Microscope: Simple field ome.model.acquisition.Microscope.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.Objective: Simple field ome.model.acquisition.Objective.model (java.lang.String)
getModel() - Method in class ome.model.display.RenderingDef: Many-to-one field ome.model.display.RenderingDef.model (ome.model.enums.RenderingModel)
getMtime() - Method in class ome.model.core.OriginalFile: Simple field ome.model.core.OriginalFile.mtime (java.sql.Timestamp)
getMultivalued() - Method in class ome.model.meta.Namespace: Simple field ome.model.meta.Namespace.multivalued (java.lang.Boolean)
getName() - Method in class ome.model.acquisition.StageLabel: Simple field ome.model.acquisition.StageLabel.name (java.lang.String)
getName() - Method in class ome.model.annotations.Annotation: Simple field ome.model.annotations.Annotation.name (java.lang.String)
getName() - Method in class ome.model.containers.Dataset: Simple field ome.model.containers.Dataset.name (java.lang.String)
getName() - Method in class ome.model.containers.Folder: Simple field ome.model.containers.Folder.name (java.lang.String)
getName() - Method in class ome.model.containers.Project: Simple field ome.model.containers.Project.name (java.lang.String)
getName() - Method in class ome.model.core.Image: Simple field ome.model.core.Image.name (java.lang.String)
getName() - Method in class ome.model.core.LogicalChannel: Simple field ome.model.core.LogicalChannel.name (java.lang.String)
getName() - Method in class ome.model.core.OriginalFile: Simple field ome.model.core.OriginalFile.name (java.lang.String)
getName() - Method in class ome.model.display.RenderingDef: Simple field ome.model.display.RenderingDef.name (java.lang.String)
getName() - Method in class ome.model.internal.NamedValue
getName() - Method in class ome.model.meta.ExperimenterGroup: Simple field ome.model.meta.ExperimenterGroup.name (java.lang.String)
getName() - Method in class ome.model.meta.Namespace: Simple field ome.model.meta.Namespace.name (java.lang.String)
getName() - Method in class ome.model.roi.Roi: Simple field ome.model.roi.Roi.name (java.lang.String)
getName() - Method in class ome.model.screen.Plate: Simple field ome.model.screen.Plate.name (java.lang.String)
getName() - Method in class ome.model.screen.PlateAcquisition: Simple field ome.model.screen.PlateAcquisition.name (java.lang.String)
getName() - Method in class ome.model.screen.Reagent: Simple field ome.model.screen.Reagent.name (java.lang.String)
getName() - Method in class ome.model.screen.Screen: Simple field ome.model.screen.Screen.name (java.lang.String)
getName() - Method in class ome.util.PrivilegedStringType
getNdFilter() - Method in class ome.model.core.LogicalChannel: Simple field ome.model.core.LogicalChannel.ndFilter (java.lang.Double)
getNode() - Method in class ome.model.meta.Session: Many-to-one field ome.model.meta.Session.node (ome.model.meta.Node)
getNoiseReduction() - Method in class ome.model.display.ChannelBinding: Simple field ome.model.display.ChannelBinding.noiseReduction (java.lang.Boolean)
getNominalMagnification() - Method in class ome.model.acquisition.Objective: Simple field ome.model.acquisition.Objective.nominalMagnification (java.lang.Double)
getNs() - Method in class ome.model.annotations.Annotation: Simple field ome.model.annotations.Annotation.ns (java.lang.String)
getObjective() - Method in class ome.model.acquisition.Instrument: returns objective .
getObjective() - Method in class ome.model.acquisition.ObjectiveSettings: Many-to-one field ome.model.acquisition.ObjectiveSettings.objective (ome.model.acquisition.Objective)
getObjective() - Method in class ome.model.acquisition.OTF: Many-to-one field ome.model.acquisition.OTF.objective (ome.model.acquisition.Objective)
getObjectiveSettings() - Method in class ome.model.core.Image: Many-to-one field ome.model.core.Image.objectiveSettings (ome.model.acquisition.ObjectiveSettings)
getObjectVoidMethods(Class<T>) - Static method in class ome.util.Utils: primarily used in Grinder to discover what methods to call
getOffset() - Method in class ome.parameters.Parameters
getOffsetValue() - Method in class ome.model.acquisition.Detector: Simple field ome.model.acquisition.Detector.offsetValue (java.lang.Double)
getOffsetValue() - Method in class ome.model.acquisition.DetectorSettings: Simple field ome.model.acquisition.DetectorSettings.offsetValue (java.lang.Double)
getOmeName() - Method in class ome.model.meta.Experimenter: Simple field ome.model.meta.Experimenter.omeName (java.lang.String)
getOpticalAxisAveraged() - Method in class ome.model.acquisition.OTF: Simple field ome.model.acquisition.OTF.opticalAxisAveraged (java.lang.Boolean)
getOrder() - Method in class ome.util.PixelData: Returns the byte order of the backing buffer.
getOriginalFile() - Method in class ome.model.fs.FilesetEntry: Many-to-one field ome.model.fs.FilesetEntry.originalFile (ome.model.core.OriginalFile)
getOriginalFileLinks() - Method in class ome.model.jobs.Job: returns originalFileLinks .
getOriginalFileLinksCountPerOwner() - Method in class ome.model.jobs.Job: If fetched, returns the count(*) of ome.model.jobs.JobOriginalFileLink that a user has.
getOtf() - Method in class ome.model.acquisition.Instrument: returns otf .
getOtf() - Method in class ome.model.core.LogicalChannel: Many-to-one field ome.model.core.LogicalChannel.otf (ome.model.acquisition.OTF)
getOwner() - Method in class ome.model.acquisition.Detector.Details
getOwner() - Method in class ome.model.acquisition.DetectorSettings.Details
getOwner() - Method in class ome.model.acquisition.Dichroic.Details
getOwner() - Method in class ome.model.acquisition.Filter.Details
getOwner() - Method in class ome.model.acquisition.FilterSet.Details
getOwner() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
getOwner() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
getOwner() - Method in class ome.model.acquisition.ImagingEnvironment.Details
getOwner() - Method in class ome.model.acquisition.Instrument.Details
getOwner() - Method in class ome.model.acquisition.LightPath.Details
getOwner() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
getOwner() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
getOwner() - Method in class ome.model.acquisition.LightSettings.Details
getOwner() - Method in class ome.model.acquisition.LightSource.Details
getOwner() - Method in class ome.model.acquisition.Microscope.Details
getOwner() - Method in class ome.model.acquisition.Objective.Details
getOwner() - Method in class ome.model.acquisition.ObjectiveSettings.Details
getOwner() - Method in class ome.model.acquisition.OTF.Details
getOwner() - Method in class ome.model.acquisition.StageLabel.Details
getOwner() - Method in class ome.model.acquisition.TransmittanceRange.Details
getOwner() - Method in class ome.model.annotations.Annotation.Details
getOwner() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.FilterAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.FolderAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.ImageAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.NodeAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.PlateAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.RoiAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.SessionAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
getOwner() - Method in class ome.model.annotations.WellAnnotationLink.Details
getOwner() - Method in class ome.model.containers.Dataset.Details
getOwner() - Method in class ome.model.containers.DatasetImageLink.Details
getOwner() - Method in class ome.model.containers.Folder.Details
getOwner() - Method in class ome.model.containers.FolderImageLink.Details
getOwner() - Method in class ome.model.containers.FolderRoiLink.Details
getOwner() - Method in class ome.model.containers.Project.Details
getOwner() - Method in class ome.model.containers.ProjectDatasetLink.Details
getOwner() - Method in class ome.model.core.Channel.Details
getOwner() - Method in class ome.model.core.Image.Details
getOwner() - Method in class ome.model.core.LogicalChannel.Details
getOwner() - Method in class ome.model.core.OriginalFile.Details
getOwner() - Method in class ome.model.core.Pixels.Details
getOwner() - Method in class ome.model.core.PixelsOriginalFileMap.Details
getOwner() - Method in class ome.model.core.PlaneInfo.Details
getOwner() - Method in class ome.model.display.ChannelBinding.Details
getOwner() - Method in class ome.model.display.CodomainMapContext.Details
getOwner() - Method in class ome.model.display.ProjectionDef.Details
getOwner() - Method in class ome.model.display.QuantumDef.Details
getOwner() - Method in class ome.model.display.RenderingDef.Details
getOwner() - Method in class ome.model.display.Thumbnail.Details
getOwner() - Method in class ome.model.experiment.Experiment.Details
getOwner() - Method in class ome.model.experiment.MicrobeamManipulation.Details
getOwner() - Method in class ome.model.fs.Fileset.Details
getOwner() - Method in class ome.model.fs.FilesetEntry.Details
getOwner() - Method in class ome.model.fs.FilesetJobLink.Details
getOwner() - Method in interface ome.model.IDetails
getOwner() - Method in class ome.model.internal.Details
getOwner() - Method in class ome.model.internal.Link.Details
getOwner() - Method in class ome.model.jobs.Job.Details
getOwner() - Method in class ome.model.jobs.JobOriginalFileLink.Details
getOwner() - Method in class ome.model.meta.ExternalInfo.Details
getOwner() - Method in class ome.model.meta.GroupExperimenterMap: Simple field ome.model.meta.GroupExperimenterMap.owner (java.lang.Boolean)
getOwner() - Method in class ome.model.meta.Session: Many-to-one field ome.model.meta.Session.owner (ome.model.meta.Experimenter)
getOwner() - Method in class ome.model.roi.AffineTransform.Details
getOwner() - Method in class ome.model.roi.Roi.Details
getOwner() - Method in class ome.model.roi.Shape.Details
getOwner() - Method in class ome.model.screen.Plate.Details
getOwner() - Method in class ome.model.screen.PlateAcquisition.Details
getOwner() - Method in class ome.model.screen.Reagent.Details
getOwner() - Method in class ome.model.screen.Screen.Details
getOwner() - Method in class ome.model.screen.ScreenPlateLink.Details
getOwner() - Method in class ome.model.screen.Well.Details
getOwner() - Method in class ome.model.screen.WellReagentLink.Details
getOwner() - Method in class ome.model.screen.WellSample.Details
getOwner() - Method in class ome.model.stats.StatsInfo.Details
getParams() - Method in class ome.model.jobs.ParseJob: Simple field ome.model.jobs.ParseJob.params (byte[])
getParent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink: Many-to-one field ome.model.acquisition.FilterSetEmissionFilterLink.parent (ome.model.acquisition.FilterSet)
getParent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink: Many-to-one field ome.model.acquisition.FilterSetExcitationFilterLink.parent (ome.model.acquisition.FilterSet)
getParent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink: Many-to-one field ome.model.acquisition.LightPathEmissionFilterLink.parent (ome.model.acquisition.LightPath)
getParent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink: Many-to-one field ome.model.acquisition.LightPathExcitationFilterLink.parent (ome.model.acquisition.LightPath)
getParent() - Method in class ome.model.annotations.AnnotationAnnotationLink: Many-to-one field ome.model.annotations.AnnotationAnnotationLink.parent (ome.model.annotations.Annotation)
getParent() - Method in class ome.model.annotations.ChannelAnnotationLink: Many-to-one field ome.model.annotations.ChannelAnnotationLink.parent (ome.model.core.Channel)
getParent() - Method in class ome.model.annotations.DatasetAnnotationLink: Many-to-one field ome.model.annotations.DatasetAnnotationLink.parent (ome.model.containers.Dataset)
getParent() - Method in class ome.model.annotations.DetectorAnnotationLink: Many-to-one field ome.model.annotations.DetectorAnnotationLink.parent (ome.model.acquisition.Detector)
getParent() - Method in class ome.model.annotations.DichroicAnnotationLink: Many-to-one field ome.model.annotations.DichroicAnnotationLink.parent (ome.model.acquisition.Dichroic)
getParent() - Method in class ome.model.annotations.ExperimenterAnnotationLink: Many-to-one field ome.model.annotations.ExperimenterAnnotationLink.parent (ome.model.meta.Experimenter)
getParent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink: Many-to-one field ome.model.annotations.ExperimenterGroupAnnotationLink.parent (ome.model.meta.ExperimenterGroup)
getParent() - Method in class ome.model.annotations.FilesetAnnotationLink: Many-to-one field ome.model.annotations.FilesetAnnotationLink.parent (ome.model.fs.Fileset)
getParent() - Method in class ome.model.annotations.FilterAnnotationLink: Many-to-one field ome.model.annotations.FilterAnnotationLink.parent (ome.model.acquisition.Filter)
getParent() - Method in class ome.model.annotations.FolderAnnotationLink: Many-to-one field ome.model.annotations.FolderAnnotationLink.parent (ome.model.containers.Folder)
getParent() - Method in class ome.model.annotations.ImageAnnotationLink: Many-to-one field ome.model.annotations.ImageAnnotationLink.parent (ome.model.core.Image)
getParent() - Method in class ome.model.annotations.InstrumentAnnotationLink: Many-to-one field ome.model.annotations.InstrumentAnnotationLink.parent (ome.model.acquisition.Instrument)
getParent() - Method in class ome.model.annotations.LightPathAnnotationLink: Many-to-one field ome.model.annotations.LightPathAnnotationLink.parent (ome.model.acquisition.LightPath)
getParent() - Method in class ome.model.annotations.LightSourceAnnotationLink: Many-to-one field ome.model.annotations.LightSourceAnnotationLink.parent (ome.model.acquisition.LightSource)
getParent() - Method in class ome.model.annotations.NamespaceAnnotationLink: Many-to-one field ome.model.annotations.NamespaceAnnotationLink.parent (ome.model.meta.Namespace)
getParent() - Method in class ome.model.annotations.NodeAnnotationLink: Many-to-one field ome.model.annotations.NodeAnnotationLink.parent (ome.model.meta.Node)
getParent() - Method in class ome.model.annotations.ObjectiveAnnotationLink: Many-to-one field ome.model.annotations.ObjectiveAnnotationLink.parent (ome.model.acquisition.Objective)
getParent() - Method in class ome.model.annotations.OriginalFileAnnotationLink: Many-to-one field ome.model.annotations.OriginalFileAnnotationLink.parent (ome.model.core.OriginalFile)
getParent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink: Many-to-one field ome.model.annotations.PlaneInfoAnnotationLink.parent (ome.model.core.PlaneInfo)
getParent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink: Many-to-one field ome.model.annotations.PlateAcquisitionAnnotationLink.parent (ome.model.screen.PlateAcquisition)
getParent() - Method in class ome.model.annotations.PlateAnnotationLink: Many-to-one field ome.model.annotations.PlateAnnotationLink.parent (ome.model.screen.Plate)
getParent() - Method in class ome.model.annotations.ProjectAnnotationLink: Many-to-one field ome.model.annotations.ProjectAnnotationLink.parent (ome.model.containers.Project)
getParent() - Method in class ome.model.annotations.ReagentAnnotationLink: Many-to-one field ome.model.annotations.ReagentAnnotationLink.parent (ome.model.screen.Reagent)
getParent() - Method in class ome.model.annotations.RoiAnnotationLink: Many-to-one field ome.model.annotations.RoiAnnotationLink.parent (ome.model.roi.Roi)
getParent() - Method in class ome.model.annotations.ScreenAnnotationLink: Many-to-one field ome.model.annotations.ScreenAnnotationLink.parent (ome.model.screen.Screen)
getParent() - Method in class ome.model.annotations.SessionAnnotationLink: Many-to-one field ome.model.annotations.SessionAnnotationLink.parent (ome.model.meta.Session)
getParent() - Method in class ome.model.annotations.ShapeAnnotationLink: Many-to-one field ome.model.annotations.ShapeAnnotationLink.parent (ome.model.roi.Shape)
getParent() - Method in class ome.model.annotations.WellAnnotationLink: Many-to-one field ome.model.annotations.WellAnnotationLink.parent (ome.model.screen.Well)
getParent() - Method in class ome.model.containers.DatasetImageLink: Many-to-one field ome.model.containers.DatasetImageLink.parent (ome.model.containers.Dataset)
getParent() - Method in class ome.model.containers.FolderImageLink: Many-to-one field ome.model.containers.FolderImageLink.parent (ome.model.containers.Folder)
getParent() - Method in class ome.model.containers.FolderRoiLink: Many-to-one field ome.model.containers.FolderRoiLink.parent (ome.model.containers.Folder)
getParent() - Method in class ome.model.containers.ProjectDatasetLink: Many-to-one field ome.model.containers.ProjectDatasetLink.parent (ome.model.containers.Project)
getParent() - Method in class ome.model.core.PixelsOriginalFileMap: Many-to-one field ome.model.core.PixelsOriginalFileMap.parent (ome.model.core.OriginalFile)
getParent() - Method in class ome.model.fs.FilesetJobLink: Many-to-one field ome.model.fs.FilesetJobLink.parent (ome.model.fs.Fileset)
getParent() - Method in interface ome.model.ILink
getParent() - Method in class ome.model.jobs.JobOriginalFileLink: Many-to-one field ome.model.jobs.JobOriginalFileLink.parent (ome.model.jobs.Job)
getParent() - Method in class ome.model.meta.GroupExperimenterMap: Many-to-one field ome.model.meta.GroupExperimenterMap.parent (ome.model.meta.ExperimenterGroup)
getParent() - Method in class ome.model.meta.ShareMember: Many-to-one field ome.model.meta.ShareMember.parent (ome.model.meta.Share)
getParent() - Method in class ome.model.screen.ScreenPlateLink: Many-to-one field ome.model.screen.ScreenPlateLink.parent (ome.model.screen.Screen)
getParent() - Method in class ome.model.screen.WellReagentLink: Many-to-one field ome.model.screen.WellReagentLink.parent (ome.model.screen.Well)
getParentFolder() - Method in class ome.model.containers.Folder: Many-to-one field ome.model.containers.Folder.parentFolder (ome.model.containers.Folder)
getPartial() - Method in class ome.model.core.Image: Simple field ome.model.core.Image.partial (java.lang.Boolean)
getPasswordHash(Long) - Method in interface ome.util.SqlAction
getPasswordHash(Long) - Method in class ome.util.SqlAction.Impl
getPath() - Method in class ome.model.acquisition.OTF: Simple field ome.model.acquisition.OTF.path (java.lang.String)
getPath() - Method in class ome.model.core.OriginalFile: Simple field ome.model.core.OriginalFile.path (java.lang.String)
getPerm1() - Method in class ome.model.internal.Permissions
getPermissions() - Method in class ome.model.acquisition.Detector.Details
getPermissions() - Method in class ome.model.acquisition.DetectorSettings.Details
getPermissions() - Method in class ome.model.acquisition.Dichroic.Details
getPermissions() - Method in class ome.model.acquisition.Filter.Details
getPermissions() - Method in class ome.model.acquisition.FilterSet.Details
getPermissions() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
getPermissions() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
getPermissions() - Method in class ome.model.acquisition.ImagingEnvironment.Details
getPermissions() - Method in class ome.model.acquisition.Instrument.Details
getPermissions() - Method in class ome.model.acquisition.LightPath.Details
getPermissions() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
getPermissions() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
getPermissions() - Method in class ome.model.acquisition.LightSettings.Details
getPermissions() - Method in class ome.model.acquisition.LightSource.Details
getPermissions() - Method in class ome.model.acquisition.Microscope.Details
getPermissions() - Method in class ome.model.acquisition.Objective.Details
getPermissions() - Method in class ome.model.acquisition.ObjectiveSettings.Details
getPermissions() - Method in class ome.model.acquisition.OTF.Details
getPermissions() - Method in class ome.model.acquisition.StageLabel.Details
getPermissions() - Method in class ome.model.acquisition.TransmittanceRange.Details
getPermissions() - Method in class ome.model.annotations.Annotation.Details
getPermissions() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.FilterAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.FolderAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.ImageAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.NodeAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.PlateAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.RoiAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.SessionAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
getPermissions() - Method in class ome.model.annotations.WellAnnotationLink.Details
getPermissions() - Method in class ome.model.containers.Dataset.Details
getPermissions() - Method in class ome.model.containers.DatasetImageLink.Details
getPermissions() - Method in class ome.model.containers.Folder.Details
getPermissions() - Method in class ome.model.containers.FolderImageLink.Details
getPermissions() - Method in class ome.model.containers.FolderRoiLink.Details
getPermissions() - Method in class ome.model.containers.Project.Details
getPermissions() - Method in class ome.model.containers.ProjectDatasetLink.Details
getPermissions() - Method in class ome.model.core.Channel.Details
getPermissions() - Method in class ome.model.core.Image.Details
getPermissions() - Method in class ome.model.core.LogicalChannel.Details
getPermissions() - Method in class ome.model.core.OriginalFile.Details
getPermissions() - Method in class ome.model.core.Pixels.Details
getPermissions() - Method in class ome.model.core.PixelsOriginalFileMap.Details
getPermissions() - Method in class ome.model.core.PlaneInfo.Details
getPermissions() - Method in class ome.model.display.ChannelBinding.Details
getPermissions() - Method in class ome.model.display.CodomainMapContext.Details
getPermissions() - Method in class ome.model.display.ProjectionDef.Details
getPermissions() - Method in class ome.model.display.QuantumDef.Details
getPermissions() - Method in class ome.model.display.RenderingDef.Details
getPermissions() - Method in class ome.model.display.Thumbnail.Details
getPermissions() - Method in class ome.model.enums.AcquisitionMode.Details
getPermissions() - Method in class ome.model.enums.AdminPrivilege.Details
getPermissions() - Method in class ome.model.enums.ArcType.Details
getPermissions() - Method in class ome.model.enums.Binning.Details
getPermissions() - Method in class ome.model.enums.ChecksumAlgorithm.Details
getPermissions() - Method in class ome.model.enums.ContrastMethod.Details
getPermissions() - Method in class ome.model.enums.Correction.Details
getPermissions() - Method in class ome.model.enums.DetectorType.Details
getPermissions() - Method in class ome.model.enums.DimensionOrder.Details
getPermissions() - Method in class ome.model.enums.EventType.Details
getPermissions() - Method in class ome.model.enums.ExperimentType.Details
getPermissions() - Method in class ome.model.enums.Family.Details
getPermissions() - Method in class ome.model.enums.FilamentType.Details
getPermissions() - Method in class ome.model.enums.FilterType.Details
getPermissions() - Method in class ome.model.enums.Format.Details
getPermissions() - Method in class ome.model.enums.Illumination.Details
getPermissions() - Method in class ome.model.enums.Immersion.Details
getPermissions() - Method in class ome.model.enums.LaserMedium.Details
getPermissions() - Method in class ome.model.enums.LaserType.Details
getPermissions() - Method in class ome.model.enums.Medium.Details
getPermissions() - Method in class ome.model.enums.MicrobeamManipulationType.Details
getPermissions() - Method in class ome.model.enums.MicroscopeType.Details
getPermissions() - Method in class ome.model.enums.PhotometricInterpretation.Details
getPermissions() - Method in class ome.model.enums.PixelsType.Details
getPermissions() - Method in class ome.model.enums.ProjectionAxis.Details
getPermissions() - Method in class ome.model.enums.ProjectionType.Details
getPermissions() - Method in class ome.model.enums.Pulse.Details
getPermissions() - Method in class ome.model.enums.RenderingModel.Details
getPermissions() - Method in class ome.model.experiment.Experiment.Details
getPermissions() - Method in class ome.model.experiment.MicrobeamManipulation.Details
getPermissions() - Method in class ome.model.fs.Fileset.Details
getPermissions() - Method in class ome.model.fs.FilesetEntry.Details
getPermissions() - Method in class ome.model.fs.FilesetJobLink.Details
getPermissions() - Method in interface ome.model.IDetails
getPermissions() - Method in class ome.model.internal.Details: Permissions is a component embedded into the Details component.
getPermissions() - Method in class ome.model.internal.Link.Details
getPermissions() - Method in class ome.model.jobs.Job.Details
getPermissions() - Method in class ome.model.jobs.JobOriginalFileLink.Details
getPermissions() - Method in class ome.model.jobs.JobStatus.Details
getPermissions() - Method in class ome.model.meta.DBPatch.Details
getPermissions() - Method in class ome.model.meta.Event.Details
getPermissions() - Method in class ome.model.meta.EventLog.Details
getPermissions() - Method in class ome.model.meta.Experimenter.Details
getPermissions() - Method in class ome.model.meta.ExperimenterGroup.Details
getPermissions() - Method in class ome.model.meta.ExternalInfo.Details
getPermissions() - Method in class ome.model.meta.GroupExperimenterMap.Details
getPermissions() - Method in class ome.model.meta.Namespace.Details
getPermissions() - Method in class ome.model.meta.Node.Details
getPermissions() - Method in class ome.model.meta.Session.Details
getPermissions() - Method in class ome.model.meta.ShareMember.Details
getPermissions() - Method in class ome.model.roi.AffineTransform.Details
getPermissions() - Method in class ome.model.roi.Roi.Details
getPermissions() - Method in class ome.model.roi.Shape.Details
getPermissions() - Method in class ome.model.screen.Plate.Details
getPermissions() - Method in class ome.model.screen.PlateAcquisition.Details
getPermissions() - Method in class ome.model.screen.Reagent.Details
getPermissions() - Method in class ome.model.screen.Screen.Details
getPermissions() - Method in class ome.model.screen.ScreenPlateLink.Details
getPermissions() - Method in class ome.model.screen.Well.Details
getPermissions() - Method in class ome.model.screen.WellReagentLink.Details
getPermissions() - Method in class ome.model.screen.WellSample.Details
getPermissions() - Method in class ome.model.stats.StatsInfo.Details
getPhotometricInterpretation() - Method in class ome.model.core.LogicalChannel: Many-to-one field ome.model.core.LogicalChannel.photometricInterpretation (ome.model.enums.PhotometricInterpretation)
getPhysicalSizeX() - Method in class ome.model.core.Pixels: Enum-mapped unit-based field ome.model.core.Pixels.physicalSizeX (ome.model.units.Length)
getPhysicalSizeY() - Method in class ome.model.core.Pixels: Enum-mapped unit-based field ome.model.core.Pixels.physicalSizeY (ome.model.units.Length)
getPhysicalSizeZ() - Method in class ome.model.core.Pixels: Enum-mapped unit-based field ome.model.core.Pixels.physicalSizeZ (ome.model.units.Length)
getPinHoleSize() - Method in class ome.model.core.LogicalChannel: Enum-mapped unit-based field ome.model.core.LogicalChannel.pinHoleSize (ome.model.units.Length)
getPixels() - Method in class ome.model.core.Channel: Many-to-one field ome.model.core.Channel.pixels (ome.model.core.Pixels)
getPixels() - Method in class ome.model.core.Image: returns pixels .
getPixels() - Method in class ome.model.core.PlaneInfo: Many-to-one field ome.model.core.PlaneInfo.pixels (ome.model.core.Pixels)
getPixels() - Method in class ome.model.display.RenderingDef: Many-to-one field ome.model.display.RenderingDef.pixels (ome.model.core.Pixels)
getPixels() - Method in class ome.model.display.Thumbnail: Many-to-one field ome.model.display.Thumbnail.pixels (ome.model.core.Pixels)
getPixels() - Method in class ome.model.roi.Mask: Many-to-one field ome.model.roi.Mask.pixels (ome.model.core.Pixels)
getPixels(int) - Method in class ome.model.core.Image: Gets the ome.model.core.Pixels at the given index.
getPixelsFileMaps() - Method in class ome.model.core.OriginalFile: returns pixelsFileMaps .
getPixelsFileMaps() - Method in class ome.model.core.Pixels: returns pixelsFileMaps .
getPixelsFileMapsCountPerOwner() - Method in class ome.model.core.OriginalFile: If fetched, returns the count(*) of ome.model.core.PixelsOriginalFileMap that a user has.
getPixelsFileMapsCountPerOwner() - Method in class ome.model.core.Pixels: If fetched, returns the count(*) of ome.model.core.PixelsOriginalFileMap that a user has.
getPixelsId() - Method in exception ome.conditions.MissingPyramidException
getPixelsNamePathRepo(long) - Method in class ome.util.actions.PostgresSqlAction
getPixelsNamePathRepo(long) - Method in interface ome.util.SqlAction: Retrieves the name, path and repo for the given pixels set.
getPixelsType() - Method in class ome.model.acquisition.OTF: Many-to-one field ome.model.acquisition.OTF.pixelsType (ome.model.enums.PixelsType)
getPixelsType() - Method in class ome.model.core.Pixels: Many-to-one field ome.model.core.Pixels.pixelsType (ome.model.enums.PixelsType)
getPixelValue(int) - Method in class ome.util.PixelData: Returns the pixel intensity value of the pixel at a given offset within the backing buffer.
getPixelValueDirect(int) - Method in class ome.util.PixelData: Returns the pixel intensity value of the pixel at a given offset within the backing buffer.
getPlaneInfo() - Method in class ome.model.core.Pixels: returns planeInfo .
getPlanePrevious() - Method in class ome.model.display.PlaneSlicingContext: Simple field ome.model.display.PlaneSlicingContext.planePrevious (java.lang.Integer)
getPlaneSelected() - Method in class ome.model.display.PlaneSlicingContext: Simple field ome.model.display.PlaneSlicingContext.planeSelected (java.lang.Integer)
getPlate() - Method in class ome.model.screen.PlateAcquisition: Many-to-one field ome.model.screen.PlateAcquisition.plate (ome.model.screen.Plate)
getPlate() - Method in class ome.model.screen.Well: Many-to-one field ome.model.screen.Well.plate (ome.model.screen.Plate)
getPlateAcquisition() - Method in class ome.model.screen.WellSample: Many-to-one field ome.model.screen.WellSample.plateAcquisition (ome.model.screen.PlateAcquisition)
getPlateAcquisitions() - Method in class ome.model.screen.Plate: returns plateAcquisitions .
getPlateLinks() - Method in class ome.model.screen.Screen: returns plateLinks .
getPlateLinksCountPerOwner() - Method in class ome.model.screen.Screen: If fetched, returns the count(*) of ome.model.screen.ScreenPlateLink that a user has.
getPockelCell() - Method in class ome.model.acquisition.Laser: Simple field ome.model.acquisition.Laser.pockelCell (java.lang.Boolean)
getPockelCellSetting() - Method in class ome.model.core.LogicalChannel: Simple field ome.model.core.LogicalChannel.pockelCellSetting (java.lang.Integer)
getPoints() - Method in class ome.model.roi.Polygon: Simple field ome.model.roi.Polygon.points (java.lang.String)
getPoints() - Method in class ome.model.roi.Polyline: Simple field ome.model.roi.Polyline.points (java.lang.String)
getPositionX() - Method in class ome.model.acquisition.StageLabel: Enum-mapped unit-based field ome.model.acquisition.StageLabel.positionX (ome.model.units.Length)
getPositionX() - Method in class ome.model.core.PlaneInfo: Enum-mapped unit-based field ome.model.core.PlaneInfo.positionX (ome.model.units.Length)
getPositionY() - Method in class ome.model.acquisition.StageLabel: Enum-mapped unit-based field ome.model.acquisition.StageLabel.positionY (ome.model.units.Length)
getPositionY() - Method in class ome.model.core.PlaneInfo: Enum-mapped unit-based field ome.model.core.PlaneInfo.positionY (ome.model.units.Length)
getPositionZ() - Method in class ome.model.acquisition.StageLabel: Enum-mapped unit-based field ome.model.acquisition.StageLabel.positionZ (ome.model.units.Length)
getPositionZ() - Method in class ome.model.core.PlaneInfo: Enum-mapped unit-based field ome.model.core.PlaneInfo.positionZ (ome.model.units.Length)
getPosX() - Method in class ome.model.screen.WellSample: Enum-mapped unit-based field ome.model.screen.WellSample.posX (ome.model.units.Length)
getPosY() - Method in class ome.model.screen.WellSample: Enum-mapped unit-based field ome.model.screen.WellSample.posY (ome.model.units.Length)
getPower() - Method in class ome.model.acquisition.LightSource: Enum-mapped unit-based field ome.model.acquisition.LightSource.power (ome.model.units.Power)
getPreviousPatch() - Method in class ome.model.meta.DBPatch: Simple field ome.model.meta.DBPatch.previousPatch (java.lang.Integer)
getPreviousVersion() - Method in class ome.model.meta.DBPatch: Simple field ome.model.meta.DBPatch.previousVersion (java.lang.String)
getPrimaryChannel() - Method in class ome.model.core.Pixels: Gets the first element of channels which can be interpreted as the primary or default element in some situations.
getPrimaryChannelBinding() - Method in class ome.model.display.RenderingDef: Gets the first element of waveRendering which can be interpreted as the primary or default element in some situations.
getPrimaryCodomainMapContext() - Method in class ome.model.display.ChannelBinding: Gets the first element of spatialDomainEnhancement which can be interpreted as the primary or default element in some situations.
getPrimaryFilesetEntry() - Method in class ome.model.fs.Fileset: Gets the first element of usedFiles which can be interpreted as the primary or default element in some situations.
getPrimaryFilesetJobLink() - Method in class ome.model.fs.Fileset: Gets the first element of jobLinks which can be interpreted as the primary or default element in some situations.
getPrimaryGroupExperimenterMap() - Method in class ome.model.meta.Experimenter: Gets the first element of groupExperimenterMap which can be interpreted as the primary or default element in some situations.
getPrimaryLightPathExcitationFilterLink() - Method in class ome.model.acquisition.LightPath: Gets the first element of excitationFilterLink which can be interpreted as the primary or default element in some situations.
getPrimaryPixels() - Method in class ome.model.core.Image: Gets the first element of pixels which can be interpreted as the primary or default element in some situations.
getPrimaryProjectionDef() - Method in class ome.model.display.RenderingDef: Gets the first element of projections which can be interpreted as the primary or default element in some situations.
getPrimaryShape() - Method in class ome.model.roi.Roi: Gets the first element of shapes which can be interpreted as the primary or default element in some situations.
getPrimaryWellSample() - Method in class ome.model.screen.Well: Gets the first element of wellSamples which can be interpreted as the primary or default element in some situations.
getProjectionDef(int) - Method in class ome.model.display.RenderingDef: Gets the ome.model.display.ProjectionDef at the given index.
getProjections() - Method in class ome.model.display.RenderingDef: returns projections .
getProjectLinks() - Method in class ome.model.containers.Dataset: returns projectLinks .
getProjectLinksCountPerOwner() - Method in class ome.model.containers.Dataset: If fetched, returns the count(*) of ome.model.containers.ProjectDatasetLink that a user has.
getProtocolDescription() - Method in class ome.model.screen.Screen: Simple field ome.model.screen.Screen.protocolDescription (java.lang.String)
getProtocolIdentifier() - Method in class ome.model.screen.Screen: Simple field ome.model.screen.Screen.protocolIdentifier (java.lang.String)
getPulse() - Method in class ome.model.acquisition.Laser: Many-to-one field ome.model.acquisition.Laser.pulse (ome.model.enums.Pulse)
getPump() - Method in class ome.model.acquisition.Laser: Many-to-one field ome.model.acquisition.Laser.pump (ome.model.acquisition.LightSource)
getQuantityClass() - Method in class ome.model.units.GenericEnumType
getQuantization() - Method in class ome.model.display.RenderingDef: Many-to-one field ome.model.display.RenderingDef.quantization (ome.model.display.QuantumDef)
getRadiusX() - Method in class ome.model.roi.Ellipse: Simple field ome.model.roi.Ellipse.radiusX (java.lang.Double)
getRadiusY() - Method in class ome.model.roi.Ellipse: Simple field ome.model.roi.Ellipse.radiusY (java.lang.Double)
getRdf() - Method in class ome.util.RdfPrinter
getReadOutRate() - Method in class ome.model.acquisition.DetectorSettings: Enum-mapped unit-based field ome.model.acquisition.DetectorSettings.readOutRate (ome.model.units.Frequency)
getReagentIdentifier() - Method in class ome.model.screen.Reagent: Simple field ome.model.screen.Reagent.reagentIdentifier (java.lang.String)
getReagentLinks() - Method in class ome.model.screen.Well: returns reagentLinks .
getReagentLinksCountPerOwner() - Method in class ome.model.screen.Well: If fetched, returns the count(*) of ome.model.screen.WellReagentLink that a user has.
getReagents() - Method in class ome.model.screen.Screen: returns reagents .
getReagentSetDescription() - Method in class ome.model.screen.Screen: Simple field ome.model.screen.Screen.reagentSetDescription (java.lang.String)
getReagentSetIdentifier() - Method in class ome.model.screen.Screen: Simple field ome.model.screen.Screen.reagentSetIdentifier (java.lang.String)
getRed() - Method in class ome.model.core.Channel: Simple field ome.model.core.Channel.red (java.lang.Integer)
getRed() - Method in class ome.model.display.ChannelBinding: Simple field ome.model.display.ChannelBinding.red (java.lang.Integer)
getRed() - Method in class ome.model.screen.Well: Simple field ome.model.screen.Well.red (java.lang.Integer)
getRef() - Method in class ome.model.display.Thumbnail: Simple field ome.model.display.Thumbnail.ref (java.lang.String)
getRefractiveIndex() - Method in class ome.model.acquisition.ObjectiveSettings: Simple field ome.model.acquisition.ObjectiveSettings.refractiveIndex (java.lang.Double)
getRelatedTo() - Method in class ome.model.core.Pixels: Deprecated.
getRenderingDef() - Method in class ome.model.display.ChannelBinding: Many-to-one field ome.model.display.ChannelBinding.renderingDef (ome.model.display.RenderingDef)
getRenderingDef() - Method in class ome.model.display.ProjectionDef: Many-to-one field ome.model.display.ProjectionDef.renderingDef (ome.model.display.RenderingDef)
getRepetitionRate() - Method in class ome.model.acquisition.Laser: Enum-mapped unit-based field ome.model.acquisition.Laser.repetitionRate (ome.model.units.Frequency)
getReplacement() - Method in class ome.model.internal.GraphHolder: a replacement is a managed entity instance which has the same primary key as this instance.
getRepo() - Method in class ome.model.core.OriginalFile: Simple field ome.model.core.OriginalFile.repo (java.lang.String)
getRestrictions() - Method in class ome.model.internal.Permissions
getReverse() - Method in class ome.model.display.ReverseIntensityContext: Simple field ome.model.display.ReverseIntensityContext.reverse (java.lang.Boolean)
getRoi() - Method in class ome.model.roi.Shape: Many-to-one field ome.model.roi.Shape.roi (ome.model.roi.Roi)
getRoiLinks() - Method in class ome.model.containers.Folder: returns roiLinks .
getRoiLinksCountPerOwner() - Method in class ome.model.containers.Folder: If fetched, returns the count(*) of ome.model.containers.FolderRoiLink that a user has.
getRois() - Method in class ome.model.core.Image: returns rois .
getRow() - Method in class ome.model.screen.Well: Simple field ome.model.screen.Well.row (java.lang.Integer)
getRowNamingConvention() - Method in class ome.model.screen.Plate: Simple field ome.model.screen.Plate.rowNamingConvention (java.lang.String)
getRows() - Method in class ome.model.screen.Plate: Simple field ome.model.screen.Plate.rows (java.lang.Integer)
getSamplesPerPixel() - Method in class ome.model.core.LogicalChannel: Simple field ome.model.core.LogicalChannel.samplesPerPixel (java.lang.Integer)
getScale() - Method in class ome.model.meta.Node: Simple field ome.model.meta.Node.scale (java.lang.Integer)
getScheduledFor() - Method in class ome.model.jobs.Job: Simple field ome.model.jobs.Job.scheduledFor (java.sql.Timestamp)
getScreen() - Method in class ome.model.screen.Reagent: Many-to-one field ome.model.screen.Reagent.screen (ome.model.screen.Screen)
getScreenLinks() - Method in class ome.model.screen.Plate: returns screenLinks .
getScreenLinksCountPerOwner() - Method in class ome.model.screen.Plate: If fetched, returns the count(*) of ome.model.screen.ScreenPlateLink that a user has.
getSerialNumber() - Method in class ome.model.acquisition.Detector: Simple field ome.model.acquisition.Detector.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.Dichroic: Simple field ome.model.acquisition.Dichroic.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.Filter: Simple field ome.model.acquisition.Filter.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.FilterSet: Simple field ome.model.acquisition.FilterSet.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.LightSource: Simple field ome.model.acquisition.LightSource.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.Microscope: Simple field ome.model.acquisition.Microscope.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.Objective: Simple field ome.model.acquisition.Objective.serialNumber (java.lang.String)
getSeries() - Method in class ome.model.core.Image: Simple field ome.model.core.Image.series (java.lang.Integer)
getSession() - Method in class ome.model.meta.Event: Many-to-one field ome.model.meta.Event.session (ome.model.meta.Session)
getSessions() - Method in class ome.model.meta.Node: returns sessions .
getSettings() - Method in class ome.model.core.Pixels: returns settings .
getSha1() - Method in class ome.model.core.Pixels: Simple field ome.model.core.Pixels.sha1 (java.lang.String)
getShape(int) - Method in class ome.model.roi.Roi: Gets the ome.model.roi.Shape at the given index.
getShapeIds(long) - Method in class ome.util.actions.PostgresSqlAction
getShapeIds(long) - Method in interface ome.util.SqlAction
getShapes() - Method in class ome.model.roi.Roi: returns shapes .
getShareData(List<Long>) - Method in interface ome.util.SqlAction: Returns a map of Share ID to Share data blob.
getShareData(List<Long>) - Method in class ome.util.SqlAction.Impl
getSignificantBits() - Method in class ome.model.core.Pixels: Simple field ome.model.core.Pixels.significantBits (java.lang.Integer)
getSize() - Method in class ome.model.core.OriginalFile: Simple field ome.model.core.OriginalFile.size (java.lang.Long)
getSizeC() - Method in class ome.model.core.Pixels: Simple field ome.model.core.Pixels.sizeC (java.lang.Integer)
getSizeT() - Method in class ome.model.core.Pixels: Simple field ome.model.core.Pixels.sizeT (java.lang.Integer)
getSizeX() - Method in class ome.model.acquisition.OTF: Simple field ome.model.acquisition.OTF.sizeX (java.lang.Integer)
getSizeX() - Method in class ome.model.core.Pixels: Simple field ome.model.core.Pixels.sizeX (java.lang.Integer)
getSizeX() - Method in class ome.model.display.Thumbnail: Simple field ome.model.display.Thumbnail.sizeX (java.lang.Integer)
getSizeY() - Method in class ome.model.acquisition.OTF: Simple field ome.model.acquisition.OTF.sizeY (java.lang.Integer)
getSizeY() - Method in class ome.model.core.Pixels: Simple field ome.model.core.Pixels.sizeY (java.lang.Integer)
getSizeY() - Method in class ome.model.display.Thumbnail: Simple field ome.model.display.Thumbnail.sizeY (java.lang.Integer)
getSizeZ() - Method in class ome.model.core.Pixels: Simple field ome.model.core.Pixels.sizeZ (java.lang.Integer)
getSource() - Method in class ome.model.roi.Roi: Many-to-one field ome.model.roi.Roi.source (ome.model.core.OriginalFile)
getSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding: returns spatialDomainEnhancement .
getStageLabel() - Method in class ome.model.core.Image: Many-to-one field ome.model.core.Image.stageLabel (ome.model.acquisition.StageLabel)
getStarted() - Method in class ome.model.jobs.Job: Simple field ome.model.jobs.Job.started (java.sql.Timestamp)
getStarted() - Method in class ome.model.meta.Session: Simple field ome.model.meta.Session.started (java.sql.Timestamp)
getStartPlane() - Method in class ome.model.display.ProjectionDef: Simple field ome.model.display.ProjectionDef.startPlane (java.lang.Integer)
getStartTime() - Method in class ome.model.screen.PlateAcquisition: Simple field ome.model.screen.PlateAcquisition.startTime (java.sql.Timestamp)
getStartTime() - Method in class ome.parameters.Parameters
getStatsInfo() - Method in class ome.model.core.Channel: Many-to-one field ome.model.core.Channel.statsInfo (ome.model.stats.StatsInfo)
getStatus() - Method in class ome.model.jobs.Job: Many-to-one field ome.model.jobs.Job.status (ome.model.jobs.JobStatus)
getStatus() - Method in class ome.model.meta.Event: Simple field ome.model.meta.Event.status (java.lang.String)
getStatus() - Method in class ome.model.screen.Plate: Simple field ome.model.screen.Plate.status (java.lang.String)
getStatus() - Method in class ome.model.screen.Well: Simple field ome.model.screen.Well.status (java.lang.String)
getStepping() - Method in class ome.model.display.ProjectionDef: Simple field ome.model.display.ProjectionDef.stepping (java.lang.Integer)
getString(String) - Static method in class ome.util.actions.PsqlStrings
getStrokeColor() - Method in class ome.model.roi.Shape: Simple field ome.model.roi.Shape.strokeColor (java.lang.Integer)
getStrokeDashArray() - Method in class ome.model.roi.Shape: Simple field ome.model.roi.Shape.strokeDashArray (java.lang.String)
getStrokeWidth() - Method in class ome.model.roi.Shape: Enum-mapped unit-based field ome.model.roi.Shape.strokeWidth (ome.model.units.Length)
getSubmitted() - Method in class ome.model.jobs.Job: Simple field ome.model.jobs.Job.submitted (java.sql.Timestamp)
getSudoer() - Method in class ome.model.meta.Session: Many-to-one field ome.model.meta.Session.sudoer (ome.model.meta.Experimenter)
getSymbol() - Method in enum ome.model.enums.UnitsElectricPotential
getSymbol() - Method in enum ome.model.enums.UnitsFrequency
getSymbol() - Method in enum ome.model.enums.UnitsLength
getSymbol() - Method in enum ome.model.enums.UnitsPower
getSymbol() - Method in enum ome.model.enums.UnitsPressure
getSymbol() - Method in enum ome.model.enums.UnitsTemperature
getSymbol() - Method in enum ome.model.enums.UnitsTime
getSymbol() - Method in interface ome.model.units.UnitEnum
getTemperature() - Method in class ome.model.acquisition.ImagingEnvironment: Enum-mapped unit-based field ome.model.acquisition.ImagingEnvironment.temperature (ome.model.units.Temperature)
getTemplatePrefix() - Method in class ome.model.fs.Fileset: Simple field ome.model.fs.Fileset.templatePrefix (java.lang.String)
getTermValue() - Method in class ome.model.annotations.TermAnnotation: Simple field ome.model.annotations.TermAnnotation.termValue (java.lang.String)
getTextValue() - Method in class ome.model.annotations.TextAnnotation: Simple field ome.model.annotations.TextAnnotation.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Ellipse: Simple field ome.model.roi.Ellipse.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Label: Simple field ome.model.roi.Label.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Line: Simple field ome.model.roi.Line.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Mask: Simple field ome.model.roi.Mask.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Path: Deprecated.

Simple field ome.model.roi.Path.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Point: Simple field ome.model.roi.Point.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Polygon: Simple field ome.model.roi.Polygon.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Polyline: Simple field ome.model.roi.Polyline.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Rectangle: Simple field ome.model.roi.Rectangle.textValue (java.lang.String)
getTheC() - Method in class ome.model.core.PlaneInfo: Simple field ome.model.core.PlaneInfo.theC (java.lang.Integer)
getTheC() - Method in class ome.model.roi.Shape: Simple field ome.model.roi.Shape.theC (java.lang.Integer)
getTheT() - Method in class ome.model.core.PlaneInfo: Simple field ome.model.core.PlaneInfo.theT (java.lang.Integer)
getTheT() - Method in class ome.model.roi.Shape: Simple field ome.model.roi.Shape.theT (java.lang.Integer)
getTheZ() - Method in class ome.model.core.PlaneInfo: Simple field ome.model.core.PlaneInfo.theZ (java.lang.Integer)
getTheZ() - Method in class ome.model.roi.Shape: Simple field ome.model.roi.Shape.theZ (java.lang.Integer)
getThreadIdentifier() - Static method in class ome.util.Utils: Returns a String which can be used to correlate log messages.
getThumbnails() - Method in class ome.model.core.Pixels: returns thumbnails .
getTime() - Method in class ome.model.meta.Event: Simple field ome.model.meta.Event.time (java.sql.Timestamp)
getTimeIncrement() - Method in class ome.model.core.Pixels: Enum-mapped unit-based field ome.model.core.Pixels.timeIncrement (ome.model.units.Time)
getTimepoint() - Method in class ome.model.screen.WellSample: Simple field ome.model.screen.WellSample.timepoint (java.sql.Timestamp)
getTimeToIdle() - Method in class ome.model.meta.Session: Simple field ome.model.meta.Session.timeToIdle (java.lang.Long)
getTimeToLive() - Method in class ome.model.meta.Session: Simple field ome.model.meta.Session.timeToLive (java.lang.Long)
getTimeValue() - Method in class ome.model.annotations.TimestampAnnotation: Simple field ome.model.annotations.TimestampAnnotation.timeValue (java.sql.Timestamp)
getTransform() - Method in class ome.model.roi.Shape: Many-to-one field ome.model.roi.Shape.transform (ome.model.roi.AffineTransform)
getTransmittance() - Method in class ome.model.acquisition.TransmittanceRange: Simple field ome.model.acquisition.TransmittanceRange.transmittance (java.lang.Double)
getTransmittanceRange() - Method in class ome.model.acquisition.Filter: Many-to-one field ome.model.acquisition.Filter.transmittanceRange (ome.model.acquisition.TransmittanceRange)
getTuneable() - Method in class ome.model.acquisition.Laser: Simple field ome.model.acquisition.Laser.tuneable (java.lang.Boolean)
getType() - Method in class ome.model.acquisition.Arc: Many-to-one field ome.model.acquisition.Arc.type (ome.model.enums.ArcType)
getType() - Method in class ome.model.acquisition.Detector: Many-to-one field ome.model.acquisition.Detector.type (ome.model.enums.DetectorType)
getType() - Method in class ome.model.acquisition.Filament: Many-to-one field ome.model.acquisition.Filament.type (ome.model.enums.FilamentType)
getType() - Method in class ome.model.acquisition.Filter: Many-to-one field ome.model.acquisition.Filter.type (ome.model.enums.FilterType)
getType() - Method in class ome.model.acquisition.Laser: Many-to-one field ome.model.acquisition.Laser.type (ome.model.enums.LaserType)
getType() - Method in class ome.model.acquisition.Microscope: Many-to-one field ome.model.acquisition.Microscope.type (ome.model.enums.MicroscopeType)
getType() - Method in class ome.model.display.ProjectionDef: Many-to-one field ome.model.display.ProjectionDef.type (ome.model.enums.ProjectionType)
getType() - Method in class ome.model.experiment.Experiment: Many-to-one field ome.model.experiment.Experiment.type (ome.model.enums.ExperimentType)
getType() - Method in class ome.model.experiment.MicrobeamManipulation: Many-to-one field ome.model.experiment.MicrobeamManipulation.type (ome.model.enums.MicrobeamManipulationType)
getType() - Method in class ome.model.jobs.Job: Simple field ome.model.jobs.Job.type (java.lang.String)
getType() - Method in class ome.model.meta.Event: Many-to-one field ome.model.meta.Event.type (ome.model.enums.EventType)
getType() - Method in class ome.model.screen.Screen: Simple field ome.model.screen.Screen.type (java.lang.String)
getType() - Method in class ome.model.screen.Well: Simple field ome.model.screen.Well.type (java.lang.String)
getUnit() - Method in class ome.model.units.ElectricPotential: Many-to-one field ome.model.units.ElectricPotential.unit (ome.model.enums.UnitsElectricPotential).
getUnit() - Method in class ome.model.units.Frequency: Many-to-one field ome.model.units.Frequency.unit (ome.model.enums.UnitsFrequency).
getUnit() - Method in class ome.model.units.Length: Many-to-one field ome.model.units.Length.unit (ome.model.enums.UnitsLength).
getUnit() - Method in class ome.model.units.Power: Many-to-one field ome.model.units.Power.unit (ome.model.enums.UnitsPower).
getUnit() - Method in class ome.model.units.Pressure: Many-to-one field ome.model.units.Pressure.unit (ome.model.enums.UnitsPressure).
getUnit() - Method in class ome.model.units.Temperature: Many-to-one field ome.model.units.Temperature.unit (ome.model.enums.UnitsTemperature).
getUnit() - Method in class ome.model.units.Time: Many-to-one field ome.model.units.Time.unit (ome.model.enums.UnitsTime).
getUnit() - Method in interface ome.model.units.Unit
getUp() - Method in class ome.model.meta.Node: Simple field ome.model.meta.Node.up (java.sql.Timestamp)
getUpdateEvent() - Method in class ome.model.acquisition.Detector.Details
getUpdateEvent() - Method in class ome.model.acquisition.DetectorSettings.Details
getUpdateEvent() - Method in class ome.model.acquisition.Dichroic.Details
getUpdateEvent() - Method in class ome.model.acquisition.Filter.Details
getUpdateEvent() - Method in class ome.model.acquisition.FilterSet.Details
getUpdateEvent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
getUpdateEvent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
getUpdateEvent() - Method in class ome.model.acquisition.ImagingEnvironment.Details
getUpdateEvent() - Method in class ome.model.acquisition.Instrument.Details
getUpdateEvent() - Method in class ome.model.acquisition.LightPath.Details
getUpdateEvent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
getUpdateEvent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
getUpdateEvent() - Method in class ome.model.acquisition.LightSettings.Details
getUpdateEvent() - Method in class ome.model.acquisition.LightSource.Details
getUpdateEvent() - Method in class ome.model.acquisition.Microscope.Details
getUpdateEvent() - Method in class ome.model.acquisition.Objective.Details
getUpdateEvent() - Method in class ome.model.acquisition.ObjectiveSettings.Details
getUpdateEvent() - Method in class ome.model.acquisition.OTF.Details
getUpdateEvent() - Method in class ome.model.acquisition.StageLabel.Details
getUpdateEvent() - Method in class ome.model.acquisition.TransmittanceRange.Details
getUpdateEvent() - Method in class ome.model.annotations.Annotation.Details
getUpdateEvent() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.FilterAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.FolderAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.ImageAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.NodeAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.PlateAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.RoiAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.SessionAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.annotations.WellAnnotationLink.Details
getUpdateEvent() - Method in class ome.model.containers.Dataset.Details
getUpdateEvent() - Method in class ome.model.containers.DatasetImageLink.Details
getUpdateEvent() - Method in class ome.model.containers.Folder.Details
getUpdateEvent() - Method in class ome.model.containers.FolderImageLink.Details
getUpdateEvent() - Method in class ome.model.containers.FolderRoiLink.Details
getUpdateEvent() - Method in class ome.model.containers.Project.Details
getUpdateEvent() - Method in class ome.model.containers.ProjectDatasetLink.Details
getUpdateEvent() - Method in class ome.model.core.Channel.Details
getUpdateEvent() - Method in class ome.model.core.Image.Details
getUpdateEvent() - Method in class ome.model.core.LogicalChannel.Details
getUpdateEvent() - Method in class ome.model.core.OriginalFile.Details
getUpdateEvent() - Method in class ome.model.core.Pixels.Details
getUpdateEvent() - Method in class ome.model.core.PixelsOriginalFileMap.Details
getUpdateEvent() - Method in class ome.model.core.PlaneInfo.Details
getUpdateEvent() - Method in class ome.model.display.ChannelBinding.Details
getUpdateEvent() - Method in class ome.model.display.CodomainMapContext.Details
getUpdateEvent() - Method in class ome.model.display.ProjectionDef.Details
getUpdateEvent() - Method in class ome.model.display.QuantumDef.Details
getUpdateEvent() - Method in class ome.model.display.RenderingDef.Details
getUpdateEvent() - Method in class ome.model.display.Thumbnail.Details
getUpdateEvent() - Method in class ome.model.experiment.Experiment.Details
getUpdateEvent() - Method in class ome.model.experiment.MicrobeamManipulation.Details
getUpdateEvent() - Method in class ome.model.fs.Fileset.Details
getUpdateEvent() - Method in class ome.model.fs.FilesetEntry.Details
getUpdateEvent() - Method in class ome.model.fs.FilesetJobLink.Details
getUpdateEvent() - Method in class ome.model.internal.Details
getUpdateEvent() - Method in class ome.model.internal.Link.Details
getUpdateEvent() - Method in class ome.model.jobs.Job.Details
getUpdateEvent() - Method in class ome.model.jobs.JobOriginalFileLink.Details
getUpdateEvent() - Method in class ome.model.meta.ExternalInfo.Details: Overrides Details.getUpdateEvent() to always return null.
getUpdateEvent() - Method in class ome.model.roi.AffineTransform.Details
getUpdateEvent() - Method in class ome.model.roi.Roi.Details
getUpdateEvent() - Method in class ome.model.roi.Shape.Details
getUpdateEvent() - Method in class ome.model.screen.Plate.Details
getUpdateEvent() - Method in class ome.model.screen.PlateAcquisition.Details
getUpdateEvent() - Method in class ome.model.screen.Reagent.Details
getUpdateEvent() - Method in class ome.model.screen.Screen.Details
getUpdateEvent() - Method in class ome.model.screen.ScreenPlateLink.Details
getUpdateEvent() - Method in class ome.model.screen.Well.Details
getUpdateEvent() - Method in class ome.model.screen.WellReagentLink.Details
getUpdateEvent() - Method in class ome.model.screen.WellSample.Details
getUpdateEvent() - Method in class ome.model.stats.StatsInfo.Details
getUpperLimit() - Method in class ome.model.display.PlaneSlicingContext: Simple field ome.model.display.PlaneSlicingContext.upperLimit (java.lang.Integer)
getUsedFiles() - Method in class ome.model.fs.Fileset: returns usedFiles .
getUserAgent() - Method in class ome.model.meta.Session: Simple field ome.model.meta.Session.userAgent (java.lang.String)
getUserEmailByOmeName(String) - Method in interface ome.util.SqlAction: Load the email address for the given user.
getUserEmailByOmeName(String) - Method in class ome.util.SqlAction.Impl
getUserEmailsByGroup(long) - Method in interface ome.util.SqlAction: Load all the non-empty email addresses for users in a given group.
getUserEmailsByGroup(long) - Method in class ome.util.SqlAction.Impl
getUserGroups(String) - Method in interface ome.util.SqlAction
getUserGroups(String) - Method in class ome.util.SqlAction.Impl
getUserId(String) - Method in interface ome.util.SqlAction: Get the user's ID
getUserId(String) - Method in class ome.util.SqlAction.Impl
getUserIP() - Method in class ome.model.meta.Session: Deprecated.
getUsername() - Method in class ome.model.jobs.Job: Simple field ome.model.jobs.Job.username (java.lang.String)
getUsername(long) - Method in interface ome.util.SqlAction: Get the user's name
getUsername(long) - Method in class ome.util.SqlAction.Impl
getUserPrettyNameByOmeName(String) - Method in interface ome.util.SqlAction: Load the pretty name for the given user.
getUserPrettyNameByOmeName(String) - Method in class ome.util.SqlAction.Impl
getUuid() - Method in class ome.model.meta.ExternalInfo: Simple field ome.model.meta.ExternalInfo.uuid (java.lang.String)
getUuid() - Method in class ome.model.meta.Node: Simple field ome.model.meta.Node.uuid (java.lang.String)
getUuid() - Method in class ome.model.meta.Session: Simple field ome.model.meta.Session.uuid (java.lang.String)
getValue() - Method in class ome.model.enums.AcquisitionMode: Simple field ome.model.enums.AcquisitionMode.value (java.lang.String)
getValue() - Method in class ome.model.enums.AdminPrivilege: Simple field ome.model.enums.AdminPrivilege.value (java.lang.String)
getValue() - Method in class ome.model.enums.ArcType: Simple field ome.model.enums.ArcType.value (java.lang.String)
getValue() - Method in class ome.model.enums.Binning: Simple field ome.model.enums.Binning.value (java.lang.String)
getValue() - Method in class ome.model.enums.ChecksumAlgorithm: Simple field ome.model.enums.ChecksumAlgorithm.value (java.lang.String)
getValue() - Method in class ome.model.enums.ContrastMethod: Simple field ome.model.enums.ContrastMethod.value (java.lang.String)
getValue() - Method in class ome.model.enums.Correction: Simple field ome.model.enums.Correction.value (java.lang.String)
getValue() - Method in class ome.model.enums.DetectorType: Simple field ome.model.enums.DetectorType.value (java.lang.String)
getValue() - Method in class ome.model.enums.DimensionOrder: Simple field ome.model.enums.DimensionOrder.value (java.lang.String)
getValue() - Method in class ome.model.enums.EventType: Simple field ome.model.enums.EventType.value (java.lang.String)
getValue() - Method in class ome.model.enums.ExperimentType: Simple field ome.model.enums.ExperimentType.value (java.lang.String)
getValue() - Method in class ome.model.enums.Family: Simple field ome.model.enums.Family.value (java.lang.String)
getValue() - Method in class ome.model.enums.FilamentType: Simple field ome.model.enums.FilamentType.value (java.lang.String)
getValue() - Method in class ome.model.enums.FilterType: Simple field ome.model.enums.FilterType.value (java.lang.String)
getValue() - Method in class ome.model.enums.Format: Simple field ome.model.enums.Format.value (java.lang.String)
getValue() - Method in class ome.model.enums.Illumination: Simple field ome.model.enums.Illumination.value (java.lang.String)
getValue() - Method in class ome.model.enums.Immersion: Simple field ome.model.enums.Immersion.value (java.lang.String)
getValue() - Method in class ome.model.enums.LaserMedium: Simple field ome.model.enums.LaserMedium.value (java.lang.String)
getValue() - Method in class ome.model.enums.LaserType: Simple field ome.model.enums.LaserType.value (java.lang.String)
getValue() - Method in class ome.model.enums.Medium: Simple field ome.model.enums.Medium.value (java.lang.String)
getValue() - Method in class ome.model.enums.MicrobeamManipulationType: Simple field ome.model.enums.MicrobeamManipulationType.value (java.lang.String)
getValue() - Method in class ome.model.enums.MicroscopeType: Simple field ome.model.enums.MicroscopeType.value (java.lang.String)
getValue() - Method in class ome.model.enums.PhotometricInterpretation: Simple field ome.model.enums.PhotometricInterpretation.value (java.lang.String)
getValue() - Method in class ome.model.enums.PixelsType: Simple field ome.model.enums.PixelsType.value (java.lang.String)
getValue() - Method in class ome.model.enums.ProjectionAxis: Simple field ome.model.enums.ProjectionAxis.value (java.lang.String)
getValue() - Method in class ome.model.enums.ProjectionType: Simple field ome.model.enums.ProjectionType.value (java.lang.String)
getValue() - Method in class ome.model.enums.Pulse: Simple field ome.model.enums.Pulse.value (java.lang.String)
getValue() - Method in class ome.model.enums.RenderingModel: Simple field ome.model.enums.RenderingModel.value (java.lang.String)
getValue() - Method in interface ome.model.IEnum: the single String value associated with this instance.
getValue() - Method in class ome.model.internal.NamedValue
getValue() - Method in class ome.model.jobs.JobStatus: Simple field ome.model.jobs.JobStatus.value (java.lang.String)
getValue() - Method in class ome.model.units.ElectricPotential: value of this unit-field.
getValue() - Method in class ome.model.units.Frequency: value of this unit-field.
getValue() - Method in class ome.model.units.Length: value of this unit-field.
getValue() - Method in class ome.model.units.Power: value of this unit-field.
getValue() - Method in class ome.model.units.Pressure: value of this unit-field.
getValue() - Method in class ome.model.units.Temperature: value of this unit-field.
getValue() - Method in class ome.model.units.Time: value of this unit-field.
getValue() - Method in interface ome.model.units.Unit
getVersion() - Method in class ome.model.acquisition.Detector: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.DetectorSettings: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.Dichroic: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.Filter: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.FilterSet: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.ImagingEnvironment: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.Instrument: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.LightPath: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.LightPathEmissionFilterLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.LightPathExcitationFilterLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.LightSettings: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.LightSource: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.Microscope: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.Objective: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.ObjectiveSettings: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.OTF: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.StageLabel: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.TransmittanceRange: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.Annotation: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.AnnotationAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ChannelAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.DatasetAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.DetectorAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.DichroicAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ExperimenterAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.FilesetAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.FilterAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.FolderAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ImageAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.InstrumentAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.LightPathAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.LightSourceAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.NamespaceAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.NodeAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ObjectiveAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.OriginalFileAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.PlaneInfoAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.PlateAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ProjectAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ReagentAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.RoiAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ScreenAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.SessionAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ShapeAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.WellAnnotationLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.Dataset: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.DatasetImageLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.Folder: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.FolderImageLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.FolderRoiLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.Project: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.ProjectDatasetLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.Channel: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.Image: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.LogicalChannel: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.OriginalFile: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.Pixels: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.PixelsOriginalFileMap: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.PlaneInfo: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.ChannelBinding: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.CodomainMapContext: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.ProjectionDef: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.QuantumDef: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.RenderingDef: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.Thumbnail: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.experiment.Experiment: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.experiment.MicrobeamManipulation: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.fs.Fileset: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.fs.FilesetEntry: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.fs.FilesetJobLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in interface ome.model.IMutable: optimistic-lock version.
getVersion() - Method in class ome.model.internal.Link: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.jobs.Job: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.jobs.JobOriginalFileLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.Experimenter: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.ExperimenterGroup: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.GroupExperimenterMap: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.Namespace: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.Node: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.Session: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.ShareMember: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.roi.AffineTransform: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.roi.Roi: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.roi.Shape: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.Plate: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.PlateAcquisition: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.Reagent: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.Screen: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.ScreenPlateLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.Well: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.WellReagentLink: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.WellSample: This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.stats.StatsInfo: This version number is controlled by the database for optimisitic locking.
getVersionInfo() - Method in class ome.model.jobs.MetadataImportJob
getVersionInfo() - Method in class ome.model.jobs.UploadJob
getVoltage() - Method in class ome.model.acquisition.Detector: Enum-mapped unit-based field ome.model.acquisition.Detector.voltage (ome.model.units.ElectricPotential)
getVoltage() - Method in class ome.model.acquisition.DetectorSettings: Enum-mapped unit-based field ome.model.acquisition.DetectorSettings.voltage (ome.model.units.ElectricPotential)
getWaveIncrement() - Method in class ome.model.core.Pixels: Simple field ome.model.core.Pixels.waveIncrement (java.lang.Integer)
getWavelength() - Method in class ome.model.acquisition.Laser: Enum-mapped unit-based field ome.model.acquisition.Laser.wavelength (ome.model.units.Length)
getWavelength() - Method in class ome.model.acquisition.LightSettings: Enum-mapped unit-based field ome.model.acquisition.LightSettings.wavelength (ome.model.units.Length)
getWaveRendering() - Method in class ome.model.display.RenderingDef: returns waveRendering .
getWaveStart() - Method in class ome.model.core.Pixels: Simple field ome.model.core.Pixels.waveStart (java.lang.Integer)
getWell() - Method in class ome.model.screen.WellSample: Many-to-one field ome.model.screen.WellSample.well (ome.model.screen.Well)
getWellLinks() - Method in class ome.model.screen.Reagent: returns wellLinks .
getWellLinksCountPerOwner() - Method in class ome.model.screen.Reagent: If fetched, returns the count(*) of ome.model.screen.WellReagentLink that a user has.
getWellOriginX() - Method in class ome.model.screen.Plate: Enum-mapped unit-based field ome.model.screen.Plate.wellOriginX (ome.model.units.Length)
getWellOriginY() - Method in class ome.model.screen.Plate: Enum-mapped unit-based field ome.model.screen.Plate.wellOriginY (ome.model.units.Length)
getWells() - Method in class ome.model.screen.Plate: returns wells .
getWellSample() - Method in class ome.model.screen.PlateAcquisition: returns wellSample .
getWellSample(int) - Method in class ome.model.screen.Well: Gets the ome.model.screen.WellSample at the given index.
getWellSamples() - Method in class ome.model.core.Image: returns wellSamples .
getWellSamples() - Method in class ome.model.screen.Well: returns wellSamples .
getWidth() - Method in class ome.model.roi.Mask: Simple field ome.model.roi.Mask.width (java.lang.Double)
getWidth() - Method in class ome.model.roi.Rectangle: Simple field ome.model.roi.Rectangle.width (java.lang.Double)
getWorkingDistance() - Method in class ome.model.acquisition.Objective: Enum-mapped unit-based field ome.model.acquisition.Objective.workingDistance (ome.model.units.Length)
getX() - Method in class ome.model.roi.Ellipse: Simple field ome.model.roi.Ellipse.x (java.lang.Double)
getX() - Method in class ome.model.roi.Label: Simple field ome.model.roi.Label.x (java.lang.Double)
getX() - Method in class ome.model.roi.Mask: Simple field ome.model.roi.Mask.x (java.lang.Double)
getX() - Method in class ome.model.roi.Point: Simple field ome.model.roi.Point.x (java.lang.Double)
getX() - Method in class ome.model.roi.Rectangle: Simple field ome.model.roi.Rectangle.x (java.lang.Double)
getX1() - Method in class ome.model.roi.Line: Simple field ome.model.roi.Line.x1 (java.lang.Double)
getX2() - Method in class ome.model.roi.Line: Simple field ome.model.roi.Line.x2 (java.lang.Double)
getXend() - Method in class ome.model.display.ContrastStretchingContext: Simple field ome.model.display.ContrastStretchingContext.xend (java.lang.Integer)
getXstart() - Method in class ome.model.display.ContrastStretchingContext: Simple field ome.model.display.ContrastStretchingContext.xstart (java.lang.Integer)
getY() - Method in class ome.model.roi.Ellipse: Simple field ome.model.roi.Ellipse.y (java.lang.Double)
getY() - Method in class ome.model.roi.Label: Simple field ome.model.roi.Label.y (java.lang.Double)
getY() - Method in class ome.model.roi.Mask: Simple field ome.model.roi.Mask.y (java.lang.Double)
getY() - Method in class ome.model.roi.Point: Simple field ome.model.roi.Point.y (java.lang.Double)
getY() - Method in class ome.model.roi.Rectangle: Simple field ome.model.roi.Rectangle.y (java.lang.Double)
getY1() - Method in class ome.model.roi.Line: Simple field ome.model.roi.Line.y1 (java.lang.Double)
getY2() - Method in class ome.model.roi.Line: Simple field ome.model.roi.Line.y2 (java.lang.Double)
getYend() - Method in class ome.model.display.ContrastStretchingContext: Simple field ome.model.display.ContrastStretchingContext.yend (java.lang.Integer)
getYstart() - Method in class ome.model.display.ContrastStretchingContext: Simple field ome.model.display.ContrastStretchingContext.ystart (java.lang.Integer)
getZoom() - Method in class ome.model.acquisition.Detector: Simple field ome.model.acquisition.Detector.zoom (java.lang.Double)
getZoom() - Method in class ome.model.acquisition.DetectorSettings: Simple field ome.model.acquisition.DetectorSettings.zoom (java.lang.Double)
GIGAHERTZ - ome.model.enums.UnitsFrequency
GIGAMETER - ome.model.enums.UnitsLength
GIGAPASCAL - ome.model.enums.UnitsPressure
GIGASECOND - ome.model.enums.UnitsTime
GIGAVOLT - ome.model.enums.UnitsElectricPotential
GIGAWATT - ome.model.enums.UnitsPower
globalMax - Variable in class ome.model.stats.StatsInfo
GLOBALMAX - Static variable in class ome.model.stats.StatsInfo
globalMin - Variable in class ome.model.stats.StatsInfo
GLOBALMIN - Static variable in class ome.model.stats.StatsInfo
grant(Permissions.Role, Permissions.Right...) - Method in class ome.model.internal.Permissions: turns on the rights for the given role.
grantAll(Permissions) - Method in class ome.model.internal.Permissions: takes a permissions instance and ORs it with the current instance.
GraphHolder - Class in ome.model.internal: holds information regarding the graph to which an IObject belongs.
GraphHolder() - Constructor for class ome.model.internal.GraphHolder
green - Variable in class ome.model.core.Channel
green - Variable in class ome.model.display.ChannelBinding
green - Variable in class ome.model.screen.Well
GREEN - Static variable in class ome.model.core.Channel
GREEN - Static variable in class ome.model.display.ChannelBinding
GREEN - Static variable in class ome.model.screen.Well
group - Variable in class ome.model.meta.Share
group() - Method in class ome.parameters.Filter
group() - Method in class ome.parameters.Parameters
group(long) - Method in class ome.parameters.Filter
GROUP - ome.model.internal.Permissions.Role
GROUP - Static variable in class ome.model.internal.Details
GROUP - Static variable in class ome.model.meta.Share
GROUP_FILTER - Static variable in class ome.model.acquisition.Arc
GROUP_FILTER - Static variable in class ome.model.acquisition.Detector
GROUP_FILTER - Static variable in class ome.model.acquisition.DetectorSettings
GROUP_FILTER - Static variable in class ome.model.acquisition.Dichroic
GROUP_FILTER - Static variable in class ome.model.acquisition.Filament
GROUP_FILTER - Static variable in class ome.model.acquisition.Filter
GROUP_FILTER - Static variable in class ome.model.acquisition.FilterSet
GROUP_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
GROUP_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
GROUP_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource
GROUP_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment
GROUP_FILTER - Static variable in class ome.model.acquisition.Instrument
GROUP_FILTER - Static variable in class ome.model.acquisition.Laser
GROUP_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode
GROUP_FILTER - Static variable in class ome.model.acquisition.LightPath
GROUP_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
GROUP_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
GROUP_FILTER - Static variable in class ome.model.acquisition.LightSettings
GROUP_FILTER - Static variable in class ome.model.acquisition.LightSource
GROUP_FILTER - Static variable in class ome.model.acquisition.Microscope
GROUP_FILTER - Static variable in class ome.model.acquisition.Objective
GROUP_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings
GROUP_FILTER - Static variable in class ome.model.acquisition.OTF
GROUP_FILTER - Static variable in class ome.model.acquisition.StageLabel
GROUP_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange
GROUP_FILTER - Static variable in class ome.model.annotations.Annotation
GROUP_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.BasicAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.CommentAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.FileAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.ListAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.LongAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.MapAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.NumericAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.TagAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.TermAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.TextAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.TypeAnnotation
GROUP_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink
GROUP_FILTER - Static variable in class ome.model.annotations.XmlAnnotation
GROUP_FILTER - Static variable in class ome.model.containers.Dataset
GROUP_FILTER - Static variable in class ome.model.containers.DatasetImageLink
GROUP_FILTER - Static variable in class ome.model.containers.Folder
GROUP_FILTER - Static variable in class ome.model.containers.FolderImageLink
GROUP_FILTER - Static variable in class ome.model.containers.FolderRoiLink
GROUP_FILTER - Static variable in class ome.model.containers.Project
GROUP_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink
GROUP_FILTER - Static variable in class ome.model.core.Channel
GROUP_FILTER - Static variable in class ome.model.core.Image
GROUP_FILTER - Static variable in class ome.model.core.LogicalChannel
GROUP_FILTER - Static variable in class ome.model.core.OriginalFile
GROUP_FILTER - Static variable in class ome.model.core.Pixels
GROUP_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap
GROUP_FILTER - Static variable in class ome.model.core.PlaneInfo
GROUP_FILTER - Static variable in class ome.model.display.ChannelBinding
GROUP_FILTER - Static variable in class ome.model.display.CodomainMapContext
GROUP_FILTER - Static variable in class ome.model.display.ContrastStretchingContext
GROUP_FILTER - Static variable in class ome.model.display.PlaneSlicingContext
GROUP_FILTER - Static variable in class ome.model.display.ProjectionDef
GROUP_FILTER - Static variable in class ome.model.display.QuantumDef
GROUP_FILTER - Static variable in class ome.model.display.RenderingDef
GROUP_FILTER - Static variable in class ome.model.display.ReverseIntensityContext
GROUP_FILTER - Static variable in class ome.model.display.Thumbnail
GROUP_FILTER - Static variable in class ome.model.experiment.Experiment
GROUP_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation
GROUP_FILTER - Static variable in class ome.model.fs.Fileset
GROUP_FILTER - Static variable in class ome.model.fs.FilesetEntry
GROUP_FILTER - Static variable in class ome.model.fs.FilesetJobLink
GROUP_FILTER - Static variable in class ome.model.internal.Link
GROUP_FILTER - Static variable in class ome.model.jobs.ImportJob: Deprecated.
GROUP_FILTER - Static variable in class ome.model.jobs.IndexingJob
GROUP_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob
GROUP_FILTER - Static variable in class ome.model.jobs.Job
GROUP_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink
GROUP_FILTER - Static variable in class ome.model.jobs.MetadataImportJob
GROUP_FILTER - Static variable in class ome.model.jobs.ParseJob
GROUP_FILTER - Static variable in class ome.model.jobs.PixelDataJob
GROUP_FILTER - Static variable in class ome.model.jobs.ScriptJob
GROUP_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob
GROUP_FILTER - Static variable in class ome.model.jobs.UploadJob
GROUP_FILTER - Static variable in class ome.model.meta.ExternalInfo
GROUP_FILTER - Static variable in class ome.model.roi.AffineTransform
GROUP_FILTER - Static variable in class ome.model.roi.Ellipse
GROUP_FILTER - Static variable in class ome.model.roi.Label
GROUP_FILTER - Static variable in class ome.model.roi.Line
GROUP_FILTER - Static variable in class ome.model.roi.Mask
GROUP_FILTER - Static variable in class ome.model.roi.Path: Deprecated.
GROUP_FILTER - Static variable in class ome.model.roi.Point
GROUP_FILTER - Static variable in class ome.model.roi.Polygon
GROUP_FILTER - Static variable in class ome.model.roi.Polyline
GROUP_FILTER - Static variable in class ome.model.roi.Rectangle
GROUP_FILTER - Static variable in class ome.model.roi.Roi
GROUP_FILTER - Static variable in class ome.model.roi.Shape
GROUP_FILTER - Static variable in class ome.model.screen.Plate
GROUP_FILTER - Static variable in class ome.model.screen.PlateAcquisition
GROUP_FILTER - Static variable in class ome.model.screen.Reagent
GROUP_FILTER - Static variable in class ome.model.screen.Screen
GROUP_FILTER - Static variable in class ome.model.screen.ScreenPlateLink
GROUP_FILTER - Static variable in class ome.model.screen.Well
GROUP_FILTER - Static variable in class ome.model.screen.WellReagentLink
GROUP_FILTER - Static variable in class ome.model.screen.WellSample
GROUP_FILTER - Static variable in class ome.model.stats.StatsInfo
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
GROUP_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel
GROUP_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels
GROUP_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder
GROUP_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project
GROUP_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image
GROUP_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument
GROUP_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument
GROUP_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
GROUP_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
GROUP_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
GROUP_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
GROUP_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
GROUP_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
GROUP_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
GROUP_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument
GROUP_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument
GROUP_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image
GROUP_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi
GROUP_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset
GROUP_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder
GROUP_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset
GROUP_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset
GROUP_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
GROUP_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
GROUP_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
GROUP_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
GROUP_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
GROUP_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument
GROUP_FILTER_PIXELS - Static variable in class ome.model.core.Image
GROUP_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
GROUP_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
GROUP_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels
GROUP_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
GROUP_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen
GROUP_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef
GROUP_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset
GROUP_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well
GROUP_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen
GROUP_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder
GROUP_FILTER_ROIS - Static variable in class ome.model.core.Image
GROUP_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate
GROUP_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels
GROUP_FILTER_SHAPES - Static variable in class ome.model.roi.Roi
GROUP_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
GROUP_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels
GROUP_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset
GROUP_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef
GROUP_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent
GROUP_FILTER_WELLS - Static variable in class ome.model.screen.Plate
GROUP_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
GROUP_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image
GROUP_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well
GROUP_ID - Static variable in class ome.parameters.Parameters: named parameter "groupId".
GROUP_IMMUTABLE - Static variable in class ome.model.internal.Permissions: R_R___ : user and group can only read
GROUP_PRIVATE - Static variable in class ome.model.internal.Permissions: RWRW__ : user and group can read and write
GROUP_READABLE - Static variable in class ome.model.internal.Permissions: RWR___ : user can read and write, group can read
GROUP_WRITEABLE - Static variable in class ome.model.internal.Permissions: RWRWR_ : user and group can read and write, world can read
groupExperimenterMap - Variable in class ome.model.meta.Experimenter
groupExperimenterMap - Variable in class ome.model.meta.ExperimenterGroup
GroupExperimenterMap - Class in ome.model.meta
GroupExperimenterMap() - Constructor for class ome.model.meta.GroupExperimenterMap
GroupExperimenterMap(Long) - Constructor for class ome.model.meta.GroupExperimenterMap
GroupExperimenterMap(Long, boolean) - Constructor for class ome.model.meta.GroupExperimenterMap: Main constructor.
GroupExperimenterMap(IObject, IObject, Boolean) - Constructor for class ome.model.meta.GroupExperimenterMap
GROUPEXPERIMENTERMAP - Static variable in class ome.model.meta.Experimenter
GROUPEXPERIMENTERMAP - Static variable in class ome.model.meta.ExperimenterGroup
GroupExperimenterMap.Details - Class in ome.model.meta
groupId - Variable in class ome.util.SqlAction.DeleteLog
groupInfoFor(String, long) - Method in interface ome.util.SqlAction: Return a mostly unloaded ExperimenterGroup object containing only the id, name, and permissions.
groupInfoFor(String, long) - Method in class ome.util.SqlAction.Impl
groupname - Variable in class ome.model.jobs.Job
GROUPNAME - Static variable in class ome.model.jobs.Job
GroupSecurityViolation - Exception in ome.conditions: Extension of SecurityViolation which signifies that the violation in question goes against the group-based permissions introduced in 4.2.
GroupSecurityViolation(String) - Constructor for exception ome.conditions.GroupSecurityViolation
grp(long) - Method in class ome.parameters.Parameters

H

handlePotentialPgArrayJarError(UncategorizedSQLException) - Method in class ome.util.actions.PostgresSqlAction: If postgresql is installed with an older jdbc jar that is on the bootstrap classpath, then it's possible that the use of pgarrays will fail (I think).
hash - Variable in class ome.model.core.OriginalFile
HASH - Static variable in class ome.model.core.OriginalFile
hashCode() - Method in class ome.model.enums.AcquisitionMode
hashCode() - Method in class ome.model.enums.AdminPrivilege
hashCode() - Method in class ome.model.enums.ArcType
hashCode() - Method in class ome.model.enums.Binning
hashCode() - Method in class ome.model.enums.ChecksumAlgorithm
hashCode() - Method in class ome.model.enums.ContrastMethod
hashCode() - Method in class ome.model.enums.Correction
hashCode() - Method in class ome.model.enums.DetectorType
hashCode() - Method in class ome.model.enums.DimensionOrder
hashCode() - Method in class ome.model.enums.EventType
hashCode() - Method in class ome.model.enums.ExperimentType
hashCode() - Method in class ome.model.enums.Family
hashCode() - Method in class ome.model.enums.FilamentType
hashCode() - Method in class ome.model.enums.FilterType
hashCode() - Method in class ome.model.enums.Format
hashCode() - Method in class ome.model.enums.Illumination
hashCode() - Method in class ome.model.enums.Immersion
hashCode() - Method in class ome.model.enums.LaserMedium
hashCode() - Method in class ome.model.enums.LaserType
hashCode() - Method in class ome.model.enums.Medium
hashCode() - Method in class ome.model.enums.MicrobeamManipulationType
hashCode() - Method in class ome.model.enums.MicroscopeType
hashCode() - Method in class ome.model.enums.PhotometricInterpretation
hashCode() - Method in class ome.model.enums.PixelsType
hashCode() - Method in class ome.model.enums.ProjectionAxis
hashCode() - Method in class ome.model.enums.ProjectionType
hashCode() - Method in class ome.model.enums.Pulse
hashCode() - Method in class ome.model.enums.RenderingModel
hashCode() - Method in class ome.model.internal.NamedValue
hashCode() - Method in class ome.model.jobs.JobStatus
hashCode() - Method in class ome.model.units.ElectricPotential
hashCode() - Method in class ome.model.units.Frequency
hashCode() - Method in class ome.model.units.Length
hashCode() - Method in class ome.model.units.Power
hashCode() - Method in class ome.model.units.Pressure
hashCode() - Method in class ome.model.units.Temperature
hashCode() - Method in class ome.model.units.Time
hashCode() - Method in class ome.parameters.QueryParameter
hashCode() - Method in class ome.util.LSID
hashCode(Object) - Method in class ome.model.units.GenericEnumType
hasher - Variable in class ome.model.core.OriginalFile
HASHER - Static variable in class ome.model.core.OriginalFile
hasNext() - Method in class ome.util.EmptyIterator
hasntSeen(Object) - Method in class ome.util.ContextFilter
hasToken() - Method in class ome.model.internal.GraphHolder: tests if this GraphHolder contains a Token reference.
hasUnicodeUnits() - Method in interface ome.util.SqlAction
hasUnicodeUnits() - Method in class ome.util.SqlAction.Impl
HECTOHERTZ - ome.model.enums.UnitsFrequency
HECTOMETER - ome.model.enums.UnitsLength
HECTOPASCAL - ome.model.enums.UnitsPressure
HECTOSECOND - ome.model.enums.UnitsTime
HECTOVOLT - ome.model.enums.UnitsElectricPotential
HECTOWATT - ome.model.enums.UnitsPower
height - Variable in class ome.model.roi.Mask
height - Variable in class ome.model.roi.Rectangle
HEIGHT - Static variable in class ome.model.roi.Mask
HEIGHT - Static variable in class ome.model.roi.Rectangle
HERTZ - ome.model.enums.UnitsFrequency
HOUR - ome.model.enums.UnitsTime
humidity - Variable in class ome.model.acquisition.ImagingEnvironment
HUMIDITY - Static variable in class ome.model.acquisition.ImagingEnvironment

I

IAnnotated - Interface in ome.model
IAnnotationLink - Interface in ome.model: extension of ILink for marking links whose child field is an Annotation.
id - Variable in class ome.model.acquisition.Detector
id - Variable in class ome.model.acquisition.DetectorSettings
id - Variable in class ome.model.acquisition.Dichroic
id - Variable in class ome.model.acquisition.Filter
id - Variable in class ome.model.acquisition.FilterSet
id - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
id - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
id - Variable in class ome.model.acquisition.ImagingEnvironment
id - Variable in class ome.model.acquisition.Instrument
id - Variable in class ome.model.acquisition.LightPath
id - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
id - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
id - Variable in class ome.model.acquisition.LightSettings
id - Variable in class ome.model.acquisition.LightSource
id - Variable in class ome.model.acquisition.Microscope
id - Variable in class ome.model.acquisition.Objective
id - Variable in class ome.model.acquisition.ObjectiveSettings
id - Variable in class ome.model.acquisition.OTF
id - Variable in class ome.model.acquisition.StageLabel
id - Variable in class ome.model.acquisition.TransmittanceRange
id - Variable in class ome.model.annotations.Annotation
id - Variable in class ome.model.annotations.AnnotationAnnotationLink
id - Variable in class ome.model.annotations.ChannelAnnotationLink
id - Variable in class ome.model.annotations.DatasetAnnotationLink
id - Variable in class ome.model.annotations.DetectorAnnotationLink
id - Variable in class ome.model.annotations.DichroicAnnotationLink
id - Variable in class ome.model.annotations.ExperimenterAnnotationLink
id - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
id - Variable in class ome.model.annotations.FilesetAnnotationLink
id - Variable in class ome.model.annotations.FilterAnnotationLink
id - Variable in class ome.model.annotations.FolderAnnotationLink
id - Variable in class ome.model.annotations.ImageAnnotationLink
id - Variable in class ome.model.annotations.InstrumentAnnotationLink
id - Variable in class ome.model.annotations.LightPathAnnotationLink
id - Variable in class ome.model.annotations.LightSourceAnnotationLink
id - Variable in class ome.model.annotations.NamespaceAnnotationLink
id - Variable in class ome.model.annotations.NodeAnnotationLink
id - Variable in class ome.model.annotations.ObjectiveAnnotationLink
id - Variable in class ome.model.annotations.OriginalFileAnnotationLink
id - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
id - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
id - Variable in class ome.model.annotations.PlateAnnotationLink
id - Variable in class ome.model.annotations.ProjectAnnotationLink
id - Variable in class ome.model.annotations.ReagentAnnotationLink
id - Variable in class ome.model.annotations.RoiAnnotationLink
id - Variable in class ome.model.annotations.ScreenAnnotationLink
id - Variable in class ome.model.annotations.SessionAnnotationLink
id - Variable in class ome.model.annotations.ShapeAnnotationLink
id - Variable in class ome.model.annotations.WellAnnotationLink
id - Variable in class ome.model.containers.Dataset
id - Variable in class ome.model.containers.DatasetImageLink
id - Variable in class ome.model.containers.Folder
id - Variable in class ome.model.containers.FolderImageLink
id - Variable in class ome.model.containers.FolderRoiLink
id - Variable in class ome.model.containers.Project
id - Variable in class ome.model.containers.ProjectDatasetLink
id - Variable in class ome.model.core.Channel
id - Variable in class ome.model.core.Image
id - Variable in class ome.model.core.LogicalChannel
id - Variable in class ome.model.core.OriginalFile
id - Variable in class ome.model.core.Pixels
id - Variable in class ome.model.core.PixelsOriginalFileMap
id - Variable in class ome.model.core.PlaneInfo
id - Variable in class ome.model.display.ChannelBinding
id - Variable in class ome.model.display.CodomainMapContext
id - Variable in class ome.model.display.ProjectionDef
id - Variable in class ome.model.display.QuantumDef
id - Variable in class ome.model.display.RenderingDef
id - Variable in class ome.model.display.Thumbnail
id - Variable in class ome.model.enums.AcquisitionMode
id - Variable in class ome.model.enums.AdminPrivilege
id - Variable in class ome.model.enums.ArcType
id - Variable in class ome.model.enums.Binning
id - Variable in class ome.model.enums.ChecksumAlgorithm
id - Variable in class ome.model.enums.ContrastMethod
id - Variable in class ome.model.enums.Correction
id - Variable in class ome.model.enums.DetectorType
id - Variable in class ome.model.enums.DimensionOrder
id - Variable in class ome.model.enums.EventType
id - Variable in class ome.model.enums.ExperimentType
id - Variable in class ome.model.enums.Family
id - Variable in class ome.model.enums.FilamentType
id - Variable in class ome.model.enums.FilterType
id - Variable in class ome.model.enums.Format
id - Variable in class ome.model.enums.Illumination
id - Variable in class ome.model.enums.Immersion
id - Variable in class ome.model.enums.LaserMedium
id - Variable in class ome.model.enums.LaserType
id - Variable in class ome.model.enums.Medium
id - Variable in class ome.model.enums.MicrobeamManipulationType
id - Variable in class ome.model.enums.MicroscopeType
id - Variable in class ome.model.enums.PhotometricInterpretation
id - Variable in class ome.model.enums.PixelsType
id - Variable in class ome.model.enums.ProjectionAxis
id - Variable in class ome.model.enums.ProjectionType
id - Variable in class ome.model.enums.Pulse
id - Variable in class ome.model.enums.RenderingModel
id - Variable in class ome.model.experiment.Experiment
id - Variable in class ome.model.experiment.MicrobeamManipulation
id - Variable in class ome.model.fs.Fileset
id - Variable in class ome.model.fs.FilesetEntry
id - Variable in class ome.model.fs.FilesetJobLink
id - Variable in class ome.model.internal.Link
id - Variable in class ome.model.jobs.Job
id - Variable in class ome.model.jobs.JobOriginalFileLink
id - Variable in class ome.model.jobs.JobStatus
id - Variable in class ome.model.meta.DBPatch
id - Variable in class ome.model.meta.Event
id - Variable in class ome.model.meta.EventLog
id - Variable in class ome.model.meta.Experimenter
id - Variable in class ome.model.meta.ExperimenterGroup
id - Variable in class ome.model.meta.ExternalInfo
id - Variable in class ome.model.meta.GroupExperimenterMap
id - Variable in class ome.model.meta.Namespace
id - Variable in class ome.model.meta.Node
id - Variable in class ome.model.meta.Session
id - Variable in class ome.model.meta.ShareMember
id - Variable in class ome.model.roi.AffineTransform
id - Variable in class ome.model.roi.Roi
id - Variable in class ome.model.roi.Shape
id - Variable in class ome.model.screen.Plate
id - Variable in class ome.model.screen.PlateAcquisition
id - Variable in class ome.model.screen.Reagent
id - Variable in class ome.model.screen.Screen
id - Variable in class ome.model.screen.ScreenPlateLink
id - Variable in class ome.model.screen.Well
id - Variable in class ome.model.screen.WellReagentLink
id - Variable in class ome.model.screen.WellSample
id - Variable in class ome.model.stats.StatsInfo
ID - Static variable in class ome.model.acquisition.Detector
ID - Static variable in class ome.model.acquisition.DetectorSettings
ID - Static variable in class ome.model.acquisition.Dichroic
ID - Static variable in class ome.model.acquisition.Filter
ID - Static variable in class ome.model.acquisition.FilterSet
ID - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
ID - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
ID - Static variable in class ome.model.acquisition.ImagingEnvironment
ID - Static variable in class ome.model.acquisition.Instrument
ID - Static variable in class ome.model.acquisition.LightPath
ID - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
ID - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
ID - Static variable in class ome.model.acquisition.LightSettings
ID - Static variable in class ome.model.acquisition.LightSource
ID - Static variable in class ome.model.acquisition.Microscope
ID - Static variable in class ome.model.acquisition.Objective
ID - Static variable in class ome.model.acquisition.ObjectiveSettings
ID - Static variable in class ome.model.acquisition.OTF
ID - Static variable in class ome.model.acquisition.StageLabel
ID - Static variable in class ome.model.acquisition.TransmittanceRange
ID - Static variable in class ome.model.annotations.Annotation
ID - Static variable in class ome.model.annotations.AnnotationAnnotationLink
ID - Static variable in class ome.model.annotations.ChannelAnnotationLink
ID - Static variable in class ome.model.annotations.DatasetAnnotationLink
ID - Static variable in class ome.model.annotations.DetectorAnnotationLink
ID - Static variable in class ome.model.annotations.DichroicAnnotationLink
ID - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
ID - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
ID - Static variable in class ome.model.annotations.FilesetAnnotationLink
ID - Static variable in class ome.model.annotations.FilterAnnotationLink
ID - Static variable in class ome.model.annotations.FolderAnnotationLink
ID - Static variable in class ome.model.annotations.ImageAnnotationLink
ID - Static variable in class ome.model.annotations.InstrumentAnnotationLink
ID - Static variable in class ome.model.annotations.LightPathAnnotationLink
ID - Static variable in class ome.model.annotations.LightSourceAnnotationLink
ID - Static variable in class ome.model.annotations.NamespaceAnnotationLink
ID - Static variable in class ome.model.annotations.NodeAnnotationLink
ID - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
ID - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
ID - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
ID - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
ID - Static variable in class ome.model.annotations.PlateAnnotationLink
ID - Static variable in class ome.model.annotations.ProjectAnnotationLink
ID - Static variable in class ome.model.annotations.ReagentAnnotationLink
ID - Static variable in class ome.model.annotations.RoiAnnotationLink
ID - Static variable in class ome.model.annotations.ScreenAnnotationLink
ID - Static variable in class ome.model.annotations.SessionAnnotationLink
ID - Static variable in class ome.model.annotations.ShapeAnnotationLink
ID - Static variable in class ome.model.annotations.WellAnnotationLink
ID - Static variable in class ome.model.containers.Dataset
ID - Static variable in class ome.model.containers.DatasetImageLink
ID - Static variable in class ome.model.containers.Folder
ID - Static variable in class ome.model.containers.FolderImageLink
ID - Static variable in class ome.model.containers.FolderRoiLink
ID - Static variable in class ome.model.containers.Project
ID - Static variable in class ome.model.containers.ProjectDatasetLink
ID - Static variable in class ome.model.core.Channel
ID - Static variable in class ome.model.core.Image
ID - Static variable in class ome.model.core.LogicalChannel
ID - Static variable in class ome.model.core.OriginalFile
ID - Static variable in class ome.model.core.Pixels
ID - Static variable in class ome.model.core.PixelsOriginalFileMap
ID - Static variable in class ome.model.core.PlaneInfo
ID - Static variable in class ome.model.display.ChannelBinding
ID - Static variable in class ome.model.display.CodomainMapContext
ID - Static variable in class ome.model.display.ProjectionDef
ID - Static variable in class ome.model.display.QuantumDef
ID - Static variable in class ome.model.display.RenderingDef
ID - Static variable in class ome.model.display.Thumbnail
ID - Static variable in class ome.model.enums.AcquisitionMode
ID - Static variable in class ome.model.enums.AdminPrivilege
ID - Static variable in class ome.model.enums.ArcType
ID - Static variable in class ome.model.enums.Binning
ID - Static variable in class ome.model.enums.ChecksumAlgorithm
ID - Static variable in class ome.model.enums.ContrastMethod
ID - Static variable in class ome.model.enums.Correction
ID - Static variable in class ome.model.enums.DetectorType
ID - Static variable in class ome.model.enums.DimensionOrder
ID - Static variable in class ome.model.enums.EventType
ID - Static variable in class ome.model.enums.ExperimentType
ID - Static variable in class ome.model.enums.Family
ID - Static variable in class ome.model.enums.FilamentType
ID - Static variable in class ome.model.enums.FilterType
ID - Static variable in class ome.model.enums.Format
ID - Static variable in class ome.model.enums.Illumination
ID - Static variable in class ome.model.enums.Immersion
ID - Static variable in class ome.model.enums.LaserMedium
ID - Static variable in class ome.model.enums.LaserType
ID - Static variable in class ome.model.enums.Medium
ID - Static variable in class ome.model.enums.MicrobeamManipulationType
ID - Static variable in class ome.model.enums.MicroscopeType
ID - Static variable in class ome.model.enums.PhotometricInterpretation
ID - Static variable in class ome.model.enums.PixelsType
ID - Static variable in class ome.model.enums.ProjectionAxis
ID - Static variable in class ome.model.enums.ProjectionType
ID - Static variable in class ome.model.enums.Pulse
ID - Static variable in class ome.model.enums.RenderingModel
ID - Static variable in class ome.model.experiment.Experiment
ID - Static variable in class ome.model.experiment.MicrobeamManipulation
ID - Static variable in class ome.model.fs.Fileset
ID - Static variable in class ome.model.fs.FilesetEntry
ID - Static variable in class ome.model.fs.FilesetJobLink
ID - Static variable in class ome.model.internal.Link
ID - Static variable in class ome.model.jobs.Job
ID - Static variable in class ome.model.jobs.JobOriginalFileLink
ID - Static variable in class ome.model.jobs.JobStatus
ID - Static variable in class ome.model.meta.DBPatch
ID - Static variable in class ome.model.meta.Event
ID - Static variable in class ome.model.meta.EventLog
ID - Static variable in class ome.model.meta.Experimenter
ID - Static variable in class ome.model.meta.ExperimenterGroup
ID - Static variable in class ome.model.meta.ExternalInfo
ID - Static variable in class ome.model.meta.GroupExperimenterMap
ID - Static variable in class ome.model.meta.Namespace
ID - Static variable in class ome.model.meta.Node
ID - Static variable in class ome.model.meta.Session
ID - Static variable in class ome.model.meta.ShareMember
ID - Static variable in class ome.model.roi.AffineTransform
ID - Static variable in class ome.model.roi.Roi
ID - Static variable in class ome.model.roi.Shape
ID - Static variable in class ome.model.screen.Plate
ID - Static variable in class ome.model.screen.PlateAcquisition
ID - Static variable in class ome.model.screen.Reagent
ID - Static variable in class ome.model.screen.Screen
ID - Static variable in class ome.model.screen.ScreenPlateLink
ID - Static variable in class ome.model.screen.Well
ID - Static variable in class ome.model.screen.WellReagentLink
ID - Static variable in class ome.model.screen.WellSample
ID - Static variable in class ome.model.stats.StatsInfo
ID - Static variable in class ome.parameters.Parameters: named parameter "id".
IdBlock - Class in ome.util: CBlock implementation which collects ids from IObjects
IdBlock() - Constructor for class ome.util.IdBlock
identical(Permissions) - Method in class ome.model.internal.Permissions: two Permissions instances are identical if they have the same bit representation.
IDetails - Interface in ome.model: simple interface for Details; currently unused.
IdRowMapper() - Constructor for class ome.util.SqlAction.IdRowMapper
IDS - Static variable in class ome.parameters.Parameters: named parameter "ids".
IEnum - Interface in ome.model: interface for all domain enumarations.
IGlobal - Interface in ome.model: marker interface for all global types, which have no IDetails fields other than permissions.
ILink - Interface in ome.model: extension of IObject for building object hierarchies.
illumination - Variable in class ome.model.core.LogicalChannel
Illumination - Class in ome.model.enums
Illumination() - Constructor for class ome.model.enums.Illumination
Illumination(Long) - Constructor for class ome.model.enums.Illumination
Illumination(Long, boolean) - Constructor for class ome.model.enums.Illumination: Main constructor.
Illumination(String) - Constructor for class ome.model.enums.Illumination
ILLUMINATION - Static variable in class ome.model.core.LogicalChannel
Illumination.Details - Class in ome.model.enums
image - Variable in class ome.model.core.Pixels
image - Variable in class ome.model.roi.Roi
image - Variable in class ome.model.screen.WellSample
Image - Class in ome.model.core: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Image() - Constructor for class ome.model.core.Image
Image(Long) - Constructor for class ome.model.core.Image
Image(Long, boolean) - Constructor for class ome.model.core.Image: Main constructor.
Image(String) - Constructor for class ome.model.core.Image
IMAGE - Static variable in class ome.model.core.Pixels
IMAGE - Static variable in class ome.model.roi.Roi
IMAGE - Static variable in class ome.model.screen.WellSample
Image.Details - Class in ome.model.core
ImageAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ImageAnnotationLink() - Constructor for class ome.model.annotations.ImageAnnotationLink
ImageAnnotationLink(Long) - Constructor for class ome.model.annotations.ImageAnnotationLink
ImageAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ImageAnnotationLink: Main constructor.
ImageAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ImageAnnotationLink
ImageAnnotationLink.Details - Class in ome.model.annotations
imageDescription - Variable in class ome.model.jobs.ImportJob: Deprecated.
IMAGEDESCRIPTION - Static variable in class ome.model.jobs.ImportJob: Deprecated.
imageLinks - Variable in class ome.model.containers.Dataset
imageLinks - Variable in class ome.model.containers.Folder
IMAGELINKS - Static variable in class ome.model.containers.Dataset
IMAGELINKS - Static variable in class ome.model.containers.Folder
IMAGELINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset
IMAGELINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder
imageName - Variable in class ome.model.jobs.ImportJob: Deprecated.
IMAGENAME - Static variable in class ome.model.jobs.ImportJob: Deprecated.
images - Variable in class ome.model.fs.Fileset
IMAGES - Static variable in class ome.model.fs.Fileset
ImageUtil - Class in ome.util: Provides helper methods for performing various things on image data.
ImageUtil() - Constructor for class ome.util.ImageUtil
imagingEnvironment - Variable in class ome.model.core.Image
ImagingEnvironment - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ImagingEnvironment() - Constructor for class ome.model.acquisition.ImagingEnvironment
ImagingEnvironment(Long) - Constructor for class ome.model.acquisition.ImagingEnvironment
ImagingEnvironment(Long, boolean) - Constructor for class ome.model.acquisition.ImagingEnvironment: Main constructor.
IMAGINGENVIRONMENT - Static variable in class ome.model.core.Image
ImagingEnvironment.Details - Class in ome.model.acquisition
immersion - Variable in class ome.model.acquisition.Objective
Immersion - Class in ome.model.enums
Immersion() - Constructor for class ome.model.enums.Immersion
Immersion(Long) - Constructor for class ome.model.enums.Immersion
Immersion(Long, boolean) - Constructor for class ome.model.enums.Immersion: Main constructor.
Immersion(String) - Constructor for class ome.model.enums.Immersion
IMMERSION - Static variable in class ome.model.acquisition.Objective
Immersion.Details - Class in ome.model.enums
Impl() - Constructor for class ome.util.SqlAction.Impl
ImportJob - Class in ome.model.jobs: Deprecated.
ImportJob() - Constructor for class ome.model.jobs.ImportJob: Deprecated.
ImportJob(Long) - Constructor for class ome.model.jobs.ImportJob: Deprecated.
ImportJob(Long, boolean) - Constructor for class ome.model.jobs.ImportJob: Deprecated.

Main constructor.
ImportJob(String, String) - Constructor for class ome.model.jobs.ImportJob: Deprecated.
IMutable - Interface in ome.model: interface for all mutable domain objects.
in(String[]) - Method in class ome.util.PixelData: Returns whether or not the pixel data type is is one of the elements in an array.
INCH - ome.model.enums.UnitsLength
increment() - Method in class ome.util.Counter: Increment the value of this counter by one.
IndexingJob - Class in ome.model.jobs
IndexingJob() - Constructor for class ome.model.jobs.IndexingJob
IndexingJob(Long) - Constructor for class ome.model.jobs.IndexingJob
IndexingJob(Long, boolean) - Constructor for class ome.model.jobs.IndexingJob: Main constructor.
inputEnd - Variable in class ome.model.display.ChannelBinding
INPUTEND - Static variable in class ome.model.display.ChannelBinding
inputStart - Variable in class ome.model.display.ChannelBinding
INPUTSTART - Static variable in class ome.model.display.ChannelBinding
insertCurrentAdminPrivileges(Iterable<AdminPrivilege>) - Method in class ome.util.SqlAction.Impl
insertCurrentAdminPrivileges(Iterable<AdminPrivilege>) - Method in interface ome.util.SqlAction: Insert the current light administrator privileges for the current transaction.
insertFormat(String) - Method in class ome.util.actions.PostgresSqlAction: Deprecated.
insertFormat(String) - Method in interface ome.util.SqlAction: Deprecated.
insertFormatSql - Static variable in class ome.util.actions.PostgresSqlAction: Deprecated.
insertLogs(List<Object[]>) - Method in class ome.util.actions.PostgresSqlAction
insertLogs(List<Object[]>) - Method in interface ome.util.SqlAction
insertRows(PersistentCollection, Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister
insertSession(Map<String, Object>) - Method in class ome.util.actions.PostgresSqlAction
insertSession(Map<String, Object>) - Method in interface ome.util.SqlAction
institution - Variable in class ome.model.meta.Experimenter
INSTITUTION - Static variable in class ome.model.meta.Experimenter
instrument - Variable in class ome.model.acquisition.Detector
instrument - Variable in class ome.model.acquisition.Dichroic
instrument - Variable in class ome.model.acquisition.Filter
instrument - Variable in class ome.model.acquisition.FilterSet
instrument - Variable in class ome.model.acquisition.LightSource
instrument - Variable in class ome.model.acquisition.Objective
instrument - Variable in class ome.model.acquisition.OTF
instrument - Variable in class ome.model.core.Image
Instrument - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Instrument() - Constructor for class ome.model.acquisition.Instrument
Instrument(Long) - Constructor for class ome.model.acquisition.Instrument
Instrument(Long, boolean) - Constructor for class ome.model.acquisition.Instrument: Main constructor.
INSTRUMENT - Static variable in class ome.model.acquisition.Detector
INSTRUMENT - Static variable in class ome.model.acquisition.Dichroic
INSTRUMENT - Static variable in class ome.model.acquisition.Filter
INSTRUMENT - Static variable in class ome.model.acquisition.FilterSet
INSTRUMENT - Static variable in class ome.model.acquisition.LightSource
INSTRUMENT - Static variable in class ome.model.acquisition.Objective
INSTRUMENT - Static variable in class ome.model.acquisition.OTF
INSTRUMENT - Static variable in class ome.model.core.Image
Instrument.Details - Class in ome.model.acquisition
InstrumentAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
InstrumentAnnotationLink() - Constructor for class ome.model.annotations.InstrumentAnnotationLink
InstrumentAnnotationLink(Long) - Constructor for class ome.model.annotations.InstrumentAnnotationLink
InstrumentAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.InstrumentAnnotationLink: Main constructor.
InstrumentAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.InstrumentAnnotationLink
InstrumentAnnotationLink.Details - Class in ome.model.annotations
Int(long) - Constructor for class ome.model.units.Conversion.Int
Int(String) - Constructor for class ome.model.units.Conversion.Int
Int(long) - Static method in class ome.model.units.Conversion: Static helper for creating Conversion.Int instances.
Int(String) - Static method in class ome.model.units.Conversion: Static helper for creating Conversion.Int instances.
INT - Static variable in class ome.util.PixelData: Identifies the type used to store pixel values.
integration - Variable in class ome.model.acquisition.DetectorSettings
INTEGRATION - Static variable in class ome.model.acquisition.DetectorSettings
IntegrityCheckJob - Class in ome.model.jobs
IntegrityCheckJob() - Constructor for class ome.model.jobs.IntegrityCheckJob
IntegrityCheckJob(Long) - Constructor for class ome.model.jobs.IntegrityCheckJob
IntegrityCheckJob(Long, boolean) - Constructor for class ome.model.jobs.IntegrityCheckJob: Main constructor.
InternalException - Exception in ome.conditions: Catchall for unknown server exceptions.
InternalException(String) - Constructor for exception ome.conditions.InternalException
internalForm(Permissions) - Static method in class ome.util.Utils: Returns the internal representation of a Permissions object.
invalidate(String) - Method in class ome.util.Validation
invoke(MethodInvocation) - Method in class ome.util.SqlAction.LoggingSqlAction
IObject - Interface in ome.model: central model interface.
iris - Variable in class ome.model.acquisition.Objective
IRIS - Static variable in class ome.model.acquisition.Objective
isAcquisitionData() - Method in class ome.parameters.Parameters
isCache() - Method in class ome.parameters.Parameters
isDisallow(boolean[], int) - Static method in class ome.model.internal.Permissions
isDisallowAnnotate() - Method in class ome.model.internal.Permissions
isDisallowChgrp() - Method in class ome.model.internal.Permissions
isDisallowChown() - Method in class ome.model.internal.Permissions
isDisallowDelete() - Method in class ome.model.internal.Permissions
isDisallowEdit() - Method in class ome.model.internal.Permissions
isDisallowLink() - Method in class ome.model.internal.Permissions
isExperimenter() - Method in class ome.parameters.Parameters
isFileInRepo(String, long, Set<String>) - Method in class ome.util.SqlAction.Impl
isFileInRepo(String, long, Set<String>) - Method in interface ome.util.SqlAction
isFiltered(String) - Method in class ome.model.internal.Details: Was this collection filtered during creation? If so, it should not be saved to the DB.
isFloat - Variable in class ome.util.PixelData: If the data is floating point.
isFloat() - Method in class ome.util.PixelData: Returns whether or not the data is floating point.
isGranted(Permissions.Role, Permissions.Right) - Method in class ome.model.internal.Permissions: tests that a given Permissions.Role has the given Permissions.Right.
isGroup() - Method in class ome.parameters.Parameters
isLdapExperimenter(Long) - Method in class ome.util.SqlAction.Impl
isLdapExperimenter(Long) - Method in interface ome.util.SqlAction: Checks whether the specified experimenter ID has the ldap flag set.
isLeaves() - Method in class ome.parameters.Parameters
isLoaded() - Method in class ome.model.acquisition.Detector
isLoaded() - Method in class ome.model.acquisition.DetectorSettings
isLoaded() - Method in class ome.model.acquisition.Dichroic
isLoaded() - Method in class ome.model.acquisition.Filter
isLoaded() - Method in class ome.model.acquisition.FilterSet
isLoaded() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
isLoaded() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
isLoaded() - Method in class ome.model.acquisition.ImagingEnvironment
isLoaded() - Method in class ome.model.acquisition.Instrument
isLoaded() - Method in class ome.model.acquisition.LightPath
isLoaded() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
isLoaded() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
isLoaded() - Method in class ome.model.acquisition.LightSettings
isLoaded() - Method in class ome.model.acquisition.LightSource
isLoaded() - Method in class ome.model.acquisition.Microscope
isLoaded() - Method in class ome.model.acquisition.Objective
isLoaded() - Method in class ome.model.acquisition.ObjectiveSettings
isLoaded() - Method in class ome.model.acquisition.OTF
isLoaded() - Method in class ome.model.acquisition.StageLabel
isLoaded() - Method in class ome.model.acquisition.TransmittanceRange
isLoaded() - Method in class ome.model.annotations.Annotation
isLoaded() - Method in class ome.model.annotations.AnnotationAnnotationLink
isLoaded() - Method in class ome.model.annotations.ChannelAnnotationLink
isLoaded() - Method in class ome.model.annotations.DatasetAnnotationLink
isLoaded() - Method in class ome.model.annotations.DetectorAnnotationLink
isLoaded() - Method in class ome.model.annotations.DichroicAnnotationLink
isLoaded() - Method in class ome.model.annotations.ExperimenterAnnotationLink
isLoaded() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
isLoaded() - Method in class ome.model.annotations.FilesetAnnotationLink
isLoaded() - Method in class ome.model.annotations.FilterAnnotationLink
isLoaded() - Method in class ome.model.annotations.FolderAnnotationLink
isLoaded() - Method in class ome.model.annotations.ImageAnnotationLink
isLoaded() - Method in class ome.model.annotations.InstrumentAnnotationLink
isLoaded() - Method in class ome.model.annotations.LightPathAnnotationLink
isLoaded() - Method in class ome.model.annotations.LightSourceAnnotationLink
isLoaded() - Method in class ome.model.annotations.NamespaceAnnotationLink
isLoaded() - Method in class ome.model.annotations.NodeAnnotationLink
isLoaded() - Method in class ome.model.annotations.ObjectiveAnnotationLink
isLoaded() - Method in class ome.model.annotations.OriginalFileAnnotationLink
isLoaded() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
isLoaded() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
isLoaded() - Method in class ome.model.annotations.PlateAnnotationLink
isLoaded() - Method in class ome.model.annotations.ProjectAnnotationLink
isLoaded() - Method in class ome.model.annotations.ReagentAnnotationLink
isLoaded() - Method in class ome.model.annotations.RoiAnnotationLink
isLoaded() - Method in class ome.model.annotations.ScreenAnnotationLink
isLoaded() - Method in class ome.model.annotations.SessionAnnotationLink
isLoaded() - Method in class ome.model.annotations.ShapeAnnotationLink
isLoaded() - Method in class ome.model.annotations.WellAnnotationLink
isLoaded() - Method in class ome.model.containers.Dataset
isLoaded() - Method in class ome.model.containers.DatasetImageLink
isLoaded() - Method in class ome.model.containers.Folder
isLoaded() - Method in class ome.model.containers.FolderImageLink
isLoaded() - Method in class ome.model.containers.FolderRoiLink
isLoaded() - Method in class ome.model.containers.Project
isLoaded() - Method in class ome.model.containers.ProjectDatasetLink
isLoaded() - Method in class ome.model.core.Channel
isLoaded() - Method in class ome.model.core.Image
isLoaded() - Method in class ome.model.core.LogicalChannel
isLoaded() - Method in class ome.model.core.OriginalFile
isLoaded() - Method in class ome.model.core.Pixels
isLoaded() - Method in class ome.model.core.PixelsOriginalFileMap
isLoaded() - Method in class ome.model.core.PlaneInfo
isLoaded() - Method in class ome.model.display.ChannelBinding
isLoaded() - Method in class ome.model.display.CodomainMapContext
isLoaded() - Method in class ome.model.display.ProjectionDef
isLoaded() - Method in class ome.model.display.QuantumDef
isLoaded() - Method in class ome.model.display.RenderingDef
isLoaded() - Method in class ome.model.display.Thumbnail
isLoaded() - Method in class ome.model.enums.AcquisitionMode
isLoaded() - Method in class ome.model.enums.AdminPrivilege
isLoaded() - Method in class ome.model.enums.ArcType
isLoaded() - Method in class ome.model.enums.Binning
isLoaded() - Method in class ome.model.enums.ChecksumAlgorithm
isLoaded() - Method in class ome.model.enums.ContrastMethod
isLoaded() - Method in class ome.model.enums.Correction
isLoaded() - Method in class ome.model.enums.DetectorType
isLoaded() - Method in class ome.model.enums.DimensionOrder
isLoaded() - Method in class ome.model.enums.EventType
isLoaded() - Method in class ome.model.enums.ExperimentType
isLoaded() - Method in class ome.model.enums.Family
isLoaded() - Method in class ome.model.enums.FilamentType
isLoaded() - Method in class ome.model.enums.FilterType
isLoaded() - Method in class ome.model.enums.Format
isLoaded() - Method in class ome.model.enums.Illumination
isLoaded() - Method in class ome.model.enums.Immersion
isLoaded() - Method in class ome.model.enums.LaserMedium
isLoaded() - Method in class ome.model.enums.LaserType
isLoaded() - Method in class ome.model.enums.Medium
isLoaded() - Method in class ome.model.enums.MicrobeamManipulationType
isLoaded() - Method in class ome.model.enums.MicroscopeType
isLoaded() - Method in class ome.model.enums.PhotometricInterpretation
isLoaded() - Method in class ome.model.enums.PixelsType
isLoaded() - Method in class ome.model.enums.ProjectionAxis
isLoaded() - Method in class ome.model.enums.ProjectionType
isLoaded() - Method in class ome.model.enums.Pulse
isLoaded() - Method in class ome.model.enums.RenderingModel
isLoaded() - Method in class ome.model.experiment.Experiment
isLoaded() - Method in class ome.model.experiment.MicrobeamManipulation
isLoaded() - Method in class ome.model.fs.Fileset
isLoaded() - Method in class ome.model.fs.FilesetEntry
isLoaded() - Method in class ome.model.fs.FilesetJobLink
isLoaded() - Method in class ome.model.internal.Link
isLoaded() - Method in interface ome.model.IObject: transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
isLoaded() - Method in class ome.model.jobs.Job
isLoaded() - Method in class ome.model.jobs.JobOriginalFileLink
isLoaded() - Method in class ome.model.jobs.JobStatus
isLoaded() - Method in class ome.model.meta.DBPatch
isLoaded() - Method in class ome.model.meta.Event
isLoaded() - Method in class ome.model.meta.EventLog
isLoaded() - Method in class ome.model.meta.Experimenter
isLoaded() - Method in class ome.model.meta.ExperimenterGroup
isLoaded() - Method in class ome.model.meta.ExternalInfo
isLoaded() - Method in class ome.model.meta.GroupExperimenterMap
isLoaded() - Method in class ome.model.meta.Namespace
isLoaded() - Method in class ome.model.meta.Node
isLoaded() - Method in class ome.model.meta.Session
isLoaded() - Method in class ome.model.meta.ShareMember
isLoaded() - Method in class ome.model.roi.AffineTransform
isLoaded() - Method in class ome.model.roi.Roi
isLoaded() - Method in class ome.model.roi.Shape
isLoaded() - Method in class ome.model.screen.Plate
isLoaded() - Method in class ome.model.screen.PlateAcquisition
isLoaded() - Method in class ome.model.screen.Reagent
isLoaded() - Method in class ome.model.screen.Screen
isLoaded() - Method in class ome.model.screen.ScreenPlateLink
isLoaded() - Method in class ome.model.screen.Well
isLoaded() - Method in class ome.model.screen.WellReagentLink
isLoaded() - Method in class ome.model.screen.WellSample
isLoaded() - Method in class ome.model.stats.StatsInfo
isLoaded() - Method in class ome.util.PermDetails
isMutable() - Method in class ome.model.units.GenericEnumType
isOrphan() - Method in class ome.parameters.Parameters
isPagination() - Method in class ome.parameters.Parameters
isSet(Permissions.Flag) - Method in class ome.model.internal.Permissions: tests that a given Permissions.Flag is set.
isSigned - Variable in class ome.util.PixelData: If the data is signed.
isSigned() - Method in class ome.util.PixelData: Returns whether or not the data is signed.
isUnique() - Method in class ome.parameters.Filter: check uniqueness for this query.
isUnique() - Method in class ome.parameters.Parameters
isValid() - Method in class ome.model.acquisition.Arc
isValid() - Method in class ome.model.acquisition.Detector
isValid() - Method in class ome.model.acquisition.DetectorSettings
isValid() - Method in class ome.model.acquisition.Dichroic
isValid() - Method in class ome.model.acquisition.Filament
isValid() - Method in class ome.model.acquisition.Filter
isValid() - Method in class ome.model.acquisition.FilterSet
isValid() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
isValid() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
isValid() - Method in class ome.model.acquisition.GenericExcitationSource
isValid() - Method in class ome.model.acquisition.ImagingEnvironment
isValid() - Method in class ome.model.acquisition.Instrument
isValid() - Method in class ome.model.acquisition.Laser
isValid() - Method in class ome.model.acquisition.LightEmittingDiode
isValid() - Method in class ome.model.acquisition.LightPath
isValid() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
isValid() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
isValid() - Method in class ome.model.acquisition.LightSettings
isValid() - Method in class ome.model.acquisition.LightSource
isValid() - Method in class ome.model.acquisition.Microscope
isValid() - Method in class ome.model.acquisition.Objective
isValid() - Method in class ome.model.acquisition.ObjectiveSettings
isValid() - Method in class ome.model.acquisition.OTF
isValid() - Method in class ome.model.acquisition.StageLabel
isValid() - Method in class ome.model.acquisition.TransmittanceRange
isValid() - Method in class ome.model.annotations.Annotation
isValid() - Method in class ome.model.annotations.AnnotationAnnotationLink
isValid() - Method in class ome.model.annotations.BasicAnnotation
isValid() - Method in class ome.model.annotations.BooleanAnnotation
isValid() - Method in class ome.model.annotations.ChannelAnnotationLink
isValid() - Method in class ome.model.annotations.CommentAnnotation
isValid() - Method in class ome.model.annotations.DatasetAnnotationLink
isValid() - Method in class ome.model.annotations.DetectorAnnotationLink
isValid() - Method in class ome.model.annotations.DichroicAnnotationLink
isValid() - Method in class ome.model.annotations.DoubleAnnotation
isValid() - Method in class ome.model.annotations.ExperimenterAnnotationLink
isValid() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
isValid() - Method in class ome.model.annotations.FileAnnotation
isValid() - Method in class ome.model.annotations.FilesetAnnotationLink
isValid() - Method in class ome.model.annotations.FilterAnnotationLink
isValid() - Method in class ome.model.annotations.FolderAnnotationLink
isValid() - Method in class ome.model.annotations.ImageAnnotationLink
isValid() - Method in class ome.model.annotations.InstrumentAnnotationLink
isValid() - Method in class ome.model.annotations.LightPathAnnotationLink
isValid() - Method in class ome.model.annotations.LightSourceAnnotationLink
isValid() - Method in class ome.model.annotations.ListAnnotation
isValid() - Method in class ome.model.annotations.LongAnnotation
isValid() - Method in class ome.model.annotations.MapAnnotation
isValid() - Method in class ome.model.annotations.NamespaceAnnotationLink
isValid() - Method in class ome.model.annotations.NodeAnnotationLink
isValid() - Method in class ome.model.annotations.NumericAnnotation
isValid() - Method in class ome.model.annotations.ObjectiveAnnotationLink
isValid() - Method in class ome.model.annotations.OriginalFileAnnotationLink
isValid() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
isValid() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
isValid() - Method in class ome.model.annotations.PlateAnnotationLink
isValid() - Method in class ome.model.annotations.ProjectAnnotationLink
isValid() - Method in class ome.model.annotations.ReagentAnnotationLink
isValid() - Method in class ome.model.annotations.RoiAnnotationLink
isValid() - Method in class ome.model.annotations.ScreenAnnotationLink
isValid() - Method in class ome.model.annotations.SessionAnnotationLink
isValid() - Method in class ome.model.annotations.ShapeAnnotationLink
isValid() - Method in class ome.model.annotations.TagAnnotation
isValid() - Method in class ome.model.annotations.TermAnnotation
isValid() - Method in class ome.model.annotations.TextAnnotation
isValid() - Method in class ome.model.annotations.TimestampAnnotation
isValid() - Method in class ome.model.annotations.TypeAnnotation
isValid() - Method in class ome.model.annotations.WellAnnotationLink
isValid() - Method in class ome.model.annotations.XmlAnnotation
isValid() - Method in class ome.model.containers.Dataset
isValid() - Method in class ome.model.containers.DatasetImageLink
isValid() - Method in class ome.model.containers.Folder
isValid() - Method in class ome.model.containers.FolderImageLink
isValid() - Method in class ome.model.containers.FolderRoiLink
isValid() - Method in class ome.model.containers.Project
isValid() - Method in class ome.model.containers.ProjectDatasetLink
isValid() - Method in class ome.model.core.Channel
isValid() - Method in class ome.model.core.Image
isValid() - Method in class ome.model.core.LogicalChannel
isValid() - Method in class ome.model.core.OriginalFile
isValid() - Method in class ome.model.core.Pixels
isValid() - Method in class ome.model.core.PixelsOriginalFileMap
isValid() - Method in class ome.model.core.PlaneInfo
isValid() - Method in class ome.model.display.ChannelBinding
isValid() - Method in class ome.model.display.CodomainMapContext
isValid() - Method in class ome.model.display.ContrastStretchingContext
isValid() - Method in class ome.model.display.PlaneSlicingContext
isValid() - Method in class ome.model.display.ProjectionDef
isValid() - Method in class ome.model.display.QuantumDef
isValid() - Method in class ome.model.display.RenderingDef
isValid() - Method in class ome.model.display.ReverseIntensityContext
isValid() - Method in class ome.model.display.Thumbnail
isValid() - Method in class ome.model.enums.AcquisitionMode
isValid() - Method in class ome.model.enums.AdminPrivilege
isValid() - Method in class ome.model.enums.ArcType
isValid() - Method in class ome.model.enums.Binning
isValid() - Method in class ome.model.enums.ChecksumAlgorithm
isValid() - Method in class ome.model.enums.ContrastMethod
isValid() - Method in class ome.model.enums.Correction
isValid() - Method in class ome.model.enums.DetectorType
isValid() - Method in class ome.model.enums.DimensionOrder
isValid() - Method in class ome.model.enums.EventType
isValid() - Method in class ome.model.enums.ExperimentType
isValid() - Method in class ome.model.enums.Family
isValid() - Method in class ome.model.enums.FilamentType
isValid() - Method in class ome.model.enums.FilterType
isValid() - Method in class ome.model.enums.Format
isValid() - Method in class ome.model.enums.Illumination
isValid() - Method in class ome.model.enums.Immersion
isValid() - Method in class ome.model.enums.LaserMedium
isValid() - Method in class ome.model.enums.LaserType
isValid() - Method in class ome.model.enums.Medium
isValid() - Method in class ome.model.enums.MicrobeamManipulationType
isValid() - Method in class ome.model.enums.MicroscopeType
isValid() - Method in class ome.model.enums.PhotometricInterpretation
isValid() - Method in class ome.model.enums.PixelsType
isValid() - Method in class ome.model.enums.ProjectionAxis
isValid() - Method in class ome.model.enums.ProjectionType
isValid() - Method in class ome.model.enums.Pulse
isValid() - Method in class ome.model.enums.RenderingModel
isValid() - Method in class ome.model.experiment.Experiment
isValid() - Method in class ome.model.experiment.MicrobeamManipulation
isValid() - Method in class ome.model.fs.Fileset
isValid() - Method in class ome.model.fs.FilesetEntry
isValid() - Method in class ome.model.fs.FilesetJobLink
isValid() - Method in class ome.model.internal.Link
isValid() - Method in interface ome.model.IObject: calls the class-specific validator for this instance and returns the value from Validation.isValid()
isValid() - Method in class ome.model.jobs.ImportJob: Deprecated.
isValid() - Method in class ome.model.jobs.IndexingJob
isValid() - Method in class ome.model.jobs.IntegrityCheckJob
isValid() - Method in class ome.model.jobs.Job
isValid() - Method in class ome.model.jobs.JobOriginalFileLink
isValid() - Method in class ome.model.jobs.JobStatus
isValid() - Method in class ome.model.jobs.MetadataImportJob
isValid() - Method in class ome.model.jobs.ParseJob
isValid() - Method in class ome.model.jobs.PixelDataJob
isValid() - Method in class ome.model.jobs.ScriptJob
isValid() - Method in class ome.model.jobs.ThumbnailGenerationJob
isValid() - Method in class ome.model.jobs.UploadJob
isValid() - Method in class ome.model.meta.DBPatch
isValid() - Method in class ome.model.meta.Event
isValid() - Method in class ome.model.meta.EventLog
isValid() - Method in class ome.model.meta.Experimenter
isValid() - Method in class ome.model.meta.ExperimenterGroup
isValid() - Method in class ome.model.meta.ExternalInfo
isValid() - Method in class ome.model.meta.GroupExperimenterMap
isValid() - Method in class ome.model.meta.Namespace
isValid() - Method in class ome.model.meta.Node
isValid() - Method in class ome.model.meta.Session
isValid() - Method in class ome.model.meta.Share
isValid() - Method in class ome.model.meta.ShareMember
isValid() - Method in class ome.model.roi.AffineTransform
isValid() - Method in class ome.model.roi.Ellipse
isValid() - Method in class ome.model.roi.Label
isValid() - Method in class ome.model.roi.Line
isValid() - Method in class ome.model.roi.Mask
isValid() - Method in class ome.model.roi.Path: Deprecated.
isValid() - Method in class ome.model.roi.Point
isValid() - Method in class ome.model.roi.Polygon
isValid() - Method in class ome.model.roi.Polyline
isValid() - Method in class ome.model.roi.Rectangle
isValid() - Method in class ome.model.roi.Roi
isValid() - Method in class ome.model.roi.Shape
isValid() - Method in class ome.model.screen.Plate
isValid() - Method in class ome.model.screen.PlateAcquisition
isValid() - Method in class ome.model.screen.Reagent
isValid() - Method in class ome.model.screen.Screen
isValid() - Method in class ome.model.screen.ScreenPlateLink
isValid() - Method in class ome.model.screen.Well
isValid() - Method in class ome.model.screen.WellReagentLink
isValid() - Method in class ome.model.screen.WellSample
isValid() - Method in class ome.model.stats.StatsInfo
isValid() - Method in class ome.util.PermDetails
isValid() - Method in class ome.util.Validation
itemCount - Variable in class ome.model.meta.Share
ITEMCOUNT - Static variable in class ome.model.meta.Share
iterateAnnotationLinks() - Method in class ome.model.acquisition.Detector: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.Dichroic: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.Filter: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.Instrument: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.LightPath: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.LightSource: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.Objective: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.annotations.Annotation: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.containers.Dataset: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.containers.Folder: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.containers.Project: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.core.Channel: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.core.Image: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.core.OriginalFile: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.core.PlaneInfo: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.fs.Fileset: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in interface ome.model.IAnnotated
iterateAnnotationLinks() - Method in class ome.model.meta.Experimenter: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.meta.Namespace: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.meta.Node: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.meta.Session: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.roi.Roi: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.roi.Shape: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.screen.Plate: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.screen.Reagent: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.screen.Screen: should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.screen.Well: should be used rather than accessing the annotationLinks set directly.
iterateChannels() - Method in class ome.model.core.LogicalChannel: should be used rather than accessing the channels set directly.
iterateChannels() - Method in class ome.model.core.Pixels: should be used rather than accessing the channels set directly.
iterateChildFolders() - Method in class ome.model.containers.Folder: should be used rather than accessing the childFolders set directly.
iterateDatasetLinks() - Method in class ome.model.containers.Project: should be used rather than accessing the datasetLinks set directly.
iterateDatasetLinks() - Method in class ome.model.core.Image: should be used rather than accessing the datasetLinks set directly.
iterateDetector() - Method in class ome.model.acquisition.Instrument: should be used rather than accessing the detector set directly.
iterateDichroic() - Method in class ome.model.acquisition.Instrument: should be used rather than accessing the dichroic set directly.
iterateEmissionFilterLink() - Method in class ome.model.acquisition.Filter: should be used rather than accessing the emissionFilterLink set directly.
iterateEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet: should be used rather than accessing the emissionFilterLink set directly.
iterateEmissionFilterLink() - Method in class ome.model.acquisition.LightPath: should be used rather than accessing the emissionFilterLink set directly.
iterateEvents() - Method in class ome.model.meta.Session: should be used rather than accessing the events set directly.
iterateExcitationFilterLink() - Method in class ome.model.acquisition.Filter: should be used rather than accessing the excitationFilterLink set directly.
iterateExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet: should be used rather than accessing the excitationFilterLink set directly.
iterateExcitationFilterLink() - Method in class ome.model.acquisition.LightPath: should be used rather than accessing the excitationFilterLink set directly.
iterateFilesetEntries() - Method in class ome.model.core.OriginalFile: should be used rather than accessing the filesetEntries set directly.
iterateFilter() - Method in class ome.model.acquisition.Instrument: should be used rather than accessing the filter set directly.
iterateFilterSet() - Method in class ome.model.acquisition.Instrument: should be used rather than accessing the filterSet set directly.
iterateFolderLinks() - Method in class ome.model.core.Image: should be used rather than accessing the folderLinks set directly.
iterateFolderLinks() - Method in class ome.model.roi.Roi: should be used rather than accessing the folderLinks set directly.
iterateGroupExperimenterMap() - Method in class ome.model.meta.Experimenter: should be used rather than accessing the groupExperimenterMap set directly.
iterateGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup: should be used rather than accessing the groupExperimenterMap set directly.
iterateImageLinks() - Method in class ome.model.containers.Dataset: should be used rather than accessing the imageLinks set directly.
iterateImageLinks() - Method in class ome.model.containers.Folder: should be used rather than accessing the imageLinks set directly.
iterateImages() - Method in class ome.model.fs.Fileset: should be used rather than accessing the images set directly.
iterateJobLinks() - Method in class ome.model.fs.Fileset: should be used rather than accessing the jobLinks set directly.
iterateLightSource() - Method in class ome.model.acquisition.Instrument: should be used rather than accessing the lightSource set directly.
iterateLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation: should be used rather than accessing the lightSourceSettings set directly.
iterateLogs() - Method in class ome.model.meta.Event: should be used rather than accessing the logs set directly.
iterateMicrobeamManipulation() - Method in class ome.model.experiment.Experiment: should be used rather than accessing the microbeamManipulation set directly.
iterateObjective() - Method in class ome.model.acquisition.Instrument: should be used rather than accessing the objective set directly.
iterateOriginalFileLinks() - Method in class ome.model.jobs.Job: should be used rather than accessing the originalFileLinks set directly.
iterateOtf() - Method in class ome.model.acquisition.Instrument: should be used rather than accessing the otf set directly.
iteratePixels() - Method in class ome.model.core.Image: should be used rather than accessing the pixels set directly.
iteratePixelsFileMaps() - Method in class ome.model.core.OriginalFile: should be used rather than accessing the pixelsFileMaps set directly.
iteratePixelsFileMaps() - Method in class ome.model.core.Pixels: should be used rather than accessing the pixelsFileMaps set directly.
iteratePlaneInfo() - Method in class ome.model.core.Pixels: should be used rather than accessing the planeInfo set directly.
iteratePlateAcquisitions() - Method in class ome.model.screen.Plate: should be used rather than accessing the plateAcquisitions set directly.
iteratePlateLinks() - Method in class ome.model.screen.Screen: should be used rather than accessing the plateLinks set directly.
iterateProjections() - Method in class ome.model.display.RenderingDef: should be used rather than accessing the projections set directly.
iterateProjectLinks() - Method in class ome.model.containers.Dataset: should be used rather than accessing the projectLinks set directly.
iterateReagentLinks() - Method in class ome.model.screen.Well: should be used rather than accessing the reagentLinks set directly.
iterateReagents() - Method in class ome.model.screen.Screen: should be used rather than accessing the reagents set directly.
iterateRoiLinks() - Method in class ome.model.containers.Folder: should be used rather than accessing the roiLinks set directly.
iterateRois() - Method in class ome.model.core.Image: should be used rather than accessing the rois set directly.
iterateScreenLinks() - Method in class ome.model.screen.Plate: should be used rather than accessing the screenLinks set directly.
iterateSessions() - Method in class ome.model.meta.Node: should be used rather than accessing the sessions set directly.
iterateSettings() - Method in class ome.model.core.Pixels: should be used rather than accessing the settings set directly.
iterateShapes() - Method in class ome.model.roi.Roi: should be used rather than accessing the shapes set directly.
iterateSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding: should be used rather than accessing the spatialDomainEnhancement set directly.
iterateThumbnails() - Method in class ome.model.core.Pixels: should be used rather than accessing the thumbnails set directly.
iterateUsedFiles() - Method in class ome.model.fs.Fileset: should be used rather than accessing the usedFiles set directly.
iterateWaveRendering() - Method in class ome.model.display.RenderingDef: should be used rather than accessing the waveRendering set directly.
iterateWellLinks() - Method in class ome.model.screen.Reagent: should be used rather than accessing the wellLinks set directly.
iterateWells() - Method in class ome.model.screen.Plate: should be used rather than accessing the wells set directly.
iterateWellSample() - Method in class ome.model.screen.PlateAcquisition: should be used rather than accessing the wellSample set directly.
iterateWellSamples() - Method in class ome.model.core.Image: should be used rather than accessing the wellSamples set directly.
iterateWellSamples() - Method in class ome.model.screen.Well: should be used rather than accessing the wellSamples set directly.

J

javaType - Variable in class ome.util.PixelData: The pixels type as it would be represented in Java.
javaType() - Method in class ome.util.PixelData: Returns the Java type that has the same byte width of the pixel data.
Job - Class in ome.model.jobs: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Job() - Constructor for class ome.model.jobs.Job
Job(Long) - Constructor for class ome.model.jobs.Job
Job(Long, boolean) - Constructor for class ome.model.jobs.Job: Main constructor.
Job(String, String, String, String, JobStatus, Timestamp, Timestamp) - Constructor for class ome.model.jobs.Job
Job.Details - Class in ome.model.jobs
jobLinks - Variable in class ome.model.fs.Fileset
JOBLINKS - Static variable in class ome.model.fs.Fileset
JOBLINKSCOUNTPEROWNER - Static variable in class ome.model.fs.Fileset
JobOriginalFileLink - Class in ome.model.jobs: These filter definitions are used by the security system to eliminate non-readable objects from queries.
JobOriginalFileLink() - Constructor for class ome.model.jobs.JobOriginalFileLink
JobOriginalFileLink(Long) - Constructor for class ome.model.jobs.JobOriginalFileLink
JobOriginalFileLink(Long, boolean) - Constructor for class ome.model.jobs.JobOriginalFileLink: Main constructor.
JobOriginalFileLink(IObject, IObject) - Constructor for class ome.model.jobs.JobOriginalFileLink
JobOriginalFileLink.Details - Class in ome.model.jobs
JobStatus - Class in ome.model.jobs
JobStatus() - Constructor for class ome.model.jobs.JobStatus
JobStatus(Long) - Constructor for class ome.model.jobs.JobStatus
JobStatus(Long, boolean) - Constructor for class ome.model.jobs.JobStatus: Main constructor.
JobStatus(String) - Constructor for class ome.model.jobs.JobStatus
JobStatus.Details - Class in ome.model.jobs
JVST_IDENTIFIER - Static variable in class ome.util.Utils

K

KELVIN - ome.model.enums.UnitsTemperature
keySet() - Method in class ome.parameters.Parameters: the Set of all names which would would return a non-null value from Parameters.get(String)
keywords - Variable in class ome.model.meta.Namespace
KEYWORDS - Static variable in class ome.model.meta.Namespace
KILOBAR - ome.model.enums.UnitsPressure
KILOHERTZ - ome.model.enums.UnitsFrequency
KILOMETER - ome.model.enums.UnitsLength
KILOPASCAL - ome.model.enums.UnitsPressure
KILOSECOND - ome.model.enums.UnitsTime
KILOVOLT - ome.model.enums.UnitsElectricPotential
KILOWATT - ome.model.enums.UnitsPower

L

Label - Class in ome.model.roi
Label() - Constructor for class ome.model.roi.Label
Label(Long) - Constructor for class ome.model.roi.Label
Label(Long, boolean) - Constructor for class ome.model.roi.Label: Main constructor.
Laser - Class in ome.model.acquisition
Laser() - Constructor for class ome.model.acquisition.Laser
Laser(Long) - Constructor for class ome.model.acquisition.Laser
Laser(Long, boolean) - Constructor for class ome.model.acquisition.Laser: Main constructor.
Laser(LaserType, LaserMedium) - Constructor for class ome.model.acquisition.Laser
laserMedium - Variable in class ome.model.acquisition.Laser
LaserMedium - Class in ome.model.enums
LaserMedium() - Constructor for class ome.model.enums.LaserMedium
LaserMedium(Long) - Constructor for class ome.model.enums.LaserMedium
LaserMedium(Long, boolean) - Constructor for class ome.model.enums.LaserMedium: Main constructor.
LaserMedium(String) - Constructor for class ome.model.enums.LaserMedium
LASERMEDIUM - Static variable in class ome.model.acquisition.Laser
LaserMedium.Details - Class in ome.model.enums
LaserType - Class in ome.model.enums
LaserType() - Constructor for class ome.model.enums.LaserType
LaserType(Long) - Constructor for class ome.model.enums.LaserType
LaserType(Long, boolean) - Constructor for class ome.model.enums.LaserType: Main constructor.
LaserType(String) - Constructor for class ome.model.enums.LaserType
LaserType.Details - Class in ome.model.enums
lastName - Variable in class ome.model.meta.Experimenter
LASTNAME - Static variable in class ome.model.meta.Experimenter
ldap - Variable in class ome.model.meta.Experimenter
ldap - Variable in class ome.model.meta.ExperimenterGroup
LDAP - Static variable in class ome.model.meta.Experimenter
LDAP - Static variable in class ome.model.meta.ExperimenterGroup
leaves - Variable in class ome.parameters.Options
leaves() - Method in class ome.parameters.Parameters
Length - Class in ome.model.units: class storing both a Length and a unit for that Length (e.g.
Length() - Constructor for class ome.model.units.Length: Deprecated.
Length(double, String) - Constructor for class ome.model.units.Length
Length(double, UnitsLength) - Constructor for class ome.model.units.Length
Length(double, Unit<Length>) - Constructor for class ome.model.units.Length
Length(Length) - Constructor for class ome.model.units.Length
LENGTH - ome.model.units.UNITS
lensNA - Variable in class ome.model.acquisition.Objective
LENSNA - Static variable in class ome.model.acquisition.Objective
LightEmittingDiode - Class in ome.model.acquisition
LightEmittingDiode() - Constructor for class ome.model.acquisition.LightEmittingDiode
LightEmittingDiode(Long) - Constructor for class ome.model.acquisition.LightEmittingDiode
LightEmittingDiode(Long, boolean) - Constructor for class ome.model.acquisition.LightEmittingDiode: Main constructor.
lightPath - Variable in class ome.model.core.LogicalChannel
LightPath - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightPath() - Constructor for class ome.model.acquisition.LightPath
LightPath(Long) - Constructor for class ome.model.acquisition.LightPath
LightPath(Long, boolean) - Constructor for class ome.model.acquisition.LightPath: Main constructor.
LIGHTPATH - Static variable in class ome.model.core.LogicalChannel
LightPath.Details - Class in ome.model.acquisition
LightPathAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightPathAnnotationLink() - Constructor for class ome.model.annotations.LightPathAnnotationLink
LightPathAnnotationLink(Long) - Constructor for class ome.model.annotations.LightPathAnnotationLink
LightPathAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.LightPathAnnotationLink: Main constructor.
LightPathAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.LightPathAnnotationLink
LightPathAnnotationLink.Details - Class in ome.model.annotations
LightPathEmissionFilterLink - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightPathEmissionFilterLink() - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink
LightPathEmissionFilterLink(Long) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink
LightPathEmissionFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink: Main constructor.
LightPathEmissionFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink
LightPathEmissionFilterLink.Details - Class in ome.model.acquisition
LightPathExcitationFilterLink - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightPathExcitationFilterLink() - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink
LightPathExcitationFilterLink(Long) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink
LightPathExcitationFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink: Main constructor.
LightPathExcitationFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink
LightPathExcitationFilterLink.Details - Class in ome.model.acquisition
LightSettings - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightSettings() - Constructor for class ome.model.acquisition.LightSettings
LightSettings(Long) - Constructor for class ome.model.acquisition.LightSettings
LightSettings(Long, boolean) - Constructor for class ome.model.acquisition.LightSettings: Main constructor.
LightSettings(LightSource) - Constructor for class ome.model.acquisition.LightSettings
LightSettings.Details - Class in ome.model.acquisition
lightSource - Variable in class ome.model.acquisition.Instrument
lightSource - Variable in class ome.model.acquisition.LightSettings
LightSource - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightSource() - Constructor for class ome.model.acquisition.LightSource
LightSource(Long) - Constructor for class ome.model.acquisition.LightSource
LightSource(Long, boolean) - Constructor for class ome.model.acquisition.LightSource: Main constructor.
LightSource(Instrument) - Constructor for class ome.model.acquisition.LightSource
LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
LIGHTSOURCE - Static variable in class ome.model.acquisition.LightSettings
LightSource.Details - Class in ome.model.acquisition
LightSourceAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightSourceAnnotationLink() - Constructor for class ome.model.annotations.LightSourceAnnotationLink
LightSourceAnnotationLink(Long) - Constructor for class ome.model.annotations.LightSourceAnnotationLink
LightSourceAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.LightSourceAnnotationLink: Main constructor.
LightSourceAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.LightSourceAnnotationLink
LightSourceAnnotationLink.Details - Class in ome.model.annotations
lightSourceSettings - Variable in class ome.model.core.LogicalChannel
lightSourceSettings - Variable in class ome.model.experiment.MicrobeamManipulation
LIGHTSOURCESETTINGS - Static variable in class ome.model.core.LogicalChannel
LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
LIGHTYEAR - ome.model.enums.UnitsLength
limit - Variable in class ome.parameters.Filter
Line - Class in ome.model.roi
Line() - Constructor for class ome.model.roi.Line
Line(Long) - Constructor for class ome.model.roi.Line
Line(Long, boolean) - Constructor for class ome.model.roi.Line: Main constructor.
LINE - ome.model.enums.UnitsLength
link(Detector, Annotation) - Method in class ome.model.annotations.DetectorAnnotationLink
link(Dichroic, Annotation) - Method in class ome.model.annotations.DichroicAnnotationLink
link(Filter, Annotation) - Method in class ome.model.annotations.FilterAnnotationLink
link(FilterSet, Filter) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
link(FilterSet, Filter) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
link(Instrument, Annotation) - Method in class ome.model.annotations.InstrumentAnnotationLink
link(LightPath, Filter) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
link(LightPath, Filter) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
link(LightPath, Annotation) - Method in class ome.model.annotations.LightPathAnnotationLink
link(LightSource, Annotation) - Method in class ome.model.annotations.LightSourceAnnotationLink
link(Objective, Annotation) - Method in class ome.model.annotations.ObjectiveAnnotationLink
link(Annotation, Annotation) - Method in class ome.model.annotations.AnnotationAnnotationLink
link(Dataset, Annotation) - Method in class ome.model.annotations.DatasetAnnotationLink
link(Dataset, Image) - Method in class ome.model.containers.DatasetImageLink
link(Folder, Annotation) - Method in class ome.model.annotations.FolderAnnotationLink
link(Folder, Image) - Method in class ome.model.containers.FolderImageLink
link(Folder, Roi) - Method in class ome.model.containers.FolderRoiLink
link(Project, Annotation) - Method in class ome.model.annotations.ProjectAnnotationLink
link(Project, Dataset) - Method in class ome.model.containers.ProjectDatasetLink
link(Channel, Annotation) - Method in class ome.model.annotations.ChannelAnnotationLink
link(Image, Annotation) - Method in class ome.model.annotations.ImageAnnotationLink
link(OriginalFile, Annotation) - Method in class ome.model.annotations.OriginalFileAnnotationLink
link(OriginalFile, Pixels) - Method in class ome.model.core.PixelsOriginalFileMap
link(PlaneInfo, Annotation) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
link(Fileset, Annotation) - Method in class ome.model.annotations.FilesetAnnotationLink
link(Fileset, Job) - Method in class ome.model.fs.FilesetJobLink
link(Job, OriginalFile) - Method in class ome.model.jobs.JobOriginalFileLink
link(ExperimenterGroup, Annotation) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
link(ExperimenterGroup, Experimenter) - Method in class ome.model.meta.GroupExperimenterMap
link(Experimenter, Annotation) - Method in class ome.model.annotations.ExperimenterAnnotationLink
link(Namespace, Annotation) - Method in class ome.model.annotations.NamespaceAnnotationLink
link(Node, Annotation) - Method in class ome.model.annotations.NodeAnnotationLink
link(Session, Annotation) - Method in class ome.model.annotations.SessionAnnotationLink
link(Share, Experimenter) - Method in class ome.model.meta.ShareMember
link(Roi, Annotation) - Method in class ome.model.annotations.RoiAnnotationLink
link(Shape, Annotation) - Method in class ome.model.annotations.ShapeAnnotationLink
link(PlateAcquisition, Annotation) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
link(Plate, Annotation) - Method in class ome.model.annotations.PlateAnnotationLink
link(Reagent, Annotation) - Method in class ome.model.annotations.ReagentAnnotationLink
link(Screen, Annotation) - Method in class ome.model.annotations.ScreenAnnotationLink
link(Screen, Plate) - Method in class ome.model.screen.ScreenPlateLink
link(Well, Annotation) - Method in class ome.model.annotations.WellAnnotationLink
link(Well, Reagent) - Method in class ome.model.screen.WellReagentLink
Link - Class in ome.model.internal: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Link() - Constructor for class ome.model.internal.Link
Link(Long) - Constructor for class ome.model.internal.Link
Link(Long, boolean) - Constructor for class ome.model.internal.Link: Main constructor.
Link.Details - Class in ome.model.internal
linkAnnotation(Annotation) - Method in class ome.model.acquisition.Detector: Adds a ome.model.annotations.DetectorAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.Dichroic: Adds a ome.model.annotations.DichroicAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.Filter: Adds a ome.model.annotations.FilterAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.Instrument: Adds a ome.model.annotations.InstrumentAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.LightPath: Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.LightSource: Adds a ome.model.annotations.LightSourceAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.Objective: Adds a ome.model.annotations.ObjectiveAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.annotations.Annotation: Adds a ome.model.annotations.AnnotationAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.containers.Dataset: Adds a ome.model.annotations.DatasetAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.containers.Folder: Adds a ome.model.annotations.FolderAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.containers.Project: Adds a ome.model.annotations.ProjectAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.core.Channel: Adds a ome.model.annotations.ChannelAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.core.Image: Adds a ome.model.annotations.ImageAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.core.OriginalFile: Adds a ome.model.annotations.OriginalFileAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.core.PlaneInfo: Adds a ome.model.annotations.PlaneInfoAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.fs.Fileset: Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in interface ome.model.IAnnotated
linkAnnotation(Annotation) - Method in class ome.model.meta.Experimenter: Adds a ome.model.annotations.ExperimenterAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.meta.ExperimenterGroup: Adds a ome.model.annotations.ExperimenterGroupAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.meta.Namespace: Adds a ome.model.annotations.NamespaceAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.meta.Node: Adds a ome.model.annotations.NodeAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.meta.Session: Adds a ome.model.annotations.SessionAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.roi.Roi: Adds a ome.model.annotations.RoiAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.roi.Shape: Adds a ome.model.annotations.ShapeAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.screen.Plate: Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.screen.PlateAcquisition: Adds a ome.model.annotations.PlateAcquisitionAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.screen.Reagent: Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.screen.Screen: Adds a ome.model.annotations.ScreenAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.screen.Well: Adds a ome.model.annotations.WellAnnotationLink to annotationLinks .
linkDataset(Dataset) - Method in class ome.model.containers.Project: Adds a ome.model.containers.ProjectDatasetLink to datasetLinks .
linkDataset(Dataset) - Method in class ome.model.core.Image: Adds a ome.model.containers.DatasetImageLink to datasetLinks .
linkedAnnotationIterator() - Method in class ome.model.acquisition.Detector: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.Dichroic: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.Filter: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.Instrument: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.LightPath: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.LightSource: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.Objective: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.annotations.Annotation: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.containers.Dataset: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.containers.Folder: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.containers.Project: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.core.Channel: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.core.Image: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.core.OriginalFile: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.core.PlaneInfo: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.fs.Fileset: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in interface ome.model.IAnnotated
linkedAnnotationIterator() - Method in class ome.model.meta.Experimenter: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.meta.ExperimenterGroup: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.meta.Namespace: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.meta.Node: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.meta.Session: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.roi.Roi: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.roi.Shape: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.screen.Plate: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.screen.PlateAcquisition: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.screen.Reagent: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.screen.Screen: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.screen.Well: provides an iterator over the parent values of the annotationLinks.
linkedAnnotationList() - Method in class ome.model.acquisition.Detector: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.Dichroic: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.Filter: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.Instrument: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.LightPath: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.LightSource: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.Objective: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.annotations.Annotation: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.containers.Dataset: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.containers.Folder: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.containers.Project: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.core.Channel: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.core.Image: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.core.OriginalFile: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.core.PlaneInfo: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.fs.Fileset: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in interface ome.model.IAnnotated
linkedAnnotationList() - Method in class ome.model.meta.Experimenter: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.meta.ExperimenterGroup: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.meta.Namespace: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.meta.Node: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.meta.Session: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.roi.Roi: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.roi.Shape: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.screen.Plate: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.screen.PlateAcquisition: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.screen.Reagent: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.screen.Screen: produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.screen.Well: produces a List-copy of the underlying collection.
linkedDatasetIterator() - Method in class ome.model.containers.Project: provides an iterator over the parent values of the datasetLinks.
linkedDatasetIterator() - Method in class ome.model.core.Image: provides an iterator over the child values of the datasetLinks.
linkedDatasetList() - Method in class ome.model.containers.Project: produces a List-copy of the underlying collection.
linkedDatasetList() - Method in class ome.model.core.Image: produces a List-copy of the underlying collection.
linkedEmissionFilterIterator() - Method in class ome.model.acquisition.Filter: provides an iterator over the child values of the emissionFilterLink.
linkedEmissionFilterIterator() - Method in class ome.model.acquisition.FilterSet: provides an iterator over the parent values of the emissionFilterLink.
linkedEmissionFilterIterator() - Method in class ome.model.acquisition.LightPath: provides an iterator over the parent values of the emissionFilterLink.
linkedEmissionFilterList() - Method in class ome.model.acquisition.Filter: produces a List-copy of the underlying collection.
linkedEmissionFilterList() - Method in class ome.model.acquisition.FilterSet: produces a List-copy of the underlying collection.
linkedEmissionFilterList() - Method in class ome.model.acquisition.LightPath: produces a List-copy of the underlying collection.
linkedExcitationFilterIterator() - Method in class ome.model.acquisition.Filter: provides an iterator over the child values of the excitationFilterLink.
linkedExcitationFilterIterator() - Method in class ome.model.acquisition.FilterSet: provides an iterator over the parent values of the excitationFilterLink.
linkedExcitationFilterIterator() - Method in class ome.model.acquisition.LightPath: provides an iterator over the parent values of the excitationFilterLink.
linkedExcitationFilterList() - Method in class ome.model.acquisition.Filter: produces a List-copy of the underlying collection.
linkedExcitationFilterList() - Method in class ome.model.acquisition.FilterSet: produces a List-copy of the underlying collection.
linkedExcitationFilterList() - Method in class ome.model.acquisition.LightPath: produces a List-copy of the underlying collection.
linkedExperimenterGroupIterator() - Method in class ome.model.meta.Experimenter: provides an iterator over the child values of the groupExperimenterMap.
linkedExperimenterGroupList() - Method in class ome.model.meta.Experimenter: produces a List-copy of the underlying collection.
linkedExperimenterIterator() - Method in class ome.model.meta.ExperimenterGroup: provides an iterator over the parent values of the groupExperimenterMap.
linkedExperimenterList() - Method in class ome.model.meta.ExperimenterGroup: produces a List-copy of the underlying collection.
linkedFolderIterator() - Method in class ome.model.core.Image: provides an iterator over the child values of the folderLinks.
linkedFolderIterator() - Method in class ome.model.roi.Roi: provides an iterator over the child values of the folderLinks.
linkedFolderList() - Method in class ome.model.core.Image: produces a List-copy of the underlying collection.
linkedFolderList() - Method in class ome.model.roi.Roi: produces a List-copy of the underlying collection.
linkedImageIterator() - Method in class ome.model.containers.Dataset: provides an iterator over the parent values of the imageLinks.
linkedImageIterator() - Method in class ome.model.containers.Folder: provides an iterator over the parent values of the imageLinks.
linkedImageList() - Method in class ome.model.containers.Dataset: produces a List-copy of the underlying collection.
linkedImageList() - Method in class ome.model.containers.Folder: produces a List-copy of the underlying collection.
linkedJobIterator() - Method in class ome.model.fs.Fileset: provides an iterator over the parent values of the jobLinks.
linkedJobList() - Method in class ome.model.fs.Fileset: produces a List-copy of the underlying collection.
linkedOriginalFileIterator() - Method in class ome.model.core.Pixels: provides an iterator over the child values of the pixelsFileMaps.
linkedOriginalFileIterator() - Method in class ome.model.jobs.Job: provides an iterator over the parent values of the originalFileLinks.
linkedOriginalFileList() - Method in class ome.model.core.Pixels: produces a List-copy of the underlying collection.
linkedOriginalFileList() - Method in class ome.model.jobs.Job: produces a List-copy of the underlying collection.
linkedPixelsIterator() - Method in class ome.model.core.OriginalFile: provides an iterator over the parent values of the pixelsFileMaps.
linkedPixelsList() - Method in class ome.model.core.OriginalFile: produces a List-copy of the underlying collection.
linkedPlateIterator() - Method in class ome.model.screen.Screen: provides an iterator over the parent values of the plateLinks.
linkedPlateList() - Method in class ome.model.screen.Screen: produces a List-copy of the underlying collection.
linkedProjectIterator() - Method in class ome.model.containers.Dataset: provides an iterator over the child values of the projectLinks.
linkedProjectList() - Method in class ome.model.containers.Dataset: produces a List-copy of the underlying collection.
linkedReagentIterator() - Method in class ome.model.screen.Well: provides an iterator over the parent values of the reagentLinks.
linkedReagentList() - Method in class ome.model.screen.Well: produces a List-copy of the underlying collection.
linkedRoiIterator() - Method in class ome.model.containers.Folder: provides an iterator over the parent values of the roiLinks.
linkedRoiList() - Method in class ome.model.containers.Folder: produces a List-copy of the underlying collection.
linkedScreenIterator() - Method in class ome.model.screen.Plate: provides an iterator over the child values of the screenLinks.
linkedScreenList() - Method in class ome.model.screen.Plate: produces a List-copy of the underlying collection.
linkedWellIterator() - Method in class ome.model.screen.Reagent: provides an iterator over the child values of the wellLinks.
linkedWellList() - Method in class ome.model.screen.Reagent: produces a List-copy of the underlying collection.
linkEmissionFilter(Filter) - Method in class ome.model.acquisition.FilterSet: Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink .
linkEmissionFilter(Filter) - Method in class ome.model.acquisition.LightPath: Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink .
linkEmissionFilter(FilterSet) - Method in class ome.model.acquisition.Filter: Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink .
linkExcitationFilter(Filter) - Method in class ome.model.acquisition.FilterSet: Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink .
linkExcitationFilter(Filter) - Method in class ome.model.acquisition.LightPath: Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink .
linkExcitationFilter(FilterSet) - Method in class ome.model.acquisition.Filter: Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink .
linkExperimenter(Experimenter) - Method in class ome.model.meta.ExperimenterGroup: Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap .
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.model.meta.Experimenter: Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap .
linkFolder(Folder) - Method in class ome.model.core.Image: Adds a ome.model.containers.FolderImageLink to folderLinks .
linkFolder(Folder) - Method in class ome.model.roi.Roi: Adds a ome.model.containers.FolderRoiLink to folderLinks .
linkImage(Image) - Method in class ome.model.containers.Dataset: Adds a ome.model.containers.DatasetImageLink to imageLinks .
linkImage(Image) - Method in class ome.model.containers.Folder: Adds a ome.model.containers.FolderImageLink to imageLinks .
linkJob(Job) - Method in class ome.model.fs.Fileset: Adds a ome.model.fs.FilesetJobLink to jobLinks .
linkOriginalFile(OriginalFile) - Method in class ome.model.core.Pixels: Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps .
linkOriginalFile(OriginalFile) - Method in class ome.model.jobs.Job: Adds a ome.model.jobs.JobOriginalFileLink to originalFileLinks .
linkPixels(Pixels) - Method in class ome.model.core.OriginalFile: Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps .
linkPlate(Plate) - Method in class ome.model.screen.Screen: Adds a ome.model.screen.ScreenPlateLink to plateLinks .
linkProject(Project) - Method in class ome.model.containers.Dataset: Adds a ome.model.containers.ProjectDatasetLink to projectLinks .
linkReagent(Reagent) - Method in class ome.model.screen.Well: Adds a ome.model.screen.WellReagentLink to reagentLinks .
LINKRESTRICTION - Static variable in class ome.model.internal.Permissions
linkRoi(Roi) - Method in class ome.model.containers.Folder: Adds a ome.model.containers.FolderRoiLink to roiLinks .
linkScreen(Screen) - Method in class ome.model.screen.Plate: Adds a ome.model.screen.ScreenPlateLink to screenLinks .
linkWell(Well) - Method in class ome.model.screen.Reagent: Adds a ome.model.screen.WellReagentLink to wellLinks .
ListAnnotation - Class in ome.model.annotations
ListAnnotation() - Constructor for class ome.model.annotations.ListAnnotation
ListAnnotation(Long) - Constructor for class ome.model.annotations.ListAnnotation
ListAnnotation(Long, boolean) - Constructor for class ome.model.annotations.ListAnnotation: Main constructor.
listSqlTypes() - Static method in enum ome.model.units.UNITS
lock() - Static method in class ome.util.DetailsFieldBridge
locked - Variable in class ome.model.roi.Shape
LOCKED - Static variable in class ome.model.roi.Shape
LockTimeout - Exception in ome.conditions: Server could not acquire necessary lock.
LockTimeout(String, long, int) - Constructor for exception ome.conditions.LockTimeout
log - Static variable in class ome.util.ModelMapper
log - Variable in class ome.util.SqlAction.Impl
log - Static variable in class ome.util.Validation
log - Static variable in class ome.util.Validator
LoggingSqlAction() - Constructor for class ome.util.SqlAction.LoggingSqlAction
logicalChannel - Variable in class ome.model.core.Channel
LogicalChannel - Class in ome.model.core: These filter definitions are used by the security system to eliminate non-readable objects from queries.
LogicalChannel() - Constructor for class ome.model.core.LogicalChannel
LogicalChannel(Long) - Constructor for class ome.model.core.LogicalChannel
LogicalChannel(Long, boolean) - Constructor for class ome.model.core.LogicalChannel: Main constructor.
LOGICALCHANNEL - Static variable in class ome.model.core.Channel
LogicalChannel.Details - Class in ome.model.core
logs - Variable in class ome.model.meta.Event
LOGS - Static variable in class ome.model.meta.Event
LONG - Static variable in class ome.util.PixelData: Identifies the type used to store pixel values.
LongAnnotation - Class in ome.model.annotations
LongAnnotation() - Constructor for class ome.model.annotations.LongAnnotation
LongAnnotation(Long) - Constructor for class ome.model.annotations.LongAnnotation
LongAnnotation(Long, boolean) - Constructor for class ome.model.annotations.LongAnnotation: Main constructor.
longValue - Variable in class ome.model.annotations.LongAnnotation
LONGVALUE - Static variable in class ome.model.annotations.LongAnnotation
lookupTable - Variable in class ome.model.core.Channel
lookupTable - Variable in class ome.model.display.ChannelBinding
LOOKUPTABLE - Static variable in class ome.model.core.Channel
LOOKUPTABLE - Static variable in class ome.model.display.ChannelBinding
lotNumber - Variable in class ome.model.acquisition.Detector
lotNumber - Variable in class ome.model.acquisition.Dichroic
lotNumber - Variable in class ome.model.acquisition.Filter
lotNumber - Variable in class ome.model.acquisition.FilterSet
lotNumber - Variable in class ome.model.acquisition.LightSource
lotNumber - Variable in class ome.model.acquisition.Microscope
lotNumber - Variable in class ome.model.acquisition.Objective
LOTNUMBER - Static variable in class ome.model.acquisition.Detector
LOTNUMBER - Static variable in class ome.model.acquisition.Dichroic
LOTNUMBER - Static variable in class ome.model.acquisition.Filter
LOTNUMBER - Static variable in class ome.model.acquisition.FilterSet
LOTNUMBER - Static variable in class ome.model.acquisition.LightSource
LOTNUMBER - Static variable in class ome.model.acquisition.Microscope
LOTNUMBER - Static variable in class ome.model.acquisition.Objective
lowerLimit - Variable in class ome.model.display.PlaneSlicingContext
LOWERLIMIT - Static variable in class ome.model.display.PlaneSlicingContext
lsid - Variable in class ome.model.meta.ExternalInfo
LSID - Class in ome.util: This class represents an LSID as used by the OME-XML data model.
LSID - Static variable in class ome.model.meta.ExternalInfo
LSID(Class, int...) - Constructor for class ome.util.LSID: Default constructor.
LSID(String) - Constructor for class ome.util.LSID: Constructor for non-standard LSIDs.
LSID(String, boolean) - Constructor for class ome.util.LSID: Constructor for standard LSIDs that should be parsed.

M

makeElectricPotentialUnitXML(String) - Static method in class ome.model.units.ElectricPotential
makeElectricPotentialXML(double, String) - Static method in class ome.model.units.ElectricPotential
makeFrequencyUnitXML(String) - Static method in class ome.model.units.Frequency
makeFrequencyXML(double, String) - Static method in class ome.model.units.Frequency
makeLengthUnitXML(String) - Static method in class ome.model.units.Length
makeLengthXML(double, String) - Static method in class ome.model.units.Length
makePowerUnitXML(String) - Static method in class ome.model.units.Power
makePowerXML(double, String) - Static method in class ome.model.units.Power
makePressureUnitXML(String) - Static method in class ome.model.units.Pressure
makePressureXML(double, String) - Static method in class ome.model.units.Pressure
makeTemperatureUnitXML(String) - Static method in class ome.model.units.Temperature
makeTemperatureXML(double, String) - Static method in class ome.model.units.Temperature
makeTimeUnitXML(String) - Static method in class ome.model.units.Time
makeTimeXML(double, String) - Static method in class ome.model.units.Time
manufacturer - Variable in class ome.model.acquisition.Detector
manufacturer - Variable in class ome.model.acquisition.Dichroic
manufacturer - Variable in class ome.model.acquisition.Filter
manufacturer - Variable in class ome.model.acquisition.FilterSet
manufacturer - Variable in class ome.model.acquisition.LightSource
manufacturer - Variable in class ome.model.acquisition.Microscope
manufacturer - Variable in class ome.model.acquisition.Objective
MANUFACTURER - Static variable in class ome.model.acquisition.Detector
MANUFACTURER - Static variable in class ome.model.acquisition.Dichroic
MANUFACTURER - Static variable in class ome.model.acquisition.Filter
MANUFACTURER - Static variable in class ome.model.acquisition.FilterSet
MANUFACTURER - Static variable in class ome.model.acquisition.LightSource
MANUFACTURER - Static variable in class ome.model.acquisition.Microscope
MANUFACTURER - Static variable in class ome.model.acquisition.Objective
map - Variable in class ome.model.acquisition.GenericExcitationSource
map - Variable in class ome.model.acquisition.ImagingEnvironment
map(Collection) - Method in class ome.util.ModelMapper
map(Map) - Method in class ome.util.ModelMapper
map(Filterable) - Method in class ome.util.ModelMapper
MAP - Static variable in class ome.model.acquisition.GenericExcitationSource
MAP - Static variable in class ome.model.acquisition.ImagingEnvironment
MapAnnotation - Class in ome.model.annotations
MapAnnotation() - Constructor for class ome.model.annotations.MapAnnotation
MapAnnotation(Long) - Constructor for class ome.model.annotations.MapAnnotation
MapAnnotation(Long, boolean) - Constructor for class ome.model.annotations.MapAnnotation: Main constructor.
MapPut - Class in ome.util: Simple bean which calls "map.put(key, object)" on InitializingBean.afterPropertiesSet().
MapPut() - Constructor for class ome.util.MapPut
mapRow(ResultSet, int) - Method in class ome.util.SqlAction.DeleteLog
mapRow(ResultSet, int) - Method in class ome.util.SqlAction.IdRowMapper
mapRow(ResultSet, int) - Method in class ome.util.SqlAction.StringRowMapper
mapValue - Variable in class ome.model.annotations.MapAnnotation
MAPVALUE - Static variable in class ome.model.annotations.MapAnnotation
markerEnd - Variable in class ome.model.roi.Line
markerEnd - Variable in class ome.model.roi.Polyline
MARKEREND - Static variable in class ome.model.roi.Line
MARKEREND - Static variable in class ome.model.roi.Polyline
markerStart - Variable in class ome.model.roi.Line
markerStart - Variable in class ome.model.roi.Polyline
MARKERSTART - Static variable in class ome.model.roi.Line
MARKERSTART - Static variable in class ome.model.roi.Polyline
Mask - Class in ome.model.roi
Mask() - Constructor for class ome.model.roi.Mask
Mask(Long) - Constructor for class ome.model.roi.Mask
Mask(Long, boolean) - Constructor for class ome.model.roi.Mask: Main constructor.
MAX_IN_SIZE - Static variable in class ome.util.SqlAction.Impl
maximum - Variable in class ome.util.PixelData: The maximum pixel value for the pixels type of the pixel data.
maximumFieldCount - Variable in class ome.model.screen.PlateAcquisition
MAXIMUMFIELDCOUNT - Static variable in class ome.model.screen.PlateAcquisition
medium - Variable in class ome.model.acquisition.ObjectiveSettings
Medium - Class in ome.model.enums
Medium() - Constructor for class ome.model.enums.Medium
Medium(Long) - Constructor for class ome.model.enums.Medium
Medium(Long, boolean) - Constructor for class ome.model.enums.Medium: Main constructor.
Medium(String) - Constructor for class ome.model.enums.Medium
MEDIUM - Static variable in class ome.model.acquisition.ObjectiveSettings
Medium.Details - Class in ome.model.enums
MEGABAR - ome.model.enums.UnitsPressure
MEGAHERTZ - ome.model.enums.UnitsFrequency
MEGAMETER - ome.model.enums.UnitsLength
MEGAPASCAL - ome.model.enums.UnitsPressure
MEGASECOND - ome.model.enums.UnitsTime
MEGAVOLT - ome.model.enums.UnitsElectricPotential
MEGAWATT - ome.model.enums.UnitsPower
message - Variable in class ome.model.jobs.Job
message - Variable in class ome.model.meta.DBPatch
message - Variable in class ome.model.meta.Session
MESSAGE - Static variable in class ome.model.jobs.Job
MESSAGE - Static variable in class ome.model.meta.DBPatch
MESSAGE - Static variable in class ome.model.meta.Session
MetadataImportJob - Class in ome.model.jobs
MetadataImportJob() - Constructor for class ome.model.jobs.MetadataImportJob
MetadataImportJob(Long) - Constructor for class ome.model.jobs.MetadataImportJob
MetadataImportJob(Long, boolean) - Constructor for class ome.model.jobs.MetadataImportJob: Main constructor.
METER - ome.model.enums.UnitsLength
methodology - Variable in class ome.model.core.Pixels
METHODOLOGY - Static variable in class ome.model.core.Pixels
microbeamManipulation - Variable in class ome.model.acquisition.LightSettings
microbeamManipulation - Variable in class ome.model.experiment.Experiment
MicrobeamManipulation - Class in ome.model.experiment: These filter definitions are used by the security system to eliminate non-readable objects from queries.
MicrobeamManipulation() - Constructor for class ome.model.experiment.MicrobeamManipulation
MicrobeamManipulation(Long) - Constructor for class ome.model.experiment.MicrobeamManipulation
MicrobeamManipulation(Long, boolean) - Constructor for class ome.model.experiment.MicrobeamManipulation: Main constructor.
MicrobeamManipulation(MicrobeamManipulationType, Experiment) - Constructor for class ome.model.experiment.MicrobeamManipulation
MICROBEAMMANIPULATION - Static variable in class ome.model.acquisition.LightSettings
MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
MicrobeamManipulation.Details - Class in ome.model.experiment
MicrobeamManipulationType - Class in ome.model.enums
MicrobeamManipulationType() - Constructor for class ome.model.enums.MicrobeamManipulationType
MicrobeamManipulationType(Long) - Constructor for class ome.model.enums.MicrobeamManipulationType
MicrobeamManipulationType(Long, boolean) - Constructor for class ome.model.enums.MicrobeamManipulationType: Main constructor.
MicrobeamManipulationType(String) - Constructor for class ome.model.enums.MicrobeamManipulationType
MicrobeamManipulationType.Details - Class in ome.model.enums
MICROHERTZ - ome.model.enums.UnitsFrequency
MICROMETER - ome.model.enums.UnitsLength
MICROPASCAL - ome.model.enums.UnitsPressure
microscope - Variable in class ome.model.acquisition.Instrument
Microscope - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Microscope() - Constructor for class ome.model.acquisition.Microscope
Microscope(Long) - Constructor for class ome.model.acquisition.Microscope
Microscope(Long, boolean) - Constructor for class ome.model.acquisition.Microscope: Main constructor.
Microscope(MicroscopeType) - Constructor for class ome.model.acquisition.Microscope
MICROSCOPE - Static variable in class ome.model.acquisition.Instrument
Microscope.Details - Class in ome.model.acquisition
MicroscopeType - Class in ome.model.enums
MicroscopeType() - Constructor for class ome.model.enums.MicroscopeType
MicroscopeType(Long) - Constructor for class ome.model.enums.MicroscopeType
MicroscopeType(Long, boolean) - Constructor for class ome.model.enums.MicroscopeType: Main constructor.
MicroscopeType(String) - Constructor for class ome.model.enums.MicroscopeType
MicroscopeType.Details - Class in ome.model.enums
MICROSECOND - ome.model.enums.UnitsTime
MICROVOLT - ome.model.enums.UnitsElectricPotential
MICROWATT - ome.model.enums.UnitsPower
middleName - Variable in class ome.model.meta.Experimenter
MIDDLENAME - Static variable in class ome.model.meta.Experimenter
MILE - ome.model.enums.UnitsLength
MILLIBAR - ome.model.enums.UnitsPressure
MILLIHERTZ - ome.model.enums.UnitsFrequency
MILLIMETER - ome.model.enums.UnitsLength
MILLIPASCAL - ome.model.enums.UnitsPressure
MILLISECOND - ome.model.enums.UnitsTime
MILLITORR - ome.model.enums.UnitsPressure
MILLIVOLT - ome.model.enums.UnitsElectricPotential
MILLIWATT - ome.model.enums.UnitsPower
mimetype - Variable in class ome.model.core.OriginalFile
mimeType - Variable in class ome.model.display.Thumbnail
MIMETYPE - Static variable in class ome.model.core.OriginalFile
MIMETYPE - Static variable in class ome.model.display.Thumbnail
minimum - Variable in class ome.util.PixelData: The minimum pixel value for the pixels type of the pixel data.
MINUTE - ome.model.enums.UnitsTime
MissingPyramidException - Exception in ome.conditions
MissingPyramidException(String, long, long) - Constructor for exception ome.conditions.MissingPyramidException
MMHG - ome.model.enums.UnitsPressure
mode - Variable in class ome.model.core.LogicalChannel
MODE - Static variable in class ome.model.core.LogicalChannel
model - Variable in class ome.model.acquisition.Detector
model - Variable in class ome.model.acquisition.Dichroic
model - Variable in class ome.model.acquisition.Filter
model - Variable in class ome.model.acquisition.FilterSet
model - Variable in class ome.model.acquisition.LightSource
model - Variable in class ome.model.acquisition.Microscope
model - Variable in class ome.model.acquisition.Objective
model - Variable in class ome.model.display.RenderingDef
MODEL - Static variable in class ome.model.acquisition.Detector
MODEL - Static variable in class ome.model.acquisition.Dichroic
MODEL - Static variable in class ome.model.acquisition.Filter
MODEL - Static variable in class ome.model.acquisition.FilterSet
MODEL - Static variable in class ome.model.acquisition.LightSource
MODEL - Static variable in class ome.model.acquisition.Microscope
MODEL - Static variable in class ome.model.acquisition.Objective
MODEL - Static variable in class ome.model.display.RenderingDef
model2target - Variable in class ome.util.ModelMapper
ModelBased - Interface in ome.model: used for reverse mapping.
ModelMapper - Class in ome.util
ModelMapper() - Constructor for class ome.util.ModelMapper
mtime - Variable in class ome.model.core.OriginalFile
MTIME - Static variable in class ome.model.core.OriginalFile
Mul(Conversion[]) - Constructor for class ome.model.units.Conversion.Mul
Mul(Conversion...) - Static method in class ome.model.units.Conversion: Static helper for creating Conversion.Mul instances.
multivalued - Variable in class ome.model.meta.Namespace
MULTIVALUED - Static variable in class ome.model.meta.Namespace

N

name - Variable in class ome.model.acquisition.StageLabel
name - Variable in class ome.model.annotations.Annotation
name - Variable in class ome.model.containers.Dataset
name - Variable in class ome.model.containers.Folder
name - Variable in class ome.model.containers.Project
name - Variable in class ome.model.core.Image
name - Variable in class ome.model.core.LogicalChannel
name - Variable in class ome.model.core.OriginalFile
name - Variable in class ome.model.display.RenderingDef
name - Variable in class ome.model.meta.ExperimenterGroup
name - Variable in class ome.model.meta.Namespace
name - Variable in class ome.model.roi.Roi
name - Variable in class ome.model.screen.Plate
name - Variable in class ome.model.screen.PlateAcquisition
name - Variable in class ome.model.screen.Reagent
name - Variable in class ome.model.screen.Screen
name - Variable in class ome.parameters.QueryParameter
name - Variable in class ome.util.SqlAction.DeleteLog
NAME - Static variable in class ome.model.acquisition.StageLabel
NAME - Static variable in class ome.model.annotations.Annotation
NAME - Static variable in class ome.model.containers.Dataset
NAME - Static variable in class ome.model.containers.Folder
NAME - Static variable in class ome.model.containers.Project
NAME - Static variable in class ome.model.core.Image
NAME - Static variable in class ome.model.core.LogicalChannel
NAME - Static variable in class ome.model.core.OriginalFile
NAME - Static variable in class ome.model.display.RenderingDef
NAME - Static variable in class ome.model.meta.ExperimenterGroup
NAME - Static variable in class ome.model.meta.Namespace
NAME - Static variable in class ome.model.roi.Roi
NAME - Static variable in class ome.model.screen.Plate
NAME - Static variable in class ome.model.screen.PlateAcquisition
NAME - Static variable in class ome.model.screen.Reagent
NAME - Static variable in class ome.model.screen.Screen
NamedValue - Class in ome.model.internal: class to store a single value in an ordered list.
NamedValue() - Constructor for class ome.model.internal.NamedValue: Deprecated.
NamedValue(String, String) - Constructor for class ome.model.internal.NamedValue
Namespace - Class in ome.model.meta
Namespace() - Constructor for class ome.model.meta.Namespace
Namespace(Long) - Constructor for class ome.model.meta.Namespace
Namespace(Long, boolean) - Constructor for class ome.model.meta.Namespace: Main constructor.
Namespace(String) - Constructor for class ome.model.meta.Namespace
Namespace.Details - Class in ome.model.meta
NamespaceAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
NamespaceAnnotationLink() - Constructor for class ome.model.annotations.NamespaceAnnotationLink
NamespaceAnnotationLink(Long) - Constructor for class ome.model.annotations.NamespaceAnnotationLink
NamespaceAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.NamespaceAnnotationLink: Main constructor.
NamespaceAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.NamespaceAnnotationLink
NamespaceAnnotationLink.Details - Class in ome.model.annotations
NANOHERTZ - ome.model.enums.UnitsFrequency
NANOMETER - ome.model.enums.UnitsLength
NANOPASCAL - ome.model.enums.UnitsPressure
NANOSECOND - ome.model.enums.UnitsTime
NANOVOLT - ome.model.enums.UnitsElectricPotential
NANOWATT - ome.model.enums.UnitsPower
ndFilter - Variable in class ome.model.core.LogicalChannel
NDFILTER - Static variable in class ome.model.core.LogicalChannel
newInstance() - Method in class ome.model.acquisition.Arc
newInstance() - Method in class ome.model.acquisition.Detector.Details
newInstance() - Method in class ome.model.acquisition.Detector
newInstance() - Method in class ome.model.acquisition.DetectorSettings.Details
newInstance() - Method in class ome.model.acquisition.DetectorSettings
newInstance() - Method in class ome.model.acquisition.Dichroic.Details
newInstance() - Method in class ome.model.acquisition.Dichroic
newInstance() - Method in class ome.model.acquisition.Filament
newInstance() - Method in class ome.model.acquisition.Filter.Details
newInstance() - Method in class ome.model.acquisition.Filter
newInstance() - Method in class ome.model.acquisition.FilterSet.Details
newInstance() - Method in class ome.model.acquisition.FilterSet
newInstance() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
newInstance() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
newInstance() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
newInstance() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
newInstance() - Method in class ome.model.acquisition.GenericExcitationSource
newInstance() - Method in class ome.model.acquisition.ImagingEnvironment.Details
newInstance() - Method in class ome.model.acquisition.ImagingEnvironment
newInstance() - Method in class ome.model.acquisition.Instrument.Details
newInstance() - Method in class ome.model.acquisition.Instrument
newInstance() - Method in class ome.model.acquisition.Laser
newInstance() - Method in class ome.model.acquisition.LightEmittingDiode
newInstance() - Method in class ome.model.acquisition.LightPath.Details
newInstance() - Method in class ome.model.acquisition.LightPath
newInstance() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
newInstance() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
newInstance() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
newInstance() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
newInstance() - Method in class ome.model.acquisition.LightSettings.Details
newInstance() - Method in class ome.model.acquisition.LightSettings
newInstance() - Method in class ome.model.acquisition.LightSource.Details
newInstance() - Method in class ome.model.acquisition.Microscope.Details
newInstance() - Method in class ome.model.acquisition.Microscope
newInstance() - Method in class ome.model.acquisition.Objective.Details
newInstance() - Method in class ome.model.acquisition.Objective
newInstance() - Method in class ome.model.acquisition.ObjectiveSettings.Details
newInstance() - Method in class ome.model.acquisition.ObjectiveSettings
newInstance() - Method in class ome.model.acquisition.OTF.Details
newInstance() - Method in class ome.model.acquisition.OTF
newInstance() - Method in class ome.model.acquisition.StageLabel.Details
newInstance() - Method in class ome.model.acquisition.StageLabel
newInstance() - Method in class ome.model.acquisition.TransmittanceRange.Details
newInstance() - Method in class ome.model.acquisition.TransmittanceRange
newInstance() - Method in class ome.model.annotations.Annotation.Details
newInstance() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.AnnotationAnnotationLink
newInstance() - Method in class ome.model.annotations.BooleanAnnotation
newInstance() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.ChannelAnnotationLink
newInstance() - Method in class ome.model.annotations.CommentAnnotation
newInstance() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.DatasetAnnotationLink
newInstance() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.DetectorAnnotationLink
newInstance() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.DichroicAnnotationLink
newInstance() - Method in class ome.model.annotations.DoubleAnnotation
newInstance() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.ExperimenterAnnotationLink
newInstance() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
newInstance() - Method in class ome.model.annotations.FileAnnotation
newInstance() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.FilesetAnnotationLink
newInstance() - Method in class ome.model.annotations.FilterAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.FilterAnnotationLink
newInstance() - Method in class ome.model.annotations.FolderAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.FolderAnnotationLink
newInstance() - Method in class ome.model.annotations.ImageAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.ImageAnnotationLink
newInstance() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.InstrumentAnnotationLink
newInstance() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.LightPathAnnotationLink
newInstance() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.LightSourceAnnotationLink
newInstance() - Method in class ome.model.annotations.ListAnnotation
newInstance() - Method in class ome.model.annotations.LongAnnotation
newInstance() - Method in class ome.model.annotations.MapAnnotation
newInstance() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.NamespaceAnnotationLink
newInstance() - Method in class ome.model.annotations.NodeAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.NodeAnnotationLink
newInstance() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.ObjectiveAnnotationLink
newInstance() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.OriginalFileAnnotationLink
newInstance() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
newInstance() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
newInstance() - Method in class ome.model.annotations.PlateAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.PlateAnnotationLink
newInstance() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.ProjectAnnotationLink
newInstance() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.ReagentAnnotationLink
newInstance() - Method in class ome.model.annotations.RoiAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.RoiAnnotationLink
newInstance() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.ScreenAnnotationLink
newInstance() - Method in class ome.model.annotations.SessionAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.SessionAnnotationLink
newInstance() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.ShapeAnnotationLink
newInstance() - Method in class ome.model.annotations.TagAnnotation
newInstance() - Method in class ome.model.annotations.TermAnnotation
newInstance() - Method in class ome.model.annotations.TimestampAnnotation
newInstance() - Method in class ome.model.annotations.WellAnnotationLink.Details
newInstance() - Method in class ome.model.annotations.WellAnnotationLink
newInstance() - Method in class ome.model.annotations.XmlAnnotation
newInstance() - Method in class ome.model.containers.Dataset.Details
newInstance() - Method in class ome.model.containers.Dataset
newInstance() - Method in class ome.model.containers.DatasetImageLink.Details
newInstance() - Method in class ome.model.containers.DatasetImageLink
newInstance() - Method in class ome.model.containers.Folder.Details
newInstance() - Method in class ome.model.containers.Folder
newInstance() - Method in class ome.model.containers.FolderImageLink.Details
newInstance() - Method in class ome.model.containers.FolderImageLink
newInstance() - Method in class ome.model.containers.FolderRoiLink.Details
newInstance() - Method in class ome.model.containers.FolderRoiLink
newInstance() - Method in class ome.model.containers.Project.Details
newInstance() - Method in class ome.model.containers.Project
newInstance() - Method in class ome.model.containers.ProjectDatasetLink.Details
newInstance() - Method in class ome.model.containers.ProjectDatasetLink
newInstance() - Method in class ome.model.core.Channel.Details
newInstance() - Method in class ome.model.core.Channel
newInstance() - Method in class ome.model.core.Image.Details
newInstance() - Method in class ome.model.core.Image
newInstance() - Method in class ome.model.core.LogicalChannel.Details
newInstance() - Method in class ome.model.core.LogicalChannel
newInstance() - Method in class ome.model.core.OriginalFile.Details
newInstance() - Method in class ome.model.core.OriginalFile
newInstance() - Method in class ome.model.core.Pixels.Details
newInstance() - Method in class ome.model.core.Pixels
newInstance() - Method in class ome.model.core.PixelsOriginalFileMap.Details
newInstance() - Method in class ome.model.core.PixelsOriginalFileMap
newInstance() - Method in class ome.model.core.PlaneInfo.Details
newInstance() - Method in class ome.model.core.PlaneInfo
newInstance() - Method in class ome.model.display.ChannelBinding.Details
newInstance() - Method in class ome.model.display.ChannelBinding
newInstance() - Method in class ome.model.display.CodomainMapContext.Details
newInstance() - Method in class ome.model.display.ContrastStretchingContext
newInstance() - Method in class ome.model.display.PlaneSlicingContext
newInstance() - Method in class ome.model.display.ProjectionDef.Details
newInstance() - Method in class ome.model.display.ProjectionDef
newInstance() - Method in class ome.model.display.QuantumDef.Details
newInstance() - Method in class ome.model.display.QuantumDef
newInstance() - Method in class ome.model.display.RenderingDef.Details
newInstance() - Method in class ome.model.display.RenderingDef
newInstance() - Method in class ome.model.display.ReverseIntensityContext
newInstance() - Method in class ome.model.display.Thumbnail.Details
newInstance() - Method in class ome.model.display.Thumbnail
newInstance() - Method in class ome.model.enums.AcquisitionMode.Details
newInstance() - Method in class ome.model.enums.AcquisitionMode
newInstance() - Method in class ome.model.enums.AdminPrivilege.Details
newInstance() - Method in class ome.model.enums.AdminPrivilege
newInstance() - Method in class ome.model.enums.ArcType.Details
newInstance() - Method in class ome.model.enums.ArcType
newInstance() - Method in class ome.model.enums.Binning.Details
newInstance() - Method in class ome.model.enums.Binning
newInstance() - Method in class ome.model.enums.ChecksumAlgorithm.Details
newInstance() - Method in class ome.model.enums.ChecksumAlgorithm
newInstance() - Method in class ome.model.enums.ContrastMethod.Details
newInstance() - Method in class ome.model.enums.ContrastMethod
newInstance() - Method in class ome.model.enums.Correction.Details
newInstance() - Method in class ome.model.enums.Correction
newInstance() - Method in class ome.model.enums.DetectorType.Details
newInstance() - Method in class ome.model.enums.DetectorType
newInstance() - Method in class ome.model.enums.DimensionOrder.Details
newInstance() - Method in class ome.model.enums.DimensionOrder
newInstance() - Method in class ome.model.enums.EventType.Details
newInstance() - Method in class ome.model.enums.EventType
newInstance() - Method in class ome.model.enums.ExperimentType.Details
newInstance() - Method in class ome.model.enums.ExperimentType
newInstance() - Method in class ome.model.enums.Family.Details
newInstance() - Method in class ome.model.enums.Family
newInstance() - Method in class ome.model.enums.FilamentType.Details
newInstance() - Method in class ome.model.enums.FilamentType
newInstance() - Method in class ome.model.enums.FilterType.Details
newInstance() - Method in class ome.model.enums.FilterType
newInstance() - Method in class ome.model.enums.Format.Details
newInstance() - Method in class ome.model.enums.Format
newInstance() - Method in class ome.model.enums.Illumination.Details
newInstance() - Method in class ome.model.enums.Illumination
newInstance() - Method in class ome.model.enums.Immersion.Details
newInstance() - Method in class ome.model.enums.Immersion
newInstance() - Method in class ome.model.enums.LaserMedium.Details
newInstance() - Method in class ome.model.enums.LaserMedium
newInstance() - Method in class ome.model.enums.LaserType.Details
newInstance() - Method in class ome.model.enums.LaserType
newInstance() - Method in class ome.model.enums.Medium.Details
newInstance() - Method in class ome.model.enums.Medium
newInstance() - Method in class ome.model.enums.MicrobeamManipulationType.Details
newInstance() - Method in class ome.model.enums.MicrobeamManipulationType
newInstance() - Method in class ome.model.enums.MicroscopeType.Details
newInstance() - Method in class ome.model.enums.MicroscopeType
newInstance() - Method in class ome.model.enums.PhotometricInterpretation.Details
newInstance() - Method in class ome.model.enums.PhotometricInterpretation
newInstance() - Method in class ome.model.enums.PixelsType.Details
newInstance() - Method in class ome.model.enums.PixelsType
newInstance() - Method in class ome.model.enums.ProjectionAxis.Details
newInstance() - Method in class ome.model.enums.ProjectionAxis
newInstance() - Method in class ome.model.enums.ProjectionType.Details
newInstance() - Method in class ome.model.enums.ProjectionType
newInstance() - Method in class ome.model.enums.Pulse.Details
newInstance() - Method in class ome.model.enums.Pulse
newInstance() - Method in class ome.model.enums.RenderingModel.Details
newInstance() - Method in class ome.model.enums.RenderingModel
newInstance() - Method in class ome.model.experiment.Experiment.Details
newInstance() - Method in class ome.model.experiment.Experiment
newInstance() - Method in class ome.model.experiment.MicrobeamManipulation.Details
newInstance() - Method in class ome.model.experiment.MicrobeamManipulation
newInstance() - Method in class ome.model.fs.Fileset.Details
newInstance() - Method in class ome.model.fs.Fileset
newInstance() - Method in class ome.model.fs.FilesetEntry.Details
newInstance() - Method in class ome.model.fs.FilesetEntry
newInstance() - Method in class ome.model.fs.FilesetJobLink.Details
newInstance() - Method in class ome.model.fs.FilesetJobLink
newInstance() - Method in class ome.model.internal.Details
newInstance() - Method in class ome.model.internal.Link.Details
newInstance() - Method in class ome.model.internal.Link
newInstance() - Method in class ome.model.jobs.ImportJob: Deprecated.
newInstance() - Method in class ome.model.jobs.IndexingJob
newInstance() - Method in class ome.model.jobs.IntegrityCheckJob
newInstance() - Method in class ome.model.jobs.Job.Details
newInstance() - Method in class ome.model.jobs.JobOriginalFileLink.Details
newInstance() - Method in class ome.model.jobs.JobOriginalFileLink
newInstance() - Method in class ome.model.jobs.JobStatus.Details
newInstance() - Method in class ome.model.jobs.JobStatus
newInstance() - Method in class ome.model.jobs.MetadataImportJob
newInstance() - Method in class ome.model.jobs.ParseJob
newInstance() - Method in class ome.model.jobs.PixelDataJob
newInstance() - Method in class ome.model.jobs.ScriptJob
newInstance() - Method in class ome.model.jobs.ThumbnailGenerationJob
newInstance() - Method in class ome.model.jobs.UploadJob
newInstance() - Method in class ome.model.meta.DBPatch.Details
newInstance() - Method in class ome.model.meta.DBPatch
newInstance() - Method in class ome.model.meta.Event.Details
newInstance() - Method in class ome.model.meta.Event
newInstance() - Method in class ome.model.meta.EventLog.Details
newInstance() - Method in class ome.model.meta.EventLog
newInstance() - Method in class ome.model.meta.Experimenter.Details
newInstance() - Method in class ome.model.meta.Experimenter
newInstance() - Method in class ome.model.meta.ExperimenterGroup.Details
newInstance() - Method in class ome.model.meta.ExperimenterGroup
newInstance() - Method in class ome.model.meta.ExternalInfo.Details
newInstance() - Method in class ome.model.meta.ExternalInfo
newInstance() - Method in class ome.model.meta.GroupExperimenterMap.Details
newInstance() - Method in class ome.model.meta.GroupExperimenterMap
newInstance() - Method in class ome.model.meta.Namespace.Details
newInstance() - Method in class ome.model.meta.Namespace
newInstance() - Method in class ome.model.meta.Node.Details
newInstance() - Method in class ome.model.meta.Node
newInstance() - Method in class ome.model.meta.Session.Details
newInstance() - Method in class ome.model.meta.Session
newInstance() - Method in class ome.model.meta.Share
newInstance() - Method in class ome.model.meta.ShareMember.Details
newInstance() - Method in class ome.model.meta.ShareMember
newInstance() - Method in class ome.model.roi.AffineTransform.Details
newInstance() - Method in class ome.model.roi.AffineTransform
newInstance() - Method in class ome.model.roi.Ellipse
newInstance() - Method in class ome.model.roi.Label
newInstance() - Method in class ome.model.roi.Line
newInstance() - Method in class ome.model.roi.Mask
newInstance() - Method in class ome.model.roi.Path: Deprecated.
newInstance() - Method in class ome.model.roi.Point
newInstance() - Method in class ome.model.roi.Polygon
newInstance() - Method in class ome.model.roi.Polyline
newInstance() - Method in class ome.model.roi.Rectangle
newInstance() - Method in class ome.model.roi.Roi.Details
newInstance() - Method in class ome.model.roi.Roi
newInstance() - Method in class ome.model.roi.Shape.Details
newInstance() - Method in class ome.model.screen.Plate.Details
newInstance() - Method in class ome.model.screen.Plate
newInstance() - Method in class ome.model.screen.PlateAcquisition.Details
newInstance() - Method in class ome.model.screen.PlateAcquisition
newInstance() - Method in class ome.model.screen.Reagent.Details
newInstance() - Method in class ome.model.screen.Reagent
newInstance() - Method in class ome.model.screen.Screen.Details
newInstance() - Method in class ome.model.screen.Screen
newInstance() - Method in class ome.model.screen.ScreenPlateLink.Details
newInstance() - Method in class ome.model.screen.ScreenPlateLink
newInstance() - Method in class ome.model.screen.Well.Details
newInstance() - Method in class ome.model.screen.Well
newInstance() - Method in class ome.model.screen.WellReagentLink.Details
newInstance() - Method in class ome.model.screen.WellReagentLink
newInstance() - Method in class ome.model.screen.WellSample.Details
newInstance() - Method in class ome.model.screen.WellSample
newInstance() - Method in class ome.model.stats.StatsInfo.Details
newInstance() - Method in class ome.model.stats.StatsInfo
next() - Method in class ome.util.EmptyIterator
nextPixelsDataLogForRepo(String, long, int) - Method in class ome.util.SqlAction.Impl
nextPixelsDataLogForRepo(String, long, int) - Method in interface ome.util.SqlAction: Returns arrays of longs for the following SQL return values: experimenter, eventlog, entityid as pixels, rownumber The oldest N eventlogs with action = "PIXELDATA" and entitytype = "ome.model.core.Pixels" is found per user and returned.
nextSessionId() - Method in class ome.util.actions.PostgresSqlAction
nextSessionId() - Method in interface ome.util.SqlAction
nextValue(String, int) - Method in class ome.util.actions.PostgresSqlAction
nextValue(String, int) - Method in interface ome.util.SqlAction: The implementation of this method guarantees that even if the current transaction fails that the value found will not be used by another transaction.
noCache() - Method in class ome.parameters.Parameters: Set queries to not be cacheable.
node - Variable in class ome.model.meta.Session
Node - Class in ome.model.meta
Node() - Constructor for class ome.model.meta.Node
Node(Long) - Constructor for class ome.model.meta.Node
Node(Long, boolean) - Constructor for class ome.model.meta.Node: Main constructor.
Node(String, String, Timestamp) - Constructor for class ome.model.meta.Node
NODE - Static variable in class ome.model.meta.Session
Node.Details - Class in ome.model.meta
NodeAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
NodeAnnotationLink() - Constructor for class ome.model.annotations.NodeAnnotationLink
NodeAnnotationLink(Long) - Constructor for class ome.model.annotations.NodeAnnotationLink
NodeAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.NodeAnnotationLink: Main constructor.
NodeAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.NodeAnnotationLink
NodeAnnotationLink.Details - Class in ome.model.annotations
nodeId(String) - Method in class ome.util.actions.PostgresSqlAction
nodeId(String) - Method in interface ome.util.SqlAction
noiseReduction - Variable in class ome.model.display.ChannelBinding
NOISEREDUCTION - Static variable in class ome.model.display.ChannelBinding
noLeaves() - Method in class ome.parameters.Parameters
nominalMagnification - Variable in class ome.model.acquisition.Objective
NOMINALMAGNIFICATION - Static variable in class ome.model.acquisition.Objective
noOrphan() - Method in class ome.parameters.Parameters
now() - Method in class ome.util.actions.PostgresSqlAction
now() - Method in interface ome.util.SqlAction
ns - Variable in class ome.model.annotations.Annotation
NS - Static variable in class ome.model.annotations.Annotation
nullSafeDouble(Double) - Method in class ome.util.ModelMapper
nullSafeFloat(Float) - Method in class ome.util.ModelMapper
nullSafeGet(ResultSet, String[], Object) - Method in class ome.model.units.GenericEnumType
nullSafeInt(Integer) - Method in class ome.util.ModelMapper
nullSafeLong(Long) - Method in class ome.util.ModelMapper
nullSafeSet(PreparedStatement, Object, int) - Method in class ome.model.units.GenericEnumType
NumericAnnotation - Class in ome.model.annotations
NumericAnnotation() - Constructor for class ome.model.annotations.NumericAnnotation
NumericAnnotation(Long) - Constructor for class ome.model.annotations.NumericAnnotation
NumericAnnotation(Long, boolean) - Constructor for class ome.model.annotations.NumericAnnotation: Main constructor.

O

objective - Variable in class ome.model.acquisition.Instrument
objective - Variable in class ome.model.acquisition.ObjectiveSettings
objective - Variable in class ome.model.acquisition.OTF
Objective - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Objective() - Constructor for class ome.model.acquisition.Objective
Objective(Long) - Constructor for class ome.model.acquisition.Objective
Objective(Long, boolean) - Constructor for class ome.model.acquisition.Objective: Main constructor.
Objective(Immersion, Correction, Instrument) - Constructor for class ome.model.acquisition.Objective
OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
OBJECTIVE - Static variable in class ome.model.acquisition.ObjectiveSettings
OBJECTIVE - Static variable in class ome.model.acquisition.OTF
Objective.Details - Class in ome.model.acquisition
ObjectiveAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ObjectiveAnnotationLink() - Constructor for class ome.model.annotations.ObjectiveAnnotationLink
ObjectiveAnnotationLink(Long) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink
ObjectiveAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink: Main constructor.
ObjectiveAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink
ObjectiveAnnotationLink.Details - Class in ome.model.annotations
objectiveSettings - Variable in class ome.model.core.Image
ObjectiveSettings - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ObjectiveSettings() - Constructor for class ome.model.acquisition.ObjectiveSettings
ObjectiveSettings(Long) - Constructor for class ome.model.acquisition.ObjectiveSettings
ObjectiveSettings(Long, boolean) - Constructor for class ome.model.acquisition.ObjectiveSettings: Main constructor.
ObjectiveSettings(Objective) - Constructor for class ome.model.acquisition.ObjectiveSettings
OBJECTIVESETTINGS - Static variable in class ome.model.core.Image
ObjectiveSettings.Details - Class in ome.model.acquisition
objectToSQLString(String, Dialect) - Method in class ome.util.PrivilegedStringType
offset - Variable in class ome.parameters.Filter
offsetValue - Variable in class ome.model.acquisition.Detector
offsetValue - Variable in class ome.model.acquisition.DetectorSettings
OFFSETVALUE - Static variable in class ome.model.acquisition.Detector
OFFSETVALUE - Static variable in class ome.model.acquisition.DetectorSettings
ome.conditions - package ome.conditions
ome.conditions.acl - package ome.conditions.acl
ome.model - package ome.model
ome.model.acquisition - package ome.model.acquisition
ome.model.annotations - package ome.model.annotations
ome.model.containers - package ome.model.containers
ome.model.core - package ome.model.core
ome.model.display - package ome.model.display
ome.model.enums - package ome.model.enums
ome.model.experiment - package ome.model.experiment
ome.model.fs - package ome.model.fs
ome.model.internal - package ome.model.internal
ome.model.jobs - package ome.model.jobs
ome.model.meta - package ome.model.meta
ome.model.roi - package ome.model.roi
ome.model.screen - package ome.model.screen
ome.model.stats - package ome.model.stats
ome.model.units - package ome.model.units
ome.parameters - package ome.parameters
ome.services.fulltext - package ome.services.fulltext
ome.util - package ome.util
ome.util.actions - package ome.util.actions
omeName - Variable in class ome.model.meta.Experimenter
OMENAME - Static variable in class ome.model.meta.Experimenter
opticalAxisAveraged - Variable in class ome.model.acquisition.OTF
OPTICALAXISAVERAGED - Static variable in class ome.model.acquisition.OTF
OptimisticLockException - Exception in ome.conditions: Signifies that another user has updated or deleted a given object, more specifically a query of the form : "<action> where id = ? and version = ?" applied to no rows.
OptimisticLockException(String) - Constructor for exception ome.conditions.OptimisticLockException
Options - Class in ome.parameters: Simple options container.
Options() - Constructor for class ome.parameters.Options
originalFile - Variable in class ome.model.fs.FilesetEntry
OriginalFile - Class in ome.model.core: These filter definitions are used by the security system to eliminate non-readable objects from queries.
OriginalFile() - Constructor for class ome.model.core.OriginalFile
OriginalFile(Long) - Constructor for class ome.model.core.OriginalFile
OriginalFile(Long, boolean) - Constructor for class ome.model.core.OriginalFile: Main constructor.
OriginalFile(String, String) - Constructor for class ome.model.core.OriginalFile
ORIGINALFILE - Static variable in class ome.model.fs.FilesetEntry
OriginalFile.Details - Class in ome.model.core
OriginalFileAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
OriginalFileAnnotationLink() - Constructor for class ome.model.annotations.OriginalFileAnnotationLink
OriginalFileAnnotationLink(Long) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink
OriginalFileAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink: Main constructor.
OriginalFileAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink
OriginalFileAnnotationLink.Details - Class in ome.model.annotations
originalFileLinks - Variable in class ome.model.jobs.Job
ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
ORIGINALFILELINKSCOUNTPEROWNER - Static variable in class ome.model.jobs.Job
orphan - Variable in class ome.parameters.Options
orphan() - Method in class ome.parameters.Parameters
otf - Variable in class ome.model.acquisition.Instrument
otf - Variable in class ome.model.core.LogicalChannel
OTF - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
OTF - Static variable in class ome.model.acquisition.Instrument
OTF - Static variable in class ome.model.core.LogicalChannel
OTF() - Constructor for class ome.model.acquisition.OTF
OTF(Integer, Integer, Boolean, PixelsType, String, Objective, Instrument) - Constructor for class ome.model.acquisition.OTF
OTF(Long) - Constructor for class ome.model.acquisition.OTF
OTF(Long, boolean) - Constructor for class ome.model.acquisition.OTF: Main constructor.
OTF.Details - Class in ome.model.acquisition
OverUsageException - Exception in ome.conditions: More specific ApiUsageException, in that the current use of the OMERO API could overwhelm the server and has been blocked.
OverUsageException(String) - Constructor for exception ome.conditions.OverUsageException
owner - Variable in class ome.model.meta.GroupExperimenterMap
owner - Variable in class ome.model.meta.Session
owner() - Method in class ome.parameters.Filter
owner() - Method in class ome.parameters.Parameters
owner(long) - Method in class ome.parameters.Filter
OWNER - Static variable in class ome.model.internal.Details
OWNER - Static variable in class ome.model.meta.GroupExperimenterMap
OWNER - Static variable in class ome.model.meta.Session
OWNER_FILTER - Static variable in class ome.model.acquisition.Arc
OWNER_FILTER - Static variable in class ome.model.acquisition.Detector
OWNER_FILTER - Static variable in class ome.model.acquisition.DetectorSettings
OWNER_FILTER - Static variable in class ome.model.acquisition.Dichroic
OWNER_FILTER - Static variable in class ome.model.acquisition.Filament
OWNER_FILTER - Static variable in class ome.model.acquisition.Filter
OWNER_FILTER - Static variable in class ome.model.acquisition.FilterSet
OWNER_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
OWNER_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
OWNER_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource
OWNER_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment
OWNER_FILTER - Static variable in class ome.model.acquisition.Instrument
OWNER_FILTER - Static variable in class ome.model.acquisition.Laser
OWNER_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode
OWNER_FILTER - Static variable in class ome.model.acquisition.LightPath
OWNER_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
OWNER_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
OWNER_FILTER - Static variable in class ome.model.acquisition.LightSettings
OWNER_FILTER - Static variable in class ome.model.acquisition.LightSource
OWNER_FILTER - Static variable in class ome.model.acquisition.Microscope
OWNER_FILTER - Static variable in class ome.model.acquisition.Objective
OWNER_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings
OWNER_FILTER - Static variable in class ome.model.acquisition.OTF
OWNER_FILTER - Static variable in class ome.model.acquisition.StageLabel
OWNER_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange
OWNER_FILTER - Static variable in class ome.model.annotations.Annotation
OWNER_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.BasicAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.CommentAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.FileAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.ListAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.LongAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.MapAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.NumericAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.TagAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.TermAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.TextAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.TypeAnnotation
OWNER_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink
OWNER_FILTER - Static variable in class ome.model.annotations.XmlAnnotation
OWNER_FILTER - Static variable in class ome.model.containers.Dataset
OWNER_FILTER - Static variable in class ome.model.containers.DatasetImageLink
OWNER_FILTER - Static variable in class ome.model.containers.Folder
OWNER_FILTER - Static variable in class ome.model.containers.FolderImageLink
OWNER_FILTER - Static variable in class ome.model.containers.FolderRoiLink
OWNER_FILTER - Static variable in class ome.model.containers.Project
OWNER_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink
OWNER_FILTER - Static variable in class ome.model.core.Channel
OWNER_FILTER - Static variable in class ome.model.core.Image
OWNER_FILTER - Static variable in class ome.model.core.LogicalChannel
OWNER_FILTER - Static variable in class ome.model.core.OriginalFile
OWNER_FILTER - Static variable in class ome.model.core.Pixels
OWNER_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap
OWNER_FILTER - Static variable in class ome.model.core.PlaneInfo
OWNER_FILTER - Static variable in class ome.model.display.ChannelBinding
OWNER_FILTER - Static variable in class ome.model.display.CodomainMapContext
OWNER_FILTER - Static variable in class ome.model.display.ContrastStretchingContext
OWNER_FILTER - Static variable in class ome.model.display.PlaneSlicingContext
OWNER_FILTER - Static variable in class ome.model.display.ProjectionDef
OWNER_FILTER - Static variable in class ome.model.display.QuantumDef
OWNER_FILTER - Static variable in class ome.model.display.RenderingDef
OWNER_FILTER - Static variable in class ome.model.display.ReverseIntensityContext
OWNER_FILTER - Static variable in class ome.model.display.Thumbnail
OWNER_FILTER - Static variable in class ome.model.experiment.Experiment
OWNER_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation
OWNER_FILTER - Static variable in class ome.model.fs.Fileset
OWNER_FILTER - Static variable in class ome.model.fs.FilesetEntry
OWNER_FILTER - Static variable in class ome.model.fs.FilesetJobLink
OWNER_FILTER - Static variable in class ome.model.internal.Link
OWNER_FILTER - Static variable in class ome.model.jobs.ImportJob: Deprecated.
OWNER_FILTER - Static variable in class ome.model.jobs.IndexingJob
OWNER_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob
OWNER_FILTER - Static variable in class ome.model.jobs.Job
OWNER_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink
OWNER_FILTER - Static variable in class ome.model.jobs.MetadataImportJob
OWNER_FILTER - Static variable in class ome.model.jobs.ParseJob
OWNER_FILTER - Static variable in class ome.model.jobs.PixelDataJob
OWNER_FILTER - Static variable in class ome.model.jobs.ScriptJob
OWNER_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob
OWNER_FILTER - Static variable in class ome.model.jobs.UploadJob
OWNER_FILTER - Static variable in class ome.model.meta.ExternalInfo
OWNER_FILTER - Static variable in class ome.model.roi.AffineTransform
OWNER_FILTER - Static variable in class ome.model.roi.Ellipse
OWNER_FILTER - Static variable in class ome.model.roi.Label
OWNER_FILTER - Static variable in class ome.model.roi.Line
OWNER_FILTER - Static variable in class ome.model.roi.Mask
OWNER_FILTER - Static variable in class ome.model.roi.Path: Deprecated.
OWNER_FILTER - Static variable in class ome.model.roi.Point
OWNER_FILTER - Static variable in class ome.model.roi.Polygon
OWNER_FILTER - Static variable in class ome.model.roi.Polyline
OWNER_FILTER - Static variable in class ome.model.roi.Rectangle
OWNER_FILTER - Static variable in class ome.model.roi.Roi
OWNER_FILTER - Static variable in class ome.model.roi.Shape
OWNER_FILTER - Static variable in class ome.model.screen.Plate
OWNER_FILTER - Static variable in class ome.model.screen.PlateAcquisition
OWNER_FILTER - Static variable in class ome.model.screen.Reagent
OWNER_FILTER - Static variable in class ome.model.screen.Screen
OWNER_FILTER - Static variable in class ome.model.screen.ScreenPlateLink
OWNER_FILTER - Static variable in class ome.model.screen.Well
OWNER_FILTER - Static variable in class ome.model.screen.WellReagentLink
OWNER_FILTER - Static variable in class ome.model.screen.WellSample
OWNER_FILTER - Static variable in class ome.model.stats.StatsInfo
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
OWNER_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel
OWNER_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels
OWNER_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder
OWNER_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project
OWNER_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image
OWNER_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument
OWNER_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument
OWNER_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
OWNER_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
OWNER_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
OWNER_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
OWNER_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
OWNER_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
OWNER_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
OWNER_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument
OWNER_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument
OWNER_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image
OWNER_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi
OWNER_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset
OWNER_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder
OWNER_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset
OWNER_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset
OWNER_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
OWNER_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
OWNER_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
OWNER_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
OWNER_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
OWNER_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument
OWNER_FILTER_PIXELS - Static variable in class ome.model.core.Image
OWNER_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
OWNER_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
OWNER_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels
OWNER_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
OWNER_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen
OWNER_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef
OWNER_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset
OWNER_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well
OWNER_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen
OWNER_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder
OWNER_FILTER_ROIS - Static variable in class ome.model.core.Image
OWNER_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate
OWNER_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels
OWNER_FILTER_SHAPES - Static variable in class ome.model.roi.Roi
OWNER_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
OWNER_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels
OWNER_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset
OWNER_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef
OWNER_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent
OWNER_FILTER_WELLS - Static variable in class ome.model.screen.Plate
OWNER_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
OWNER_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image
OWNER_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well
OWNER_ID - Static variable in class ome.parameters.Parameters: named parameter "ownerId".
ownerId - Variable in class ome.util.SqlAction.DeleteLog

P

page(Integer, Integer) - Method in class ome.parameters.Filter
page(Integer, Integer) - Method in class ome.parameters.Parameters
paginate(Integer, Integer) - Method in class ome.parameters.Parameters
Parameters - Class in ome.parameters: container object for QueryParameter and Filter instances.
Parameters() - Constructor for class ome.parameters.Parameters: default constructor.
Parameters(Filter) - Constructor for class ome.parameters.Parameters: Filter constructor.
Parameters(Parameters) - Constructor for class ome.parameters.Parameters: copy constructor.
Parameters(QueryParameter[]) - Constructor for class ome.parameters.Parameters: copy constructor.
params - Variable in class ome.model.jobs.ParseJob
PARAMS - Static variable in class ome.model.jobs.ParseJob
parent - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
parent - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
parent - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
parent - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
parent - Variable in class ome.model.annotations.AnnotationAnnotationLink
parent - Variable in class ome.model.annotations.ChannelAnnotationLink
parent - Variable in class ome.model.annotations.DatasetAnnotationLink
parent - Variable in class ome.model.annotations.DetectorAnnotationLink
parent - Variable in class ome.model.annotations.DichroicAnnotationLink
parent - Variable in class ome.model.annotations.ExperimenterAnnotationLink
parent - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
parent - Variable in class ome.model.annotations.FilesetAnnotationLink
parent - Variable in class ome.model.annotations.FilterAnnotationLink
parent - Variable in class ome.model.annotations.FolderAnnotationLink
parent - Variable in class ome.model.annotations.ImageAnnotationLink
parent - Variable in class ome.model.annotations.InstrumentAnnotationLink
parent - Variable in class ome.model.annotations.LightPathAnnotationLink
parent - Variable in class ome.model.annotations.LightSourceAnnotationLink
parent - Variable in class ome.model.annotations.NamespaceAnnotationLink
parent - Variable in class ome.model.annotations.NodeAnnotationLink
parent - Variable in class ome.model.annotations.ObjectiveAnnotationLink
parent - Variable in class ome.model.annotations.OriginalFileAnnotationLink
parent - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
parent - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
parent - Variable in class ome.model.annotations.PlateAnnotationLink
parent - Variable in class ome.model.annotations.ProjectAnnotationLink
parent - Variable in class ome.model.annotations.ReagentAnnotationLink
parent - Variable in class ome.model.annotations.RoiAnnotationLink
parent - Variable in class ome.model.annotations.ScreenAnnotationLink
parent - Variable in class ome.model.annotations.SessionAnnotationLink
parent - Variable in class ome.model.annotations.ShapeAnnotationLink
parent - Variable in class ome.model.annotations.WellAnnotationLink
parent - Variable in class ome.model.containers.DatasetImageLink
parent - Variable in class ome.model.containers.FolderImageLink
parent - Variable in class ome.model.containers.FolderRoiLink
parent - Variable in class ome.model.containers.ProjectDatasetLink
parent - Variable in class ome.model.core.PixelsOriginalFileMap
parent - Variable in class ome.model.fs.FilesetJobLink
parent - Variable in class ome.model.jobs.JobOriginalFileLink
parent - Variable in class ome.model.meta.GroupExperimenterMap
parent - Variable in class ome.model.meta.ShareMember
parent - Variable in class ome.model.screen.ScreenPlateLink
parent - Variable in class ome.model.screen.WellReagentLink
parent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
parent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
parent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
parent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
parent() - Method in class ome.model.annotations.AnnotationAnnotationLink
parent() - Method in class ome.model.annotations.ChannelAnnotationLink
parent() - Method in class ome.model.annotations.DatasetAnnotationLink
parent() - Method in class ome.model.annotations.DetectorAnnotationLink
parent() - Method in class ome.model.annotations.DichroicAnnotationLink
parent() - Method in class ome.model.annotations.ExperimenterAnnotationLink
parent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
parent() - Method in class ome.model.annotations.FilesetAnnotationLink
parent() - Method in class ome.model.annotations.FilterAnnotationLink
parent() - Method in class ome.model.annotations.FolderAnnotationLink
parent() - Method in class ome.model.annotations.ImageAnnotationLink
parent() - Method in class ome.model.annotations.InstrumentAnnotationLink
parent() - Method in class ome.model.annotations.LightPathAnnotationLink
parent() - Method in class ome.model.annotations.LightSourceAnnotationLink
parent() - Method in class ome.model.annotations.NamespaceAnnotationLink
parent() - Method in class ome.model.annotations.NodeAnnotationLink
parent() - Method in class ome.model.annotations.ObjectiveAnnotationLink
parent() - Method in class ome.model.annotations.OriginalFileAnnotationLink
parent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
parent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
parent() - Method in class ome.model.annotations.PlateAnnotationLink
parent() - Method in class ome.model.annotations.ProjectAnnotationLink
parent() - Method in class ome.model.annotations.ReagentAnnotationLink
parent() - Method in class ome.model.annotations.RoiAnnotationLink
parent() - Method in class ome.model.annotations.ScreenAnnotationLink
parent() - Method in class ome.model.annotations.SessionAnnotationLink
parent() - Method in class ome.model.annotations.ShapeAnnotationLink
parent() - Method in class ome.model.annotations.WellAnnotationLink
parent() - Method in class ome.model.containers.DatasetImageLink
parent() - Method in class ome.model.containers.FolderImageLink
parent() - Method in class ome.model.containers.FolderRoiLink
parent() - Method in class ome.model.containers.ProjectDatasetLink
parent() - Method in class ome.model.core.PixelsOriginalFileMap
parent() - Method in class ome.model.fs.FilesetJobLink
parent() - Method in class ome.model.jobs.JobOriginalFileLink
parent() - Method in class ome.model.meta.GroupExperimenterMap
parent() - Method in class ome.model.meta.ShareMember
parent() - Method in class ome.model.screen.ScreenPlateLink
parent() - Method in class ome.model.screen.WellReagentLink
PARENT - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
PARENT - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
PARENT - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
PARENT - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
PARENT - Static variable in class ome.model.annotations.AnnotationAnnotationLink
PARENT - Static variable in class ome.model.annotations.ChannelAnnotationLink
PARENT - Static variable in class ome.model.annotations.DatasetAnnotationLink
PARENT - Static variable in class ome.model.annotations.DetectorAnnotationLink
PARENT - Static variable in class ome.model.annotations.DichroicAnnotationLink
PARENT - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
PARENT - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
PARENT - Static variable in class ome.model.annotations.FilesetAnnotationLink
PARENT - Static variable in class ome.model.annotations.FilterAnnotationLink
PARENT - Static variable in class ome.model.annotations.FolderAnnotationLink
PARENT - Static variable in class ome.model.annotations.ImageAnnotationLink
PARENT - Static variable in class ome.model.annotations.InstrumentAnnotationLink
PARENT - Static variable in class ome.model.annotations.LightPathAnnotationLink
PARENT - Static variable in class ome.model.annotations.LightSourceAnnotationLink
PARENT - Static variable in class ome.model.annotations.NamespaceAnnotationLink
PARENT - Static variable in class ome.model.annotations.NodeAnnotationLink
PARENT - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
PARENT - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
PARENT - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
PARENT - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
PARENT - Static variable in class ome.model.annotations.PlateAnnotationLink
PARENT - Static variable in class ome.model.annotations.ProjectAnnotationLink
PARENT - Static variable in class ome.model.annotations.ReagentAnnotationLink
PARENT - Static variable in class ome.model.annotations.RoiAnnotationLink
PARENT - Static variable in class ome.model.annotations.ScreenAnnotationLink
PARENT - Static variable in class ome.model.annotations.SessionAnnotationLink
PARENT - Static variable in class ome.model.annotations.ShapeAnnotationLink
PARENT - Static variable in class ome.model.annotations.WellAnnotationLink
PARENT - Static variable in class ome.model.containers.DatasetImageLink
PARENT - Static variable in class ome.model.containers.FolderImageLink
PARENT - Static variable in class ome.model.containers.FolderRoiLink
PARENT - Static variable in class ome.model.containers.ProjectDatasetLink
PARENT - Static variable in class ome.model.core.PixelsOriginalFileMap
PARENT - Static variable in class ome.model.fs.FilesetJobLink
PARENT - Static variable in class ome.model.jobs.JobOriginalFileLink
PARENT - Static variable in class ome.model.meta.GroupExperimenterMap
PARENT - Static variable in class ome.model.meta.ShareMember
PARENT - Static variable in class ome.model.screen.ScreenPlateLink
PARENT - Static variable in class ome.model.screen.WellReagentLink
parentFolder - Variable in class ome.model.containers.Folder
PARENTFOLDER - Static variable in class ome.model.containers.Folder
PARSEC - ome.model.enums.UnitsLength
parseIndexes() - Method in class ome.util.LSID: Attempts to parse and return the indexes for the LSID parsed from the LSID's string representation.
parseJavaClass() - Method in class ome.util.LSID: Attempts to parse and return the concrete Java class for the LSID from the LSID's string representation.
ParseJob - Class in ome.model.jobs
ParseJob() - Constructor for class ome.model.jobs.ParseJob
ParseJob(Long) - Constructor for class ome.model.jobs.ParseJob
ParseJob(Long, boolean) - Constructor for class ome.model.jobs.ParseJob: Main constructor.
parseString(String) - Static method in class ome.model.internal.Permissions
partial - Variable in class ome.model.core.Image
PARTIAL - Static variable in class ome.model.core.Image
PASCAL - ome.model.enums.UnitsPressure
path - Variable in class ome.model.acquisition.OTF
path - Variable in class ome.model.core.OriginalFile
path - Variable in class ome.util.SqlAction.DeleteLog
Path - Class in ome.model.roi: Deprecated.
Path() - Constructor for class ome.model.roi.Path: Deprecated.
Path(Long) - Constructor for class ome.model.roi.Path: Deprecated.
Path(Long, boolean) - Constructor for class ome.model.roi.Path: Deprecated.

Main constructor.
PATH - Static variable in class ome.model.acquisition.OTF
PATH - Static variable in class ome.model.core.OriginalFile
Period - Class in ome.parameters: parameter which defines the ordering as well as the start and offset for a List-valued result set.
Period(int, int) - Constructor for class ome.parameters.Period
PermDetails - Class in ome.util: wrapper class which can be used in HQL queries to properly load the full context for a permissions object.
PermDetails(IObject) - Constructor for class ome.util.PermDetails
PermissionMismatchGroupSecurityViolation - Exception in ome.conditions: Extension of GroupSecurityViolation signalling that an object has a permission which does not match the group permissions.
PermissionMismatchGroupSecurityViolation(String) - Constructor for exception ome.conditions.PermissionMismatchGroupSecurityViolation
Permissions - Class in ome.model.internal: class responsible for storing all Right/Role-based information for entities as well as various flags for the containing Details instance.
Permissions() - Constructor for class ome.model.internal.Permissions: simple constructor.
Permissions(Permissions) - Constructor for class ome.model.internal.Permissions: copy constructor.
PERMISSIONS - Static variable in class ome.model.internal.Details
Permissions.Flag - Enum in ome.model.internal: Currently unused.
Permissions.Right - Enum in ome.model.internal: enumeration of granted rights.
Permissions.Role - Enum in ome.model.internal: enumeration of currently active roles.
PERMS_FILTER - Static variable in class ome.model.acquisition.Arc
PERMS_FILTER - Static variable in class ome.model.acquisition.Detector
PERMS_FILTER - Static variable in class ome.model.acquisition.DetectorSettings
PERMS_FILTER - Static variable in class ome.model.acquisition.Dichroic
PERMS_FILTER - Static variable in class ome.model.acquisition.Filament
PERMS_FILTER - Static variable in class ome.model.acquisition.Filter
PERMS_FILTER - Static variable in class ome.model.acquisition.FilterSet
PERMS_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
PERMS_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
PERMS_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource
PERMS_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment
PERMS_FILTER - Static variable in class ome.model.acquisition.Instrument
PERMS_FILTER - Static variable in class ome.model.acquisition.Laser
PERMS_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode
PERMS_FILTER - Static variable in class ome.model.acquisition.LightPath
PERMS_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
PERMS_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
PERMS_FILTER - Static variable in class ome.model.acquisition.LightSettings
PERMS_FILTER - Static variable in class ome.model.acquisition.LightSource
PERMS_FILTER - Static variable in class ome.model.acquisition.Microscope
PERMS_FILTER - Static variable in class ome.model.acquisition.Objective
PERMS_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings
PERMS_FILTER - Static variable in class ome.model.acquisition.OTF
PERMS_FILTER - Static variable in class ome.model.acquisition.StageLabel
PERMS_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange
PERMS_FILTER - Static variable in class ome.model.annotations.Annotation
PERMS_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.BasicAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.CommentAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.FileAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.ListAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.LongAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.MapAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.NumericAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.TagAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.TermAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.TextAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.TypeAnnotation
PERMS_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink
PERMS_FILTER - Static variable in class ome.model.annotations.XmlAnnotation
PERMS_FILTER - Static variable in class ome.model.containers.Dataset
PERMS_FILTER - Static variable in class ome.model.containers.DatasetImageLink
PERMS_FILTER - Static variable in class ome.model.containers.Folder
PERMS_FILTER - Static variable in class ome.model.containers.FolderImageLink
PERMS_FILTER - Static variable in class ome.model.containers.FolderRoiLink
PERMS_FILTER - Static variable in class ome.model.containers.Project
PERMS_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink
PERMS_FILTER - Static variable in class ome.model.core.Channel
PERMS_FILTER - Static variable in class ome.model.core.Image
PERMS_FILTER - Static variable in class ome.model.core.LogicalChannel
PERMS_FILTER - Static variable in class ome.model.core.OriginalFile
PERMS_FILTER - Static variable in class ome.model.core.Pixels
PERMS_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap
PERMS_FILTER - Static variable in class ome.model.core.PlaneInfo
PERMS_FILTER - Static variable in class ome.model.display.ChannelBinding
PERMS_FILTER - Static variable in class ome.model.display.CodomainMapContext
PERMS_FILTER - Static variable in class ome.model.display.ContrastStretchingContext
PERMS_FILTER - Static variable in class ome.model.display.PlaneSlicingContext
PERMS_FILTER - Static variable in class ome.model.display.ProjectionDef
PERMS_FILTER - Static variable in class ome.model.display.QuantumDef
PERMS_FILTER - Static variable in class ome.model.display.RenderingDef
PERMS_FILTER - Static variable in class ome.model.display.ReverseIntensityContext
PERMS_FILTER - Static variable in class ome.model.display.Thumbnail
PERMS_FILTER - Static variable in class ome.model.experiment.Experiment
PERMS_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation
PERMS_FILTER - Static variable in class ome.model.fs.Fileset
PERMS_FILTER - Static variable in class ome.model.fs.FilesetEntry
PERMS_FILTER - Static variable in class ome.model.fs.FilesetJobLink
PERMS_FILTER - Static variable in class ome.model.internal.Link
PERMS_FILTER - Static variable in class ome.model.jobs.ImportJob: Deprecated.
PERMS_FILTER - Static variable in class ome.model.jobs.IndexingJob
PERMS_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob
PERMS_FILTER - Static variable in class ome.model.jobs.Job
PERMS_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink
PERMS_FILTER - Static variable in class ome.model.jobs.MetadataImportJob
PERMS_FILTER - Static variable in class ome.model.jobs.ParseJob
PERMS_FILTER - Static variable in class ome.model.jobs.PixelDataJob
PERMS_FILTER - Static variable in class ome.model.jobs.ScriptJob
PERMS_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob
PERMS_FILTER - Static variable in class ome.model.jobs.UploadJob
PERMS_FILTER - Static variable in class ome.model.meta.ExternalInfo
PERMS_FILTER - Static variable in class ome.model.roi.AffineTransform
PERMS_FILTER - Static variable in class ome.model.roi.Ellipse
PERMS_FILTER - Static variable in class ome.model.roi.Label
PERMS_FILTER - Static variable in class ome.model.roi.Line
PERMS_FILTER - Static variable in class ome.model.roi.Mask
PERMS_FILTER - Static variable in class ome.model.roi.Path: Deprecated.
PERMS_FILTER - Static variable in class ome.model.roi.Point
PERMS_FILTER - Static variable in class ome.model.roi.Polygon
PERMS_FILTER - Static variable in class ome.model.roi.Polyline
PERMS_FILTER - Static variable in class ome.model.roi.Rectangle
PERMS_FILTER - Static variable in class ome.model.roi.Roi
PERMS_FILTER - Static variable in class ome.model.roi.Shape
PERMS_FILTER - Static variable in class ome.model.screen.Plate
PERMS_FILTER - Static variable in class ome.model.screen.PlateAcquisition
PERMS_FILTER - Static variable in class ome.model.screen.Reagent
PERMS_FILTER - Static variable in class ome.model.screen.Screen
PERMS_FILTER - Static variable in class ome.model.screen.ScreenPlateLink
PERMS_FILTER - Static variable in class ome.model.screen.Well
PERMS_FILTER - Static variable in class ome.model.screen.WellReagentLink
PERMS_FILTER - Static variable in class ome.model.screen.WellSample
PERMS_FILTER - Static variable in class ome.model.stats.StatsInfo
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
PERMS_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel
PERMS_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels
PERMS_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder
PERMS_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project
PERMS_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image
PERMS_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument
PERMS_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument
PERMS_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
PERMS_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
PERMS_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
PERMS_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
PERMS_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
PERMS_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
PERMS_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
PERMS_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument
PERMS_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument
PERMS_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image
PERMS_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi
PERMS_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset
PERMS_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder
PERMS_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset
PERMS_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset
PERMS_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
PERMS_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
PERMS_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
PERMS_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
PERMS_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
PERMS_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument
PERMS_FILTER_PIXELS - Static variable in class ome.model.core.Image
PERMS_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
PERMS_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
PERMS_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels
PERMS_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
PERMS_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen
PERMS_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef
PERMS_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset
PERMS_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well
PERMS_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen
PERMS_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder
PERMS_FILTER_ROIS - Static variable in class ome.model.core.Image
PERMS_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate
PERMS_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels
PERMS_FILTER_SHAPES - Static variable in class ome.model.roi.Roi
PERMS_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
PERMS_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels
PERMS_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset
PERMS_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef
PERMS_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent
PERMS_FILTER_WELLS - Static variable in class ome.model.screen.Plate
PERMS_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
PERMS_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image
PERMS_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well
PETAHERTZ - ome.model.enums.UnitsFrequency
PETAMETER - ome.model.enums.UnitsLength
PETAPASCAL - ome.model.enums.UnitsPressure
PETASECOND - ome.model.enums.UnitsTime
PETAVOLT - ome.model.enums.UnitsElectricPotential
PETAWATT - ome.model.enums.UnitsPower
photometricInterpretation - Variable in class ome.model.core.LogicalChannel
PhotometricInterpretation - Class in ome.model.enums
PhotometricInterpretation() - Constructor for class ome.model.enums.PhotometricInterpretation
PhotometricInterpretation(Long) - Constructor for class ome.model.enums.PhotometricInterpretation
PhotometricInterpretation(Long, boolean) - Constructor for class ome.model.enums.PhotometricInterpretation: Main constructor.
PhotometricInterpretation(String) - Constructor for class ome.model.enums.PhotometricInterpretation
PHOTOMETRICINTERPRETATION - Static variable in class ome.model.core.LogicalChannel
PhotometricInterpretation.Details - Class in ome.model.enums
physicalSizeX - Variable in class ome.model.core.Pixels
PHYSICALSIZEX - Static variable in class ome.model.core.Pixels
physicalSizeY - Variable in class ome.model.core.Pixels
PHYSICALSIZEY - Static variable in class ome.model.core.Pixels
physicalSizeZ - Variable in class ome.model.core.Pixels
PHYSICALSIZEZ - Static variable in class ome.model.core.Pixels
PICOHERTZ - ome.model.enums.UnitsFrequency
PICOMETER - ome.model.enums.UnitsLength
PICOPASCAL - ome.model.enums.UnitsPressure
PICOSECOND - ome.model.enums.UnitsTime
PICOVOLT - ome.model.enums.UnitsElectricPotential
PICOWATT - ome.model.enums.UnitsPower
pinHoleSize - Variable in class ome.model.core.LogicalChannel
PINHOLESIZE - Static variable in class ome.model.core.LogicalChannel
PIXEL - ome.model.enums.UnitsLength
PixelData - Class in ome.util: Represents a block of pixel data.
PixelData(String, ByteBuffer) - Constructor for class ome.util.PixelData: Default constructor.
PixelDataJob - Class in ome.model.jobs
PixelDataJob() - Constructor for class ome.model.jobs.PixelDataJob
PixelDataJob(Long) - Constructor for class ome.model.jobs.PixelDataJob
PixelDataJob(Long, boolean) - Constructor for class ome.model.jobs.PixelDataJob: Main constructor.
pixels - Variable in class ome.model.core.Channel
pixels - Variable in class ome.model.core.Image
pixels - Variable in class ome.model.core.PlaneInfo
pixels - Variable in class ome.model.display.RenderingDef
pixels - Variable in class ome.model.display.Thumbnail
pixels - Variable in class ome.model.roi.Mask
Pixels - Class in ome.model.core: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Pixels() - Constructor for class ome.model.core.Pixels
Pixels(Long) - Constructor for class ome.model.core.Pixels
Pixels(Long, boolean) - Constructor for class ome.model.core.Pixels: Main constructor.
Pixels(Image, PixelsType, Integer, Integer, Integer, Integer, Integer, String, DimensionOrder) - Constructor for class ome.model.core.Pixels
PIXELS - Static variable in class ome.model.core.Channel
PIXELS - Static variable in class ome.model.core.Image
PIXELS - Static variable in class ome.model.core.PlaneInfo
PIXELS - Static variable in class ome.model.display.RenderingDef
PIXELS - Static variable in class ome.model.display.Thumbnail
PIXELS - Static variable in class ome.model.roi.Mask
Pixels.Details - Class in ome.model.core
pixelsFileMaps - Variable in class ome.model.core.OriginalFile
pixelsFileMaps - Variable in class ome.model.core.Pixels
PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
PIXELSFILEMAPSCOUNTPEROWNER - Static variable in class ome.model.core.OriginalFile
PIXELSFILEMAPSCOUNTPEROWNER - Static variable in class ome.model.core.Pixels
pixelsID - Variable in exception ome.conditions.MissingPyramidException
PixelsOriginalFileMap - Class in ome.model.core: These filter definitions are used by the security system to eliminate non-readable objects from queries.
PixelsOriginalFileMap() - Constructor for class ome.model.core.PixelsOriginalFileMap
PixelsOriginalFileMap(Long) - Constructor for class ome.model.core.PixelsOriginalFileMap
PixelsOriginalFileMap(Long, boolean) - Constructor for class ome.model.core.PixelsOriginalFileMap: Main constructor.
PixelsOriginalFileMap(IObject, IObject) - Constructor for class ome.model.core.PixelsOriginalFileMap
PixelsOriginalFileMap.Details - Class in ome.model.core
pixelsType - Variable in class ome.model.acquisition.OTF
pixelsType - Variable in class ome.model.core.Pixels
pixelsType - Variable in class ome.util.PixelData: Type of the pixel data.
PixelsType - Class in ome.model.enums
PixelsType() - Constructor for class ome.model.enums.PixelsType
PixelsType(Long) - Constructor for class ome.model.enums.PixelsType
PixelsType(Long, boolean) - Constructor for class ome.model.enums.PixelsType: Main constructor.
PixelsType(String) - Constructor for class ome.model.enums.PixelsType
PIXELSTYPE - Static variable in class ome.model.acquisition.OTF
PIXELSTYPE - Static variable in class ome.model.core.Pixels
PixelsType.Details - Class in ome.model.enums
planeInfo - Variable in class ome.model.core.Pixels
PlaneInfo - Class in ome.model.core: These filter definitions are used by the security system to eliminate non-readable objects from queries.
PlaneInfo() - Constructor for class ome.model.core.PlaneInfo
PlaneInfo(Long) - Constructor for class ome.model.core.PlaneInfo
PlaneInfo(Long, boolean) - Constructor for class ome.model.core.PlaneInfo: Main constructor.
PlaneInfo(Pixels, Integer, Integer, Integer) - Constructor for class ome.model.core.PlaneInfo
PLANEINFO - Static variable in class ome.model.core.Pixels
PlaneInfo.Details - Class in ome.model.core
PlaneInfoAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
PlaneInfoAnnotationLink() - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink
PlaneInfoAnnotationLink(Long) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink
PlaneInfoAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink: Main constructor.
PlaneInfoAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink
PlaneInfoAnnotationLink.Details - Class in ome.model.annotations
planePrevious - Variable in class ome.model.display.PlaneSlicingContext
PLANEPREVIOUS - Static variable in class ome.model.display.PlaneSlicingContext
planeSelected - Variable in class ome.model.display.PlaneSlicingContext
PLANESELECTED - Static variable in class ome.model.display.PlaneSlicingContext
PlaneSlicingContext - Class in ome.model.display
PlaneSlicingContext() - Constructor for class ome.model.display.PlaneSlicingContext
PlaneSlicingContext(Integer, Integer, Integer, Integer, Boolean) - Constructor for class ome.model.display.PlaneSlicingContext
PlaneSlicingContext(Long) - Constructor for class ome.model.display.PlaneSlicingContext
PlaneSlicingContext(Long, boolean) - Constructor for class ome.model.display.PlaneSlicingContext: Main constructor.
plate - Variable in class ome.model.screen.PlateAcquisition
plate - Variable in class ome.model.screen.Well
Plate - Class in ome.model.screen: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Plate() - Constructor for class ome.model.screen.Plate
Plate(Long) - Constructor for class ome.model.screen.Plate
Plate(Long, boolean) - Constructor for class ome.model.screen.Plate: Main constructor.
Plate(String) - Constructor for class ome.model.screen.Plate
PLATE - Static variable in class ome.model.screen.PlateAcquisition
PLATE - Static variable in class ome.model.screen.Well
Plate.Details - Class in ome.model.screen
plateAcquisition - Variable in class ome.model.screen.WellSample
PlateAcquisition - Class in ome.model.screen: These filter definitions are used by the security system to eliminate non-readable objects from queries.
PlateAcquisition() - Constructor for class ome.model.screen.PlateAcquisition
PlateAcquisition(Long) - Constructor for class ome.model.screen.PlateAcquisition
PlateAcquisition(Long, boolean) - Constructor for class ome.model.screen.PlateAcquisition: Main constructor.
PlateAcquisition(Plate) - Constructor for class ome.model.screen.PlateAcquisition
PLATEACQUISITION - Static variable in class ome.model.screen.WellSample
PlateAcquisition.Details - Class in ome.model.screen
PlateAcquisitionAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
PlateAcquisitionAnnotationLink() - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink
PlateAcquisitionAnnotationLink(Long) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink
PlateAcquisitionAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink: Main constructor.
PlateAcquisitionAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink
PlateAcquisitionAnnotationLink.Details - Class in ome.model.annotations
plateAcquisitions - Variable in class ome.model.screen.Plate
PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
PlateAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
PlateAnnotationLink() - Constructor for class ome.model.annotations.PlateAnnotationLink
PlateAnnotationLink(Long) - Constructor for class ome.model.annotations.PlateAnnotationLink
PlateAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.PlateAnnotationLink: Main constructor.
PlateAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.PlateAnnotationLink
PlateAnnotationLink.Details - Class in ome.model.annotations
plateLinks - Variable in class ome.model.screen.Screen
PLATELINKS - Static variable in class ome.model.screen.Screen
PLATELINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Screen
pockelCell - Variable in class ome.model.acquisition.Laser
POCKELCELL - Static variable in class ome.model.acquisition.Laser
pockelCellSetting - Variable in class ome.model.core.LogicalChannel
POCKELCELLSETTING - Static variable in class ome.model.core.LogicalChannel
Point - Class in ome.model.roi
Point() - Constructor for class ome.model.roi.Point
Point(Long) - Constructor for class ome.model.roi.Point
Point(Long, boolean) - Constructor for class ome.model.roi.Point: Main constructor.
POINT - ome.model.enums.UnitsLength
points - Variable in class ome.model.roi.Polygon
points - Variable in class ome.model.roi.Polyline
POINTS - Static variable in class ome.model.roi.Polygon
POINTS - Static variable in class ome.model.roi.Polyline
Polygon - Class in ome.model.roi
Polygon() - Constructor for class ome.model.roi.Polygon
Polygon(Long) - Constructor for class ome.model.roi.Polygon
Polygon(Long, boolean) - Constructor for class ome.model.roi.Polygon: Main constructor.
Polyline - Class in ome.model.roi
Polyline() - Constructor for class ome.model.roi.Polyline
Polyline(Long) - Constructor for class ome.model.roi.Polyline
Polyline(Long, boolean) - Constructor for class ome.model.roi.Polyline: Main constructor.
pop(Object) - Method in class ome.util.ContextFilter
positionX - Variable in class ome.model.acquisition.StageLabel
positionX - Variable in class ome.model.core.PlaneInfo
POSITIONX - Static variable in class ome.model.acquisition.StageLabel
POSITIONX - Static variable in class ome.model.core.PlaneInfo
positionY - Variable in class ome.model.acquisition.StageLabel
positionY - Variable in class ome.model.core.PlaneInfo
POSITIONY - Static variable in class ome.model.acquisition.StageLabel
POSITIONY - Static variable in class ome.model.core.PlaneInfo
positionZ - Variable in class ome.model.acquisition.StageLabel
positionZ - Variable in class ome.model.core.PlaneInfo
POSITIONZ - Static variable in class ome.model.acquisition.StageLabel
POSITIONZ - Static variable in class ome.model.core.PlaneInfo
PostgresqlDialect - Class in ome.util: select i from Image i where i.id in (:ids) becomes select i from Image i where i.id in (select id from temp_ids());
PostgresqlDialect() - Constructor for class ome.util.PostgresqlDialect
PostgresSqlAction - Class in ome.util.actions
PostgresSqlAction(JdbcTemplate) - Constructor for class ome.util.actions.PostgresSqlAction
posX - Variable in class ome.model.screen.WellSample
POSX - Static variable in class ome.model.screen.WellSample
posY - Variable in class ome.model.screen.WellSample
POSY - Static variable in class ome.model.screen.WellSample
Pow(long, int) - Constructor for class ome.model.units.Conversion.Pow
Pow(long, int) - Static method in class ome.model.units.Conversion: Static helper for creating Conversion.Pow instances.
power - Variable in class ome.model.acquisition.LightSource
Power - Class in ome.model.units: class storing both a Power and a unit for that Power (e.g.
Power() - Constructor for class ome.model.units.Power: Deprecated.
Power(double, String) - Constructor for class ome.model.units.Power
Power(double, UnitsPower) - Constructor for class ome.model.units.Power
Power(double, Unit<Power>) - Constructor for class ome.model.units.Power
Power(Power) - Constructor for class ome.model.units.Power
POWER - ome.model.units.UNITS
POWER - Static variable in class ome.model.acquisition.LightSource
prepareSession(long, long, long) - Method in class ome.util.actions.PostgresSqlAction
prepareSession(long, long, long) - Method in interface ome.util.SqlAction: Stores the current event context information in a temporary table so that triggers can make use of them.
Pressure - Class in ome.model.units: class storing both a Pressure and a unit for that Pressure (e.g.
Pressure() - Constructor for class ome.model.units.Pressure: Deprecated.
Pressure(double, String) - Constructor for class ome.model.units.Pressure
Pressure(double, UnitsPressure) - Constructor for class ome.model.units.Pressure
Pressure(double, Unit<Pressure>) - Constructor for class ome.model.units.Pressure
Pressure(Pressure) - Constructor for class ome.model.units.Pressure
PRESSURE - ome.model.units.UNITS
previousContext(int) - Method in class ome.util.ContextFilter
previousPatch - Variable in class ome.model.meta.DBPatch
PREVIOUSPATCH - Static variable in class ome.model.meta.DBPatch
previousVersion - Variable in class ome.model.meta.DBPatch
PREVIOUSVERSION - Static variable in class ome.model.meta.DBPatch
Primitive - Interface in ome.model.internal: marker interface for all non-filterable types.
printThrowable(Throwable) - Method in class ome.util.SqlAction.Impl
PRIVATE - Static variable in class ome.model.internal.Permissions: an immutable Permissions instance with permissions only for the object owner..
PrivilegedStringType - Class in ome.util: A Hibernate type for string-valued properties where only privileged readers see non-null values.
PrivilegedStringType(VarcharTypeDescriptor, PrivilegedStringTypeDescriptor) - Constructor for class ome.util.PrivilegedStringType
PrivilegedStringType.FilteredFullAdmin - Class in ome.util: String type for which users read null except for full administrators.
PrivilegedStringType.FilteredFullAdminHidden - Class in ome.util: String type for which users read a dummy value except for full administrators.
PrivilegedStringType.FilteredFullAdminUUID - Class in ome.util: String type for which users read a dummy UUID except for full administrators.
PrivilegedStringType.FilteredRelatedUser - Class in ome.util: String type for which users read null except for (potentially) related users.
PrivilegedStringType.FilteredRelatedUserHidden - Class in ome.util: String type for which users read a dummy value except for (potentially) related users.
PrivilegedStringTypeDescriptor - Class in ome.util: The type descriptors for the privileged string types of PrivilegedStringType.
PrivilegedStringTypeDescriptor() - Constructor for class ome.util.PrivilegedStringTypeDescriptor
PrivilegedStringTypeDescriptor.Filter - Enum in ome.util: The privileged string filters that may be applied.
PrivilegedStringTypeDescriptor.FilteredFullAdmin - Class in ome.util: Type descriptor corresponding to PrivilegedStringTypeDescriptor.Filter.FULL_ADMIN for PrivilegedStringType.FilteredFullAdmin.
PrivilegedStringTypeDescriptor.FilteredFullAdminHidden - Class in ome.util: Type descriptor corresponding to PrivilegedStringTypeDescriptor.Filter.FULL_ADMIN_HIDDEN for PrivilegedStringType.FilteredFullAdminHidden.
PrivilegedStringTypeDescriptor.FilteredFullAdminUUID - Class in ome.util: Type descriptor corresponding to PrivilegedStringTypeDescriptor.Filter.FULL_ADMIN_UUID for PrivilegedStringType.FilteredFullAdminUUID.
PrivilegedStringTypeDescriptor.FilteredRelatedUser - Class in ome.util: Type descriptor corresponding to PrivilegedStringTypeDescriptor.Filter.RELATED_USER for PrivilegedStringType.FilteredRelatedUser.
PrivilegedStringTypeDescriptor.FilteredRelatedUserHidden - Class in ome.util: Type descriptor corresponding to PrivilegedStringTypeDescriptor.Filter.RELATED_USER_HIDDEN for PrivilegedStringType.FilteredRelatedUserHidden.
Project - Class in ome.model.containers: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Project() - Constructor for class ome.model.containers.Project
Project(Long) - Constructor for class ome.model.containers.Project
Project(Long, boolean) - Constructor for class ome.model.containers.Project: Main constructor.
Project(String) - Constructor for class ome.model.containers.Project
Project.Details - Class in ome.model.containers
ProjectAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ProjectAnnotationLink() - Constructor for class ome.model.annotations.ProjectAnnotationLink
ProjectAnnotationLink(Long) - Constructor for class ome.model.annotations.ProjectAnnotationLink
ProjectAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ProjectAnnotationLink: Main constructor.
ProjectAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ProjectAnnotationLink
ProjectAnnotationLink.Details - Class in ome.model.annotations
ProjectDatasetLink - Class in ome.model.containers: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ProjectDatasetLink() - Constructor for class ome.model.containers.ProjectDatasetLink
ProjectDatasetLink(Long) - Constructor for class ome.model.containers.ProjectDatasetLink
ProjectDatasetLink(Long, boolean) - Constructor for class ome.model.containers.ProjectDatasetLink: Main constructor.
ProjectDatasetLink(IObject, IObject) - Constructor for class ome.model.containers.ProjectDatasetLink
ProjectDatasetLink.Details - Class in ome.model.containers
ProjectionAxis - Class in ome.model.enums
ProjectionAxis() - Constructor for class ome.model.enums.ProjectionAxis
ProjectionAxis(Long) - Constructor for class ome.model.enums.ProjectionAxis
ProjectionAxis(Long, boolean) - Constructor for class ome.model.enums.ProjectionAxis: Main constructor.
ProjectionAxis(String) - Constructor for class ome.model.enums.ProjectionAxis
ProjectionAxis.Details - Class in ome.model.enums
ProjectionDef - Class in ome.model.display: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ProjectionDef() - Constructor for class ome.model.display.ProjectionDef
ProjectionDef(Long) - Constructor for class ome.model.display.ProjectionDef
ProjectionDef(Long, boolean) - Constructor for class ome.model.display.ProjectionDef: Main constructor.
ProjectionDef(RenderingDef, ProjectionAxis, ProjectionType, Boolean) - Constructor for class ome.model.display.ProjectionDef
ProjectionDef.Details - Class in ome.model.display
projections - Variable in class ome.model.display.RenderingDef
PROJECTIONS - Static variable in class ome.model.display.RenderingDef
ProjectionType - Class in ome.model.enums
ProjectionType() - Constructor for class ome.model.enums.ProjectionType
ProjectionType(Long) - Constructor for class ome.model.enums.ProjectionType
ProjectionType(Long, boolean) - Constructor for class ome.model.enums.ProjectionType: Main constructor.
ProjectionType(String) - Constructor for class ome.model.enums.ProjectionType
ProjectionType.Details - Class in ome.model.enums
projectLinks - Variable in class ome.model.containers.Dataset
PROJECTLINKS - Static variable in class ome.model.containers.Dataset
PROJECTLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset
protocolDescription - Variable in class ome.model.screen.Screen
PROTOCOLDESCRIPTION - Static variable in class ome.model.screen.Screen
protocolIdentifier - Variable in class ome.model.screen.Screen
PROTOCOLIDENTIFIER - Static variable in class ome.model.screen.Screen
proxy() - Method in class ome.model.acquisition.Arc
proxy() - Method in class ome.model.acquisition.Detector
proxy() - Method in class ome.model.acquisition.DetectorSettings
proxy() - Method in class ome.model.acquisition.Dichroic
proxy() - Method in class ome.model.acquisition.Filament
proxy() - Method in class ome.model.acquisition.Filter
proxy() - Method in class ome.model.acquisition.FilterSet
proxy() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
proxy() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
proxy() - Method in class ome.model.acquisition.GenericExcitationSource
proxy() - Method in class ome.model.acquisition.ImagingEnvironment
proxy() - Method in class ome.model.acquisition.Instrument
proxy() - Method in class ome.model.acquisition.Laser
proxy() - Method in class ome.model.acquisition.LightEmittingDiode
proxy() - Method in class ome.model.acquisition.LightPath
proxy() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
proxy() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
proxy() - Method in class ome.model.acquisition.LightSettings
proxy() - Method in class ome.model.acquisition.Microscope
proxy() - Method in class ome.model.acquisition.Objective
proxy() - Method in class ome.model.acquisition.ObjectiveSettings
proxy() - Method in class ome.model.acquisition.OTF
proxy() - Method in class ome.model.acquisition.StageLabel
proxy() - Method in class ome.model.acquisition.TransmittanceRange
proxy() - Method in class ome.model.annotations.AnnotationAnnotationLink
proxy() - Method in class ome.model.annotations.BooleanAnnotation
proxy() - Method in class ome.model.annotations.ChannelAnnotationLink
proxy() - Method in class ome.model.annotations.CommentAnnotation
proxy() - Method in class ome.model.annotations.DatasetAnnotationLink
proxy() - Method in class ome.model.annotations.DetectorAnnotationLink
proxy() - Method in class ome.model.annotations.DichroicAnnotationLink
proxy() - Method in class ome.model.annotations.DoubleAnnotation
proxy() - Method in class ome.model.annotations.ExperimenterAnnotationLink
proxy() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
proxy() - Method in class ome.model.annotations.FileAnnotation
proxy() - Method in class ome.model.annotations.FilesetAnnotationLink
proxy() - Method in class ome.model.annotations.FilterAnnotationLink
proxy() - Method in class ome.model.annotations.FolderAnnotationLink
proxy() - Method in class ome.model.annotations.ImageAnnotationLink
proxy() - Method in class ome.model.annotations.InstrumentAnnotationLink
proxy() - Method in class ome.model.annotations.LightPathAnnotationLink
proxy() - Method in class ome.model.annotations.LightSourceAnnotationLink
proxy() - Method in class ome.model.annotations.ListAnnotation
proxy() - Method in class ome.model.annotations.LongAnnotation
proxy() - Method in class ome.model.annotations.MapAnnotation
proxy() - Method in class ome.model.annotations.NamespaceAnnotationLink
proxy() - Method in class ome.model.annotations.NodeAnnotationLink
proxy() - Method in class ome.model.annotations.ObjectiveAnnotationLink
proxy() - Method in class ome.model.annotations.OriginalFileAnnotationLink
proxy() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
proxy() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
proxy() - Method in class ome.model.annotations.PlateAnnotationLink
proxy() - Method in class ome.model.annotations.ProjectAnnotationLink
proxy() - Method in class ome.model.annotations.ReagentAnnotationLink
proxy() - Method in class ome.model.annotations.RoiAnnotationLink
proxy() - Method in class ome.model.annotations.ScreenAnnotationLink
proxy() - Method in class ome.model.annotations.SessionAnnotationLink
proxy() - Method in class ome.model.annotations.ShapeAnnotationLink
proxy() - Method in class ome.model.annotations.TagAnnotation
proxy() - Method in class ome.model.annotations.TermAnnotation
proxy() - Method in class ome.model.annotations.TimestampAnnotation
proxy() - Method in class ome.model.annotations.WellAnnotationLink
proxy() - Method in class ome.model.annotations.XmlAnnotation
proxy() - Method in class ome.model.containers.Dataset
proxy() - Method in class ome.model.containers.DatasetImageLink
proxy() - Method in class ome.model.containers.Folder
proxy() - Method in class ome.model.containers.FolderImageLink
proxy() - Method in class ome.model.containers.FolderRoiLink
proxy() - Method in class ome.model.containers.Project
proxy() - Method in class ome.model.containers.ProjectDatasetLink
proxy() - Method in class ome.model.core.Channel
proxy() - Method in class ome.model.core.Image
proxy() - Method in class ome.model.core.LogicalChannel
proxy() - Method in class ome.model.core.OriginalFile
proxy() - Method in class ome.model.core.Pixels
proxy() - Method in class ome.model.core.PixelsOriginalFileMap
proxy() - Method in class ome.model.core.PlaneInfo
proxy() - Method in class ome.model.display.ChannelBinding
proxy() - Method in class ome.model.display.ContrastStretchingContext
proxy() - Method in class ome.model.display.PlaneSlicingContext
proxy() - Method in class ome.model.display.ProjectionDef
proxy() - Method in class ome.model.display.QuantumDef
proxy() - Method in class ome.model.display.RenderingDef
proxy() - Method in class ome.model.display.ReverseIntensityContext
proxy() - Method in class ome.model.display.Thumbnail
proxy() - Method in class ome.model.enums.AcquisitionMode
proxy() - Method in class ome.model.enums.AdminPrivilege
proxy() - Method in class ome.model.enums.ArcType
proxy() - Method in class ome.model.enums.Binning
proxy() - Method in class ome.model.enums.ChecksumAlgorithm
proxy() - Method in class ome.model.enums.ContrastMethod
proxy() - Method in class ome.model.enums.Correction
proxy() - Method in class ome.model.enums.DetectorType
proxy() - Method in class ome.model.enums.DimensionOrder
proxy() - Method in class ome.model.enums.EventType
proxy() - Method in class ome.model.enums.ExperimentType
proxy() - Method in class ome.model.enums.Family
proxy() - Method in class ome.model.enums.FilamentType
proxy() - Method in class ome.model.enums.FilterType
proxy() - Method in class ome.model.enums.Format
proxy() - Method in class ome.model.enums.Illumination
proxy() - Method in class ome.model.enums.Immersion
proxy() - Method in class ome.model.enums.LaserMedium
proxy() - Method in class ome.model.enums.LaserType
proxy() - Method in class ome.model.enums.Medium
proxy() - Method in class ome.model.enums.MicrobeamManipulationType
proxy() - Method in class ome.model.enums.MicroscopeType
proxy() - Method in class ome.model.enums.PhotometricInterpretation
proxy() - Method in class ome.model.enums.PixelsType
proxy() - Method in class ome.model.enums.ProjectionAxis
proxy() - Method in class ome.model.enums.ProjectionType
proxy() - Method in class ome.model.enums.Pulse
proxy() - Method in class ome.model.enums.RenderingModel
proxy() - Method in class ome.model.experiment.Experiment
proxy() - Method in class ome.model.experiment.MicrobeamManipulation
proxy() - Method in class ome.model.fs.Fileset
proxy() - Method in class ome.model.fs.FilesetEntry
proxy() - Method in class ome.model.fs.FilesetJobLink
proxy() - Method in class ome.model.internal.Link
proxy() - Method in class ome.model.jobs.ImportJob: Deprecated.
proxy() - Method in class ome.model.jobs.IndexingJob
proxy() - Method in class ome.model.jobs.IntegrityCheckJob
proxy() - Method in class ome.model.jobs.JobOriginalFileLink
proxy() - Method in class ome.model.jobs.JobStatus
proxy() - Method in class ome.model.jobs.MetadataImportJob
proxy() - Method in class ome.model.jobs.ParseJob
proxy() - Method in class ome.model.jobs.PixelDataJob
proxy() - Method in class ome.model.jobs.ScriptJob
proxy() - Method in class ome.model.jobs.ThumbnailGenerationJob
proxy() - Method in class ome.model.jobs.UploadJob
proxy() - Method in class ome.model.meta.DBPatch
proxy() - Method in class ome.model.meta.Event
proxy() - Method in class ome.model.meta.EventLog
proxy() - Method in class ome.model.meta.Experimenter
proxy() - Method in class ome.model.meta.ExperimenterGroup
proxy() - Method in class ome.model.meta.ExternalInfo
proxy() - Method in class ome.model.meta.GroupExperimenterMap
proxy() - Method in class ome.model.meta.Namespace
proxy() - Method in class ome.model.meta.Node
proxy() - Method in class ome.model.meta.Session
proxy() - Method in class ome.model.meta.Share
proxy() - Method in class ome.model.meta.ShareMember
proxy() - Method in class ome.model.roi.AffineTransform
proxy() - Method in class ome.model.roi.Ellipse
proxy() - Method in class ome.model.roi.Label
proxy() - Method in class ome.model.roi.Line
proxy() - Method in class ome.model.roi.Mask
proxy() - Method in class ome.model.roi.Path: Deprecated.
proxy() - Method in class ome.model.roi.Point
proxy() - Method in class ome.model.roi.Polygon
proxy() - Method in class ome.model.roi.Polyline
proxy() - Method in class ome.model.roi.Rectangle
proxy() - Method in class ome.model.roi.Roi
proxy() - Method in class ome.model.screen.Plate
proxy() - Method in class ome.model.screen.PlateAcquisition
proxy() - Method in class ome.model.screen.Reagent
proxy() - Method in class ome.model.screen.Screen
proxy() - Method in class ome.model.screen.ScreenPlateLink
proxy() - Method in class ome.model.screen.Well
proxy() - Method in class ome.model.screen.WellReagentLink
proxy() - Method in class ome.model.screen.WellSample
proxy() - Method in class ome.model.stats.StatsInfo
PSI - ome.model.enums.UnitsPressure
PsqlStrings - Class in ome.util.actions
PUBLIC - Static variable in class ome.model.internal.Permissions: an immutable Permissions instance with all Rights granted.
pulse - Variable in class ome.model.acquisition.Laser
Pulse - Class in ome.model.enums
Pulse() - Constructor for class ome.model.enums.Pulse
Pulse(Long) - Constructor for class ome.model.enums.Pulse
Pulse(Long, boolean) - Constructor for class ome.model.enums.Pulse: Main constructor.
Pulse(String) - Constructor for class ome.model.enums.Pulse
PULSE - Static variable in class ome.model.acquisition.Laser
Pulse.Details - Class in ome.model.enums
pump - Variable in class ome.model.acquisition.Laser
PUMP - Static variable in class ome.model.acquisition.Laser
push(Object) - Method in class ome.util.ContextFilter
putAt(String, Object) - Method in class ome.model.acquisition.Arc
putAt(String, Object) - Method in class ome.model.acquisition.Detector
putAt(String, Object) - Method in class ome.model.acquisition.DetectorSettings
putAt(String, Object) - Method in class ome.model.acquisition.Dichroic
putAt(String, Object) - Method in class ome.model.acquisition.Filament
putAt(String, Object) - Method in class ome.model.acquisition.Filter
putAt(String, Object) - Method in class ome.model.acquisition.FilterSet
putAt(String, Object) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
putAt(String, Object) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
putAt(String, Object) - Method in class ome.model.acquisition.GenericExcitationSource
putAt(String, Object) - Method in class ome.model.acquisition.ImagingEnvironment
putAt(String, Object) - Method in class ome.model.acquisition.Instrument
putAt(String, Object) - Method in class ome.model.acquisition.Laser
putAt(String, Object) - Method in class ome.model.acquisition.LightEmittingDiode
putAt(String, Object) - Method in class ome.model.acquisition.LightPath
putAt(String, Object) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
putAt(String, Object) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
putAt(String, Object) - Method in class ome.model.acquisition.LightSettings
putAt(String, Object) - Method in class ome.model.acquisition.LightSource
putAt(String, Object) - Method in class ome.model.acquisition.Microscope
putAt(String, Object) - Method in class ome.model.acquisition.Objective
putAt(String, Object) - Method in class ome.model.acquisition.ObjectiveSettings
putAt(String, Object) - Method in class ome.model.acquisition.OTF
putAt(String, Object) - Method in class ome.model.acquisition.StageLabel
putAt(String, Object) - Method in class ome.model.acquisition.TransmittanceRange
putAt(String, Object) - Method in class ome.model.annotations.Annotation
putAt(String, Object) - Method in class ome.model.annotations.AnnotationAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.BasicAnnotation
putAt(String, Object) - Method in class ome.model.annotations.BooleanAnnotation
putAt(String, Object) - Method in class ome.model.annotations.ChannelAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.CommentAnnotation
putAt(String, Object) - Method in class ome.model.annotations.DatasetAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.DetectorAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.DichroicAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.DoubleAnnotation
putAt(String, Object) - Method in class ome.model.annotations.ExperimenterAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.FileAnnotation
putAt(String, Object) - Method in class ome.model.annotations.FilesetAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.FilterAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.FolderAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.ImageAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.InstrumentAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.LightPathAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.LightSourceAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.ListAnnotation
putAt(String, Object) - Method in class ome.model.annotations.LongAnnotation
putAt(String, Object) - Method in class ome.model.annotations.MapAnnotation
putAt(String, Object) - Method in class ome.model.annotations.NamespaceAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.NodeAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.NumericAnnotation
putAt(String, Object) - Method in class ome.model.annotations.ObjectiveAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.OriginalFileAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.PlateAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.ProjectAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.ReagentAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.RoiAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.ScreenAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.SessionAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.ShapeAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.TagAnnotation
putAt(String, Object) - Method in class ome.model.annotations.TermAnnotation
putAt(String, Object) - Method in class ome.model.annotations.TextAnnotation
putAt(String, Object) - Method in class ome.model.annotations.TimestampAnnotation
putAt(String, Object) - Method in class ome.model.annotations.TypeAnnotation
putAt(String, Object) - Method in class ome.model.annotations.WellAnnotationLink
putAt(String, Object) - Method in class ome.model.annotations.XmlAnnotation
putAt(String, Object) - Method in class ome.model.containers.Dataset
putAt(String, Object) - Method in class ome.model.containers.DatasetImageLink
putAt(String, Object) - Method in class ome.model.containers.Folder
putAt(String, Object) - Method in class ome.model.containers.FolderImageLink
putAt(String, Object) - Method in class ome.model.containers.FolderRoiLink
putAt(String, Object) - Method in class ome.model.containers.Project
putAt(String, Object) - Method in class ome.model.containers.ProjectDatasetLink
putAt(String, Object) - Method in class ome.model.core.Channel
putAt(String, Object) - Method in class ome.model.core.Image
putAt(String, Object) - Method in class ome.model.core.LogicalChannel
putAt(String, Object) - Method in class ome.model.core.OriginalFile
putAt(String, Object) - Method in class ome.model.core.Pixels
putAt(String, Object) - Method in class ome.model.core.PixelsOriginalFileMap
putAt(String, Object) - Method in class ome.model.core.PlaneInfo
putAt(String, Object) - Method in class ome.model.display.ChannelBinding
putAt(String, Object) - Method in class ome.model.display.CodomainMapContext
putAt(String, Object) - Method in class ome.model.display.ContrastStretchingContext
putAt(String, Object) - Method in class ome.model.display.PlaneSlicingContext
putAt(String, Object) - Method in class ome.model.display.ProjectionDef
putAt(String, Object) - Method in class ome.model.display.QuantumDef
putAt(String, Object) - Method in class ome.model.display.RenderingDef
putAt(String, Object) - Method in class ome.model.display.ReverseIntensityContext
putAt(String, Object) - Method in class ome.model.display.Thumbnail
putAt(String, Object) - Method in class ome.model.enums.AcquisitionMode
putAt(String, Object) - Method in class ome.model.enums.AdminPrivilege
putAt(String, Object) - Method in class ome.model.enums.ArcType
putAt(String, Object) - Method in class ome.model.enums.Binning
putAt(String, Object) - Method in class ome.model.enums.ChecksumAlgorithm
putAt(String, Object) - Method in class ome.model.enums.ContrastMethod
putAt(String, Object) - Method in class ome.model.enums.Correction
putAt(String, Object) - Method in class ome.model.enums.DetectorType
putAt(String, Object) - Method in class ome.model.enums.DimensionOrder
putAt(String, Object) - Method in class ome.model.enums.EventType
putAt(String, Object) - Method in class ome.model.enums.ExperimentType
putAt(String, Object) - Method in class ome.model.enums.Family
putAt(String, Object) - Method in class ome.model.enums.FilamentType
putAt(String, Object) - Method in class ome.model.enums.FilterType
putAt(String, Object) - Method in class ome.model.enums.Format
putAt(String, Object) - Method in class ome.model.enums.Illumination
putAt(String, Object) - Method in class ome.model.enums.Immersion
putAt(String, Object) - Method in class ome.model.enums.LaserMedium
putAt(String, Object) - Method in class ome.model.enums.LaserType
putAt(String, Object) - Method in class ome.model.enums.Medium
putAt(String, Object) - Method in class ome.model.enums.MicrobeamManipulationType
putAt(String, Object) - Method in class ome.model.enums.MicroscopeType
putAt(String, Object) - Method in class ome.model.enums.PhotometricInterpretation
putAt(String, Object) - Method in class ome.model.enums.PixelsType
putAt(String, Object) - Method in class ome.model.enums.ProjectionAxis
putAt(String, Object) - Method in class ome.model.enums.ProjectionType
putAt(String, Object) - Method in class ome.model.enums.Pulse
putAt(String, Object) - Method in class ome.model.enums.RenderingModel
putAt(String, Object) - Method in class ome.model.experiment.Experiment
putAt(String, Object) - Method in class ome.model.experiment.MicrobeamManipulation
putAt(String, Object) - Method in class ome.model.fs.Fileset
putAt(String, Object) - Method in class ome.model.fs.FilesetEntry
putAt(String, Object) - Method in class ome.model.fs.FilesetJobLink
putAt(String, Object) - Method in class ome.model.internal.Details
putAt(String, Object) - Method in class ome.model.internal.Link
putAt(String, Object) - Method in interface ome.model.IObject: stores a value in this instance.
putAt(String, Object) - Method in class ome.model.jobs.ImportJob: Deprecated.
putAt(String, Object) - Method in class ome.model.jobs.IndexingJob
putAt(String, Object) - Method in class ome.model.jobs.IntegrityCheckJob
putAt(String, Object) - Method in class ome.model.jobs.Job
putAt(String, Object) - Method in class ome.model.jobs.JobOriginalFileLink
putAt(String, Object) - Method in class ome.model.jobs.JobStatus
putAt(String, Object) - Method in class ome.model.jobs.MetadataImportJob
putAt(String, Object) - Method in class ome.model.jobs.ParseJob
putAt(String, Object) - Method in class ome.model.jobs.PixelDataJob
putAt(String, Object) - Method in class ome.model.jobs.ScriptJob
putAt(String, Object) - Method in class ome.model.jobs.ThumbnailGenerationJob
putAt(String, Object) - Method in class ome.model.jobs.UploadJob
putAt(String, Object) - Method in class ome.model.meta.DBPatch
putAt(String, Object) - Method in class ome.model.meta.Event
putAt(String, Object) - Method in class ome.model.meta.EventLog
putAt(String, Object) - Method in class ome.model.meta.Experimenter
putAt(String, Object) - Method in class ome.model.meta.ExperimenterGroup
putAt(String, Object) - Method in class ome.model.meta.ExternalInfo
putAt(String, Object) - Method in class ome.model.meta.GroupExperimenterMap
putAt(String, Object) - Method in class ome.model.meta.Namespace
putAt(String, Object) - Method in class ome.model.meta.Node
putAt(String, Object) - Method in class ome.model.meta.Session
putAt(String, Object) - Method in class ome.model.meta.Share
putAt(String, Object) - Method in class ome.model.meta.ShareMember
putAt(String, Object) - Method in class ome.model.roi.AffineTransform
putAt(String, Object) - Method in class ome.model.roi.Ellipse
putAt(String, Object) - Method in class ome.model.roi.Label
putAt(String, Object) - Method in class ome.model.roi.Line
putAt(String, Object) - Method in class ome.model.roi.Mask
putAt(String, Object) - Method in class ome.model.roi.Path: Deprecated.
putAt(String, Object) - Method in class ome.model.roi.Point
putAt(String, Object) - Method in class ome.model.roi.Polygon
putAt(String, Object) - Method in class ome.model.roi.Polyline
putAt(String, Object) - Method in class ome.model.roi.Rectangle
putAt(String, Object) - Method in class ome.model.roi.Roi
putAt(String, Object) - Method in class ome.model.roi.Shape
putAt(String, Object) - Method in class ome.model.screen.Plate
putAt(String, Object) - Method in class ome.model.screen.PlateAcquisition
putAt(String, Object) - Method in class ome.model.screen.Reagent
putAt(String, Object) - Method in class ome.model.screen.Screen
putAt(String, Object) - Method in class ome.model.screen.ScreenPlateLink
putAt(String, Object) - Method in class ome.model.screen.Well
putAt(String, Object) - Method in class ome.model.screen.WellReagentLink
putAt(String, Object) - Method in class ome.model.screen.WellSample
putAt(String, Object) - Method in class ome.model.stats.StatsInfo
putAt(String, Object) - Method in class ome.util.PermDetails

Q

quantization - Variable in class ome.model.display.RenderingDef
QUANTIZATION - Static variable in class ome.model.display.RenderingDef
QuantumDef - Class in ome.model.display: These filter definitions are used by the security system to eliminate non-readable objects from queries.
QuantumDef() - Constructor for class ome.model.display.QuantumDef
QuantumDef(Integer, Integer, Integer) - Constructor for class ome.model.display.QuantumDef
QuantumDef(Long) - Constructor for class ome.model.display.QuantumDef
QuantumDef(Long, boolean) - Constructor for class ome.model.display.QuantumDef: Main constructor.
QuantumDef.Details - Class in ome.model.display
QueryParameter - Class in ome.parameters: arbitrary query parameter used by ome.api.IQuery.
QueryParameter(String, Class, Object) - Constructor for class ome.parameters.QueryParameter
queryParameters() - Method in class ome.parameters.Parameters: copies all QueryParameters to an array.

R

radiusX - Variable in class ome.model.roi.Ellipse
RADIUSX - Static variable in class ome.model.roi.Ellipse
radiusY - Variable in class ome.model.roi.Ellipse
RADIUSY - Static variable in class ome.model.roi.Ellipse
RANKINE - ome.model.enums.UnitsTemperature
Rat(long, long) - Constructor for class ome.model.units.Conversion.Rat
Rat(Conversion...) - Constructor for class ome.model.units.Conversion.Rat
Rat(long, long) - Static method in class ome.model.units.Conversion: Static helper for creating Conversion.Rat instances.
Rat(Conversion...) - Static method in class ome.model.units.Conversion: Static helper for creating Conversion.Rat instances.
RdfPrinter - Class in ome.util: walks an object graph producing RDF-like output.
RdfPrinter() - Constructor for class ome.util.RdfPrinter
READ - ome.model.internal.Permissions.Right
READ_ONLY - Static variable in class ome.model.internal.Permissions: an immutable Permissions instance with all Permissions.Right.WRITE rights turned off.
ReadOnlyGroupSecurityViolation - Exception in ome.conditions: Extension of GroupSecurityViolation signalling that an admin or group owner has tried to make a modification in a private group OR that the member of a read-only group has tried to do the same.
ReadOnlyGroupSecurityViolation(String) - Constructor for exception ome.conditions.ReadOnlyGroupSecurityViolation
readOutRate - Variable in class ome.model.acquisition.DetectorSettings
READOUTRATE - Static variable in class ome.model.acquisition.DetectorSettings
Reagent - Class in ome.model.screen: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Reagent() - Constructor for class ome.model.screen.Reagent
Reagent(Long) - Constructor for class ome.model.screen.Reagent
Reagent(Long, boolean) - Constructor for class ome.model.screen.Reagent: Main constructor.
Reagent(Screen) - Constructor for class ome.model.screen.Reagent
Reagent.Details - Class in ome.model.screen
ReagentAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ReagentAnnotationLink() - Constructor for class ome.model.annotations.ReagentAnnotationLink
ReagentAnnotationLink(Long) - Constructor for class ome.model.annotations.ReagentAnnotationLink
ReagentAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ReagentAnnotationLink: Main constructor.
ReagentAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ReagentAnnotationLink
ReagentAnnotationLink.Details - Class in ome.model.annotations
reagentIdentifier - Variable in class ome.model.screen.Reagent
REAGENTIDENTIFIER - Static variable in class ome.model.screen.Reagent
reagentLinks - Variable in class ome.model.screen.Well
REAGENTLINKS - Static variable in class ome.model.screen.Well
REAGENTLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Well
reagents - Variable in class ome.model.screen.Screen
REAGENTS - Static variable in class ome.model.screen.Screen
reagentSetDescription - Variable in class ome.model.screen.Screen
REAGENTSETDESCRIPTION - Static variable in class ome.model.screen.Screen
reagentSetIdentifier - Variable in class ome.model.screen.Screen
REAGENTSETIDENTIFIER - Static variable in class ome.model.screen.Screen
Rectangle - Class in ome.model.roi
Rectangle() - Constructor for class ome.model.roi.Rectangle
Rectangle(Long) - Constructor for class ome.model.roi.Rectangle
Rectangle(Long, boolean) - Constructor for class ome.model.roi.Rectangle: Main constructor.
red - Variable in class ome.model.core.Channel
red - Variable in class ome.model.display.ChannelBinding
red - Variable in class ome.model.screen.Well
RED - Static variable in class ome.model.core.Channel
RED - Static variable in class ome.model.display.ChannelBinding
RED - Static variable in class ome.model.screen.Well
ref - Variable in class ome.model.display.Thumbnail
REF - Static variable in class ome.model.display.Thumbnail
REFERENCEFRAME - ome.model.enums.UnitsLength
reflectiveNewInstance(T) - Static method in class ome.util.ShallowCopy
refractiveIndex - Variable in class ome.model.acquisition.ObjectiveSettings
REFRACTIVEINDEX - Static variable in class ome.model.acquisition.ObjectiveSettings
refreshEventLogFromUpdatedAnnotations() - Method in class ome.util.SqlAction.Impl
refreshEventLogFromUpdatedAnnotations() - Method in interface ome.util.SqlAction: Convert the _reindexing_required table to REINDEX entries in the event log.
RELATED_USER - ome.util.PrivilegedStringTypeDescriptor.Filter
RELATED_USER_HIDDEN - ome.util.PrivilegedStringTypeDescriptor.Filter
relatedTo - Variable in class ome.model.core.Pixels: Deprecated.
RELATEDTO - Static variable in class ome.model.core.Pixels: Deprecated.
releaseSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction
releaseSavepoint(String) - Method in interface ome.util.SqlAction
remove() - Method in class ome.util.EmptyIterator
remove(Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister
removeAnnotationAnnotationLink(AnnotationAnnotationLink) - Method in class ome.model.annotations.Annotation: removes a single element from this set and makes the inverse call on ome.model.annotations.AnnotationAnnotationLink
removeAnnotationAnnotationLink(AnnotationAnnotationLink, boolean) - Method in class ome.model.annotations.Annotation: removes the given AnnotationAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkAnnotation again if loaded.
removeAnnotationAnnotationLinkSet(Collection<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation: use like removeAnnotationAnnotationLink
removeChannel(Channel) - Method in class ome.model.core.LogicalChannel: removes a single element from this set and makes the inverse call on ome.model.core.Channel
removeChannel(Channel) - Method in class ome.model.core.Pixels: removes a single element from this set and makes the inverse call on ome.model.core.Channel
removeChannelAnnotationLink(ChannelAnnotationLink) - Method in class ome.model.core.Channel: removes a single element from this set and makes the inverse call on ome.model.annotations.ChannelAnnotationLink
removeChannelAnnotationLink(ChannelAnnotationLink, boolean) - Method in class ome.model.core.Channel: removes the given ChannelAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkChannel again if loaded.
removeChannelAnnotationLinkSet(Collection<ChannelAnnotationLink>) - Method in class ome.model.core.Channel: use like removeChannelAnnotationLink
removeChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef: removes a single element from this set and makes the inverse call on ome.model.display.ChannelBinding
removeChannelBindingSet(Collection<ChannelBinding>) - Method in class ome.model.display.RenderingDef: use like removeChannelBinding
removeChannelSet(Collection<Channel>) - Method in class ome.model.core.LogicalChannel: use like removeChannel
removeChannelSet(Collection<Channel>) - Method in class ome.model.core.Pixels: use like removeChannel
removeChildFolders(Folder) - Method in class ome.model.containers.Folder: removes a single element from this set and makes the inverse call on ome.model.containers.Folder
removeChildFoldersSet(Collection<Folder>) - Method in class ome.model.containers.Folder: use like removeFolder
removeCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding: removes a single element from this set and makes the inverse call on ome.model.display.CodomainMapContext
removeCodomainMapContextSet(Collection<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding: use like removeCodomainMapContext
removeDatasetAnnotationLink(DatasetAnnotationLink) - Method in class ome.model.containers.Dataset: removes a single element from this set and makes the inverse call on ome.model.annotations.DatasetAnnotationLink
removeDatasetAnnotationLink(DatasetAnnotationLink, boolean) - Method in class ome.model.containers.Dataset: removes the given DatasetAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkDataset again if loaded.
removeDatasetAnnotationLinkSet(Collection<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset: use like removeDatasetAnnotationLink
removeDatasetImageLink(DatasetImageLink) - Method in class ome.model.containers.Dataset: removes a single element from this set and makes the inverse call on ome.model.containers.DatasetImageLink
removeDatasetImageLink(DatasetImageLink) - Method in class ome.model.core.Image: removes a single element from this set and makes the inverse call on ome.model.containers.DatasetImageLink
removeDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.containers.Dataset: removes the given DatasetImageLink from imageLinks, allowing for recursion -- whether or not the removal will call unlinkDataset again if loaded.
removeDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.core.Image: removes the given DatasetImageLink from datasetLinks, allowing for recursion -- whether or not the removal will call unlinkImage again if loaded.
removeDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.containers.Dataset: use like removeDatasetImageLink
removeDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.core.Image: use like removeDatasetImageLink
removeDetector(Detector) - Method in class ome.model.acquisition.Instrument: removes a single element from this set and makes the inverse call on ome.model.acquisition.Detector
removeDetectorAnnotationLink(DetectorAnnotationLink) - Method in class ome.model.acquisition.Detector: removes a single element from this set and makes the inverse call on ome.model.annotations.DetectorAnnotationLink
removeDetectorAnnotationLink(DetectorAnnotationLink, boolean) - Method in class ome.model.acquisition.Detector: removes the given DetectorAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkDetector again if loaded.
removeDetectorAnnotationLinkSet(Collection<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector: use like removeDetectorAnnotationLink
removeDetectorSet(Collection<Detector>) - Method in class ome.model.acquisition.Instrument: use like removeDetector
removeDichroic(Dichroic) - Method in class ome.model.acquisition.Instrument: removes a single element from this set and makes the inverse call on ome.model.acquisition.Dichroic
removeDichroicAnnotationLink(DichroicAnnotationLink) - Method in class ome.model.acquisition.Dichroic: removes a single element from this set and makes the inverse call on ome.model.annotations.DichroicAnnotationLink
removeDichroicAnnotationLink(DichroicAnnotationLink, boolean) - Method in class ome.model.acquisition.Dichroic: removes the given DichroicAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkDichroic again if loaded.
removeDichroicAnnotationLinkSet(Collection<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic: use like removeDichroicAnnotationLink
removeDichroicSet(Collection<Dichroic>) - Method in class ome.model.acquisition.Instrument: use like removeDichroic
RemovedSessionException - Exception in ome.conditions: Client attempted to access a session which has either expired or been closed manually.
RemovedSessionException(String) - Constructor for exception ome.conditions.RemovedSessionException
removeEvent(Event) - Method in class ome.model.meta.Session: removes a single element from this set and makes the inverse call on ome.model.meta.Event
removeEventLog(EventLog) - Method in class ome.model.meta.Event: removes a single element from this set and makes the inverse call on ome.model.meta.EventLog
removeEventLogSet(Collection<EventLog>) - Method in class ome.model.meta.Event: use like removeEventLog
removeEventSet(Collection<Event>) - Method in class ome.model.meta.Session: use like removeEvent
removeExperimenterAnnotationLink(ExperimenterAnnotationLink) - Method in class ome.model.meta.Experimenter: removes a single element from this set and makes the inverse call on ome.model.annotations.ExperimenterAnnotationLink
removeExperimenterAnnotationLink(ExperimenterAnnotationLink, boolean) - Method in class ome.model.meta.Experimenter: removes the given ExperimenterAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkExperimenter again if loaded.
removeExperimenterAnnotationLinkSet(Collection<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter: use like removeExperimenterAnnotationLink
removeExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink) - Method in class ome.model.meta.ExperimenterGroup: removes a single element from this set and makes the inverse call on ome.model.annotations.ExperimenterGroupAnnotationLink
removeExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink, boolean) - Method in class ome.model.meta.ExperimenterGroup: removes the given ExperimenterGroupAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkExperimenterGroup again if loaded.
removeExperimenterGroupAnnotationLinkSet(Collection<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup: use like removeExperimenterGroupAnnotationLink
removeFilesetAnnotationLink(FilesetAnnotationLink) - Method in class ome.model.fs.Fileset: removes a single element from this set and makes the inverse call on ome.model.annotations.FilesetAnnotationLink
removeFilesetAnnotationLink(FilesetAnnotationLink, boolean) - Method in class ome.model.fs.Fileset: removes the given FilesetAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFileset again if loaded.
removeFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset: use like removeFilesetAnnotationLink
removeFilesetEntry(FilesetEntry) - Method in class ome.model.core.OriginalFile: removes a single element from this set and makes the inverse call on ome.model.fs.FilesetEntry
removeFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset: removes a single element from this set and makes the inverse call on ome.model.fs.FilesetEntry
removeFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.core.OriginalFile: use like removeFilesetEntry
removeFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.fs.Fileset: use like removeFilesetEntry
removeFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset: removes a single element from this set and makes the inverse call on ome.model.fs.FilesetJobLink
removeFilesetJobLink(FilesetJobLink, boolean) - Method in class ome.model.fs.Fileset: removes the given FilesetJobLink from jobLinks, allowing for recursion -- whether or not the removal will call unlinkFileset again if loaded.
removeFilesetJobLinkSet(Collection<FilesetJobLink>) - Method in class ome.model.fs.Fileset: use like removeFilesetJobLink
removeFilter(Filter) - Method in class ome.model.acquisition.Instrument: removes a single element from this set and makes the inverse call on ome.model.acquisition.Filter
removeFilterAnnotationLink(FilterAnnotationLink) - Method in class ome.model.acquisition.Filter: removes a single element from this set and makes the inverse call on ome.model.annotations.FilterAnnotationLink
removeFilterAnnotationLink(FilterAnnotationLink, boolean) - Method in class ome.model.acquisition.Filter: removes the given FilterAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFilter again if loaded.
removeFilterAnnotationLinkSet(Collection<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter: use like removeFilterAnnotationLink
removeFilterSet(Collection<Filter>) - Method in class ome.model.acquisition.Instrument: use like removeFilter
removeFilterSet(FilterSet) - Method in class ome.model.acquisition.Instrument: removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSet
removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.Filter: removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetEmissionFilterLink
removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.FilterSet: removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetEmissionFilterLink
removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.Filter: removes the given FilterSetEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilter again if loaded.
removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet: removes the given FilterSetEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilterSet again if loaded.
removeFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter: use like removeFilterSetEmissionFilterLink
removeFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet: use like removeFilterSetEmissionFilterLink
removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.Filter: removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetExcitationFilterLink
removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.FilterSet: removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetExcitationFilterLink
removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.Filter: removes the given FilterSetExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilter again if loaded.
removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet: removes the given FilterSetExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilterSet again if loaded.
removeFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter: use like removeFilterSetExcitationFilterLink
removeFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet: use like removeFilterSetExcitationFilterLink
removeFilterSetSet(Collection<FilterSet>) - Method in class ome.model.acquisition.Instrument: use like removeFilterSet
removeFolderAnnotationLink(FolderAnnotationLink) - Method in class ome.model.containers.Folder: removes a single element from this set and makes the inverse call on ome.model.annotations.FolderAnnotationLink
removeFolderAnnotationLink(FolderAnnotationLink, boolean) - Method in class ome.model.containers.Folder: removes the given FolderAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFolder again if loaded.
removeFolderAnnotationLinkSet(Collection<FolderAnnotationLink>) - Method in class ome.model.containers.Folder: use like removeFolderAnnotationLink
removeFolderImageLink(FolderImageLink) - Method in class ome.model.containers.Folder: removes a single element from this set and makes the inverse call on ome.model.containers.FolderImageLink
removeFolderImageLink(FolderImageLink) - Method in class ome.model.core.Image: removes a single element from this set and makes the inverse call on ome.model.containers.FolderImageLink
removeFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.containers.Folder: removes the given FolderImageLink from imageLinks, allowing for recursion -- whether or not the removal will call unlinkFolder again if loaded.
removeFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.core.Image: removes the given FolderImageLink from folderLinks, allowing for recursion -- whether or not the removal will call unlinkImage again if loaded.
removeFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.containers.Folder: use like removeFolderImageLink
removeFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.core.Image: use like removeFolderImageLink
removeFolderRoiLink(FolderRoiLink) - Method in class ome.model.containers.Folder: removes a single element from this set and makes the inverse call on ome.model.containers.FolderRoiLink
removeFolderRoiLink(FolderRoiLink) - Method in class ome.model.roi.Roi: removes a single element from this set and makes the inverse call on ome.model.containers.FolderRoiLink
removeFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.containers.Folder: removes the given FolderRoiLink from roiLinks, allowing for recursion -- whether or not the removal will call unlinkFolder again if loaded.
removeFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.roi.Roi: removes the given FolderRoiLink from folderLinks, allowing for recursion -- whether or not the removal will call unlinkRoi again if loaded.
removeFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.containers.Folder: use like removeFolderRoiLink
removeFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.roi.Roi: use like removeFolderRoiLink
removeGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter: removes a single element from this set and makes the inverse call on ome.model.meta.GroupExperimenterMap
removeGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.ExperimenterGroup: removes a single element from this set and makes the inverse call on ome.model.meta.GroupExperimenterMap
removeGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.Experimenter: removes the given GroupExperimenterMap from groupExperimenterMap, allowing for recursion -- whether or not the removal will call unlinkExperimenter again if loaded.
removeGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.ExperimenterGroup: removes the given GroupExperimenterMap from groupExperimenterMap, allowing for recursion -- whether or not the removal will call unlinkExperimenterGroup again if loaded.
removeGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter: use like removeGroupExperimenterMap
removeGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup: use like removeGroupExperimenterMap
removeImage(Image) - Method in class ome.model.fs.Fileset: removes a single element from this set and makes the inverse call on ome.model.core.Image
removeImageAnnotationLink(ImageAnnotationLink) - Method in class ome.model.core.Image: removes a single element from this set and makes the inverse call on ome.model.annotations.ImageAnnotationLink
removeImageAnnotationLink(ImageAnnotationLink, boolean) - Method in class ome.model.core.Image: removes the given ImageAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkImage again if loaded.
removeImageAnnotationLinkSet(Collection<ImageAnnotationLink>) - Method in class ome.model.core.Image: use like removeImageAnnotationLink
removeImageSet(Collection<Image>) - Method in class ome.model.fs.Fileset: use like removeImage
removeInstrumentAnnotationLink(InstrumentAnnotationLink) - Method in class ome.model.acquisition.Instrument: removes a single element from this set and makes the inverse call on ome.model.annotations.InstrumentAnnotationLink
removeInstrumentAnnotationLink(InstrumentAnnotationLink, boolean) - Method in class ome.model.acquisition.Instrument: removes the given InstrumentAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkInstrument again if loaded.
removeInstrumentAnnotationLinkSet(Collection<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument: use like removeInstrumentAnnotationLink
removeJobOriginalFileLink(JobOriginalFileLink) - Method in class ome.model.jobs.Job: removes a single element from this set and makes the inverse call on ome.model.jobs.JobOriginalFileLink
removeJobOriginalFileLink(JobOriginalFileLink, boolean) - Method in class ome.model.jobs.Job: removes the given JobOriginalFileLink from originalFileLinks, allowing for recursion -- whether or not the removal will call unlinkJob again if loaded.
removeJobOriginalFileLinkSet(Collection<JobOriginalFileLink>) - Method in class ome.model.jobs.Job: use like removeJobOriginalFileLink
removeLightPathAnnotationLink(LightPathAnnotationLink) - Method in class ome.model.acquisition.LightPath: removes a single element from this set and makes the inverse call on ome.model.annotations.LightPathAnnotationLink
removeLightPathAnnotationLink(LightPathAnnotationLink, boolean) - Method in class ome.model.acquisition.LightPath: removes the given LightPathAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.
removeLightPathAnnotationLinkSet(Collection<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath: use like removeLightPathAnnotationLink
removeLightPathEmissionFilterLink(LightPathEmissionFilterLink) - Method in class ome.model.acquisition.LightPath: removes a single element from this set and makes the inverse call on ome.model.acquisition.LightPathEmissionFilterLink
removeLightPathEmissionFilterLink(LightPathEmissionFilterLink, boolean) - Method in class ome.model.acquisition.LightPath: removes the given LightPathEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.
removeLightPathEmissionFilterLinkSet(Collection<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath: use like removeLightPathEmissionFilterLink
removeLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath: removes a single element from this set and makes the inverse call on ome.model.acquisition.LightPathExcitationFilterLink
removeLightPathExcitationFilterLink(LightPathExcitationFilterLink, boolean) - Method in class ome.model.acquisition.LightPath: removes the given LightPathExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.
removeLightPathExcitationFilterLinkSet(Collection<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath: use like removeLightPathExcitationFilterLink
removeLightSettings(LightSettings) - Method in class ome.model.experiment.MicrobeamManipulation: removes a single element from this set and makes the inverse call on ome.model.acquisition.LightSettings
removeLightSettingsSet(Collection<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation: use like removeLightSettings
removeLightSource(LightSource) - Method in class ome.model.acquisition.Instrument: removes a single element from this set and makes the inverse call on ome.model.acquisition.LightSource
removeLightSourceAnnotationLink(LightSourceAnnotationLink) - Method in class ome.model.acquisition.LightSource: removes a single element from this set and makes the inverse call on ome.model.annotations.LightSourceAnnotationLink
removeLightSourceAnnotationLink(LightSourceAnnotationLink, boolean) - Method in class ome.model.acquisition.LightSource: removes the given LightSourceAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkLightSource again if loaded.
removeLightSourceAnnotationLinkSet(Collection<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource: use like removeLightSourceAnnotationLink
removeLightSourceSet(Collection<LightSource>) - Method in class ome.model.acquisition.Instrument: use like removeLightSource
removeMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.experiment.Experiment: removes a single element from this set and makes the inverse call on ome.model.experiment.MicrobeamManipulation
removeMicrobeamManipulationSet(Collection<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment: use like removeMicrobeamManipulation
removeNamespaceAnnotationLink(NamespaceAnnotationLink) - Method in class ome.model.meta.Namespace: removes a single element from this set and makes the inverse call on ome.model.annotations.NamespaceAnnotationLink
removeNamespaceAnnotationLink(NamespaceAnnotationLink, boolean) - Method in class ome.model.meta.Namespace: removes the given NamespaceAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkNamespace again if loaded.
removeNamespaceAnnotationLinkSet(Collection<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace: use like removeNamespaceAnnotationLink
removeNodeAnnotationLink(NodeAnnotationLink) - Method in class ome.model.meta.Node: removes a single element from this set and makes the inverse call on ome.model.annotations.NodeAnnotationLink
removeNodeAnnotationLink(NodeAnnotationLink, boolean) - Method in class ome.model.meta.Node: removes the given NodeAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkNode again if loaded.
removeNodeAnnotationLinkSet(Collection<NodeAnnotationLink>) - Method in class ome.model.meta.Node: use like removeNodeAnnotationLink
removeObjective(Objective) - Method in class ome.model.acquisition.Instrument: removes a single element from this set and makes the inverse call on ome.model.acquisition.Objective
removeObjectiveAnnotationLink(ObjectiveAnnotationLink) - Method in class ome.model.acquisition.Objective: removes a single element from this set and makes the inverse call on ome.model.annotations.ObjectiveAnnotationLink
removeObjectiveAnnotationLink(ObjectiveAnnotationLink, boolean) - Method in class ome.model.acquisition.Objective: removes the given ObjectiveAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkObjective again if loaded.
removeObjectiveAnnotationLinkSet(Collection<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective: use like removeObjectiveAnnotationLink
removeObjectiveSet(Collection<Objective>) - Method in class ome.model.acquisition.Instrument: use like removeObjective
removeOriginalFileAnnotationLink(OriginalFileAnnotationLink) - Method in class ome.model.core.OriginalFile: removes a single element from this set and makes the inverse call on ome.model.annotations.OriginalFileAnnotationLink
removeOriginalFileAnnotationLink(OriginalFileAnnotationLink, boolean) - Method in class ome.model.core.OriginalFile: removes the given OriginalFileAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkOriginalFile again if loaded.
removeOriginalFileAnnotationLinkSet(Collection<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile: use like removeOriginalFileAnnotationLink
removeOTF(OTF) - Method in class ome.model.acquisition.Instrument: removes a single element from this set and makes the inverse call on ome.model.acquisition.OTF
removeOTFSet(Collection<OTF>) - Method in class ome.model.acquisition.Instrument: use like removeOTF
removePassword(Long) - Method in class ome.util.actions.PostgresSqlAction
removePassword(Long) - Method in interface ome.util.SqlAction
removePixels(Pixels) - Method in class ome.model.core.Image: removes a single element from this set and makes the inverse call on ome.model.core.Pixels
removePixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.OriginalFile: removes a single element from this set and makes the inverse call on ome.model.core.PixelsOriginalFileMap
removePixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.Pixels: removes a single element from this set and makes the inverse call on ome.model.core.PixelsOriginalFileMap
removePixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.OriginalFile: removes the given PixelsOriginalFileMap from pixelsFileMaps, allowing for recursion -- whether or not the removal will call unlinkOriginalFile again if loaded.
removePixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.Pixels: removes the given PixelsOriginalFileMap from pixelsFileMaps, allowing for recursion -- whether or not the removal will call unlinkPixels again if loaded.
removePixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile: use like removePixelsOriginalFileMap
removePixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels: use like removePixelsOriginalFileMap
removePixelsSet(Collection<Pixels>) - Method in class ome.model.core.Image: use like removePixels
removePlaneInfo(PlaneInfo) - Method in class ome.model.core.Pixels: removes a single element from this set and makes the inverse call on ome.model.core.PlaneInfo
removePlaneInfoAnnotationLink(PlaneInfoAnnotationLink) - Method in class ome.model.core.PlaneInfo: removes a single element from this set and makes the inverse call on ome.model.annotations.PlaneInfoAnnotationLink
removePlaneInfoAnnotationLink(PlaneInfoAnnotationLink, boolean) - Method in class ome.model.core.PlaneInfo: removes the given PlaneInfoAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlaneInfo again if loaded.
removePlaneInfoAnnotationLinkSet(Collection<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo: use like removePlaneInfoAnnotationLink
removePlaneInfoSet(Collection<PlaneInfo>) - Method in class ome.model.core.Pixels: use like removePlaneInfo
removePlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.Plate: removes a single element from this set and makes the inverse call on ome.model.screen.PlateAcquisition
removePlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink) - Method in class ome.model.screen.PlateAcquisition: removes a single element from this set and makes the inverse call on ome.model.annotations.PlateAcquisitionAnnotationLink
removePlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink, boolean) - Method in class ome.model.screen.PlateAcquisition: removes the given PlateAcquisitionAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlateAcquisition again if loaded.
removePlateAcquisitionAnnotationLinkSet(Collection<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition: use like removePlateAcquisitionAnnotationLink
removePlateAcquisitionSet(Collection<PlateAcquisition>) - Method in class ome.model.screen.Plate: use like removePlateAcquisition
removePlateAnnotationLink(PlateAnnotationLink) - Method in class ome.model.screen.Plate: removes a single element from this set and makes the inverse call on ome.model.annotations.PlateAnnotationLink
removePlateAnnotationLink(PlateAnnotationLink, boolean) - Method in class ome.model.screen.Plate: removes the given PlateAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.
removePlateAnnotationLinkSet(Collection<PlateAnnotationLink>) - Method in class ome.model.screen.Plate: use like removePlateAnnotationLink
removeProjectAnnotationLink(ProjectAnnotationLink) - Method in class ome.model.containers.Project: removes a single element from this set and makes the inverse call on ome.model.annotations.ProjectAnnotationLink
removeProjectAnnotationLink(ProjectAnnotationLink, boolean) - Method in class ome.model.containers.Project: removes the given ProjectAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkProject again if loaded.
removeProjectAnnotationLinkSet(Collection<ProjectAnnotationLink>) - Method in class ome.model.containers.Project: use like removeProjectAnnotationLink
removeProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Dataset: removes a single element from this set and makes the inverse call on ome.model.containers.ProjectDatasetLink
removeProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Project: removes a single element from this set and makes the inverse call on ome.model.containers.ProjectDatasetLink
removeProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Dataset: removes the given ProjectDatasetLink from projectLinks, allowing for recursion -- whether or not the removal will call unlinkDataset again if loaded.
removeProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Project: removes the given ProjectDatasetLink from datasetLinks, allowing for recursion -- whether or not the removal will call unlinkProject again if loaded.
removeProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset: use like removeProjectDatasetLink
removeProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Project: use like removeProjectDatasetLink
removeProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef: removes a single element from this set and makes the inverse call on ome.model.display.ProjectionDef
removeProjectionDefSet(Collection<ProjectionDef>) - Method in class ome.model.display.RenderingDef: use like removeProjectionDef
removeReagent(Reagent) - Method in class ome.model.screen.Screen: removes a single element from this set and makes the inverse call on ome.model.screen.Reagent
removeReagentAnnotationLink(ReagentAnnotationLink) - Method in class ome.model.screen.Reagent: removes a single element from this set and makes the inverse call on ome.model.annotations.ReagentAnnotationLink
removeReagentAnnotationLink(ReagentAnnotationLink, boolean) - Method in class ome.model.screen.Reagent: removes the given ReagentAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkReagent again if loaded.
removeReagentAnnotationLinkSet(Collection<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent: use like removeReagentAnnotationLink
removeReagentSet(Collection<Reagent>) - Method in class ome.model.screen.Screen: use like removeReagent
removeRenderingDef(RenderingDef) - Method in class ome.model.core.Pixels: removes a single element from this set and makes the inverse call on ome.model.display.RenderingDef
removeRenderingDefSet(Collection<RenderingDef>) - Method in class ome.model.core.Pixels: use like removeRenderingDef
removeRoi(Roi) - Method in class ome.model.core.Image: removes a single element from this set and makes the inverse call on ome.model.roi.Roi
removeRoiAnnotationLink(RoiAnnotationLink) - Method in class ome.model.roi.Roi: removes a single element from this set and makes the inverse call on ome.model.annotations.RoiAnnotationLink
removeRoiAnnotationLink(RoiAnnotationLink, boolean) - Method in class ome.model.roi.Roi: removes the given RoiAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkRoi again if loaded.
removeRoiAnnotationLinkSet(Collection<RoiAnnotationLink>) - Method in class ome.model.roi.Roi: use like removeRoiAnnotationLink
removeRoiSet(Collection<Roi>) - Method in class ome.model.core.Image: use like removeRoi
removeScreenAnnotationLink(ScreenAnnotationLink) - Method in class ome.model.screen.Screen: removes a single element from this set and makes the inverse call on ome.model.annotations.ScreenAnnotationLink
removeScreenAnnotationLink(ScreenAnnotationLink, boolean) - Method in class ome.model.screen.Screen: removes the given ScreenAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkScreen again if loaded.
removeScreenAnnotationLinkSet(Collection<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen: use like removeScreenAnnotationLink
removeScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Plate: removes a single element from this set and makes the inverse call on ome.model.screen.ScreenPlateLink
removeScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Screen: removes a single element from this set and makes the inverse call on ome.model.screen.ScreenPlateLink
removeScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Plate: removes the given ScreenPlateLink from screenLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.
removeScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Screen: removes the given ScreenPlateLink from plateLinks, allowing for recursion -- whether or not the removal will call unlinkScreen again if loaded.
removeScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Plate: use like removeScreenPlateLink
removeScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Screen: use like removeScreenPlateLink
removeSession(Session) - Method in class ome.model.meta.Node: removes a single element from this set and makes the inverse call on ome.model.meta.Session
removeSessionAnnotationLink(SessionAnnotationLink) - Method in class ome.model.meta.Session: removes a single element from this set and makes the inverse call on ome.model.annotations.SessionAnnotationLink
removeSessionAnnotationLink(SessionAnnotationLink, boolean) - Method in class ome.model.meta.Session: removes the given SessionAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkSession again if loaded.
removeSessionAnnotationLinkSet(Collection<SessionAnnotationLink>) - Method in class ome.model.meta.Session: use like removeSessionAnnotationLink
removeSessionSet(Collection<Session>) - Method in class ome.model.meta.Node: use like removeSession
removeShape(Shape) - Method in class ome.model.roi.Roi: removes a single element from this set and makes the inverse call on ome.model.roi.Shape
removeShapeAnnotationLink(ShapeAnnotationLink) - Method in class ome.model.roi.Shape: removes a single element from this set and makes the inverse call on ome.model.annotations.ShapeAnnotationLink
removeShapeAnnotationLink(ShapeAnnotationLink, boolean) - Method in class ome.model.roi.Shape: removes the given ShapeAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkShape again if loaded.
removeShapeAnnotationLinkSet(Collection<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape: use like removeShapeAnnotationLink
removeShapeSet(Collection<Shape>) - Method in class ome.model.roi.Roi: use like removeShape
removeThumbnail(Thumbnail) - Method in class ome.model.core.Pixels: removes a single element from this set and makes the inverse call on ome.model.display.Thumbnail
removeThumbnailSet(Collection<Thumbnail>) - Method in class ome.model.core.Pixels: use like removeThumbnail
removeWell(Well) - Method in class ome.model.screen.Plate: removes a single element from this set and makes the inverse call on ome.model.screen.Well
removeWellAnnotationLink(WellAnnotationLink) - Method in class ome.model.screen.Well: removes a single element from this set and makes the inverse call on ome.model.annotations.WellAnnotationLink
removeWellAnnotationLink(WellAnnotationLink, boolean) - Method in class ome.model.screen.Well: removes the given WellAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkWell again if loaded.
removeWellAnnotationLinkSet(Collection<WellAnnotationLink>) - Method in class ome.model.screen.Well: use like removeWellAnnotationLink
removeWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Reagent: removes a single element from this set and makes the inverse call on ome.model.screen.WellReagentLink
removeWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Well: removes a single element from this set and makes the inverse call on ome.model.screen.WellReagentLink
removeWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Reagent: removes the given WellReagentLink from wellLinks, allowing for recursion -- whether or not the removal will call unlinkReagent again if loaded.
removeWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Well: removes the given WellReagentLink from reagentLinks, allowing for recursion -- whether or not the removal will call unlinkWell again if loaded.
removeWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Reagent: use like removeWellReagentLink
removeWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Well: use like removeWellReagentLink
removeWellSample(WellSample) - Method in class ome.model.core.Image: removes a single element from this set and makes the inverse call on ome.model.screen.WellSample
removeWellSample(WellSample) - Method in class ome.model.screen.PlateAcquisition: removes a single element from this set and makes the inverse call on ome.model.screen.WellSample
removeWellSample(WellSample) - Method in class ome.model.screen.Well: removes a single element from this set and makes the inverse call on ome.model.screen.WellSample
removeWellSampleSet(Collection<WellSample>) - Method in class ome.model.core.Image: use like removeWellSample
removeWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.PlateAcquisition: use like removeWellSample
removeWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.Well: use like removeWellSample
removeWellSet(Collection<Well>) - Method in class ome.model.screen.Plate: use like removeWell
renderingDef - Variable in class ome.model.display.ChannelBinding
renderingDef - Variable in class ome.model.display.ProjectionDef
RenderingDef - Class in ome.model.display: These filter definitions are used by the security system to eliminate non-readable objects from queries.
RenderingDef() - Constructor for class ome.model.display.RenderingDef
RenderingDef(Long) - Constructor for class ome.model.display.RenderingDef
RenderingDef(Long, boolean) - Constructor for class ome.model.display.RenderingDef: Main constructor.
RenderingDef(Pixels, Integer, Integer, RenderingModel, QuantumDef) - Constructor for class ome.model.display.RenderingDef
RENDERINGDEF - Static variable in class ome.model.display.ChannelBinding
RENDERINGDEF - Static variable in class ome.model.display.ProjectionDef
RenderingDef.Details - Class in ome.model.display
RenderingModel - Class in ome.model.enums
RenderingModel() - Constructor for class ome.model.enums.RenderingModel
RenderingModel(Long) - Constructor for class ome.model.enums.RenderingModel
RenderingModel(Long, boolean) - Constructor for class ome.model.enums.RenderingModel: Main constructor.
RenderingModel(String) - Constructor for class ome.model.enums.RenderingModel
RenderingModel.Details - Class in ome.model.enums
repetitionRate - Variable in class ome.model.acquisition.Laser
REPETITIONRATE - Static variable in class ome.model.acquisition.Laser
replace(Object, Object, Object) - Method in class ome.model.units.GenericEnumType
repo - Variable in class ome.model.core.OriginalFile
repo - Variable in class ome.util.SqlAction.DeleteLog
REPO - Static variable in class ome.model.core.OriginalFile
repoFile(long) - Method in class ome.util.actions.PostgresSqlAction
repoFile(long) - Method in interface ome.util.SqlAction
repoScriptCount(String, Set<String>) - Method in class ome.util.SqlAction.Impl
repoScriptCount(String, Set<String>) - Method in interface ome.util.SqlAction
reset() - Method in class ome.util.Counter: Reset this counter to zero.
ResourceError - Exception in ome.conditions: Represents a incorrectible/unforseeable event within the server that lead to a failure of a process.
ResourceError(String) - Constructor for exception ome.conditions.ResourceError
result - Variable in exception ome.model.units.BigResult
retrieve(String) - Method in class ome.model.acquisition.Arc
retrieve(String) - Method in class ome.model.acquisition.Detector
retrieve(String) - Method in class ome.model.acquisition.DetectorSettings
retrieve(String) - Method in class ome.model.acquisition.Dichroic
retrieve(String) - Method in class ome.model.acquisition.Filament
retrieve(String) - Method in class ome.model.acquisition.Filter
retrieve(String) - Method in class ome.model.acquisition.FilterSet
retrieve(String) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
retrieve(String) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
retrieve(String) - Method in class ome.model.acquisition.GenericExcitationSource
retrieve(String) - Method in class ome.model.acquisition.ImagingEnvironment
retrieve(String) - Method in class ome.model.acquisition.Instrument
retrieve(String) - Method in class ome.model.acquisition.Laser
retrieve(String) - Method in class ome.model.acquisition.LightEmittingDiode
retrieve(String) - Method in class ome.model.acquisition.LightPath
retrieve(String) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
retrieve(String) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
retrieve(String) - Method in class ome.model.acquisition.LightSettings
retrieve(String) - Method in class ome.model.acquisition.LightSource
retrieve(String) - Method in class ome.model.acquisition.Microscope
retrieve(String) - Method in class ome.model.acquisition.Objective
retrieve(String) - Method in class ome.model.acquisition.ObjectiveSettings
retrieve(String) - Method in class ome.model.acquisition.OTF
retrieve(String) - Method in class ome.model.acquisition.StageLabel
retrieve(String) - Method in class ome.model.acquisition.TransmittanceRange
retrieve(String) - Method in class ome.model.annotations.Annotation
retrieve(String) - Method in class ome.model.annotations.AnnotationAnnotationLink
retrieve(String) - Method in class ome.model.annotations.BasicAnnotation
retrieve(String) - Method in class ome.model.annotations.BooleanAnnotation
retrieve(String) - Method in class ome.model.annotations.ChannelAnnotationLink
retrieve(String) - Method in class ome.model.annotations.CommentAnnotation
retrieve(String) - Method in class ome.model.annotations.DatasetAnnotationLink
retrieve(String) - Method in class ome.model.annotations.DetectorAnnotationLink
retrieve(String) - Method in class ome.model.annotations.DichroicAnnotationLink
retrieve(String) - Method in class ome.model.annotations.DoubleAnnotation
retrieve(String) - Method in class ome.model.annotations.ExperimenterAnnotationLink
retrieve(String) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
retrieve(String) - Method in class ome.model.annotations.FileAnnotation
retrieve(String) - Method in class ome.model.annotations.FilesetAnnotationLink
retrieve(String) - Method in class ome.model.annotations.FilterAnnotationLink
retrieve(String) - Method in class ome.model.annotations.FolderAnnotationLink
retrieve(String) - Method in class ome.model.annotations.ImageAnnotationLink
retrieve(String) - Method in class ome.model.annotations.InstrumentAnnotationLink
retrieve(String) - Method in class ome.model.annotations.LightPathAnnotationLink
retrieve(String) - Method in class ome.model.annotations.LightSourceAnnotationLink
retrieve(String) - Method in class ome.model.annotations.ListAnnotation
retrieve(String) - Method in class ome.model.annotations.LongAnnotation
retrieve(String) - Method in class ome.model.annotations.MapAnnotation
retrieve(String) - Method in class ome.model.annotations.NamespaceAnnotationLink
retrieve(String) - Method in class ome.model.annotations.NodeAnnotationLink
retrieve(String) - Method in class ome.model.annotations.NumericAnnotation
retrieve(String) - Method in class ome.model.annotations.ObjectiveAnnotationLink
retrieve(String) - Method in class ome.model.annotations.OriginalFileAnnotationLink
retrieve(String) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
retrieve(String) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
retrieve(String) - Method in class ome.model.annotations.PlateAnnotationLink
retrieve(String) - Method in class ome.model.annotations.ProjectAnnotationLink
retrieve(String) - Method in class ome.model.annotations.ReagentAnnotationLink
retrieve(String) - Method in class ome.model.annotations.RoiAnnotationLink
retrieve(String) - Method in class ome.model.annotations.ScreenAnnotationLink
retrieve(String) - Method in class ome.model.annotations.SessionAnnotationLink
retrieve(String) - Method in class ome.model.annotations.ShapeAnnotationLink
retrieve(String) - Method in class ome.model.annotations.TagAnnotation
retrieve(String) - Method in class ome.model.annotations.TermAnnotation
retrieve(String) - Method in class ome.model.annotations.TextAnnotation
retrieve(String) - Method in class ome.model.annotations.TimestampAnnotation
retrieve(String) - Method in class ome.model.annotations.TypeAnnotation
retrieve(String) - Method in class ome.model.annotations.WellAnnotationLink
retrieve(String) - Method in class ome.model.annotations.XmlAnnotation
retrieve(String) - Method in class ome.model.containers.Dataset
retrieve(String) - Method in class ome.model.containers.DatasetImageLink
retrieve(String) - Method in class ome.model.containers.Folder
retrieve(String) - Method in class ome.model.containers.FolderImageLink
retrieve(String) - Method in class ome.model.containers.FolderRoiLink
retrieve(String) - Method in class ome.model.containers.Project
retrieve(String) - Method in class ome.model.containers.ProjectDatasetLink
retrieve(String) - Method in class ome.model.core.Channel
retrieve(String) - Method in class ome.model.core.Image
retrieve(String) - Method in class ome.model.core.LogicalChannel
retrieve(String) - Method in class ome.model.core.OriginalFile
retrieve(String) - Method in class ome.model.core.Pixels
retrieve(String) - Method in class ome.model.core.PixelsOriginalFileMap
retrieve(String) - Method in class ome.model.core.PlaneInfo
retrieve(String) - Method in class ome.model.display.ChannelBinding
retrieve(String) - Method in class ome.model.display.CodomainMapContext
retrieve(String) - Method in class ome.model.display.ContrastStretchingContext
retrieve(String) - Method in class ome.model.display.PlaneSlicingContext
retrieve(String) - Method in class ome.model.display.ProjectionDef
retrieve(String) - Method in class ome.model.display.QuantumDef
retrieve(String) - Method in class ome.model.display.RenderingDef
retrieve(String) - Method in class ome.model.display.ReverseIntensityContext
retrieve(String) - Method in class ome.model.display.Thumbnail
retrieve(String) - Method in class ome.model.enums.AcquisitionMode
retrieve(String) - Method in class ome.model.enums.AdminPrivilege
retrieve(String) - Method in class ome.model.enums.ArcType
retrieve(String) - Method in class ome.model.enums.Binning
retrieve(String) - Method in class ome.model.enums.ChecksumAlgorithm
retrieve(String) - Method in class ome.model.enums.ContrastMethod
retrieve(String) - Method in class ome.model.enums.Correction
retrieve(String) - Method in class ome.model.enums.DetectorType
retrieve(String) - Method in class ome.model.enums.DimensionOrder
retrieve(String) - Method in class ome.model.enums.EventType
retrieve(String) - Method in class ome.model.enums.ExperimentType
retrieve(String) - Method in class ome.model.enums.Family
retrieve(String) - Method in class ome.model.enums.FilamentType
retrieve(String) - Method in class ome.model.enums.FilterType
retrieve(String) - Method in class ome.model.enums.Format
retrieve(String) - Method in class ome.model.enums.Illumination
retrieve(String) - Method in class ome.model.enums.Immersion
retrieve(String) - Method in class ome.model.enums.LaserMedium
retrieve(String) - Method in class ome.model.enums.LaserType
retrieve(String) - Method in class ome.model.enums.Medium
retrieve(String) - Method in class ome.model.enums.MicrobeamManipulationType
retrieve(String) - Method in class ome.model.enums.MicroscopeType
retrieve(String) - Method in class ome.model.enums.PhotometricInterpretation
retrieve(String) - Method in class ome.model.enums.PixelsType
retrieve(String) - Method in class ome.model.enums.ProjectionAxis
retrieve(String) - Method in class ome.model.enums.ProjectionType
retrieve(String) - Method in class ome.model.enums.Pulse
retrieve(String) - Method in class ome.model.enums.RenderingModel
retrieve(String) - Method in class ome.model.experiment.Experiment
retrieve(String) - Method in class ome.model.experiment.MicrobeamManipulation
retrieve(String) - Method in class ome.model.fs.Fileset
retrieve(String) - Method in class ome.model.fs.FilesetEntry
retrieve(String) - Method in class ome.model.fs.FilesetJobLink
retrieve(String) - Method in class ome.model.internal.Details
retrieve(String) - Method in class ome.model.internal.Link
retrieve(String) - Method in interface ome.model.IObject: retrieves a value from this instance.
retrieve(String) - Method in class ome.model.jobs.ImportJob: Deprecated.
retrieve(String) - Method in class ome.model.jobs.IndexingJob
retrieve(String) - Method in class ome.model.jobs.IntegrityCheckJob
retrieve(String) - Method in class ome.model.jobs.Job
retrieve(String) - Method in class ome.model.jobs.JobOriginalFileLink
retrieve(String) - Method in class ome.model.jobs.JobStatus
retrieve(String) - Method in class ome.model.jobs.MetadataImportJob
retrieve(String) - Method in class ome.model.jobs.ParseJob
retrieve(String) - Method in class ome.model.jobs.PixelDataJob
retrieve(String) - Method in class ome.model.jobs.ScriptJob
retrieve(String) - Method in class ome.model.jobs.ThumbnailGenerationJob
retrieve(String) - Method in class ome.model.jobs.UploadJob
retrieve(String) - Method in class ome.model.meta.DBPatch
retrieve(String) - Method in class ome.model.meta.Event
retrieve(String) - Method in class ome.model.meta.EventLog
retrieve(String) - Method in class ome.model.meta.Experimenter
retrieve(String) - Method in class ome.model.meta.ExperimenterGroup
retrieve(String) - Method in class ome.model.meta.ExternalInfo
retrieve(String) - Method in class ome.model.meta.GroupExperimenterMap
retrieve(String) - Method in class ome.model.meta.Namespace
retrieve(String) - Method in class ome.model.meta.Node
retrieve(String) - Method in class ome.model.meta.Session
retrieve(String) - Method in class ome.model.meta.Share
retrieve(String) - Method in class ome.model.meta.ShareMember
retrieve(String) - Method in class ome.model.roi.AffineTransform
retrieve(String) - Method in class ome.model.roi.Ellipse
retrieve(String) - Method in class ome.model.roi.Label
retrieve(String) - Method in class ome.model.roi.Line
retrieve(String) - Method in class ome.model.roi.Mask
retrieve(String) - Method in class ome.model.roi.Path: Deprecated.
retrieve(String) - Method in class ome.model.roi.Point
retrieve(String) - Method in class ome.model.roi.Polygon
retrieve(String) - Method in class ome.model.roi.Polyline
retrieve(String) - Method in class ome.model.roi.Rectangle
retrieve(String) - Method in class ome.model.roi.Roi
retrieve(String) - Method in class ome.model.roi.Shape
retrieve(String) - Method in class ome.model.screen.Plate
retrieve(String) - Method in class ome.model.screen.PlateAcquisition
retrieve(String) - Method in class ome.model.screen.Reagent
retrieve(String) - Method in class ome.model.screen.Screen
retrieve(String) - Method in class ome.model.screen.ScreenPlateLink
retrieve(String) - Method in class ome.model.screen.Well
retrieve(String) - Method in class ome.model.screen.WellReagentLink
retrieve(String) - Method in class ome.model.screen.WellSample
retrieve(String) - Method in class ome.model.stats.StatsInfo
retrieve(String) - Method in class ome.util.PermDetails
returnedClass() - Method in class ome.model.units.GenericEnumType
reverse - Variable in class ome.model.display.ReverseIntensityContext
reverse(Collection) - Method in interface ome.util.ReverseModelMapper
reverse(ModelBased) - Method in interface ome.util.ReverseModelMapper
REVERSE - Static variable in class ome.model.display.ReverseIntensityContext
ReverseIntensityContext - Class in ome.model.display
ReverseIntensityContext() - Constructor for class ome.model.display.ReverseIntensityContext
ReverseIntensityContext(Boolean) - Constructor for class ome.model.display.ReverseIntensityContext
ReverseIntensityContext(Long) - Constructor for class ome.model.display.ReverseIntensityContext
ReverseIntensityContext(Long, boolean) - Constructor for class ome.model.display.ReverseIntensityContext: Main constructor.
ReverseModelMapper - Interface in ome.util
revoke(Permissions.Role, Permissions.Right...) - Method in class ome.model.internal.Permissions: turns off the rights for the given role.
revokeAll(Permissions) - Method in class ome.model.internal.Permissions: takes a permissions instance and ANDs it with the current instance.
rewriteHql(String, String, Object) - Method in class ome.util.actions.PostgresSqlAction: The temp_ids infrastructure was never properly put in place for the "psql" profile.
rewriteHql(String, String, Object) - Method in class ome.util.SqlAction.Impl
rewriteHql(String, String, Object) - Method in interface ome.util.SqlAction: Allows the specific database implementations a chance to modify queries.
roi - Variable in class ome.model.roi.Shape
Roi - Class in ome.model.roi: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Roi() - Constructor for class ome.model.roi.Roi
Roi(Long) - Constructor for class ome.model.roi.Roi
Roi(Long, boolean) - Constructor for class ome.model.roi.Roi: Main constructor.
ROI - Static variable in class ome.model.roi.Shape
Roi.Details - Class in ome.model.roi
RoiAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
RoiAnnotationLink() - Constructor for class ome.model.annotations.RoiAnnotationLink
RoiAnnotationLink(Long) - Constructor for class ome.model.annotations.RoiAnnotationLink
RoiAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.RoiAnnotationLink: Main constructor.
RoiAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.RoiAnnotationLink
RoiAnnotationLink.Details - Class in ome.model.annotations
roiByImage(long) - Method in class ome.util.actions.PostgresSqlAction
roiByImage(long) - Method in interface ome.util.SqlAction
roiLinks - Variable in class ome.model.containers.Folder
ROILINKS - Static variable in class ome.model.containers.Folder
ROILINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder
rois - Variable in class ome.model.core.Image
ROIS - Static variable in class ome.model.core.Image
rollbackSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction
rollbackSavepoint(String) - Method in interface ome.util.SqlAction
RootException - Exception in ome.conditions: abstract superclass of all Omero exceptions.
RootException(String) - Constructor for exception ome.conditions.RootException
row - Variable in class ome.model.screen.Well
ROW - Static variable in class ome.model.screen.Well
rowNamingConvention - Variable in class ome.model.screen.Plate
ROWNAMINGCONVENTION - Static variable in class ome.model.screen.Plate
rows - Variable in class ome.model.screen.Plate
ROWS - Static variable in class ome.model.screen.Plate

S

sameRights(Permissions) - Method in class ome.model.internal.Permissions: returns true if two Permissions instances have all the same Permissions.Right / Permissions.Role pairs granted.
samplesPerPixel - Variable in class ome.model.core.LogicalChannel
SAMPLESPERPIXEL - Static variable in class ome.model.core.LogicalChannel
scale - Variable in class ome.model.meta.Node
SCALE - Static variable in class ome.model.meta.Node
scheduledFor - Variable in class ome.model.jobs.Job
SCHEDULEDFOR - Static variable in class ome.model.jobs.Job
screen - Variable in class ome.model.screen.Reagent
Screen - Class in ome.model.screen: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Screen() - Constructor for class ome.model.screen.Screen
Screen(Long) - Constructor for class ome.model.screen.Screen
Screen(Long, boolean) - Constructor for class ome.model.screen.Screen: Main constructor.
Screen(String) - Constructor for class ome.model.screen.Screen
SCREEN - Static variable in class ome.model.screen.Reagent
Screen.Details - Class in ome.model.screen
ScreenAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ScreenAnnotationLink() - Constructor for class ome.model.annotations.ScreenAnnotationLink
ScreenAnnotationLink(Long) - Constructor for class ome.model.annotations.ScreenAnnotationLink
ScreenAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ScreenAnnotationLink: Main constructor.
ScreenAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ScreenAnnotationLink
ScreenAnnotationLink.Details - Class in ome.model.annotations
screenLinks - Variable in class ome.model.screen.Plate
SCREENLINKS - Static variable in class ome.model.screen.Plate
SCREENLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Plate
ScreenPlateLink - Class in ome.model.screen: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ScreenPlateLink() - Constructor for class ome.model.screen.ScreenPlateLink
ScreenPlateLink(Long) - Constructor for class ome.model.screen.ScreenPlateLink
ScreenPlateLink(Long, boolean) - Constructor for class ome.model.screen.ScreenPlateLink: Main constructor.
ScreenPlateLink(IObject, IObject) - Constructor for class ome.model.screen.ScreenPlateLink
ScreenPlateLink.Details - Class in ome.model.screen
ScriptJob - Class in ome.model.jobs
ScriptJob() - Constructor for class ome.model.jobs.ScriptJob
ScriptJob(Long) - Constructor for class ome.model.jobs.ScriptJob
ScriptJob(Long, boolean) - Constructor for class ome.model.jobs.ScriptJob: Main constructor.
scriptRepo(long, Set<String>) - Method in class ome.util.SqlAction.Impl
scriptRepo(long, Set<String>) - Method in interface ome.util.SqlAction: Similar to SqlAction.fileRepo(long), but only returns values for files which are also scripts.
SECOND - ome.model.enums.UnitsTime
seconds - Variable in exception ome.conditions.LockTimeout: Informational field on number of seconds that the lock was tried for.
SecurityViolation - Exception in ome.conditions: User does not have permissions to perform given action.
SecurityViolation(String) - Constructor for exception ome.conditions.SecurityViolation
selectCurrentEventLog(String) - Method in class ome.util.actions.PostgresSqlAction
selectCurrentEventLog(String) - Method in class ome.util.SqlAction.Impl
selectCurrentEventLog(String) - Method in interface ome.util.SqlAction
serialNumber - Variable in class ome.model.acquisition.Detector
serialNumber - Variable in class ome.model.acquisition.Dichroic
serialNumber - Variable in class ome.model.acquisition.Filter
serialNumber - Variable in class ome.model.acquisition.FilterSet
serialNumber - Variable in class ome.model.acquisition.LightSource
serialNumber - Variable in class ome.model.acquisition.Microscope
serialNumber - Variable in class ome.model.acquisition.Objective
SERIALNUMBER - Static variable in class ome.model.acquisition.Detector
SERIALNUMBER - Static variable in class ome.model.acquisition.Dichroic
SERIALNUMBER - Static variable in class ome.model.acquisition.Filter
SERIALNUMBER - Static variable in class ome.model.acquisition.FilterSet
SERIALNUMBER - Static variable in class ome.model.acquisition.LightSource
SERIALNUMBER - Static variable in class ome.model.acquisition.Microscope
SERIALNUMBER - Static variable in class ome.model.acquisition.Objective
series - Variable in class ome.model.core.Image
SERIES - Static variable in class ome.model.core.Image
session - Variable in class ome.model.meta.Event
Session - Class in ome.model.meta
Session() - Constructor for class ome.model.meta.Session
Session(Long) - Constructor for class ome.model.meta.Session
Session(Long, boolean) - Constructor for class ome.model.meta.Session: Main constructor.
Session(Node, String, Experimenter, Long, Long, Timestamp, String) - Constructor for class ome.model.meta.Session
SESSION - Static variable in class ome.model.meta.Event
Session.Details - Class in ome.model.meta
SessionAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
SessionAnnotationLink() - Constructor for class ome.model.annotations.SessionAnnotationLink
SessionAnnotationLink(Long) - Constructor for class ome.model.annotations.SessionAnnotationLink
SessionAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.SessionAnnotationLink: Main constructor.
SessionAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.SessionAnnotationLink
SessionAnnotationLink.Details - Class in ome.model.annotations
sessionContext - Variable in exception ome.conditions.SessionTimeoutException
SessionException - Exception in ome.conditions: Base session related exception.
SessionException(String) - Constructor for exception ome.conditions.SessionException
sessionId(String) - Method in class ome.util.actions.PostgresSqlAction
sessionId(String) - Method in interface ome.util.SqlAction
sessions - Variable in class ome.model.meta.Node
SESSIONS - Static variable in class ome.model.meta.Node
SessionTimeoutException - Exception in ome.conditions: The given session has expired and can no longer be used.
SessionTimeoutException(String, Object) - Constructor for exception ome.conditions.SessionTimeoutException
set(String, Object, Document, LuceneOptions) - Method in class ome.util.DetailsFieldBridge
set(Permissions.Flag) - Method in class ome.model.internal.Permissions: turn a given Permissions.Flag on.
setA00(Double) - Method in class ome.model.roi.AffineTransform
setA01(Double) - Method in class ome.model.roi.AffineTransform
setA02(Double) - Method in class ome.model.roi.AffineTransform
setA10(Double) - Method in class ome.model.roi.AffineTransform
setA11(Double) - Method in class ome.model.roi.AffineTransform
setA12(Double) - Method in class ome.model.roi.AffineTransform
setAcquisitionDate(Timestamp) - Method in class ome.model.core.Image
setAction(String) - Method in class ome.model.meta.EventLog
setActive(Boolean) - Method in class ome.model.display.ChannelBinding
setActive(Boolean) - Method in class ome.model.display.ProjectionDef
setActive(Boolean) - Method in class ome.model.meta.Share
setAirPressure(Pressure) - Method in class ome.model.acquisition.ImagingEnvironment
setAlpha(Integer) - Method in class ome.model.core.Channel
setAlpha(Integer) - Method in class ome.model.display.ChannelBinding
setAlpha(Integer) - Method in class ome.model.screen.Well
setAmplificationGain(Double) - Method in class ome.model.acquisition.Detector
setAnnotationLinks(Set<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ChannelAnnotationLink>) - Method in class ome.model.core.Channel: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<FolderAnnotationLink>) - Method in class ome.model.containers.Folder: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ImageAnnotationLink>) - Method in class ome.model.core.Image: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<NodeAnnotationLink>) - Method in class ome.model.meta.Node: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<PlateAnnotationLink>) - Method in class ome.model.screen.Plate: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ProjectAnnotationLink>) - Method in class ome.model.containers.Project: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<RoiAnnotationLink>) - Method in class ome.model.roi.Roi: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<SessionAnnotationLink>) - Method in class ome.model.meta.Session: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape: setter for annotationLinks should be avoided.
setAnnotationLinks(Set<WellAnnotationLink>) - Method in class ome.model.screen.Well: setter for annotationLinks should be avoided.
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Detector
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Dichroic
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Filter
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Instrument
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightPath
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightSource
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Objective
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.annotations.Annotation
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Dataset
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Folder
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Project
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Channel
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Image
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.OriginalFile
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.PlaneInfo
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.fs.Fileset
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Experimenter
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.ExperimenterGroup
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Namespace
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Node
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Session
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.roi.Roi
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.roi.Shape
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Plate
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.PlateAcquisition
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Reagent
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Screen
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Well
setArchived(Boolean) - Method in class ome.model.core.Image
setAtime(Timestamp) - Method in class ome.model.core.OriginalFile
setAttenuation(Double) - Method in class ome.model.acquisition.LightSettings
setAxis(ProjectionAxis) - Method in class ome.model.display.ProjectionDef
setBinning(Binning) - Method in class ome.model.acquisition.DetectorSettings
setBitResolution(Integer) - Method in class ome.model.display.QuantumDef
setBitSize(Integer) - Method in class ome.model.enums.PixelsType
setBlue(Integer) - Method in class ome.model.core.Channel
setBlue(Integer) - Method in class ome.model.display.ChannelBinding
setBlue(Integer) - Method in class ome.model.screen.Well
setBoolValue(Boolean) - Method in class ome.model.annotations.BooleanAnnotation
setBytes(byte[]) - Method in class ome.model.roi.Mask
setCalibratedMagnification(Double) - Method in class ome.model.acquisition.Objective
setCdEnd(Integer) - Method in class ome.model.display.QuantumDef
setCdStart(Integer) - Method in class ome.model.display.QuantumDef
setChannel(int, Channel) - Method in class ome.model.core.Pixels: Sets the ome.model.core.Channel at the given index.
setChannelBinding(int, ChannelBinding) - Method in class ome.model.display.RenderingDef: Sets the ome.model.display.ChannelBinding at the given index.
setChannelBinding(ChannelBinding) - Method in class ome.model.display.CodomainMapContext
setChannels(List<Channel>) - Method in class ome.model.core.Pixels: setter for channels should be avoided.
setChannels(Set<Channel>) - Method in class ome.model.core.LogicalChannel: setter for channels should be avoided.
setChild(IObject) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
setChild(IObject) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
setChild(IObject) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
setChild(IObject) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
setChild(IObject) - Method in class ome.model.annotations.AnnotationAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.ChannelAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.DatasetAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.DetectorAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.DichroicAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.ExperimenterAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.FilesetAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.FilterAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.FolderAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.ImageAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.InstrumentAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.LightPathAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.LightSourceAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.NamespaceAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.NodeAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.ObjectiveAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.OriginalFileAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.PlateAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.ProjectAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.ReagentAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.RoiAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.ScreenAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.SessionAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.ShapeAnnotationLink
setChild(IObject) - Method in class ome.model.annotations.WellAnnotationLink
setChild(IObject) - Method in class ome.model.containers.DatasetImageLink
setChild(IObject) - Method in class ome.model.containers.FolderImageLink
setChild(IObject) - Method in class ome.model.containers.FolderRoiLink
setChild(IObject) - Method in class ome.model.containers.ProjectDatasetLink
setChild(IObject) - Method in class ome.model.core.PixelsOriginalFileMap
setChild(IObject) - Method in class ome.model.fs.FilesetJobLink
setChild(IObject) - Method in interface ome.model.ILink
setChild(IObject) - Method in class ome.model.jobs.JobOriginalFileLink
setChild(IObject) - Method in class ome.model.meta.GroupExperimenterMap
setChild(IObject) - Method in class ome.model.meta.ShareMember
setChild(IObject) - Method in class ome.model.screen.ScreenPlateLink
setChild(IObject) - Method in class ome.model.screen.WellReagentLink
setChildFolders(Set<Folder>) - Method in class ome.model.containers.Folder: setter for childFolders should be avoided.
setClientPath(String) - Method in class ome.model.fs.FilesetEntry
setClosed(Timestamp) - Method in class ome.model.meta.Session
setCo2percent(Double) - Method in class ome.model.acquisition.ImagingEnvironment
setCodomainMapContext(int, CodomainMapContext) - Method in class ome.model.display.ChannelBinding: Sets the ome.model.display.CodomainMapContext at the given index.
setCoefficient(Double) - Method in class ome.model.display.ChannelBinding
setColumn(Integer) - Method in class ome.model.screen.Well
setColumnNamingConvention(String) - Method in class ome.model.screen.Plate
setColumns(Integer) - Method in class ome.model.screen.Plate
setCompression(Double) - Method in class ome.model.display.RenderingDef
setConfig(List<NamedValue>) - Method in class ome.model.meta.Experimenter
setConfig(List<NamedValue>) - Method in class ome.model.meta.ExperimenterGroup
setConn(String) - Method in class ome.model.meta.Node
setConstant(Boolean) - Method in class ome.model.display.PlaneSlicingContext
setContainingEvent(Event) - Method in class ome.model.meta.Event
setContext(IObject) - Method in class ome.model.internal.Details: set entity to which this Details belongs.
setContexts(Object[]) - Method in class ome.model.internal.Details
setContrastMethod(ContrastMethod) - Method in class ome.model.core.LogicalChannel
setCorrection(Correction) - Method in class ome.model.acquisition.Objective
setCorrectionCollar(Double) - Method in class ome.model.acquisition.ObjectiveSettings
setCreationEvent(Event) - Method in interface ome.model.IDetails
setCreationEvent(Event) - Method in class ome.model.internal.Details
setCtime(Timestamp) - Method in class ome.model.core.OriginalFile
setCurrentEventLog(long, String) - Method in class ome.util.actions.PostgresSqlAction
setCurrentEventLog(long, String) - Method in class ome.util.SqlAction.Impl
setCurrentEventLog(long, String) - Method in interface ome.util.SqlAction
setCurrentPatch(Integer) - Method in class ome.model.meta.DBPatch
setCurrentVersion(String) - Method in class ome.model.meta.DBPatch
setCutIn(Length) - Method in class ome.model.acquisition.TransmittanceRange
setCutInTolerance(Length) - Method in class ome.model.acquisition.TransmittanceRange
setCutOut(Length) - Method in class ome.model.acquisition.TransmittanceRange
setCutOutTolerance(Length) - Method in class ome.model.acquisition.TransmittanceRange
setD(String) - Method in class ome.model.roi.Path: Deprecated.
setData(byte[]) - Method in class ome.model.meta.Share
setDatasetLinks(Set<DatasetImageLink>) - Method in class ome.model.core.Image: setter for datasetLinks should be avoided.
setDatasetLinks(Set<ProjectDatasetLink>) - Method in class ome.model.containers.Project: setter for datasetLinks should be avoided.
setDatasetLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Project
setDatasetLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Image
setDefaultEventType(String) - Method in class ome.model.meta.Session
setDefaultSample(Integer) - Method in class ome.model.screen.Plate
setDefaultT(Integer) - Method in class ome.model.display.RenderingDef
setDefaultZ(Integer) - Method in class ome.model.display.RenderingDef
setDeltaT(Time) - Method in class ome.model.core.PlaneInfo
setDescription(String) - Method in class ome.model.annotations.Annotation
setDescription(String) - Method in class ome.model.containers.Dataset
setDescription(String) - Method in class ome.model.containers.Folder
setDescription(String) - Method in class ome.model.containers.Project
setDescription(String) - Method in class ome.model.core.Image
setDescription(String) - Method in class ome.model.experiment.Experiment
setDescription(String) - Method in class ome.model.experiment.MicrobeamManipulation
setDescription(String) - Method in class ome.model.jobs.ScriptJob
setDescription(String) - Method in class ome.model.meta.ExperimenterGroup
setDescription(String) - Method in class ome.model.meta.Namespace
setDescription(String) - Method in class ome.model.roi.Roi
setDescription(String) - Method in class ome.model.screen.Plate
setDescription(String) - Method in class ome.model.screen.PlateAcquisition
setDescription(String) - Method in class ome.model.screen.Reagent
setDescription(String) - Method in class ome.model.screen.Screen
setDetails(Details) - Method in class ome.model.acquisition.Detector
setDetails(Details) - Method in class ome.model.acquisition.DetectorSettings
setDetails(Details) - Method in class ome.model.acquisition.Dichroic
setDetails(Details) - Method in class ome.model.acquisition.Filter
setDetails(Details) - Method in class ome.model.acquisition.FilterSet
setDetails(Details) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
setDetails(Details) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
setDetails(Details) - Method in class ome.model.acquisition.ImagingEnvironment
setDetails(Details) - Method in class ome.model.acquisition.Instrument
setDetails(Details) - Method in class ome.model.acquisition.LightPath
setDetails(Details) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
setDetails(Details) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
setDetails(Details) - Method in class ome.model.acquisition.LightSettings
setDetails(Details) - Method in class ome.model.acquisition.LightSource
setDetails(Details) - Method in class ome.model.acquisition.Microscope
setDetails(Details) - Method in class ome.model.acquisition.Objective
setDetails(Details) - Method in class ome.model.acquisition.ObjectiveSettings
setDetails(Details) - Method in class ome.model.acquisition.OTF
setDetails(Details) - Method in class ome.model.acquisition.StageLabel
setDetails(Details) - Method in class ome.model.acquisition.TransmittanceRange
setDetails(Details) - Method in class ome.model.annotations.Annotation
setDetails(Details) - Method in class ome.model.annotations.AnnotationAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.ChannelAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.DatasetAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.DetectorAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.DichroicAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.ExperimenterAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.FilesetAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.FilterAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.FolderAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.ImageAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.InstrumentAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.LightPathAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.LightSourceAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.NamespaceAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.NodeAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.ObjectiveAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.OriginalFileAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.PlateAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.ProjectAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.ReagentAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.RoiAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.ScreenAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.SessionAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.ShapeAnnotationLink
setDetails(Details) - Method in class ome.model.annotations.WellAnnotationLink
setDetails(Details) - Method in class ome.model.containers.Dataset
setDetails(Details) - Method in class ome.model.containers.DatasetImageLink
setDetails(Details) - Method in class ome.model.containers.Folder
setDetails(Details) - Method in class ome.model.containers.FolderImageLink
setDetails(Details) - Method in class ome.model.containers.FolderRoiLink
setDetails(Details) - Method in class ome.model.containers.Project
setDetails(Details) - Method in class ome.model.containers.ProjectDatasetLink
setDetails(Details) - Method in class ome.model.core.Channel
setDetails(Details) - Method in class ome.model.core.Image
setDetails(Details) - Method in class ome.model.core.LogicalChannel
setDetails(Details) - Method in class ome.model.core.OriginalFile
setDetails(Details) - Method in class ome.model.core.Pixels
setDetails(Details) - Method in class ome.model.core.PixelsOriginalFileMap
setDetails(Details) - Method in class ome.model.core.PlaneInfo
setDetails(Details) - Method in class ome.model.display.ChannelBinding
setDetails(Details) - Method in class ome.model.display.CodomainMapContext
setDetails(Details) - Method in class ome.model.display.ProjectionDef
setDetails(Details) - Method in class ome.model.display.QuantumDef
setDetails(Details) - Method in class ome.model.display.RenderingDef
setDetails(Details) - Method in class ome.model.display.Thumbnail
setDetails(Details) - Method in class ome.model.enums.AcquisitionMode
setDetails(Details) - Method in class ome.model.enums.AdminPrivilege
setDetails(Details) - Method in class ome.model.enums.ArcType
setDetails(Details) - Method in class ome.model.enums.Binning
setDetails(Details) - Method in class ome.model.enums.ChecksumAlgorithm
setDetails(Details) - Method in class ome.model.enums.ContrastMethod
setDetails(Details) - Method in class ome.model.enums.Correction
setDetails(Details) - Method in class ome.model.enums.DetectorType
setDetails(Details) - Method in class ome.model.enums.DimensionOrder
setDetails(Details) - Method in class ome.model.enums.EventType
setDetails(Details) - Method in class ome.model.enums.ExperimentType
setDetails(Details) - Method in class ome.model.enums.Family
setDetails(Details) - Method in class ome.model.enums.FilamentType
setDetails(Details) - Method in class ome.model.enums.FilterType
setDetails(Details) - Method in class ome.model.enums.Format
setDetails(Details) - Method in class ome.model.enums.Illumination
setDetails(Details) - Method in class ome.model.enums.Immersion
setDetails(Details) - Method in class ome.model.enums.LaserMedium
setDetails(Details) - Method in class ome.model.enums.LaserType
setDetails(Details) - Method in class ome.model.enums.Medium
setDetails(Details) - Method in class ome.model.enums.MicrobeamManipulationType
setDetails(Details) - Method in class ome.model.enums.MicroscopeType
setDetails(Details) - Method in class ome.model.enums.PhotometricInterpretation
setDetails(Details) - Method in class ome.model.enums.PixelsType
setDetails(Details) - Method in class ome.model.enums.ProjectionAxis
setDetails(Details) - Method in class ome.model.enums.ProjectionType
setDetails(Details) - Method in class ome.model.enums.Pulse
setDetails(Details) - Method in class ome.model.enums.RenderingModel
setDetails(Details) - Method in class ome.model.experiment.Experiment
setDetails(Details) - Method in class ome.model.experiment.MicrobeamManipulation
setDetails(Details) - Method in class ome.model.fs.Fileset
setDetails(Details) - Method in class ome.model.fs.FilesetEntry
setDetails(Details) - Method in class ome.model.fs.FilesetJobLink
setDetails(Details) - Method in class ome.model.internal.Link
setDetails(Details) - Method in class ome.model.jobs.Job
setDetails(Details) - Method in class ome.model.jobs.JobOriginalFileLink
setDetails(Details) - Method in class ome.model.jobs.JobStatus
setDetails(Details) - Method in class ome.model.meta.DBPatch
setDetails(Details) - Method in class ome.model.meta.Event
setDetails(Details) - Method in class ome.model.meta.EventLog
setDetails(Details) - Method in class ome.model.meta.Experimenter
setDetails(Details) - Method in class ome.model.meta.ExperimenterGroup
setDetails(Details) - Method in class ome.model.meta.ExternalInfo
setDetails(Details) - Method in class ome.model.meta.GroupExperimenterMap
setDetails(Details) - Method in class ome.model.meta.Namespace
setDetails(Details) - Method in class ome.model.meta.Node
setDetails(Details) - Method in class ome.model.meta.Session
setDetails(Details) - Method in class ome.model.meta.ShareMember
setDetails(Details) - Method in class ome.model.roi.AffineTransform
setDetails(Details) - Method in class ome.model.roi.Roi
setDetails(Details) - Method in class ome.model.roi.Shape
setDetails(Details) - Method in class ome.model.screen.Plate
setDetails(Details) - Method in class ome.model.screen.PlateAcquisition
setDetails(Details) - Method in class ome.model.screen.Reagent
setDetails(Details) - Method in class ome.model.screen.Screen
setDetails(Details) - Method in class ome.model.screen.ScreenPlateLink
setDetails(Details) - Method in class ome.model.screen.Well
setDetails(Details) - Method in class ome.model.screen.WellReagentLink
setDetails(Details) - Method in class ome.model.screen.WellSample
setDetails(Details) - Method in class ome.model.stats.StatsInfo
setDetector(Set<Detector>) - Method in class ome.model.acquisition.Instrument: setter for detector should be avoided.
setDetector(Detector) - Method in class ome.model.acquisition.DetectorSettings
setDetectorSettings(DetectorSettings) - Method in class ome.model.core.LogicalChannel
setDichroic(Set<Dichroic>) - Method in class ome.model.acquisition.Instrument: setter for dichroic should be avoided.
setDichroic(Dichroic) - Method in class ome.model.acquisition.FilterSet
setDichroic(Dichroic) - Method in class ome.model.acquisition.LightPath
setDimensionOrder(DimensionOrder) - Method in class ome.model.core.Pixels
setDisallow(boolean[], int, boolean) - Static method in class ome.model.internal.Permissions: Deprecated.
setDisallow(int, boolean) - Method in class ome.model.internal.Permissions
setDisallowAnnotate(boolean) - Method in class ome.model.internal.Permissions
setDisallowChgrp(boolean) - Method in class ome.model.internal.Permissions
setDisallowChown(boolean) - Method in class ome.model.internal.Permissions
setDisallowDelete(boolean) - Method in class ome.model.internal.Permissions
setDisallowEdit(boolean) - Method in class ome.model.internal.Permissions
setDisallowLink(boolean) - Method in class ome.model.internal.Permissions
setDisplay(Boolean) - Method in class ome.model.meta.Namespace
setDisplayName(String) - Method in class ome.model.meta.Namespace
setDoubleValue(Double) - Method in class ome.model.annotations.DoubleAnnotation
setDown(Timestamp) - Method in class ome.model.meta.Node
setEmail(String) - Method in class ome.model.meta.Experimenter
setEmissionFilterLink(Set<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter: setter for emissionFilterLink should be avoided.
setEmissionFilterLink(Set<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet: setter for emissionFilterLink should be avoided.
setEmissionFilterLink(Set<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath: setter for emissionFilterLink should be avoided.
setEmissionFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Filter
setEmissionFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.FilterSet
setEmissionFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightPath
setEmissionWave(Length) - Method in class ome.model.core.LogicalChannel
setEndPlane(Integer) - Method in class ome.model.display.ProjectionDef
setEndTime(Timestamp) - Method in class ome.model.screen.PlateAcquisition
setEntityId(Long) - Method in class ome.model.meta.EventLog
setEntityId(Long) - Method in class ome.model.meta.ExternalInfo
setEntityType(String) - Method in class ome.model.meta.EventLog
setEntityType(String) - Method in class ome.model.meta.ExternalInfo
setEvent(Event) - Method in class ome.model.meta.EventLog
setEvents(Set<Event>) - Method in class ome.model.meta.Session: setter for events should be avoided.
setExcitationFilterLink(List<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath: setter for excitationFilterLink should be avoided.
setExcitationFilterLink(Set<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter: setter for excitationFilterLink should be avoided.
setExcitationFilterLink(Set<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet: setter for excitationFilterLink should be avoided.
setExcitationFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Filter
setExcitationFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.FilterSet
setExcitationFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightPath
setExcitationWave(Length) - Method in class ome.model.core.LogicalChannel
setExperiment(Experiment) - Method in class ome.model.core.Image
setExperiment(Experiment) - Method in class ome.model.experiment.MicrobeamManipulation
setExperimenter(Experimenter) - Method in class ome.model.meta.Event
setExperimenterGroup(ExperimenterGroup) - Method in class ome.model.meta.Event
setExposureTime(Time) - Method in class ome.model.core.PlaneInfo
setExternalDescription(String) - Method in class ome.model.screen.Well
setExternalIdentifier(String) - Method in class ome.model.screen.Plate
setExternalIdentifier(String) - Method in class ome.model.screen.Well
setExternalInfo(ExternalInfo) - Method in class ome.model.internal.Details
setFamily(Family) - Method in class ome.model.display.ChannelBinding
setFieldBridge(FieldBridge) - Static method in class ome.util.DetailsFieldBridge
setFile(OriginalFile) - Method in class ome.model.annotations.FileAnnotation
setFileRepo(Collection<Long>, String) - Method in class ome.util.actions.PostgresSqlAction
setFileRepo(Collection<Long>, String) - Method in interface ome.util.SqlAction
setFileset(Fileset) - Method in class ome.model.core.Image
setFileset(Fileset) - Method in class ome.model.fs.FilesetEntry
setFilesetEntries(Set<FilesetEntry>) - Method in class ome.model.core.OriginalFile: setter for filesetEntries should be avoided.
setFilesetEntry(int, FilesetEntry) - Method in class ome.model.fs.Fileset: Sets the ome.model.fs.FilesetEntry at the given index.
setFilesetJobLink(int, FilesetJobLink) - Method in class ome.model.fs.Fileset: Sets the ome.model.fs.FilesetJobLink at the given index.
setFillColor(Integer) - Method in class ome.model.roi.Shape
setFillRule(String) - Method in class ome.model.roi.Shape
setFilter(Set<Filter>) - Method in class ome.model.acquisition.Instrument: setter for filter should be avoided.
setFilter(Filter) - Method in class ome.parameters.Parameters
setFilter(PrivilegedStringTypeDescriptor.Filter, Function<Long, Boolean>) - Static method in class ome.util.PrivilegedStringTypeDescriptor: Set the filter implementation for a value of PrivilegedStringTypeDescriptor.Filter.
setFilterSet(Set<FilterSet>) - Method in class ome.model.acquisition.Instrument: setter for filterSet should be avoided.
setFilterSet(FilterSet) - Method in class ome.model.acquisition.OTF
setFilterSet(FilterSet) - Method in class ome.model.core.LogicalChannel
setFilterWheel(String) - Method in class ome.model.acquisition.Filter
setFinished(Timestamp) - Method in class ome.model.jobs.Job
setFinished(Timestamp) - Method in class ome.model.meta.DBPatch
setFirstName(String) - Method in class ome.model.meta.Experimenter
setFluor(String) - Method in class ome.model.core.LogicalChannel
setFolderLinks(Set<FolderImageLink>) - Method in class ome.model.core.Image: setter for folderLinks should be avoided.
setFolderLinks(Set<FolderRoiLink>) - Method in class ome.model.roi.Roi: setter for folderLinks should be avoided.
setFolderLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Image
setFolderLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.roi.Roi
setFontFamily(String) - Method in class ome.model.roi.Shape
setFontSize(Length) - Method in class ome.model.roi.Shape
setFontStyle(String) - Method in class ome.model.roi.Shape
setFormat(Format) - Method in class ome.model.core.Image
setFrequencyMultiplication(Integer) - Method in class ome.model.acquisition.Laser
setGain(Double) - Method in class ome.model.acquisition.Detector
setGain(Double) - Method in class ome.model.acquisition.DetectorSettings
setGlobalMax(Double) - Method in class ome.model.stats.StatsInfo
setGlobalMin(Double) - Method in class ome.model.stats.StatsInfo
setGreen(Integer) - Method in class ome.model.core.Channel
setGreen(Integer) - Method in class ome.model.display.ChannelBinding
setGreen(Integer) - Method in class ome.model.screen.Well
setGroup(ExperimenterGroup) - Method in class ome.model.internal.Details
setGroup(ExperimenterGroup) - Method in class ome.model.meta.Share
setGroupExperimenterMap(int, GroupExperimenterMap) - Method in class ome.model.meta.Experimenter: Sets the ome.model.meta.GroupExperimenterMap at the given index.
setGroupExperimenterMap(List<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter: setter for groupExperimenterMap should be avoided.
setGroupExperimenterMap(Set<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup: setter for groupExperimenterMap should be avoided.
setGroupname(String) - Method in class ome.model.jobs.Job
setHash(String) - Method in class ome.model.core.OriginalFile
setHasher(ChecksumAlgorithm) - Method in class ome.model.core.OriginalFile
setHeight(Double) - Method in class ome.model.roi.Mask
setHeight(Double) - Method in class ome.model.roi.Rectangle
setHumidity(Double) - Method in class ome.model.acquisition.ImagingEnvironment
setId(Long) - Method in class ome.model.acquisition.Detector
setId(Long) - Method in class ome.model.acquisition.DetectorSettings
setId(Long) - Method in class ome.model.acquisition.Dichroic
setId(Long) - Method in class ome.model.acquisition.Filter
setId(Long) - Method in class ome.model.acquisition.FilterSet
setId(Long) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
setId(Long) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
setId(Long) - Method in class ome.model.acquisition.ImagingEnvironment
setId(Long) - Method in class ome.model.acquisition.Instrument
setId(Long) - Method in class ome.model.acquisition.LightPath
setId(Long) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
setId(Long) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
setId(Long) - Method in class ome.model.acquisition.LightSettings
setId(Long) - Method in class ome.model.acquisition.LightSource
setId(Long) - Method in class ome.model.acquisition.Microscope
setId(Long) - Method in class ome.model.acquisition.Objective
setId(Long) - Method in class ome.model.acquisition.ObjectiveSettings
setId(Long) - Method in class ome.model.acquisition.OTF
setId(Long) - Method in class ome.model.acquisition.StageLabel
setId(Long) - Method in class ome.model.acquisition.TransmittanceRange
setId(Long) - Method in class ome.model.annotations.Annotation
setId(Long) - Method in class ome.model.annotations.AnnotationAnnotationLink
setId(Long) - Method in class ome.model.annotations.ChannelAnnotationLink
setId(Long) - Method in class ome.model.annotations.DatasetAnnotationLink
setId(Long) - Method in class ome.model.annotations.DetectorAnnotationLink
setId(Long) - Method in class ome.model.annotations.DichroicAnnotationLink
setId(Long) - Method in class ome.model.annotations.ExperimenterAnnotationLink
setId(Long) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
setId(Long) - Method in class ome.model.annotations.FilesetAnnotationLink
setId(Long) - Method in class ome.model.annotations.FilterAnnotationLink
setId(Long) - Method in class ome.model.annotations.FolderAnnotationLink
setId(Long) - Method in class ome.model.annotations.ImageAnnotationLink
setId(Long) - Method in class ome.model.annotations.InstrumentAnnotationLink
setId(Long) - Method in class ome.model.annotations.LightPathAnnotationLink
setId(Long) - Method in class ome.model.annotations.LightSourceAnnotationLink
setId(Long) - Method in class ome.model.annotations.NamespaceAnnotationLink
setId(Long) - Method in class ome.model.annotations.NodeAnnotationLink
setId(Long) - Method in class ome.model.annotations.ObjectiveAnnotationLink
setId(Long) - Method in class ome.model.annotations.OriginalFileAnnotationLink
setId(Long) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
setId(Long) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
setId(Long) - Method in class ome.model.annotations.PlateAnnotationLink
setId(Long) - Method in class ome.model.annotations.ProjectAnnotationLink
setId(Long) - Method in class ome.model.annotations.ReagentAnnotationLink
setId(Long) - Method in class ome.model.annotations.RoiAnnotationLink
setId(Long) - Method in class ome.model.annotations.ScreenAnnotationLink
setId(Long) - Method in class ome.model.annotations.SessionAnnotationLink
setId(Long) - Method in class ome.model.annotations.ShapeAnnotationLink
setId(Long) - Method in class ome.model.annotations.WellAnnotationLink
setId(Long) - Method in class ome.model.containers.Dataset
setId(Long) - Method in class ome.model.containers.DatasetImageLink
setId(Long) - Method in class ome.model.containers.Folder
setId(Long) - Method in class ome.model.containers.FolderImageLink
setId(Long) - Method in class ome.model.containers.FolderRoiLink
setId(Long) - Method in class ome.model.containers.Project
setId(Long) - Method in class ome.model.containers.ProjectDatasetLink
setId(Long) - Method in class ome.model.core.Channel
setId(Long) - Method in class ome.model.core.Image
setId(Long) - Method in class ome.model.core.LogicalChannel
setId(Long) - Method in class ome.model.core.OriginalFile
setId(Long) - Method in class ome.model.core.Pixels
setId(Long) - Method in class ome.model.core.PixelsOriginalFileMap
setId(Long) - Method in class ome.model.core.PlaneInfo
setId(Long) - Method in class ome.model.display.ChannelBinding
setId(Long) - Method in class ome.model.display.CodomainMapContext
setId(Long) - Method in class ome.model.display.ProjectionDef
setId(Long) - Method in class ome.model.display.QuantumDef
setId(Long) - Method in class ome.model.display.RenderingDef
setId(Long) - Method in class ome.model.display.Thumbnail
setId(Long) - Method in class ome.model.enums.AcquisitionMode
setId(Long) - Method in class ome.model.enums.AdminPrivilege
setId(Long) - Method in class ome.model.enums.ArcType
setId(Long) - Method in class ome.model.enums.Binning
setId(Long) - Method in class ome.model.enums.ChecksumAlgorithm
setId(Long) - Method in class ome.model.enums.ContrastMethod
setId(Long) - Method in class ome.model.enums.Correction
setId(Long) - Method in class ome.model.enums.DetectorType
setId(Long) - Method in class ome.model.enums.DimensionOrder
setId(Long) - Method in class ome.model.enums.EventType
setId(Long) - Method in class ome.model.enums.ExperimentType
setId(Long) - Method in class ome.model.enums.Family
setId(Long) - Method in class ome.model.enums.FilamentType
setId(Long) - Method in class ome.model.enums.FilterType
setId(Long) - Method in class ome.model.enums.Format
setId(Long) - Method in class ome.model.enums.Illumination
setId(Long) - Method in class ome.model.enums.Immersion
setId(Long) - Method in class ome.model.enums.LaserMedium
setId(Long) - Method in class ome.model.enums.LaserType
setId(Long) - Method in class ome.model.enums.Medium
setId(Long) - Method in class ome.model.enums.MicrobeamManipulationType
setId(Long) - Method in class ome.model.enums.MicroscopeType
setId(Long) - Method in class ome.model.enums.PhotometricInterpretation
setId(Long) - Method in class ome.model.enums.PixelsType
setId(Long) - Method in class ome.model.enums.ProjectionAxis
setId(Long) - Method in class ome.model.enums.ProjectionType
setId(Long) - Method in class ome.model.enums.Pulse
setId(Long) - Method in class ome.model.enums.RenderingModel
setId(Long) - Method in class ome.model.experiment.Experiment
setId(Long) - Method in class ome.model.experiment.MicrobeamManipulation
setId(Long) - Method in class ome.model.fs.Fileset
setId(Long) - Method in class ome.model.fs.FilesetEntry
setId(Long) - Method in class ome.model.fs.FilesetJobLink
setId(Long) - Method in class ome.model.internal.Link
setId(Long) - Method in interface ome.model.IObject: usually unneeded.
setId(Long) - Method in class ome.model.jobs.Job
setId(Long) - Method in class ome.model.jobs.JobOriginalFileLink
setId(Long) - Method in class ome.model.jobs.JobStatus
setId(Long) - Method in class ome.model.meta.DBPatch
setId(Long) - Method in class ome.model.meta.Event
setId(Long) - Method in class ome.model.meta.EventLog
setId(Long) - Method in class ome.model.meta.Experimenter
setId(Long) - Method in class ome.model.meta.ExperimenterGroup
setId(Long) - Method in class ome.model.meta.ExternalInfo
setId(Long) - Method in class ome.model.meta.GroupExperimenterMap
setId(Long) - Method in class ome.model.meta.Namespace
setId(Long) - Method in class ome.model.meta.Node
setId(Long) - Method in class ome.model.meta.Session
setId(Long) - Method in class ome.model.meta.ShareMember
setId(Long) - Method in class ome.model.roi.AffineTransform
setId(Long) - Method in class ome.model.roi.Roi
setId(Long) - Method in class ome.model.roi.Shape
setId(Long) - Method in class ome.model.screen.Plate
setId(Long) - Method in class ome.model.screen.PlateAcquisition
setId(Long) - Method in class ome.model.screen.Reagent
setId(Long) - Method in class ome.model.screen.Screen
setId(Long) - Method in class ome.model.screen.ScreenPlateLink
setId(Long) - Method in class ome.model.screen.Well
setId(Long) - Method in class ome.model.screen.WellReagentLink
setId(Long) - Method in class ome.model.screen.WellSample
setId(Long) - Method in class ome.model.stats.StatsInfo
setId(Long) - Method in class ome.util.PermDetails
setIllumination(Illumination) - Method in class ome.model.core.LogicalChannel
setImage(Image) - Method in class ome.model.core.Pixels
setImage(Image) - Method in class ome.model.roi.Roi
setImage(Image) - Method in class ome.model.screen.WellSample
setImageDescription(String) - Method in class ome.model.jobs.ImportJob: Deprecated.
setImageLinks(Set<DatasetImageLink>) - Method in class ome.model.containers.Dataset: setter for imageLinks should be avoided.
setImageLinks(Set<FolderImageLink>) - Method in class ome.model.containers.Folder: setter for imageLinks should be avoided.
setImageLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Dataset
setImageLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Folder
setImageName(String) - Method in class ome.model.jobs.ImportJob: Deprecated.
setImages(Set<Image>) - Method in class ome.model.fs.Fileset: setter for images should be avoided.
setImagingEnvironment(ImagingEnvironment) - Method in class ome.model.core.Image
setImmersion(Immersion) - Method in class ome.model.acquisition.Objective
setInputEnd(Double) - Method in class ome.model.display.ChannelBinding
setInputStart(Double) - Method in class ome.model.display.ChannelBinding
setInstitution(String) - Method in class ome.model.meta.Experimenter
setInstrument(Instrument) - Method in class ome.model.acquisition.Detector
setInstrument(Instrument) - Method in class ome.model.acquisition.Dichroic
setInstrument(Instrument) - Method in class ome.model.acquisition.Filter
setInstrument(Instrument) - Method in class ome.model.acquisition.FilterSet
setInstrument(Instrument) - Method in class ome.model.acquisition.LightSource
setInstrument(Instrument) - Method in class ome.model.acquisition.Objective
setInstrument(Instrument) - Method in class ome.model.acquisition.OTF
setInstrument(Instrument) - Method in class ome.model.core.Image
setIntegration(Integer) - Method in class ome.model.acquisition.DetectorSettings
setIris(Boolean) - Method in class ome.model.acquisition.Objective
setItemCount(Long) - Method in class ome.model.meta.Share
setJobLinks(List<FilesetJobLink>) - Method in class ome.model.fs.Fileset: setter for jobLinks should be avoided.
setJobLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.fs.Fileset
setKey(String) - Method in class ome.util.MapPut
setKeywords(List<String>) - Method in class ome.model.meta.Namespace
setLaserMedium(LaserMedium) - Method in class ome.model.acquisition.Laser
setLastName(String) - Method in class ome.model.meta.Experimenter
setLdap(Boolean) - Method in class ome.model.meta.Experimenter
setLdap(Boolean) - Method in class ome.model.meta.ExperimenterGroup
setLensNA(Double) - Method in class ome.model.acquisition.Objective
setLightPath(LightPath) - Method in class ome.model.core.LogicalChannel
setLightPathExcitationFilterLink(int, LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath: Sets the ome.model.acquisition.LightPathExcitationFilterLink at the given index.
setLightSource(Set<LightSource>) - Method in class ome.model.acquisition.Instrument: setter for lightSource should be avoided.
setLightSource(LightSource) - Method in class ome.model.acquisition.LightSettings
setLightSourceSettings(Set<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation: setter for lightSourceSettings should be avoided.
setLightSourceSettings(LightSettings) - Method in class ome.model.core.LogicalChannel
setLocked(Boolean) - Method in class ome.model.roi.Shape
setLogicalChannel(LogicalChannel) - Method in class ome.model.core.Channel
setLogs(Set<EventLog>) - Method in class ome.model.meta.Event: setter for logs should be avoided.
setLongValue(Long) - Method in class ome.model.annotations.LongAnnotation
setLookupTable(String) - Method in class ome.model.core.Channel
setLookupTable(String) - Method in class ome.model.display.ChannelBinding
setLotNumber(String) - Method in class ome.model.acquisition.Detector
setLotNumber(String) - Method in class ome.model.acquisition.Dichroic
setLotNumber(String) - Method in class ome.model.acquisition.Filter
setLotNumber(String) - Method in class ome.model.acquisition.FilterSet
setLotNumber(String) - Method in class ome.model.acquisition.LightSource
setLotNumber(String) - Method in class ome.model.acquisition.Microscope
setLotNumber(String) - Method in class ome.model.acquisition.Objective
setLowerLimit(Integer) - Method in class ome.model.display.PlaneSlicingContext
setLsid(String) - Method in class ome.model.meta.ExternalInfo
setManufacturer(String) - Method in class ome.model.acquisition.Detector
setManufacturer(String) - Method in class ome.model.acquisition.Dichroic
setManufacturer(String) - Method in class ome.model.acquisition.Filter
setManufacturer(String) - Method in class ome.model.acquisition.FilterSet
setManufacturer(String) - Method in class ome.model.acquisition.LightSource
setManufacturer(String) - Method in class ome.model.acquisition.Microscope
setManufacturer(String) - Method in class ome.model.acquisition.Objective
setMap(List<NamedValue>) - Method in class ome.model.acquisition.GenericExcitationSource
setMap(List<NamedValue>) - Method in class ome.model.acquisition.ImagingEnvironment
setMap(Map<String, Object>) - Method in class ome.util.MapPut
setMapValue(List<NamedValue>) - Method in class ome.model.annotations.MapAnnotation
setMarkerEnd(String) - Method in class ome.model.roi.Line
setMarkerEnd(String) - Method in class ome.model.roi.Polyline
setMarkerStart(String) - Method in class ome.model.roi.Line
setMarkerStart(String) - Method in class ome.model.roi.Polyline
setMaximumFieldCount(Integer) - Method in class ome.model.screen.PlateAcquisition
setMedium(Medium) - Method in class ome.model.acquisition.ObjectiveSettings
setMessage(String) - Method in class ome.model.jobs.Job
setMessage(String) - Method in class ome.model.meta.DBPatch
setMessage(String) - Method in class ome.model.meta.Session
setMethodology(String) - Method in class ome.model.core.Pixels
setMicrobeamManipulation(Set<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment: setter for microbeamManipulation should be avoided.
setMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.acquisition.LightSettings
setMicroscope(Microscope) - Method in class ome.model.acquisition.Instrument
setMiddleName(String) - Method in class ome.model.meta.Experimenter
setMimetype(String) - Method in class ome.model.core.OriginalFile
setMimeType(String) - Method in class ome.model.display.Thumbnail
setMode(AcquisitionMode) - Method in class ome.model.core.LogicalChannel
setModel(String) - Method in class ome.model.acquisition.Detector
setModel(String) - Method in class ome.model.acquisition.Dichroic
setModel(String) - Method in class ome.model.acquisition.Filter
setModel(String) - Method in class ome.model.acquisition.FilterSet
setModel(String) - Method in class ome.model.acquisition.LightSource
setModel(String) - Method in class ome.model.acquisition.Microscope
setModel(String) - Method in class ome.model.acquisition.Objective
setModel(RenderingModel) - Method in class ome.model.display.RenderingDef
setMtime(Timestamp) - Method in class ome.model.core.OriginalFile
setMultivalued(Boolean) - Method in class ome.model.meta.Namespace
setName(String) - Method in class ome.model.acquisition.StageLabel
setName(String) - Method in class ome.model.annotations.Annotation
setName(String) - Method in class ome.model.containers.Dataset
setName(String) - Method in class ome.model.containers.Folder
setName(String) - Method in class ome.model.containers.Project
setName(String) - Method in class ome.model.core.Image
setName(String) - Method in class ome.model.core.LogicalChannel
setName(String) - Method in class ome.model.core.OriginalFile
setName(String) - Method in class ome.model.display.RenderingDef
setName(String) - Method in class ome.model.internal.NamedValue
setName(String) - Method in class ome.model.meta.ExperimenterGroup
setName(String) - Method in class ome.model.meta.Namespace
setName(String) - Method in class ome.model.roi.Roi
setName(String) - Method in class ome.model.screen.Plate
setName(String) - Method in class ome.model.screen.PlateAcquisition
setName(String) - Method in class ome.model.screen.Reagent
setName(String) - Method in class ome.model.screen.Screen
setNdFilter(Double) - Method in class ome.model.core.LogicalChannel
setNode(Node) - Method in class ome.model.meta.Session
setNoiseReduction(Boolean) - Method in class ome.model.display.ChannelBinding
setNominalMagnification(Double) - Method in class ome.model.acquisition.Objective
setNs(String) - Method in class ome.model.annotations.Annotation
setObject(Object) - Method in class ome.util.MapPut
setObjective(Set<Objective>) - Method in class ome.model.acquisition.Instrument: setter for objective should be avoided.
setObjective(Objective) - Method in class ome.model.acquisition.ObjectiveSettings
setObjective(Objective) - Method in class ome.model.acquisition.OTF
setObjectiveSettings(ObjectiveSettings) - Method in class ome.model.core.Image
setOffsetValue(Double) - Method in class ome.model.acquisition.Detector
setOffsetValue(Double) - Method in class ome.model.acquisition.DetectorSettings
setOmeName(String) - Method in class ome.model.meta.Experimenter
setOpticalAxisAveraged(Boolean) - Method in class ome.model.acquisition.OTF
setOptions(Options) - Method in class ome.parameters.Parameters
setOrder(ByteOrder) - Method in class ome.util.PixelData: Set the byte order of the backing buffer.
setOriginalFile(OriginalFile) - Method in class ome.model.fs.FilesetEntry
setOriginalFileLinks(Set<JobOriginalFileLink>) - Method in class ome.model.jobs.Job: setter for originalFileLinks should be avoided.
setOriginalFileLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.jobs.Job
setOtf(Set<OTF>) - Method in class ome.model.acquisition.Instrument: setter for otf should be avoided.
setOtf(OTF) - Method in class ome.model.core.LogicalChannel
setOwner(Boolean) - Method in class ome.model.meta.GroupExperimenterMap
setOwner(Experimenter) - Method in interface ome.model.IDetails
setOwner(Experimenter) - Method in class ome.model.internal.Details
setOwner(Experimenter) - Method in class ome.model.meta.Session
setParameterValues(Properties) - Method in class ome.model.units.GenericEnumType
setParams(byte[]) - Method in class ome.model.jobs.ParseJob
setParent(IObject) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
setParent(IObject) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
setParent(IObject) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
setParent(IObject) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
setParent(IObject) - Method in class ome.model.annotations.AnnotationAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.ChannelAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.DatasetAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.DetectorAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.DichroicAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.ExperimenterAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.FilesetAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.FilterAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.FolderAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.ImageAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.InstrumentAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.LightPathAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.LightSourceAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.NamespaceAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.NodeAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.ObjectiveAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.OriginalFileAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.PlateAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.ProjectAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.ReagentAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.RoiAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.ScreenAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.SessionAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.ShapeAnnotationLink
setParent(IObject) - Method in class ome.model.annotations.WellAnnotationLink
setParent(IObject) - Method in class ome.model.containers.DatasetImageLink
setParent(IObject) - Method in class ome.model.containers.FolderImageLink
setParent(IObject) - Method in class ome.model.containers.FolderRoiLink
setParent(IObject) - Method in class ome.model.containers.ProjectDatasetLink
setParent(IObject) - Method in class ome.model.core.PixelsOriginalFileMap
setParent(IObject) - Method in class ome.model.fs.FilesetJobLink
setParent(IObject) - Method in interface ome.model.ILink
setParent(IObject) - Method in class ome.model.jobs.JobOriginalFileLink
setParent(IObject) - Method in class ome.model.meta.GroupExperimenterMap
setParent(IObject) - Method in class ome.model.meta.ShareMember
setParent(IObject) - Method in class ome.model.screen.ScreenPlateLink
setParent(IObject) - Method in class ome.model.screen.WellReagentLink
setParentFolder(Folder) - Method in class ome.model.containers.Folder
setPartial(Boolean) - Method in class ome.model.core.Image
setPath(String) - Method in class ome.model.acquisition.OTF
setPath(String) - Method in class ome.model.core.OriginalFile
setPerm1(long) - Method in class ome.model.internal.Permissions
setPermissions(Permissions) - Method in interface ome.model.IDetails
setPermissions(Permissions) - Method in class ome.model.internal.Details
setPermissionsBit(String, long, int) - Method in class ome.util.SqlAction.Impl
setPermissionsBit(String, long, int) - Method in interface ome.util.SqlAction: Sets the given permissions bit to 1.
setPhotometricInterpretation(PhotometricInterpretation) - Method in class ome.model.core.LogicalChannel
setPhysicalSizeX(Length) - Method in class ome.model.core.Pixels
setPhysicalSizeY(Length) - Method in class ome.model.core.Pixels
setPhysicalSizeZ(Length) - Method in class ome.model.core.Pixels
setPinHoleSize(Length) - Method in class ome.model.core.LogicalChannel
setPixels(int, Pixels) - Method in class ome.model.core.Image: Sets the ome.model.core.Pixels at the given index.
setPixels(List<Pixels>) - Method in class ome.model.core.Image: setter for pixels should be avoided.
setPixels(Pixels) - Method in class ome.model.core.Channel
setPixels(Pixels) - Method in class ome.model.core.PlaneInfo
setPixels(Pixels) - Method in class ome.model.display.RenderingDef
setPixels(Pixels) - Method in class ome.model.display.Thumbnail
setPixels(Pixels) - Method in class ome.model.roi.Mask
setPixelsFileMaps(Set<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile: setter for pixelsFileMaps should be avoided.
setPixelsFileMaps(Set<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels: setter for pixelsFileMaps should be avoided.
setPixelsFileMapsCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.OriginalFile
setPixelsFileMapsCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Pixels
setPixelsNamePathRepo(long, String, String, String) - Method in class ome.util.actions.PostgresSqlAction
setPixelsNamePathRepo(long, String, String, String) - Method in interface ome.util.SqlAction
setPixelsType(PixelsType) - Method in class ome.model.acquisition.OTF
setPixelsType(PixelsType) - Method in class ome.model.core.Pixels
setPixelValue(int, double) - Method in class ome.util.PixelData: Sets the pixel intensity value of the pixel at a given offset within the backing buffer.
setPixelValueDirect(int, double) - Method in class ome.util.PixelData: Sets the pixel intensity value of the pixel at a given offset within the backing buffer.
setPlaneInfo(Set<PlaneInfo>) - Method in class ome.model.core.Pixels: setter for planeInfo should be avoided.
setPlanePrevious(Integer) - Method in class ome.model.display.PlaneSlicingContext
setPlaneSelected(Integer) - Method in class ome.model.display.PlaneSlicingContext
setPlate(Plate) - Method in class ome.model.screen.PlateAcquisition
setPlate(Plate) - Method in class ome.model.screen.Well
setPlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.WellSample
setPlateAcquisitions(Set<PlateAcquisition>) - Method in class ome.model.screen.Plate: setter for plateAcquisitions should be avoided.
setPlateLinks(Set<ScreenPlateLink>) - Method in class ome.model.screen.Screen: setter for plateLinks should be avoided.
setPlateLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Screen
setPockelCell(Boolean) - Method in class ome.model.acquisition.Laser
setPockelCellSetting(Integer) - Method in class ome.model.core.LogicalChannel
setPoints(String) - Method in class ome.model.roi.Polygon
setPoints(String) - Method in class ome.model.roi.Polyline
setPositionX(Length) - Method in class ome.model.acquisition.StageLabel
setPositionX(Length) - Method in class ome.model.core.PlaneInfo
setPositionY(Length) - Method in class ome.model.acquisition.StageLabel
setPositionY(Length) - Method in class ome.model.core.PlaneInfo
setPositionZ(Length) - Method in class ome.model.acquisition.StageLabel
setPositionZ(Length) - Method in class ome.model.core.PlaneInfo
setPosX(Length) - Method in class ome.model.screen.WellSample
setPosY(Length) - Method in class ome.model.screen.WellSample
setPower(Power) - Method in class ome.model.acquisition.LightSource
setPreviousPatch(Integer) - Method in class ome.model.meta.DBPatch
setPreviousVersion(String) - Method in class ome.model.meta.DBPatch
setPrimaryChannel(Channel) - Method in class ome.model.core.Pixels: Swaps the first element of channels with the first instance of the given element.
setPrimaryChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef: Swaps the first element of waveRendering with the first instance of the given element.
setPrimaryCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding: Swaps the first element of spatialDomainEnhancement with the first instance of the given element.
setPrimaryFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset: Swaps the first element of usedFiles with the first instance of the given element.
setPrimaryFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset: Swaps the first element of jobLinks with the first instance of the given element.
setPrimaryGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter: Swaps the first element of groupExperimenterMap with the first instance of the given element.
setPrimaryLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath: Swaps the first element of excitationFilterLink with the first instance of the given element.
setPrimaryPixels(Pixels) - Method in class ome.model.core.Image: Swaps the first element of pixels with the first instance of the given element.
setPrimaryProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef: Swaps the first element of projections with the first instance of the given element.
setPrimaryShape(Shape) - Method in class ome.model.roi.Roi: Swaps the first element of shapes with the first instance of the given element.
setPrimaryWellSample(WellSample) - Method in class ome.model.screen.Well: Swaps the first element of wellSamples with the first instance of the given element.
setProjectionDef(int, ProjectionDef) - Method in class ome.model.display.RenderingDef: Sets the ome.model.display.ProjectionDef at the given index.
setProjections(List<ProjectionDef>) - Method in class ome.model.display.RenderingDef: setter for projections should be avoided.
setProjectLinks(Set<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset: setter for projectLinks should be avoided.
setProjectLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Dataset
setProtocolDescription(String) - Method in class ome.model.screen.Screen
setProtocolIdentifier(String) - Method in class ome.model.screen.Screen
setPulse(Pulse) - Method in class ome.model.acquisition.Laser
setPump(LightSource) - Method in class ome.model.acquisition.Laser
setQuantization(QuantumDef) - Method in class ome.model.display.RenderingDef
setRadiusX(Double) - Method in class ome.model.roi.Ellipse
setRadiusY(Double) - Method in class ome.model.roi.Ellipse
setReadOutRate(Frequency) - Method in class ome.model.acquisition.DetectorSettings
setReagentIdentifier(String) - Method in class ome.model.screen.Reagent
setReagentLinks(Set<WellReagentLink>) - Method in class ome.model.screen.Well: setter for reagentLinks should be avoided.
setReagentLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Well
setReagents(Set<Reagent>) - Method in class ome.model.screen.Screen: setter for reagents should be avoided.
setReagentSetDescription(String) - Method in class ome.model.screen.Screen
setReagentSetIdentifier(String) - Method in class ome.model.screen.Screen
setRed(Integer) - Method in class ome.model.core.Channel
setRed(Integer) - Method in class ome.model.display.ChannelBinding
setRed(Integer) - Method in class ome.model.screen.Well
setRef(String) - Method in class ome.model.display.Thumbnail
setRefractiveIndex(Double) - Method in class ome.model.acquisition.ObjectiveSettings
setRelatedTo(Pixels) - Method in class ome.model.core.Pixels: Deprecated.
setRenderingDef(RenderingDef) - Method in class ome.model.display.ChannelBinding
setRenderingDef(RenderingDef) - Method in class ome.model.display.ProjectionDef
setRepetitionRate(Frequency) - Method in class ome.model.acquisition.Laser
setReplacement(IObject) - Method in class ome.model.internal.GraphHolder: used mostly by ome.api.IUpdate.
setRepo(String) - Method in class ome.model.core.OriginalFile
setReverse(Boolean) - Method in class ome.model.display.ReverseIntensityContext
setRoi(Roi) - Method in class ome.model.roi.Shape
setRoiLinks(Set<FolderRoiLink>) - Method in class ome.model.containers.Folder: setter for roiLinks should be avoided.
setRoiLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Folder
setRois(Set<Roi>) - Method in class ome.model.core.Image: setter for rois should be avoided.
setRoles(long, long, long, long, long) - Method in class ome.util.SqlAction.Impl
setRoles(long, long, long, long, long) - Method in interface ome.util.SqlAction: Note the roles in the database.
setRow(Integer) - Method in class ome.model.screen.Well
setRowNamingConvention(String) - Method in class ome.model.screen.Plate
setRows(Integer) - Method in class ome.model.screen.Plate
setSamplesPerPixel(Integer) - Method in class ome.model.core.LogicalChannel
setScale(Integer) - Method in class ome.model.meta.Node
setScheduledFor(Timestamp) - Method in class ome.model.jobs.Job
setScreen(Screen) - Method in class ome.model.screen.Reagent
setScreenLinks(Set<ScreenPlateLink>) - Method in class ome.model.screen.Plate: setter for screenLinks should be avoided.
setScreenLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Plate
setSerialNumber(String) - Method in class ome.model.acquisition.Detector
setSerialNumber(String) - Method in class ome.model.acquisition.Dichroic
setSerialNumber(String) - Method in class ome.model.acquisition.Filter
setSerialNumber(String) - Method in class ome.model.acquisition.FilterSet
setSerialNumber(String) - Method in class ome.model.acquisition.LightSource
setSerialNumber(String) - Method in class ome.model.acquisition.Microscope
setSerialNumber(String) - Method in class ome.model.acquisition.Objective
setSeries(Integer) - Method in class ome.model.core.Image
setSession(Session) - Method in class ome.model.meta.Event
setSessions(Set<Session>) - Method in class ome.model.meta.Node: setter for sessions should be avoided.
setSettings(Set<RenderingDef>) - Method in class ome.model.core.Pixels: setter for settings should be avoided.
setSha1(String) - Method in class ome.model.core.Pixels
setShape(int, Shape) - Method in class ome.model.roi.Roi: Sets the ome.model.roi.Shape at the given index.
setShapes(List<Shape>) - Method in class ome.model.roi.Roi: setter for shapes should be avoided.
setSignificantBits(Integer) - Method in class ome.model.core.Pixels
setSize(Long) - Method in class ome.model.core.OriginalFile
setSizeC(Integer) - Method in class ome.model.core.Pixels
setSizeT(Integer) - Method in class ome.model.core.Pixels
setSizeX(Integer) - Method in class ome.model.acquisition.OTF
setSizeX(Integer) - Method in class ome.model.core.Pixels
setSizeX(Integer) - Method in class ome.model.display.Thumbnail
setSizeY(Integer) - Method in class ome.model.acquisition.OTF
setSizeY(Integer) - Method in class ome.model.core.Pixels
setSizeY(Integer) - Method in class ome.model.display.Thumbnail
setSizeZ(Integer) - Method in class ome.model.core.Pixels
setSource(OriginalFile) - Method in class ome.model.roi.Roi
setSpatialDomainEnhancement(List<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding: setter for spatialDomainEnhancement should be avoided.
setSqlAction(SqlAction) - Method in class ome.util.TableIdGenerator
setStageLabel(StageLabel) - Method in class ome.model.core.Image
setStarted(Timestamp) - Method in class ome.model.jobs.Job
setStarted(Timestamp) - Method in class ome.model.meta.Session
setStartPlane(Integer) - Method in class ome.model.display.ProjectionDef
setStartTime(Timestamp) - Method in class ome.model.screen.PlateAcquisition
setStatsInfo(Channel, StatsInfo) - Method in class ome.util.SqlAction.Impl
setStatsInfo(Channel, StatsInfo) - Method in interface ome.util.SqlAction
setStatsInfo(StatsInfo) - Method in class ome.model.core.Channel
setStatus(String) - Method in class ome.model.meta.Event
setStatus(String) - Method in class ome.model.screen.Plate
setStatus(String) - Method in class ome.model.screen.Well
setStatus(JobStatus) - Method in class ome.model.jobs.Job
setStepping(Integer) - Method in class ome.model.display.ProjectionDef
setStrokeColor(Integer) - Method in class ome.model.roi.Shape
setStrokeDashArray(String) - Method in class ome.model.roi.Shape
setStrokeWidth(Length) - Method in class ome.model.roi.Shape
setSubmitted(Timestamp) - Method in class ome.model.jobs.Job
setSudoer(Experimenter) - Method in class ome.model.meta.Session
setTemperature(Temperature) - Method in class ome.model.acquisition.ImagingEnvironment
setTemplatePrefix(String) - Method in class ome.model.fs.Fileset
setTermValue(String) - Method in class ome.model.annotations.TermAnnotation
setTextValue(String) - Method in class ome.model.annotations.TextAnnotation
setTextValue(String) - Method in class ome.model.roi.Ellipse
setTextValue(String) - Method in class ome.model.roi.Label
setTextValue(String) - Method in class ome.model.roi.Line
setTextValue(String) - Method in class ome.model.roi.Mask
setTextValue(String) - Method in class ome.model.roi.Path: Deprecated.
setTextValue(String) - Method in class ome.model.roi.Point
setTextValue(String) - Method in class ome.model.roi.Polygon
setTextValue(String) - Method in class ome.model.roi.Polyline
setTextValue(String) - Method in class ome.model.roi.Rectangle
setTheC(Integer) - Method in class ome.model.core.PlaneInfo
setTheC(Integer) - Method in class ome.model.roi.Shape
setTheT(Integer) - Method in class ome.model.core.PlaneInfo
setTheT(Integer) - Method in class ome.model.roi.Shape
setTheZ(Integer) - Method in class ome.model.core.PlaneInfo
setTheZ(Integer) - Method in class ome.model.roi.Shape
setThumbnails(Set<Thumbnail>) - Method in class ome.model.core.Pixels: setter for thumbnails should be avoided.
setTime(Timestamp) - Method in class ome.model.meta.Event
setTimeIncrement(Time) - Method in class ome.model.core.Pixels
setTimepoint(Timestamp) - Method in class ome.model.screen.WellSample
setTimeToIdle(Long) - Method in class ome.model.meta.Session
setTimeToLive(Long) - Method in class ome.model.meta.Session
setTimeValue(Timestamp) - Method in class ome.model.annotations.TimestampAnnotation
settings - Variable in class ome.model.core.Pixels
SETTINGS - Static variable in class ome.model.core.Pixels
setToken(Token, Token) - Method in class ome.model.internal.GraphHolder: set the Token for this GraphHolder but only if you posses the current Token.
setTransform(AffineTransform) - Method in class ome.model.roi.Shape
setTransmittance(Double) - Method in class ome.model.acquisition.TransmittanceRange
setTransmittanceRange(TransmittanceRange) - Method in class ome.model.acquisition.Filter
setTuneable(Boolean) - Method in class ome.model.acquisition.Laser
setType(String) - Method in class ome.model.jobs.Job
setType(String) - Method in class ome.model.screen.Screen
setType(String) - Method in class ome.model.screen.Well
setType(ArcType) - Method in class ome.model.acquisition.Arc
setType(DetectorType) - Method in class ome.model.acquisition.Detector
setType(EventType) - Method in class ome.model.meta.Event
setType(ExperimentType) - Method in class ome.model.experiment.Experiment
setType(FilamentType) - Method in class ome.model.acquisition.Filament
setType(FilterType) - Method in class ome.model.acquisition.Filter
setType(LaserType) - Method in class ome.model.acquisition.Laser
setType(MicrobeamManipulationType) - Method in class ome.model.experiment.MicrobeamManipulation
setType(MicroscopeType) - Method in class ome.model.acquisition.Microscope
setType(ProjectionType) - Method in class ome.model.display.ProjectionDef
setUnit(UnitsElectricPotential) - Method in class ome.model.units.ElectricPotential
setUnit(UnitsFrequency) - Method in class ome.model.units.Frequency
setUnit(UnitsLength) - Method in class ome.model.units.Length
setUnit(UnitsPower) - Method in class ome.model.units.Power
setUnit(UnitsPressure) - Method in class ome.model.units.Pressure
setUnit(UnitsTemperature) - Method in class ome.model.units.Temperature
setUnit(UnitsTime) - Method in class ome.model.units.Time
setUp(Timestamp) - Method in class ome.model.meta.Node
setUpdateEvent(Event) - Method in class ome.model.internal.Details
setUpdateEvent(Event) - Method in class ome.model.meta.ExternalInfo.Details
setUpperLimit(Integer) - Method in class ome.model.display.PlaneSlicingContext
setUsedFiles(List<FilesetEntry>) - Method in class ome.model.fs.Fileset: setter for usedFiles should be avoided.
setUserAgent(String) - Method in class ome.model.meta.Session
setUserIP(String) - Method in class ome.model.meta.Session: Deprecated.
setUsername(String) - Method in class ome.model.jobs.Job
setUserPassword(Long, String) - Method in class ome.util.SqlAction.Impl
setUserPassword(Long, String) - Method in interface ome.util.SqlAction
setUuid(String) - Method in class ome.model.meta.ExternalInfo
setUuid(String) - Method in class ome.model.meta.Node
setUuid(String) - Method in class ome.model.meta.Session
setValue(double) - Method in class ome.model.units.ElectricPotential
setValue(double) - Method in class ome.model.units.Frequency
setValue(double) - Method in class ome.model.units.Length
setValue(double) - Method in class ome.model.units.Power
setValue(double) - Method in class ome.model.units.Pressure
setValue(double) - Method in class ome.model.units.Temperature
setValue(double) - Method in class ome.model.units.Time
setValue(double) - Method in interface ome.model.units.Unit
setValue(String) - Method in class ome.model.enums.AcquisitionMode
setValue(String) - Method in class ome.model.enums.AdminPrivilege
setValue(String) - Method in class ome.model.enums.ArcType
setValue(String) - Method in class ome.model.enums.Binning
setValue(String) - Method in class ome.model.enums.ChecksumAlgorithm
setValue(String) - Method in class ome.model.enums.ContrastMethod
setValue(String) - Method in class ome.model.enums.Correction
setValue(String) - Method in class ome.model.enums.DetectorType
setValue(String) - Method in class ome.model.enums.DimensionOrder
setValue(String) - Method in class ome.model.enums.EventType
setValue(String) - Method in class ome.model.enums.ExperimentType
setValue(String) - Method in class ome.model.enums.Family
setValue(String) - Method in class ome.model.enums.FilamentType
setValue(String) - Method in class ome.model.enums.FilterType
setValue(String) - Method in class ome.model.enums.Format
setValue(String) - Method in class ome.model.enums.Illumination
setValue(String) - Method in class ome.model.enums.Immersion
setValue(String) - Method in class ome.model.enums.LaserMedium
setValue(String) - Method in class ome.model.enums.LaserType
setValue(String) - Method in class ome.model.enums.Medium
setValue(String) - Method in class ome.model.enums.MicrobeamManipulationType
setValue(String) - Method in class ome.model.enums.MicroscopeType
setValue(String) - Method in class ome.model.enums.PhotometricInterpretation
setValue(String) - Method in class ome.model.enums.PixelsType
setValue(String) - Method in class ome.model.enums.ProjectionAxis
setValue(String) - Method in class ome.model.enums.ProjectionType
setValue(String) - Method in class ome.model.enums.Pulse
setValue(String) - Method in class ome.model.enums.RenderingModel
setValue(String) - Method in class ome.model.internal.NamedValue
setValue(String) - Method in class ome.model.jobs.JobStatus
setVersion(Integer) - Method in class ome.model.acquisition.Detector
setVersion(Integer) - Method in class ome.model.acquisition.DetectorSettings
setVersion(Integer) - Method in class ome.model.acquisition.Dichroic
setVersion(Integer) - Method in class ome.model.acquisition.Filter
setVersion(Integer) - Method in class ome.model.acquisition.FilterSet
setVersion(Integer) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
setVersion(Integer) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
setVersion(Integer) - Method in class ome.model.acquisition.ImagingEnvironment
setVersion(Integer) - Method in class ome.model.acquisition.Instrument
setVersion(Integer) - Method in class ome.model.acquisition.LightPath
setVersion(Integer) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
setVersion(Integer) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
setVersion(Integer) - Method in class ome.model.acquisition.LightSettings
setVersion(Integer) - Method in class ome.model.acquisition.LightSource
setVersion(Integer) - Method in class ome.model.acquisition.Microscope
setVersion(Integer) - Method in class ome.model.acquisition.Objective
setVersion(Integer) - Method in class ome.model.acquisition.ObjectiveSettings
setVersion(Integer) - Method in class ome.model.acquisition.OTF
setVersion(Integer) - Method in class ome.model.acquisition.StageLabel
setVersion(Integer) - Method in class ome.model.acquisition.TransmittanceRange
setVersion(Integer) - Method in class ome.model.annotations.Annotation
setVersion(Integer) - Method in class ome.model.annotations.AnnotationAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.ChannelAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.DatasetAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.DetectorAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.DichroicAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.ExperimenterAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.FilesetAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.FilterAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.FolderAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.ImageAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.InstrumentAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.LightPathAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.LightSourceAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.NamespaceAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.NodeAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.ObjectiveAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.OriginalFileAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.PlateAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.ProjectAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.ReagentAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.RoiAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.ScreenAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.SessionAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.ShapeAnnotationLink
setVersion(Integer) - Method in class ome.model.annotations.WellAnnotationLink
setVersion(Integer) - Method in class ome.model.containers.Dataset
setVersion(Integer) - Method in class ome.model.containers.DatasetImageLink
setVersion(Integer) - Method in class ome.model.containers.Folder
setVersion(Integer) - Method in class ome.model.containers.FolderImageLink
setVersion(Integer) - Method in class ome.model.containers.FolderRoiLink
setVersion(Integer) - Method in class ome.model.containers.Project
setVersion(Integer) - Method in class ome.model.containers.ProjectDatasetLink
setVersion(Integer) - Method in class ome.model.core.Channel
setVersion(Integer) - Method in class ome.model.core.Image
setVersion(Integer) - Method in class ome.model.core.LogicalChannel
setVersion(Integer) - Method in class ome.model.core.OriginalFile
setVersion(Integer) - Method in class ome.model.core.Pixels
setVersion(Integer) - Method in class ome.model.core.PixelsOriginalFileMap
setVersion(Integer) - Method in class ome.model.core.PlaneInfo
setVersion(Integer) - Method in class ome.model.display.ChannelBinding
setVersion(Integer) - Method in class ome.model.display.CodomainMapContext
setVersion(Integer) - Method in class ome.model.display.ProjectionDef
setVersion(Integer) - Method in class ome.model.display.QuantumDef
setVersion(Integer) - Method in class ome.model.display.RenderingDef
setVersion(Integer) - Method in class ome.model.display.Thumbnail
setVersion(Integer) - Method in class ome.model.experiment.Experiment
setVersion(Integer) - Method in class ome.model.experiment.MicrobeamManipulation
setVersion(Integer) - Method in class ome.model.fs.Fileset
setVersion(Integer) - Method in class ome.model.fs.FilesetEntry
setVersion(Integer) - Method in class ome.model.fs.FilesetJobLink
setVersion(Integer) - Method in interface ome.model.IMutable: use with caution.
setVersion(Integer) - Method in class ome.model.internal.Link
setVersion(Integer) - Method in class ome.model.jobs.Job
setVersion(Integer) - Method in class ome.model.jobs.JobOriginalFileLink
setVersion(Integer) - Method in class ome.model.meta.Experimenter
setVersion(Integer) - Method in class ome.model.meta.ExperimenterGroup
setVersion(Integer) - Method in class ome.model.meta.GroupExperimenterMap
setVersion(Integer) - Method in class ome.model.meta.Namespace
setVersion(Integer) - Method in class ome.model.meta.Node
setVersion(Integer) - Method in class ome.model.meta.Session
setVersion(Integer) - Method in class ome.model.meta.ShareMember
setVersion(Integer) - Method in class ome.model.roi.AffineTransform
setVersion(Integer) - Method in class ome.model.roi.Roi
setVersion(Integer) - Method in class ome.model.roi.Shape
setVersion(Integer) - Method in class ome.model.screen.Plate
setVersion(Integer) - Method in class ome.model.screen.PlateAcquisition
setVersion(Integer) - Method in class ome.model.screen.Reagent
setVersion(Integer) - Method in class ome.model.screen.Screen
setVersion(Integer) - Method in class ome.model.screen.ScreenPlateLink
setVersion(Integer) - Method in class ome.model.screen.Well
setVersion(Integer) - Method in class ome.model.screen.WellReagentLink
setVersion(Integer) - Method in class ome.model.screen.WellSample
setVersion(Integer) - Method in class ome.model.stats.StatsInfo
setVersionInfo(List<NamedValue>) - Method in class ome.model.jobs.MetadataImportJob
setVersionInfo(List<NamedValue>) - Method in class ome.model.jobs.UploadJob
setVoltage(ElectricPotential) - Method in class ome.model.acquisition.Detector
setVoltage(ElectricPotential) - Method in class ome.model.acquisition.DetectorSettings
setWaveIncrement(Integer) - Method in class ome.model.core.Pixels
setWavelength(Length) - Method in class ome.model.acquisition.Laser
setWavelength(Length) - Method in class ome.model.acquisition.LightSettings
setWaveRendering(List<ChannelBinding>) - Method in class ome.model.display.RenderingDef: setter for waveRendering should be avoided.
setWaveStart(Integer) - Method in class ome.model.core.Pixels
setWell(Well) - Method in class ome.model.screen.WellSample
setWellLinks(Set<WellReagentLink>) - Method in class ome.model.screen.Reagent: setter for wellLinks should be avoided.
setWellLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Reagent
setWellOriginX(Length) - Method in class ome.model.screen.Plate
setWellOriginY(Length) - Method in class ome.model.screen.Plate
setWells(Set<Well>) - Method in class ome.model.screen.Plate: setter for wells should be avoided.
setWellSample(int, WellSample) - Method in class ome.model.screen.Well: Sets the ome.model.screen.WellSample at the given index.
setWellSample(Set<WellSample>) - Method in class ome.model.screen.PlateAcquisition: setter for wellSample should be avoided.
setWellSamples(List<WellSample>) - Method in class ome.model.screen.Well: setter for wellSamples should be avoided.
setWellSamples(Set<WellSample>) - Method in class ome.model.core.Image: setter for wellSamples should be avoided.
setWidth(Double) - Method in class ome.model.roi.Mask
setWidth(Double) - Method in class ome.model.roi.Rectangle
setWorkingDistance(Length) - Method in class ome.model.acquisition.Objective
setX(Double) - Method in class ome.model.roi.Ellipse
setX(Double) - Method in class ome.model.roi.Label
setX(Double) - Method in class ome.model.roi.Mask
setX(Double) - Method in class ome.model.roi.Point
setX(Double) - Method in class ome.model.roi.Rectangle
setX1(Double) - Method in class ome.model.roi.Line
setX2(Double) - Method in class ome.model.roi.Line
setXend(Integer) - Method in class ome.model.display.ContrastStretchingContext
setXstart(Integer) - Method in class ome.model.display.ContrastStretchingContext
setY(Double) - Method in class ome.model.roi.Ellipse
setY(Double) - Method in class ome.model.roi.Label
setY(Double) - Method in class ome.model.roi.Mask
setY(Double) - Method in class ome.model.roi.Point
setY(Double) - Method in class ome.model.roi.Rectangle
setY1(Double) - Method in class ome.model.roi.Line
setY2(Double) - Method in class ome.model.roi.Line
setYend(Integer) - Method in class ome.model.display.ContrastStretchingContext
setYstart(Integer) - Method in class ome.model.display.ContrastStretchingContext
setZoom(Double) - Method in class ome.model.acquisition.Detector
setZoom(Double) - Method in class ome.model.acquisition.DetectorSettings
sha1 - Variable in class ome.model.core.Pixels
SHA1 - Static variable in class ome.model.core.Pixels
shallowCopy() - Method in class ome.model.internal.Details
shallowCopy(Details) - Method in class ome.model.internal.Details: Method which takes all the fields of the given Details instance and sets unloaded proxies of them into the current instance.
ShallowCopy - Class in ome.util
ShallowCopy() - Constructor for class ome.util.ShallowCopy
Shape - Class in ome.model.roi: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Shape() - Constructor for class ome.model.roi.Shape
Shape(Long) - Constructor for class ome.model.roi.Shape
Shape(Long, boolean) - Constructor for class ome.model.roi.Shape: Main constructor.
Shape(Roi) - Constructor for class ome.model.roi.Shape
Shape.Details - Class in ome.model.roi
ShapeAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
ShapeAnnotationLink() - Constructor for class ome.model.annotations.ShapeAnnotationLink
ShapeAnnotationLink(Long) - Constructor for class ome.model.annotations.ShapeAnnotationLink
ShapeAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ShapeAnnotationLink: Main constructor.
ShapeAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ShapeAnnotationLink
ShapeAnnotationLink.Details - Class in ome.model.annotations
shapes - Variable in class ome.model.roi.Roi
SHAPES - Static variable in class ome.model.roi.Roi
Share - Class in ome.model.meta
Share() - Constructor for class ome.model.meta.Share
Share(Long) - Constructor for class ome.model.meta.Share
Share(Long, boolean) - Constructor for class ome.model.meta.Share: Main constructor.
Share(ExperimenterGroup, Long, Boolean, byte[]) - Constructor for class ome.model.meta.Share
ShareMember - Class in ome.model.meta
ShareMember() - Constructor for class ome.model.meta.ShareMember
ShareMember(Long) - Constructor for class ome.model.meta.ShareMember
ShareMember(Long, boolean) - Constructor for class ome.model.meta.ShareMember: Main constructor.
ShareMember(IObject, IObject) - Constructor for class ome.model.meta.ShareMember
ShareMember.Details - Class in ome.model.meta
SHORT - Static variable in class ome.util.PixelData: Identifies the type used to store pixel values.
significantBits - Variable in class ome.model.core.Pixels
SIGNIFICANTBITS - Static variable in class ome.model.core.Pixels
singleBitOn(Permissions.Role, Permissions.Right) - Static method in class ome.model.internal.Permissions: returns a long with only a single 1 defined by role/right
singleBitOut(Permissions.Role, Permissions.Right) - Static method in class ome.model.internal.Permissions: returns a long with only a single 0 defined by role/right
size - Variable in class ome.model.core.OriginalFile
size() - Method in class ome.util.PixelData: Returns the pixel count of this block of pixel data.
SIZE - Static variable in class ome.model.core.OriginalFile
sizeC - Variable in class ome.model.core.Pixels
SIZEC - Static variable in class ome.model.core.Pixels
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Detector: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Dichroic: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Filter: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Instrument: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.LightPath: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.LightSource: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Objective: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.annotations.Annotation: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.containers.Dataset: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.containers.Folder: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.containers.Project: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.core.Channel: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.core.Image: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.core.OriginalFile: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.core.PlaneInfo: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.fs.Fileset: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in interface ome.model.IAnnotated
sizeOfAnnotationLinks() - Method in class ome.model.meta.Experimenter: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.meta.Namespace: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.meta.Node: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.meta.Session: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.roi.Roi: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.roi.Shape: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.screen.Plate: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.screen.Reagent: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.screen.Screen: returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.screen.Well: returns the size of annotationLinks.
sizeOfChannels() - Method in class ome.model.core.LogicalChannel: returns the size of channels.
sizeOfChannels() - Method in class ome.model.core.Pixels: returns the size of channels.
sizeOfChildFolders() - Method in class ome.model.containers.Folder: returns the size of childFolders.
sizeOfDatasetLinks() - Method in class ome.model.containers.Project: returns the size of datasetLinks.
sizeOfDatasetLinks() - Method in class ome.model.core.Image: returns the size of datasetLinks.
sizeOfDetector() - Method in class ome.model.acquisition.Instrument: returns the size of detector.
sizeOfDichroic() - Method in class ome.model.acquisition.Instrument: returns the size of dichroic.
sizeOfEmissionFilterLink() - Method in class ome.model.acquisition.Filter: returns the size of emissionFilterLink.
sizeOfEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet: returns the size of emissionFilterLink.
sizeOfEmissionFilterLink() - Method in class ome.model.acquisition.LightPath: returns the size of emissionFilterLink.
sizeOfEvents() - Method in class ome.model.meta.Session: returns the size of events.
sizeOfExcitationFilterLink() - Method in class ome.model.acquisition.Filter: returns the size of excitationFilterLink.
sizeOfExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet: returns the size of excitationFilterLink.
sizeOfExcitationFilterLink() - Method in class ome.model.acquisition.LightPath: returns the size of excitationFilterLink.
sizeOfFilesetEntries() - Method in class ome.model.core.OriginalFile: returns the size of filesetEntries.
sizeOfFilter() - Method in class ome.model.acquisition.Instrument: returns the size of filter.
sizeOfFilterSet() - Method in class ome.model.acquisition.Instrument: returns the size of filterSet.
sizeOfFolderLinks() - Method in class ome.model.core.Image: returns the size of folderLinks.
sizeOfFolderLinks() - Method in class ome.model.roi.Roi: returns the size of folderLinks.
sizeOfGroupExperimenterMap() - Method in class ome.model.meta.Experimenter: returns the size of groupExperimenterMap.
sizeOfGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup: returns the size of groupExperimenterMap.
sizeOfImageLinks() - Method in class ome.model.containers.Dataset: returns the size of imageLinks.
sizeOfImageLinks() - Method in class ome.model.containers.Folder: returns the size of imageLinks.
sizeOfImages() - Method in class ome.model.fs.Fileset: returns the size of images.
sizeOfJobLinks() - Method in class ome.model.fs.Fileset: returns the size of jobLinks.
sizeOfLightSource() - Method in class ome.model.acquisition.Instrument: returns the size of lightSource.
sizeOfLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation: returns the size of lightSourceSettings.
sizeOfLogs() - Method in class ome.model.meta.Event: returns the size of logs.
sizeOfMicrobeamManipulation() - Method in class ome.model.experiment.Experiment: returns the size of microbeamManipulation.
sizeOfObjective() - Method in class ome.model.acquisition.Instrument: returns the size of objective.
sizeOfOriginalFileLinks() - Method in class ome.model.jobs.Job: returns the size of originalFileLinks.
sizeOfOtf() - Method in class ome.model.acquisition.Instrument: returns the size of otf.
sizeOfPixels() - Method in class ome.model.core.Image: returns the size of pixels.
sizeOfPixelsFileMaps() - Method in class ome.model.core.OriginalFile: returns the size of pixelsFileMaps.
sizeOfPixelsFileMaps() - Method in class ome.model.core.Pixels: returns the size of pixelsFileMaps.
sizeOfPlaneInfo() - Method in class ome.model.core.Pixels: returns the size of planeInfo.
sizeOfPlateAcquisitions() - Method in class ome.model.screen.Plate: returns the size of plateAcquisitions.
sizeOfPlateLinks() - Method in class ome.model.screen.Screen: returns the size of plateLinks.
sizeOfProjections() - Method in class ome.model.display.RenderingDef: returns the size of projections.
sizeOfProjectLinks() - Method in class ome.model.containers.Dataset: returns the size of projectLinks.
sizeOfReagentLinks() - Method in class ome.model.screen.Well: returns the size of reagentLinks.
sizeOfReagents() - Method in class ome.model.screen.Screen: returns the size of reagents.
sizeOfRoiLinks() - Method in class ome.model.containers.Folder: returns the size of roiLinks.
sizeOfRois() - Method in class ome.model.core.Image: returns the size of rois.
sizeOfScreenLinks() - Method in class ome.model.screen.Plate: returns the size of screenLinks.
sizeOfSessions() - Method in class ome.model.meta.Node: returns the size of sessions.
sizeOfSettings() - Method in class ome.model.core.Pixels: returns the size of settings.
sizeOfShapes() - Method in class ome.model.roi.Roi: returns the size of shapes.
sizeOfSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding: returns the size of spatialDomainEnhancement.
sizeOfThumbnails() - Method in class ome.model.core.Pixels: returns the size of thumbnails.
sizeOfUsedFiles() - Method in class ome.model.fs.Fileset: returns the size of usedFiles.
sizeOfWaveRendering() - Method in class ome.model.display.RenderingDef: returns the size of waveRendering.
sizeOfWellLinks() - Method in class ome.model.screen.Reagent: returns the size of wellLinks.
sizeOfWells() - Method in class ome.model.screen.Plate: returns the size of wells.
sizeOfWellSample() - Method in class ome.model.screen.PlateAcquisition: returns the size of wellSample.
sizeOfWellSamples() - Method in class ome.model.core.Image: returns the size of wellSamples.
sizeOfWellSamples() - Method in class ome.model.screen.Well: returns the size of wellSamples.
sizeT - Variable in class ome.model.core.Pixels
SIZET - Static variable in class ome.model.core.Pixels
sizeX - Variable in class ome.model.acquisition.OTF
sizeX - Variable in class ome.model.core.Pixels
sizeX - Variable in class ome.model.display.Thumbnail
SIZEX - Static variable in class ome.model.acquisition.OTF
SIZEX - Static variable in class ome.model.core.Pixels
SIZEX - Static variable in class ome.model.display.Thumbnail
sizeY - Variable in class ome.model.acquisition.OTF
sizeY - Variable in class ome.model.core.Pixels
sizeY - Variable in class ome.model.display.Thumbnail
SIZEY - Static variable in class ome.model.acquisition.OTF
SIZEY - Static variable in class ome.model.core.Pixels
SIZEY - Static variable in class ome.model.display.Thumbnail
sizeZ - Variable in class ome.model.core.Pixels
SIZEZ - Static variable in class ome.model.core.Pixels
source - Variable in class ome.model.roi.Roi
SOURCE - Static variable in class ome.model.roi.Roi
spatialDomainEnhancement - Variable in class ome.model.display.ChannelBinding
SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
SqlAction - Interface in ome.util: Single wrapper for all JDBC activities.
SqlAction.DeleteLog - Class in ome.util: Record-class which matches _fs_deletelog.
SqlAction.IdRowMapper - Class in ome.util
SqlAction.Impl - Class in ome.util: Base implementation which can be used
SqlAction.LoggingSqlAction - Class in ome.util
SqlAction.StringRowMapper - Class in ome.util
sqlTypes() - Method in class ome.model.units.GenericEnumType
stackAsString(Throwable) - Static method in class ome.util.ModelMapper
stageLabel - Variable in class ome.model.core.Image
StageLabel - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
StageLabel() - Constructor for class ome.model.acquisition.StageLabel
StageLabel(Long) - Constructor for class ome.model.acquisition.StageLabel
StageLabel(Long, boolean) - Constructor for class ome.model.acquisition.StageLabel: Main constructor.
StageLabel(String) - Constructor for class ome.model.acquisition.StageLabel
STAGELABEL - Static variable in class ome.model.core.Image
StageLabel.Details - Class in ome.model.acquisition
started - Variable in class ome.model.jobs.Job
started - Variable in class ome.model.meta.Session
STARTED - Static variable in class ome.model.jobs.Job
STARTED - Static variable in class ome.model.meta.Session
startPlane - Variable in class ome.model.display.ProjectionDef
STARTPLANE - Static variable in class ome.model.display.ProjectionDef
startTime - Variable in class ome.model.screen.PlateAcquisition
startTime - Variable in class ome.parameters.Filter
startTime(Timestamp) - Method in class ome.parameters.Parameters
STARTTIME - Static variable in class ome.model.screen.PlateAcquisition
statsInfo - Variable in class ome.model.core.Channel
StatsInfo - Class in ome.model.stats: These filter definitions are used by the security system to eliminate non-readable objects from queries.
StatsInfo() - Constructor for class ome.model.stats.StatsInfo
StatsInfo(Double, Double) - Constructor for class ome.model.stats.StatsInfo
StatsInfo(Long) - Constructor for class ome.model.stats.StatsInfo
StatsInfo(Long, boolean) - Constructor for class ome.model.stats.StatsInfo: Main constructor.
STATSINFO - Static variable in class ome.model.core.Channel
StatsInfo.Details - Class in ome.model.stats
status - Variable in class ome.model.jobs.Job
status - Variable in class ome.model.meta.Event
status - Variable in class ome.model.screen.Plate
status - Variable in class ome.model.screen.Well
STATUS - Static variable in class ome.model.jobs.Job
STATUS - Static variable in class ome.model.meta.Event
STATUS - Static variable in class ome.model.screen.Plate
STATUS - Static variable in class ome.model.screen.Well
stepping - Variable in class ome.model.display.ProjectionDef
STEPPING - Static variable in class ome.model.display.ProjectionDef
StringRowMapper() - Constructor for class ome.util.SqlAction.StringRowMapper
stringToObject(String) - Method in class ome.util.PrivilegedStringType
strokeColor - Variable in class ome.model.roi.Shape
STROKECOLOR - Static variable in class ome.model.roi.Shape
strokeDashArray - Variable in class ome.model.roi.Shape
STROKEDASHARRAY - Static variable in class ome.model.roi.Shape
strokeWidth - Variable in class ome.model.roi.Shape
STROKEWIDTH - Static variable in class ome.model.roi.Shape
submitted - Variable in class ome.model.jobs.Job
SUBMITTED - Static variable in class ome.model.jobs.Job
sudoer - Variable in class ome.model.meta.Session
SUDOER - Static variable in class ome.model.meta.Session
Sym(char) - Constructor for class ome.model.units.Conversion.Sym
Sym(String) - Constructor for class ome.model.units.Conversion.Sym
Sym(String) - Static method in class ome.model.units.Conversion: Static helper for creating Conversion.Sym instances.
symbol - Variable in enum ome.model.enums.UnitsElectricPotential
symbol - Variable in enum ome.model.enums.UnitsFrequency
symbol - Variable in enum ome.model.enums.UnitsLength
symbol - Variable in enum ome.model.enums.UnitsPower
symbol - Variable in enum ome.model.enums.UnitsPressure
symbol - Variable in enum ome.model.enums.UnitsTemperature
symbol - Variable in enum ome.model.enums.UnitsTime
synchronizeJobs(List<Long>) - Method in class ome.util.actions.PostgresSqlAction
synchronizeJobs(List<Long>) - Method in interface ome.util.SqlAction

T

TableIdGenerator - Class in ome.util: OMERO-specific id generation strategy.
TableIdGenerator() - Constructor for class ome.util.TableIdGenerator
TagAnnotation - Class in ome.model.annotations
TagAnnotation() - Constructor for class ome.model.annotations.TagAnnotation
TagAnnotation(Long) - Constructor for class ome.model.annotations.TagAnnotation
TagAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TagAnnotation: Main constructor.
temperature - Variable in class ome.model.acquisition.ImagingEnvironment
Temperature - Class in ome.model.units: class storing both a Temperature and a unit for that Temperature (e.g.
Temperature() - Constructor for class ome.model.units.Temperature: Deprecated.
Temperature(double, String) - Constructor for class ome.model.units.Temperature
Temperature(double, UnitsTemperature) - Constructor for class ome.model.units.Temperature
Temperature(double, Unit<Temperature>) - Constructor for class ome.model.units.Temperature
Temperature(Temperature) - Constructor for class ome.model.units.Temperature
TEMPERATURE - ome.model.units.UNITS
TEMPERATURE - Static variable in class ome.model.acquisition.ImagingEnvironment
templatePrefix - Variable in class ome.model.fs.Fileset
TEMPLATEPREFIX - Static variable in class ome.model.fs.Fileset
TERAHERTZ - ome.model.enums.UnitsFrequency
TERAMETER - ome.model.enums.UnitsLength
TERAPASCAL - ome.model.enums.UnitsPressure
TERASECOND - ome.model.enums.UnitsTime
TERAVOLT - ome.model.enums.UnitsElectricPotential
TERAWATT - ome.model.enums.UnitsPower
TermAnnotation - Class in ome.model.annotations
TermAnnotation() - Constructor for class ome.model.annotations.TermAnnotation
TermAnnotation(Long) - Constructor for class ome.model.annotations.TermAnnotation
TermAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TermAnnotation: Main constructor.
termValue - Variable in class ome.model.annotations.TermAnnotation
TERMVALUE - Static variable in class ome.model.annotations.TermAnnotation
TextAnnotation - Class in ome.model.annotations
TextAnnotation() - Constructor for class ome.model.annotations.TextAnnotation
TextAnnotation(Long) - Constructor for class ome.model.annotations.TextAnnotation
TextAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TextAnnotation: Main constructor.
textValue - Variable in class ome.model.annotations.TextAnnotation
textValue - Variable in class ome.model.roi.Ellipse
textValue - Variable in class ome.model.roi.Label
textValue - Variable in class ome.model.roi.Line
textValue - Variable in class ome.model.roi.Mask
textValue - Variable in class ome.model.roi.Path: Deprecated.
textValue - Variable in class ome.model.roi.Point
textValue - Variable in class ome.model.roi.Polygon
textValue - Variable in class ome.model.roi.Polyline
textValue - Variable in class ome.model.roi.Rectangle
TEXTVALUE - Static variable in class ome.model.annotations.TextAnnotation
TEXTVALUE - Static variable in class ome.model.roi.Ellipse
TEXTVALUE - Static variable in class ome.model.roi.Label
TEXTVALUE - Static variable in class ome.model.roi.Line
TEXTVALUE - Static variable in class ome.model.roi.Mask
TEXTVALUE - Static variable in class ome.model.roi.Path: Deprecated.
TEXTVALUE - Static variable in class ome.model.roi.Point
TEXTVALUE - Static variable in class ome.model.roi.Polygon
TEXTVALUE - Static variable in class ome.model.roi.Polyline
TEXTVALUE - Static variable in class ome.model.roi.Rectangle
theC - Variable in class ome.model.core.PlaneInfo
theC - Variable in class ome.model.roi.Shape
THEC - Static variable in class ome.model.core.PlaneInfo
THEC - Static variable in class ome.model.roi.Shape
theT - Variable in class ome.model.core.PlaneInfo
theT - Variable in class ome.model.roi.Shape
THET - Static variable in class ome.model.core.PlaneInfo
THET - Static variable in class ome.model.roi.Shape
theZ - Variable in class ome.model.core.PlaneInfo
theZ - Variable in class ome.model.roi.Shape
THEZ - Static variable in class ome.model.core.PlaneInfo
THEZ - Static variable in class ome.model.roi.Shape
THOU - ome.model.enums.UnitsLength
throwNullCollectionException(String) - Method in class ome.model.acquisition.Arc
throwNullCollectionException(String) - Method in class ome.model.acquisition.Detector
throwNullCollectionException(String) - Method in class ome.model.acquisition.DetectorSettings
throwNullCollectionException(String) - Method in class ome.model.acquisition.Dichroic
throwNullCollectionException(String) - Method in class ome.model.acquisition.Filament
throwNullCollectionException(String) - Method in class ome.model.acquisition.Filter
throwNullCollectionException(String) - Method in class ome.model.acquisition.FilterSet
throwNullCollectionException(String) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
throwNullCollectionException(String) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
throwNullCollectionException(String) - Method in class ome.model.acquisition.GenericExcitationSource
throwNullCollectionException(String) - Method in class ome.model.acquisition.ImagingEnvironment
throwNullCollectionException(String) - Method in class ome.model.acquisition.Instrument
throwNullCollectionException(String) - Method in class ome.model.acquisition.Laser
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightEmittingDiode
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightPath
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightSettings
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightSource
throwNullCollectionException(String) - Method in class ome.model.acquisition.Microscope
throwNullCollectionException(String) - Method in class ome.model.acquisition.Objective
throwNullCollectionException(String) - Method in class ome.model.acquisition.ObjectiveSettings
throwNullCollectionException(String) - Method in class ome.model.acquisition.OTF
throwNullCollectionException(String) - Method in class ome.model.acquisition.StageLabel
throwNullCollectionException(String) - Method in class ome.model.acquisition.TransmittanceRange
throwNullCollectionException(String) - Method in class ome.model.annotations.Annotation
throwNullCollectionException(String) - Method in class ome.model.annotations.AnnotationAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.BasicAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.BooleanAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.ChannelAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.CommentAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.DatasetAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.DetectorAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.DichroicAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.DoubleAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.ExperimenterAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.FileAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.FilesetAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.FilterAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.FolderAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.ImageAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.InstrumentAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.LightPathAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.LightSourceAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.ListAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.LongAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.MapAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.NamespaceAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.NodeAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.NumericAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.ObjectiveAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.OriginalFileAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.PlateAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.ProjectAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.ReagentAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.RoiAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.ScreenAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.SessionAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.ShapeAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.TagAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.TermAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.TextAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.TimestampAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.TypeAnnotation
throwNullCollectionException(String) - Method in class ome.model.annotations.WellAnnotationLink
throwNullCollectionException(String) - Method in class ome.model.annotations.XmlAnnotation
throwNullCollectionException(String) - Method in class ome.model.containers.Dataset
throwNullCollectionException(String) - Method in class ome.model.containers.DatasetImageLink
throwNullCollectionException(String) - Method in class ome.model.containers.Folder
throwNullCollectionException(String) - Method in class ome.model.containers.FolderImageLink
throwNullCollectionException(String) - Method in class ome.model.containers.FolderRoiLink
throwNullCollectionException(String) - Method in class ome.model.containers.Project
throwNullCollectionException(String) - Method in class ome.model.containers.ProjectDatasetLink
throwNullCollectionException(String) - Method in class ome.model.core.Channel
throwNullCollectionException(String) - Method in class ome.model.core.Image
throwNullCollectionException(String) - Method in class ome.model.core.LogicalChannel
throwNullCollectionException(String) - Method in class ome.model.core.OriginalFile
throwNullCollectionException(String) - Method in class ome.model.core.Pixels
throwNullCollectionException(String) - Method in class ome.model.core.PixelsOriginalFileMap
throwNullCollectionException(String) - Method in class ome.model.core.PlaneInfo
throwNullCollectionException(String) - Method in class ome.model.display.ChannelBinding
throwNullCollectionException(String) - Method in class ome.model.display.CodomainMapContext
throwNullCollectionException(String) - Method in class ome.model.display.ContrastStretchingContext
throwNullCollectionException(String) - Method in class ome.model.display.PlaneSlicingContext
throwNullCollectionException(String) - Method in class ome.model.display.ProjectionDef
throwNullCollectionException(String) - Method in class ome.model.display.QuantumDef
throwNullCollectionException(String) - Method in class ome.model.display.RenderingDef
throwNullCollectionException(String) - Method in class ome.model.display.ReverseIntensityContext
throwNullCollectionException(String) - Method in class ome.model.display.Thumbnail
throwNullCollectionException(String) - Method in class ome.model.enums.AcquisitionMode
throwNullCollectionException(String) - Method in class ome.model.enums.AdminPrivilege
throwNullCollectionException(String) - Method in class ome.model.enums.ArcType
throwNullCollectionException(String) - Method in class ome.model.enums.Binning
throwNullCollectionException(String) - Method in class ome.model.enums.ChecksumAlgorithm
throwNullCollectionException(String) - Method in class ome.model.enums.ContrastMethod
throwNullCollectionException(String) - Method in class ome.model.enums.Correction
throwNullCollectionException(String) - Method in class ome.model.enums.DetectorType
throwNullCollectionException(String) - Method in class ome.model.enums.DimensionOrder
throwNullCollectionException(String) - Method in class ome.model.enums.EventType
throwNullCollectionException(String) - Method in class ome.model.enums.ExperimentType
throwNullCollectionException(String) - Method in class ome.model.enums.Family
throwNullCollectionException(String) - Method in class ome.model.enums.FilamentType
throwNullCollectionException(String) - Method in class ome.model.enums.FilterType
throwNullCollectionException(String) - Method in class ome.model.enums.Format
throwNullCollectionException(String) - Method in class ome.model.enums.Illumination
throwNullCollectionException(String) - Method in class ome.model.enums.Immersion
throwNullCollectionException(String) - Method in class ome.model.enums.LaserMedium
throwNullCollectionException(String) - Method in class ome.model.enums.LaserType
throwNullCollectionException(String) - Method in class ome.model.enums.Medium
throwNullCollectionException(String) - Method in class ome.model.enums.MicrobeamManipulationType
throwNullCollectionException(String) - Method in class ome.model.enums.MicroscopeType
throwNullCollectionException(String) - Method in class ome.model.enums.PhotometricInterpretation
throwNullCollectionException(String) - Method in class ome.model.enums.PixelsType
throwNullCollectionException(String) - Method in class ome.model.enums.ProjectionAxis
throwNullCollectionException(String) - Method in class ome.model.enums.ProjectionType
throwNullCollectionException(String) - Method in class ome.model.enums.Pulse
throwNullCollectionException(String) - Method in class ome.model.enums.RenderingModel
throwNullCollectionException(String) - Method in class ome.model.experiment.Experiment
throwNullCollectionException(String) - Method in class ome.model.experiment.MicrobeamManipulation
throwNullCollectionException(String) - Method in class ome.model.fs.Fileset
throwNullCollectionException(String) - Method in class ome.model.fs.FilesetEntry
throwNullCollectionException(String) - Method in class ome.model.fs.FilesetJobLink
throwNullCollectionException(String) - Method in class ome.model.internal.Link
throwNullCollectionException(String) - Method in class ome.model.jobs.ImportJob: Deprecated.
throwNullCollectionException(String) - Method in class ome.model.jobs.IndexingJob
throwNullCollectionException(String) - Method in class ome.model.jobs.IntegrityCheckJob
throwNullCollectionException(String) - Method in class ome.model.jobs.Job
throwNullCollectionException(String) - Method in class ome.model.jobs.JobOriginalFileLink
throwNullCollectionException(String) - Method in class ome.model.jobs.JobStatus
throwNullCollectionException(String) - Method in class ome.model.jobs.MetadataImportJob
throwNullCollectionException(String) - Method in class ome.model.jobs.ParseJob
throwNullCollectionException(String) - Method in class ome.model.jobs.PixelDataJob
throwNullCollectionException(String) - Method in class ome.model.jobs.ScriptJob
throwNullCollectionException(String) - Method in class ome.model.jobs.ThumbnailGenerationJob
throwNullCollectionException(String) - Method in class ome.model.jobs.UploadJob
throwNullCollectionException(String) - Method in class ome.model.meta.DBPatch
throwNullCollectionException(String) - Method in class ome.model.meta.Event
throwNullCollectionException(String) - Method in class ome.model.meta.EventLog
throwNullCollectionException(String) - Method in class ome.model.meta.Experimenter
throwNullCollectionException(String) - Method in class ome.model.meta.ExperimenterGroup
throwNullCollectionException(String) - Method in class ome.model.meta.ExternalInfo
throwNullCollectionException(String) - Method in class ome.model.meta.GroupExperimenterMap
throwNullCollectionException(String) - Method in class ome.model.meta.Namespace
throwNullCollectionException(String) - Method in class ome.model.meta.Node
throwNullCollectionException(String) - Method in class ome.model.meta.Session
throwNullCollectionException(String) - Method in class ome.model.meta.Share
throwNullCollectionException(String) - Method in class ome.model.meta.ShareMember
throwNullCollectionException(String) - Method in class ome.model.roi.AffineTransform
throwNullCollectionException(String) - Method in class ome.model.roi.Ellipse
throwNullCollectionException(String) - Method in class ome.model.roi.Label
throwNullCollectionException(String) - Method in class ome.model.roi.Line
throwNullCollectionException(String) - Method in class ome.model.roi.Mask
throwNullCollectionException(String) - Method in class ome.model.roi.Path: Deprecated.
throwNullCollectionException(String) - Method in class ome.model.roi.Point
throwNullCollectionException(String) - Method in class ome.model.roi.Polygon
throwNullCollectionException(String) - Method in class ome.model.roi.Polyline
throwNullCollectionException(String) - Method in class ome.model.roi.Rectangle
throwNullCollectionException(String) - Method in class ome.model.roi.Roi
throwNullCollectionException(String) - Method in class ome.model.roi.Shape
throwNullCollectionException(String) - Method in class ome.model.screen.Plate
throwNullCollectionException(String) - Method in class ome.model.screen.PlateAcquisition
throwNullCollectionException(String) - Method in class ome.model.screen.Reagent
throwNullCollectionException(String) - Method in class ome.model.screen.Screen
throwNullCollectionException(String) - Method in class ome.model.screen.ScreenPlateLink
throwNullCollectionException(String) - Method in class ome.model.screen.Well
throwNullCollectionException(String) - Method in class ome.model.screen.WellReagentLink
throwNullCollectionException(String) - Method in class ome.model.screen.WellSample
throwNullCollectionException(String) - Method in class ome.model.stats.StatsInfo
Thumbnail - Class in ome.model.display: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Thumbnail() - Constructor for class ome.model.display.Thumbnail
Thumbnail(Long) - Constructor for class ome.model.display.Thumbnail
Thumbnail(Long, boolean) - Constructor for class ome.model.display.Thumbnail: Main constructor.
Thumbnail(Pixels, String, Integer, Integer) - Constructor for class ome.model.display.Thumbnail
Thumbnail.Details - Class in ome.model.display
ThumbnailGenerationJob - Class in ome.model.jobs
ThumbnailGenerationJob() - Constructor for class ome.model.jobs.ThumbnailGenerationJob
ThumbnailGenerationJob(Long) - Constructor for class ome.model.jobs.ThumbnailGenerationJob
ThumbnailGenerationJob(Long, boolean) - Constructor for class ome.model.jobs.ThumbnailGenerationJob: Main constructor.
thumbnails - Variable in class ome.model.core.Pixels
THUMBNAILS - Static variable in class ome.model.core.Pixels
time - Variable in class ome.model.meta.Event
Time - Class in ome.model.units: class storing both a Time and a unit for that Time (e.g.
Time() - Constructor for class ome.model.units.Time: Deprecated.
Time(double, String) - Constructor for class ome.model.units.Time
Time(double, UnitsTime) - Constructor for class ome.model.units.Time
Time(double, Unit<Time>) - Constructor for class ome.model.units.Time
Time(Time) - Constructor for class ome.model.units.Time
TIME - ome.model.units.UNITS
TIME - Static variable in class ome.model.meta.Event
timeIncrement - Variable in class ome.model.core.Pixels
TIMEINCREMENT - Static variable in class ome.model.core.Pixels
timepoint - Variable in class ome.model.screen.WellSample
TIMEPOINT - Static variable in class ome.model.screen.WellSample
TimestampAnnotation - Class in ome.model.annotations
TimestampAnnotation() - Constructor for class ome.model.annotations.TimestampAnnotation
TimestampAnnotation(Long) - Constructor for class ome.model.annotations.TimestampAnnotation
TimestampAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TimestampAnnotation: Main constructor.
timeToIdle - Variable in class ome.model.meta.Session
TIMETOIDLE - Static variable in class ome.model.meta.Session
timeToLive - Variable in class ome.model.meta.Session
TIMETOLIVE - Static variable in class ome.model.meta.Session
timeValue - Variable in class ome.model.annotations.TimestampAnnotation
TIMEVALUE - Static variable in class ome.model.annotations.TimestampAnnotation
todbvalue(Object) - Method in enum ome.model.units.UNITS: Map from the CODE-based enums which are used in Java, Ice, etc.
Token - Class in ome.model.internal: authorization token to allow/revoke certain privileges.
Token() - Constructor for class ome.model.internal.Token
tokenMatches(Token) - Method in class ome.model.internal.GraphHolder: check the Token for the IObject represented by this GraphHolder.
tokenStream(String, Reader) - Method in class ome.services.fulltext.ConfiguredAnalyzer
toPermissions(Object) - Static method in class ome.util.Utils: Returns a Permissions instance from its internal representation.
TORR - ome.model.enums.UnitsPressure
toString() - Method in class ome.model.acquisition.Arc
toString() - Method in class ome.model.acquisition.Detector
toString() - Method in class ome.model.acquisition.DetectorSettings
toString() - Method in class ome.model.acquisition.Dichroic
toString() - Method in class ome.model.acquisition.Filament
toString() - Method in class ome.model.acquisition.Filter
toString() - Method in class ome.model.acquisition.FilterSet
toString() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
toString() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
toString() - Method in class ome.model.acquisition.GenericExcitationSource
toString() - Method in class ome.model.acquisition.ImagingEnvironment
toString() - Method in class ome.model.acquisition.Instrument
toString() - Method in class ome.model.acquisition.Laser
toString() - Method in class ome.model.acquisition.LightEmittingDiode
toString() - Method in class ome.model.acquisition.LightPath
toString() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
toString() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
toString() - Method in class ome.model.acquisition.LightSettings
toString() - Method in class ome.model.acquisition.LightSource
toString() - Method in class ome.model.acquisition.Microscope
toString() - Method in class ome.model.acquisition.Objective
toString() - Method in class ome.model.acquisition.ObjectiveSettings
toString() - Method in class ome.model.acquisition.OTF
toString() - Method in class ome.model.acquisition.StageLabel
toString() - Method in class ome.model.acquisition.TransmittanceRange
toString() - Method in class ome.model.annotations.Annotation
toString() - Method in class ome.model.annotations.AnnotationAnnotationLink
toString() - Method in class ome.model.annotations.BasicAnnotation
toString() - Method in class ome.model.annotations.BooleanAnnotation
toString() - Method in class ome.model.annotations.ChannelAnnotationLink
toString() - Method in class ome.model.annotations.CommentAnnotation
toString() - Method in class ome.model.annotations.DatasetAnnotationLink
toString() - Method in class ome.model.annotations.DetectorAnnotationLink
toString() - Method in class ome.model.annotations.DichroicAnnotationLink
toString() - Method in class ome.model.annotations.DoubleAnnotation
toString() - Method in class ome.model.annotations.ExperimenterAnnotationLink
toString() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
toString() - Method in class ome.model.annotations.FileAnnotation
toString() - Method in class ome.model.annotations.FilesetAnnotationLink
toString() - Method in class ome.model.annotations.FilterAnnotationLink
toString() - Method in class ome.model.annotations.FolderAnnotationLink
toString() - Method in class ome.model.annotations.ImageAnnotationLink
toString() - Method in class ome.model.annotations.InstrumentAnnotationLink
toString() - Method in class ome.model.annotations.LightPathAnnotationLink
toString() - Method in class ome.model.annotations.LightSourceAnnotationLink
toString() - Method in class ome.model.annotations.ListAnnotation
toString() - Method in class ome.model.annotations.LongAnnotation
toString() - Method in class ome.model.annotations.MapAnnotation
toString() - Method in class ome.model.annotations.NamespaceAnnotationLink
toString() - Method in class ome.model.annotations.NodeAnnotationLink
toString() - Method in class ome.model.annotations.NumericAnnotation
toString() - Method in class ome.model.annotations.ObjectiveAnnotationLink
toString() - Method in class ome.model.annotations.OriginalFileAnnotationLink
toString() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
toString() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
toString() - Method in class ome.model.annotations.PlateAnnotationLink
toString() - Method in class ome.model.annotations.ProjectAnnotationLink
toString() - Method in class ome.model.annotations.ReagentAnnotationLink
toString() - Method in class ome.model.annotations.RoiAnnotationLink
toString() - Method in class ome.model.annotations.ScreenAnnotationLink
toString() - Method in class ome.model.annotations.SessionAnnotationLink
toString() - Method in class ome.model.annotations.ShapeAnnotationLink
toString() - Method in class ome.model.annotations.TagAnnotation
toString() - Method in class ome.model.annotations.TermAnnotation
toString() - Method in class ome.model.annotations.TextAnnotation
toString() - Method in class ome.model.annotations.TimestampAnnotation
toString() - Method in class ome.model.annotations.TypeAnnotation
toString() - Method in class ome.model.annotations.WellAnnotationLink
toString() - Method in class ome.model.annotations.XmlAnnotation
toString() - Method in class ome.model.containers.Dataset
toString() - Method in class ome.model.containers.DatasetImageLink
toString() - Method in class ome.model.containers.Folder
toString() - Method in class ome.model.containers.FolderImageLink
toString() - Method in class ome.model.containers.FolderRoiLink
toString() - Method in class ome.model.containers.Project
toString() - Method in class ome.model.containers.ProjectDatasetLink
toString() - Method in class ome.model.core.Channel
toString() - Method in class ome.model.core.Image
toString() - Method in class ome.model.core.LogicalChannel
toString() - Method in class ome.model.core.OriginalFile
toString() - Method in class ome.model.core.Pixels
toString() - Method in class ome.model.core.PixelsOriginalFileMap
toString() - Method in class ome.model.core.PlaneInfo
toString() - Method in class ome.model.display.ChannelBinding
toString() - Method in class ome.model.display.CodomainMapContext
toString() - Method in class ome.model.display.ContrastStretchingContext
toString() - Method in class ome.model.display.PlaneSlicingContext
toString() - Method in class ome.model.display.ProjectionDef
toString() - Method in class ome.model.display.QuantumDef
toString() - Method in class ome.model.display.RenderingDef
toString() - Method in class ome.model.display.ReverseIntensityContext
toString() - Method in class ome.model.display.Thumbnail
toString() - Method in class ome.model.enums.AcquisitionMode
toString() - Method in class ome.model.enums.AdminPrivilege
toString() - Method in class ome.model.enums.ArcType
toString() - Method in class ome.model.enums.Binning
toString() - Method in class ome.model.enums.ChecksumAlgorithm
toString() - Method in class ome.model.enums.ContrastMethod
toString() - Method in class ome.model.enums.Correction
toString() - Method in class ome.model.enums.DetectorType
toString() - Method in class ome.model.enums.DimensionOrder
toString() - Method in class ome.model.enums.EventType
toString() - Method in class ome.model.enums.ExperimentType
toString() - Method in class ome.model.enums.Family
toString() - Method in class ome.model.enums.FilamentType
toString() - Method in class ome.model.enums.FilterType
toString() - Method in class ome.model.enums.Format
toString() - Method in class ome.model.enums.Illumination
toString() - Method in class ome.model.enums.Immersion
toString() - Method in class ome.model.enums.LaserMedium
toString() - Method in class ome.model.enums.LaserType
toString() - Method in class ome.model.enums.Medium
toString() - Method in class ome.model.enums.MicrobeamManipulationType
toString() - Method in class ome.model.enums.MicroscopeType
toString() - Method in class ome.model.enums.PhotometricInterpretation
toString() - Method in class ome.model.enums.PixelsType
toString() - Method in class ome.model.enums.ProjectionAxis
toString() - Method in class ome.model.enums.ProjectionType
toString() - Method in class ome.model.enums.Pulse
toString() - Method in class ome.model.enums.RenderingModel
toString() - Method in class ome.model.experiment.Experiment
toString() - Method in class ome.model.experiment.MicrobeamManipulation
toString() - Method in class ome.model.fs.Fileset
toString() - Method in class ome.model.fs.FilesetEntry
toString() - Method in class ome.model.fs.FilesetJobLink
toString() - Method in class ome.model.internal.Details: simple view of the Details.
toString() - Method in class ome.model.internal.Link
toString() - Method in class ome.model.internal.NamedValue
toString() - Method in class ome.model.internal.Permissions: produces a String representation of the Permissions similar to those on a Unix filesystem.
toString() - Method in class ome.model.jobs.ImportJob: Deprecated.
toString() - Method in class ome.model.jobs.IndexingJob
toString() - Method in class ome.model.jobs.IntegrityCheckJob
toString() - Method in class ome.model.jobs.Job
toString() - Method in class ome.model.jobs.JobOriginalFileLink
toString() - Method in class ome.model.jobs.JobStatus
toString() - Method in class ome.model.jobs.MetadataImportJob
toString() - Method in class ome.model.jobs.ParseJob
toString() - Method in class ome.model.jobs.PixelDataJob
toString() - Method in class ome.model.jobs.ScriptJob
toString() - Method in class ome.model.jobs.ThumbnailGenerationJob
toString() - Method in class ome.model.jobs.UploadJob
toString() - Method in class ome.model.meta.DBPatch
toString() - Method in class ome.model.meta.Event
toString() - Method in class ome.model.meta.EventLog
toString() - Method in class ome.model.meta.Experimenter
toString() - Method in class ome.model.meta.ExperimenterGroup
toString() - Method in class ome.model.meta.ExternalInfo
toString() - Method in class ome.model.meta.GroupExperimenterMap
toString() - Method in class ome.model.meta.Namespace
toString() - Method in class ome.model.meta.Node
toString() - Method in class ome.model.meta.Session
toString() - Method in class ome.model.meta.Share
toString() - Method in class ome.model.meta.ShareMember
toString() - Method in class ome.model.roi.AffineTransform
toString() - Method in class ome.model.roi.Ellipse
toString() - Method in class ome.model.roi.Label
toString() - Method in class ome.model.roi.Line
toString() - Method in class ome.model.roi.Mask
toString() - Method in class ome.model.roi.Path: Deprecated.
toString() - Method in class ome.model.roi.Point
toString() - Method in class ome.model.roi.Polygon
toString() - Method in class ome.model.roi.Polyline
toString() - Method in class ome.model.roi.Rectangle
toString() - Method in class ome.model.roi.Roi
toString() - Method in class ome.model.roi.Shape
toString() - Method in class ome.model.screen.Plate
toString() - Method in class ome.model.screen.PlateAcquisition
toString() - Method in class ome.model.screen.Reagent
toString() - Method in class ome.model.screen.Screen
toString() - Method in class ome.model.screen.ScreenPlateLink
toString() - Method in class ome.model.screen.Well
toString() - Method in class ome.model.screen.WellReagentLink
toString() - Method in class ome.model.screen.WellSample
toString() - Method in class ome.model.stats.StatsInfo
toString() - Method in class ome.model.units.ElectricPotential
toString() - Method in class ome.model.units.Frequency
toString() - Method in class ome.model.units.Length
toString() - Method in class ome.model.units.Power
toString() - Method in class ome.model.units.Pressure
toString() - Method in class ome.model.units.Temperature
toString() - Method in class ome.model.units.Time
toString() - Method in class ome.parameters.Filter
toString() - Method in class ome.parameters.Options
toString() - Method in class ome.parameters.Parameters
toString() - Method in class ome.parameters.QueryParameter
toString() - Method in class ome.util.LSID
toString() - Method in class ome.util.SqlAction.DeleteLog
toString(String) - Method in class ome.util.PrivilegedStringType
toString(StringBuilder) - Method in class ome.model.internal.Details
transform - Variable in class ome.model.roi.Shape
TRANSFORM - Static variable in class ome.model.roi.Shape
transmittance - Variable in class ome.model.acquisition.TransmittanceRange
TRANSMITTANCE - Static variable in class ome.model.acquisition.TransmittanceRange
transmittanceRange - Variable in class ome.model.acquisition.Filter
TransmittanceRange - Class in ome.model.acquisition: These filter definitions are used by the security system to eliminate non-readable objects from queries.
TransmittanceRange() - Constructor for class ome.model.acquisition.TransmittanceRange
TransmittanceRange(Long) - Constructor for class ome.model.acquisition.TransmittanceRange
TransmittanceRange(Long, boolean) - Constructor for class ome.model.acquisition.TransmittanceRange: Main constructor.
TRANSMITTANCERANGE - Static variable in class ome.model.acquisition.Filter
TransmittanceRange.Details - Class in ome.model.acquisition
trueClass(Class<T>) - Static method in class ome.util.Utils: finds the "true" class identified by a given Class object.
trueInstance(Class<T>) - Static method in class ome.util.Utils: instantiates an object using the trueClass.
TryAgain - Exception in ome.conditions: Background processing necessary to process the request.
TryAgain(String, long) - Constructor for exception ome.conditions.TryAgain
tryLock() - Static method in class ome.util.DetailsFieldBridge
tuneable - Variable in class ome.model.acquisition.Laser
TUNEABLE - Static variable in class ome.model.acquisition.Laser
type - Variable in class ome.model.acquisition.Arc
type - Variable in class ome.model.acquisition.Detector
type - Variable in class ome.model.acquisition.Filament
type - Variable in class ome.model.acquisition.Filter
type - Variable in class ome.model.acquisition.Laser
type - Variable in class ome.model.acquisition.Microscope
type - Variable in class ome.model.display.ProjectionDef
type - Variable in class ome.model.experiment.Experiment
type - Variable in class ome.model.experiment.MicrobeamManipulation
type - Variable in class ome.model.jobs.Job
type - Variable in class ome.model.meta.Event
type - Variable in class ome.model.screen.Screen
type - Variable in class ome.model.screen.Well
type - Variable in class ome.parameters.QueryParameter
TYPE - Static variable in class ome.model.acquisition.Arc
TYPE - Static variable in class ome.model.acquisition.Detector
TYPE - Static variable in class ome.model.acquisition.Filament
TYPE - Static variable in class ome.model.acquisition.Filter
TYPE - Static variable in class ome.model.acquisition.Laser
TYPE - Static variable in class ome.model.acquisition.Microscope
TYPE - Static variable in class ome.model.display.ProjectionDef
TYPE - Static variable in class ome.model.experiment.Experiment
TYPE - Static variable in class ome.model.experiment.MicrobeamManipulation
TYPE - Static variable in class ome.model.jobs.Job
TYPE - Static variable in class ome.model.meta.Event
TYPE - Static variable in class ome.model.screen.Screen
TYPE - Static variable in class ome.model.screen.Well
TypeAnnotation - Class in ome.model.annotations
TypeAnnotation() - Constructor for class ome.model.annotations.TypeAnnotation
TypeAnnotation(Long) - Constructor for class ome.model.annotations.TypeAnnotation
TypeAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TypeAnnotation: Main constructor.

U

unique() - Method in class ome.parameters.Filter: state that this Filter should only return a single value if possible.
unique() - Method in class ome.parameters.Parameters
Unit - Interface in ome.model.units: marker interface for all of ome.model.unit types.
UNIT - Static variable in class ome.model.units.ElectricPotential
UNIT - Static variable in class ome.model.units.Frequency
UNIT - Static variable in class ome.model.units.Length
UNIT - Static variable in class ome.model.units.Power
UNIT - Static variable in class ome.model.units.Pressure
UNIT - Static variable in class ome.model.units.Temperature
UNIT - Static variable in class ome.model.units.Time
UnitEnum - Interface in ome.model.units: marker interface for all of ome.model.unit enums.
UNITS - Enum in ome.model.units
UnitsElectricPotential - Enum in ome.model.enums
UnitsFrequency - Enum in ome.model.enums
UnitsLength - Enum in ome.model.enums
UnitsPower - Enum in ome.model.enums
UnitsPressure - Enum in ome.model.enums
UnitsTemperature - Enum in ome.model.enums
UnitsTime - Enum in ome.model.enums
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Detector: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Dichroic: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Filter: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Instrument: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.LightPath: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.LightSource: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Objective: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.annotations.Annotation: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.containers.Dataset: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.containers.Folder: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.containers.Project: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.core.Channel: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.core.Image: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.core.OriginalFile: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.core.PlaneInfo: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.fs.Fileset: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in interface ome.model.IAnnotated
unlinkAnnotation(Annotation) - Method in class ome.model.meta.Experimenter: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.meta.ExperimenterGroup: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.meta.Namespace: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.meta.Node: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.meta.Session: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.roi.Roi: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.roi.Shape: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.screen.Plate: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.screen.PlateAcquisition: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.screen.Reagent: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.screen.Screen: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.screen.Well: unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkDataset(Dataset) - Method in class ome.model.containers.Project: unlinks all ome.model.containers.Dataset instances from this instance.
unlinkDataset(Dataset) - Method in class ome.model.core.Image: unlinks all ome.model.containers.Dataset instances from this instance.
unlinkEmissionFilter(Filter) - Method in class ome.model.acquisition.FilterSet: unlinks all ome.model.acquisition.Filter instances from this instance.
unlinkEmissionFilter(Filter) - Method in class ome.model.acquisition.LightPath: unlinks all ome.model.acquisition.Filter instances from this instance.
unlinkEmissionFilter(FilterSet) - Method in class ome.model.acquisition.Filter: unlinks all ome.model.acquisition.FilterSet instances from this instance.
unlinkExcitationFilter(Filter) - Method in class ome.model.acquisition.FilterSet: unlinks all ome.model.acquisition.Filter instances from this instance.
unlinkExcitationFilter(Filter) - Method in class ome.model.acquisition.LightPath: unlinks all ome.model.acquisition.Filter instances from this instance.
unlinkExcitationFilter(FilterSet) - Method in class ome.model.acquisition.Filter: unlinks all ome.model.acquisition.FilterSet instances from this instance.
unlinkExperimenter(Experimenter) - Method in class ome.model.meta.ExperimenterGroup: unlinks all ome.model.meta.Experimenter instances from this instance.
unlinkExperimenterGroup(ExperimenterGroup) - Method in class ome.model.meta.Experimenter: unlinks all ome.model.meta.ExperimenterGroup instances from this instance.
unlinkFolder(Folder) - Method in class ome.model.core.Image: unlinks all ome.model.containers.Folder instances from this instance.
unlinkFolder(Folder) - Method in class ome.model.roi.Roi: unlinks all ome.model.containers.Folder instances from this instance.
unlinkImage(Image) - Method in class ome.model.containers.Dataset: unlinks all ome.model.core.Image instances from this instance.
unlinkImage(Image) - Method in class ome.model.containers.Folder: unlinks all ome.model.core.Image instances from this instance.
unlinkJob(Job) - Method in class ome.model.fs.Fileset: unlinks all ome.model.jobs.Job instances from this instance.
unlinkOriginalFile(OriginalFile) - Method in class ome.model.core.Pixels: unlinks all ome.model.core.OriginalFile instances from this instance.
unlinkOriginalFile(OriginalFile) - Method in class ome.model.jobs.Job: unlinks all ome.model.core.OriginalFile instances from this instance.
unlinkPixels(Pixels) - Method in class ome.model.core.OriginalFile: unlinks all ome.model.core.Pixels instances from this instance.
unlinkPlate(Plate) - Method in class ome.model.screen.Screen: unlinks all ome.model.screen.Plate instances from this instance.
unlinkProject(Project) - Method in class ome.model.containers.Dataset: unlinks all ome.model.containers.Project instances from this instance.
unlinkReagent(Reagent) - Method in class ome.model.screen.Well: unlinks all ome.model.screen.Reagent instances from this instance.
unlinkRoi(Roi) - Method in class ome.model.containers.Folder: unlinks all ome.model.roi.Roi instances from this instance.
unlinkScreen(Screen) - Method in class ome.model.screen.Plate: unlinks all ome.model.screen.Screen instances from this instance.
unlinkWell(Well) - Method in class ome.model.screen.Reagent: unlinks all ome.model.screen.Well instances from this instance.
unload() - Method in class ome.model.acquisition.Arc
unload() - Method in class ome.model.acquisition.Detector
unload() - Method in class ome.model.acquisition.DetectorSettings
unload() - Method in class ome.model.acquisition.Dichroic
unload() - Method in class ome.model.acquisition.Filament
unload() - Method in class ome.model.acquisition.Filter
unload() - Method in class ome.model.acquisition.FilterSet
unload() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
unload() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
unload() - Method in class ome.model.acquisition.GenericExcitationSource
unload() - Method in class ome.model.acquisition.ImagingEnvironment
unload() - Method in class ome.model.acquisition.Instrument
unload() - Method in class ome.model.acquisition.Laser
unload() - Method in class ome.model.acquisition.LightEmittingDiode
unload() - Method in class ome.model.acquisition.LightPath
unload() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
unload() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
unload() - Method in class ome.model.acquisition.LightSettings
unload() - Method in class ome.model.acquisition.LightSource
unload() - Method in class ome.model.acquisition.Microscope
unload() - Method in class ome.model.acquisition.Objective
unload() - Method in class ome.model.acquisition.ObjectiveSettings
unload() - Method in class ome.model.acquisition.OTF
unload() - Method in class ome.model.acquisition.StageLabel
unload() - Method in class ome.model.acquisition.TransmittanceRange
unload() - Method in class ome.model.annotations.Annotation
unload() - Method in class ome.model.annotations.AnnotationAnnotationLink
unload() - Method in class ome.model.annotations.BasicAnnotation
unload() - Method in class ome.model.annotations.BooleanAnnotation
unload() - Method in class ome.model.annotations.ChannelAnnotationLink
unload() - Method in class ome.model.annotations.CommentAnnotation
unload() - Method in class ome.model.annotations.DatasetAnnotationLink
unload() - Method in class ome.model.annotations.DetectorAnnotationLink
unload() - Method in class ome.model.annotations.DichroicAnnotationLink
unload() - Method in class ome.model.annotations.DoubleAnnotation
unload() - Method in class ome.model.annotations.ExperimenterAnnotationLink
unload() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
unload() - Method in class ome.model.annotations.FileAnnotation
unload() - Method in class ome.model.annotations.FilesetAnnotationLink
unload() - Method in class ome.model.annotations.FilterAnnotationLink
unload() - Method in class ome.model.annotations.FolderAnnotationLink
unload() - Method in class ome.model.annotations.ImageAnnotationLink
unload() - Method in class ome.model.annotations.InstrumentAnnotationLink
unload() - Method in class ome.model.annotations.LightPathAnnotationLink
unload() - Method in class ome.model.annotations.LightSourceAnnotationLink
unload() - Method in class ome.model.annotations.ListAnnotation
unload() - Method in class ome.model.annotations.LongAnnotation
unload() - Method in class ome.model.annotations.MapAnnotation
unload() - Method in class ome.model.annotations.NamespaceAnnotationLink
unload() - Method in class ome.model.annotations.NodeAnnotationLink
unload() - Method in class ome.model.annotations.NumericAnnotation
unload() - Method in class ome.model.annotations.ObjectiveAnnotationLink
unload() - Method in class ome.model.annotations.OriginalFileAnnotationLink
unload() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
unload() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
unload() - Method in class ome.model.annotations.PlateAnnotationLink
unload() - Method in class ome.model.annotations.ProjectAnnotationLink
unload() - Method in class ome.model.annotations.ReagentAnnotationLink
unload() - Method in class ome.model.annotations.RoiAnnotationLink
unload() - Method in class ome.model.annotations.ScreenAnnotationLink
unload() - Method in class ome.model.annotations.SessionAnnotationLink
unload() - Method in class ome.model.annotations.ShapeAnnotationLink
unload() - Method in class ome.model.annotations.TagAnnotation
unload() - Method in class ome.model.annotations.TermAnnotation
unload() - Method in class ome.model.annotations.TextAnnotation
unload() - Method in class ome.model.annotations.TimestampAnnotation
unload() - Method in class ome.model.annotations.TypeAnnotation
unload() - Method in class ome.model.annotations.WellAnnotationLink
unload() - Method in class ome.model.annotations.XmlAnnotation
unload() - Method in class ome.model.containers.Dataset
unload() - Method in class ome.model.containers.DatasetImageLink
unload() - Method in class ome.model.containers.Folder
unload() - Method in class ome.model.containers.FolderImageLink
unload() - Method in class ome.model.containers.FolderRoiLink
unload() - Method in class ome.model.containers.Project
unload() - Method in class ome.model.containers.ProjectDatasetLink
unload() - Method in class ome.model.core.Channel
unload() - Method in class ome.model.core.Image
unload() - Method in class ome.model.core.LogicalChannel
unload() - Method in class ome.model.core.OriginalFile
unload() - Method in class ome.model.core.Pixels
unload() - Method in class ome.model.core.PixelsOriginalFileMap
unload() - Method in class ome.model.core.PlaneInfo
unload() - Method in class ome.model.display.ChannelBinding
unload() - Method in class ome.model.display.CodomainMapContext
unload() - Method in class ome.model.display.ContrastStretchingContext
unload() - Method in class ome.model.display.PlaneSlicingContext
unload() - Method in class ome.model.display.ProjectionDef
unload() - Method in class ome.model.display.QuantumDef
unload() - Method in class ome.model.display.RenderingDef
unload() - Method in class ome.model.display.ReverseIntensityContext
unload() - Method in class ome.model.display.Thumbnail
unload() - Method in class ome.model.enums.AcquisitionMode
unload() - Method in class ome.model.enums.AdminPrivilege
unload() - Method in class ome.model.enums.ArcType
unload() - Method in class ome.model.enums.Binning
unload() - Method in class ome.model.enums.ChecksumAlgorithm
unload() - Method in class ome.model.enums.ContrastMethod
unload() - Method in class ome.model.enums.Correction
unload() - Method in class ome.model.enums.DetectorType
unload() - Method in class ome.model.enums.DimensionOrder
unload() - Method in class ome.model.enums.EventType
unload() - Method in class ome.model.enums.ExperimentType
unload() - Method in class ome.model.enums.Family
unload() - Method in class ome.model.enums.FilamentType
unload() - Method in class ome.model.enums.FilterType
unload() - Method in class ome.model.enums.Format
unload() - Method in class ome.model.enums.Illumination
unload() - Method in class ome.model.enums.Immersion
unload() - Method in class ome.model.enums.LaserMedium
unload() - Method in class ome.model.enums.LaserType
unload() - Method in class ome.model.enums.Medium
unload() - Method in class ome.model.enums.MicrobeamManipulationType
unload() - Method in class ome.model.enums.MicroscopeType
unload() - Method in class ome.model.enums.PhotometricInterpretation
unload() - Method in class ome.model.enums.PixelsType
unload() - Method in class ome.model.enums.ProjectionAxis
unload() - Method in class ome.model.enums.ProjectionType
unload() - Method in class ome.model.enums.Pulse
unload() - Method in class ome.model.enums.RenderingModel
unload() - Method in class ome.model.experiment.Experiment
unload() - Method in class ome.model.experiment.MicrobeamManipulation
unload() - Method in class ome.model.fs.Fileset
unload() - Method in class ome.model.fs.FilesetEntry
unload() - Method in class ome.model.fs.FilesetJobLink
unload() - Method in class ome.model.internal.Link
unload() - Method in interface ome.model.IObject: set the loaded field to false, and set all non-ID fields to null.
unload() - Method in class ome.model.jobs.ImportJob: Deprecated.
unload() - Method in class ome.model.jobs.IndexingJob
unload() - Method in class ome.model.jobs.IntegrityCheckJob
unload() - Method in class ome.model.jobs.Job
unload() - Method in class ome.model.jobs.JobOriginalFileLink
unload() - Method in class ome.model.jobs.JobStatus
unload() - Method in class ome.model.jobs.MetadataImportJob
unload() - Method in class ome.model.jobs.ParseJob
unload() - Method in class ome.model.jobs.PixelDataJob
unload() - Method in class ome.model.jobs.ScriptJob
unload() - Method in class ome.model.jobs.ThumbnailGenerationJob
unload() - Method in class ome.model.jobs.UploadJob
unload() - Method in class ome.model.meta.DBPatch
unload() - Method in class ome.model.meta.Event
unload() - Method in class ome.model.meta.EventLog
unload() - Method in class ome.model.meta.Experimenter
unload() - Method in class ome.model.meta.ExperimenterGroup
unload() - Method in class ome.model.meta.ExternalInfo
unload() - Method in class ome.model.meta.GroupExperimenterMap
unload() - Method in class ome.model.meta.Namespace
unload() - Method in class ome.model.meta.Node
unload() - Method in class ome.model.meta.Session
unload() - Method in class ome.model.meta.Share
unload() - Method in class ome.model.meta.ShareMember
unload() - Method in class ome.model.roi.AffineTransform
unload() - Method in class ome.model.roi.Ellipse
unload() - Method in class ome.model.roi.Label
unload() - Method in class ome.model.roi.Line
unload() - Method in class ome.model.roi.Mask
unload() - Method in class ome.model.roi.Path: Deprecated.
unload() - Method in class ome.model.roi.Point
unload() - Method in class ome.model.roi.Polygon
unload() - Method in class ome.model.roi.Polyline
unload() - Method in class ome.model.roi.Rectangle
unload() - Method in class ome.model.roi.Roi
unload() - Method in class ome.model.roi.Shape
unload() - Method in class ome.model.screen.Plate
unload() - Method in class ome.model.screen.PlateAcquisition
unload() - Method in class ome.model.screen.Reagent
unload() - Method in class ome.model.screen.Screen
unload() - Method in class ome.model.screen.ScreenPlateLink
unload() - Method in class ome.model.screen.Well
unload() - Method in class ome.model.screen.WellReagentLink
unload() - Method in class ome.model.screen.WellSample
unload() - Method in class ome.model.stats.StatsInfo
unload() - Method in class ome.util.PermDetails
unlock() - Static method in class ome.util.DetailsFieldBridge
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Detector: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Dichroic: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Filter: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Instrument: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.LightPath: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.LightSource: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Objective: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.annotations.Annotation: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.containers.Dataset: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.containers.Folder: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.containers.Project: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.core.Channel: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.core.Image: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.core.OriginalFile: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.core.PlaneInfo: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.fs.Fileset: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in interface ome.model.IAnnotated
unmodifiableAnnotationLinks() - Method in class ome.model.meta.Experimenter: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.meta.Namespace: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.meta.Node: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.meta.Session: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.roi.Roi: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.roi.Shape: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.screen.Plate: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.screen.Reagent: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.screen.Screen: Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.screen.Well: Returns an unmodifiable collection-view
unmodifiableChannels() - Method in class ome.model.core.LogicalChannel: Returns an unmodifiable collection-view
unmodifiableChannels() - Method in class ome.model.core.Pixels: Returns an unmodifiable collection-view
unmodifiableChildFolders() - Method in class ome.model.containers.Folder: Returns an unmodifiable collection-view
unmodifiableDatasetLinks() - Method in class ome.model.containers.Project: Returns an unmodifiable collection-view
unmodifiableDatasetLinks() - Method in class ome.model.core.Image: Returns an unmodifiable collection-view
unmodifiableDetector() - Method in class ome.model.acquisition.Instrument: Returns an unmodifiable collection-view
unmodifiableDichroic() - Method in class ome.model.acquisition.Instrument: Returns an unmodifiable collection-view
unmodifiableEmissionFilterLink() - Method in class ome.model.acquisition.Filter: Returns an unmodifiable collection-view
unmodifiableEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet: Returns an unmodifiable collection-view
unmodifiableEmissionFilterLink() - Method in class ome.model.acquisition.LightPath: Returns an unmodifiable collection-view
unmodifiableEvents() - Method in class ome.model.meta.Session: Returns an unmodifiable collection-view
unmodifiableExcitationFilterLink() - Method in class ome.model.acquisition.Filter: Returns an unmodifiable collection-view
unmodifiableExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet: Returns an unmodifiable collection-view
unmodifiableExcitationFilterLink() - Method in class ome.model.acquisition.LightPath: Returns an unmodifiable collection-view
unmodifiableFilesetEntries() - Method in class ome.model.core.OriginalFile: Returns an unmodifiable collection-view
unmodifiableFilter() - Method in class ome.model.acquisition.Instrument: Returns an unmodifiable collection-view
unmodifiableFilterSet() - Method in class ome.model.acquisition.Instrument: Returns an unmodifiable collection-view
unmodifiableFolderLinks() - Method in class ome.model.core.Image: Returns an unmodifiable collection-view
unmodifiableFolderLinks() - Method in class ome.model.roi.Roi: Returns an unmodifiable collection-view
unmodifiableGroupExperimenterMap() - Method in class ome.model.meta.Experimenter: Returns an unmodifiable collection-view
unmodifiableGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup: Returns an unmodifiable collection-view
unmodifiableImageLinks() - Method in class ome.model.containers.Dataset: Returns an unmodifiable collection-view
unmodifiableImageLinks() - Method in class ome.model.containers.Folder: Returns an unmodifiable collection-view
unmodifiableImages() - Method in class ome.model.fs.Fileset: Returns an unmodifiable collection-view
unmodifiableJobLinks() - Method in class ome.model.fs.Fileset: Returns an unmodifiable collection-view
unmodifiableLightSource() - Method in class ome.model.acquisition.Instrument: Returns an unmodifiable collection-view
unmodifiableLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation: Returns an unmodifiable collection-view
unmodifiableLogs() - Method in class ome.model.meta.Event: Returns an unmodifiable collection-view
unmodifiableMicrobeamManipulation() - Method in class ome.model.experiment.Experiment: Returns an unmodifiable collection-view
unmodifiableObjective() - Method in class ome.model.acquisition.Instrument: Returns an unmodifiable collection-view
unmodifiableOriginalFileLinks() - Method in class ome.model.jobs.Job: Returns an unmodifiable collection-view
unmodifiableOtf() - Method in class ome.model.acquisition.Instrument: Returns an unmodifiable collection-view
unmodifiablePixels() - Method in class ome.model.core.Image: Returns an unmodifiable collection-view
unmodifiablePixelsFileMaps() - Method in class ome.model.core.OriginalFile: Returns an unmodifiable collection-view
unmodifiablePixelsFileMaps() - Method in class ome.model.core.Pixels: Returns an unmodifiable collection-view
unmodifiablePlaneInfo() - Method in class ome.model.core.Pixels: Returns an unmodifiable collection-view
unmodifiablePlateAcquisitions() - Method in class ome.model.screen.Plate: Returns an unmodifiable collection-view
unmodifiablePlateLinks() - Method in class ome.model.screen.Screen: Returns an unmodifiable collection-view
unmodifiableProjections() - Method in class ome.model.display.RenderingDef: Returns an unmodifiable collection-view
unmodifiableProjectLinks() - Method in class ome.model.containers.Dataset: Returns an unmodifiable collection-view
unmodifiableReagentLinks() - Method in class ome.model.screen.Well: Returns an unmodifiable collection-view
unmodifiableReagents() - Method in class ome.model.screen.Screen: Returns an unmodifiable collection-view
unmodifiableRoiLinks() - Method in class ome.model.containers.Folder: Returns an unmodifiable collection-view
unmodifiableRois() - Method in class ome.model.core.Image: Returns an unmodifiable collection-view
unmodifiableScreenLinks() - Method in class ome.model.screen.Plate: Returns an unmodifiable collection-view
unmodifiableSessions() - Method in class ome.model.meta.Node: Returns an unmodifiable collection-view
unmodifiableSettings() - Method in class ome.model.core.Pixels: Returns an unmodifiable collection-view
unmodifiableShapes() - Method in class ome.model.roi.Roi: Returns an unmodifiable collection-view
unmodifiableSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding: Returns an unmodifiable collection-view
unmodifiableThumbnails() - Method in class ome.model.core.Pixels: Returns an unmodifiable collection-view
unmodifiableUsedFiles() - Method in class ome.model.fs.Fileset: Returns an unmodifiable collection-view
unmodifiableWaveRendering() - Method in class ome.model.display.RenderingDef: Returns an unmodifiable collection-view
unmodifiableWellLinks() - Method in class ome.model.screen.Reagent: Returns an unmodifiable collection-view
unmodifiableWells() - Method in class ome.model.screen.Plate: Returns an unmodifiable collection-view
unmodifiableWellSample() - Method in class ome.model.screen.PlateAcquisition: Returns an unmodifiable collection-view
unmodifiableWellSamples() - Method in class ome.model.core.Image: Returns an unmodifiable collection-view
unmodifiableWellSamples() - Method in class ome.model.screen.Well: Returns an unmodifiable collection-view
unSet(Permissions.Flag) - Method in class ome.model.internal.Permissions: turn a given Permissions.Flag off.
UNUSED - ome.model.internal.Permissions.Flag
up - Variable in class ome.model.meta.Node
UP - Static variable in class ome.model.meta.Node
updateConfiguration(String, String) - Method in class ome.util.actions.PostgresSqlAction
updateConfiguration(String, String) - Method in interface ome.util.SqlAction
UPDATEEVENT - Static variable in class ome.model.internal.Details
updateOrInsertConfigValue(String, String) - Method in class ome.util.SqlAction.Impl
updateOrInsertConfigValue(String, String) - Method in interface ome.util.SqlAction
updateRows(PersistentCollection, Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister
updateSessionUserIP(long, String) - Method in class ome.util.actions.PostgresSqlAction
updateSessionUserIP(long, String) - Method in interface ome.util.SqlAction
UploadJob - Class in ome.model.jobs
UploadJob() - Constructor for class ome.model.jobs.UploadJob
UploadJob(Long) - Constructor for class ome.model.jobs.UploadJob
UploadJob(Long, boolean) - Constructor for class ome.model.jobs.UploadJob: Main constructor.
upperLimit - Variable in class ome.model.display.PlaneSlicingContext
UPPERLIMIT - Static variable in class ome.model.display.PlaneSlicingContext
usedFiles - Variable in class ome.model.fs.Fileset
USEDFILES - Static variable in class ome.model.fs.Fileset
USER - ome.model.internal.Permissions.Role
USER_IMMUTABLE - Static variable in class ome.model.internal.Permissions: R______ : user and only the user can only read
USER_PRIVATE - Static variable in class ome.model.internal.Permissions: RW____ : user and only user can read and write
USER_WRITEABLE - Static variable in class ome.model.internal.Permissions: RWR_R_ : all can read, user can write
userAgent - Variable in class ome.model.meta.Session
USERAGENT - Static variable in class ome.model.meta.Session
userIP - Variable in class ome.model.meta.Session: Deprecated.
USERIP - Static variable in class ome.model.meta.Session: Deprecated.
username - Variable in class ome.model.jobs.Job
USERNAME - Static variable in class ome.model.jobs.Job
Utils - Class in ome.util: various tools needed throughout Omero.
Utils() - Constructor for class ome.util.Utils
uuid - Variable in class ome.model.meta.ExternalInfo
uuid - Variable in class ome.model.meta.Node
uuid - Variable in class ome.model.meta.Session
UUID - Static variable in class ome.model.meta.ExternalInfo
UUID - Static variable in class ome.model.meta.Node
UUID - Static variable in class ome.model.meta.Session

V

valid(Pixels) - Static method in class ome.util.Validator
VALID() - Static method in class ome.util.Validation
validate() - Method in class ome.model.acquisition.Arc
validate() - Method in class ome.model.acquisition.Detector
validate() - Method in class ome.model.acquisition.DetectorSettings
validate() - Method in class ome.model.acquisition.Dichroic
validate() - Method in class ome.model.acquisition.Filament
validate() - Method in class ome.model.acquisition.Filter
validate() - Method in class ome.model.acquisition.FilterSet
validate() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
validate() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
validate() - Method in class ome.model.acquisition.GenericExcitationSource
validate() - Method in class ome.model.acquisition.ImagingEnvironment
validate() - Method in class ome.model.acquisition.Instrument
validate() - Method in class ome.model.acquisition.Laser
validate() - Method in class ome.model.acquisition.LightEmittingDiode
validate() - Method in class ome.model.acquisition.LightPath
validate() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
validate() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
validate() - Method in class ome.model.acquisition.LightSettings
validate() - Method in class ome.model.acquisition.LightSource
validate() - Method in class ome.model.acquisition.Microscope
validate() - Method in class ome.model.acquisition.Objective
validate() - Method in class ome.model.acquisition.ObjectiveSettings
validate() - Method in class ome.model.acquisition.OTF
validate() - Method in class ome.model.acquisition.StageLabel
validate() - Method in class ome.model.acquisition.TransmittanceRange
validate() - Method in class ome.model.annotations.Annotation
validate() - Method in class ome.model.annotations.AnnotationAnnotationLink
validate() - Method in class ome.model.annotations.BasicAnnotation
validate() - Method in class ome.model.annotations.BooleanAnnotation
validate() - Method in class ome.model.annotations.ChannelAnnotationLink
validate() - Method in class ome.model.annotations.CommentAnnotation
validate() - Method in class ome.model.annotations.DatasetAnnotationLink
validate() - Method in class ome.model.annotations.DetectorAnnotationLink
validate() - Method in class ome.model.annotations.DichroicAnnotationLink
validate() - Method in class ome.model.annotations.DoubleAnnotation
validate() - Method in class ome.model.annotations.ExperimenterAnnotationLink
validate() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
validate() - Method in class ome.model.annotations.FileAnnotation
validate() - Method in class ome.model.annotations.FilesetAnnotationLink
validate() - Method in class ome.model.annotations.FilterAnnotationLink
validate() - Method in class ome.model.annotations.FolderAnnotationLink
validate() - Method in class ome.model.annotations.ImageAnnotationLink
validate() - Method in class ome.model.annotations.InstrumentAnnotationLink
validate() - Method in class ome.model.annotations.LightPathAnnotationLink
validate() - Method in class ome.model.annotations.LightSourceAnnotationLink
validate() - Method in class ome.model.annotations.ListAnnotation
validate() - Method in class ome.model.annotations.LongAnnotation
validate() - Method in class ome.model.annotations.MapAnnotation
validate() - Method in class ome.model.annotations.NamespaceAnnotationLink
validate() - Method in class ome.model.annotations.NodeAnnotationLink
validate() - Method in class ome.model.annotations.NumericAnnotation
validate() - Method in class ome.model.annotations.ObjectiveAnnotationLink
validate() - Method in class ome.model.annotations.OriginalFileAnnotationLink
validate() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
validate() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
validate() - Method in class ome.model.annotations.PlateAnnotationLink
validate() - Method in class ome.model.annotations.ProjectAnnotationLink
validate() - Method in class ome.model.annotations.ReagentAnnotationLink
validate() - Method in class ome.model.annotations.RoiAnnotationLink
validate() - Method in class ome.model.annotations.ScreenAnnotationLink
validate() - Method in class ome.model.annotations.SessionAnnotationLink
validate() - Method in class ome.model.annotations.ShapeAnnotationLink
validate() - Method in class ome.model.annotations.TagAnnotation
validate() - Method in class ome.model.annotations.TermAnnotation
validate() - Method in class ome.model.annotations.TextAnnotation
validate() - Method in class ome.model.annotations.TimestampAnnotation
validate() - Method in class ome.model.annotations.TypeAnnotation
validate() - Method in class ome.model.annotations.WellAnnotationLink
validate() - Method in class ome.model.annotations.XmlAnnotation
validate() - Method in class ome.model.containers.Dataset
validate() - Method in class ome.model.containers.DatasetImageLink
validate() - Method in class ome.model.containers.Folder
validate() - Method in class ome.model.containers.FolderImageLink
validate() - Method in class ome.model.containers.FolderRoiLink
validate() - Method in class ome.model.containers.Project
validate() - Method in class ome.model.containers.ProjectDatasetLink
validate() - Method in class ome.model.core.Channel
validate() - Method in class ome.model.core.Image
validate() - Method in class ome.model.core.LogicalChannel
validate() - Method in class ome.model.core.OriginalFile
validate() - Method in class ome.model.core.Pixels
validate() - Method in class ome.model.core.PixelsOriginalFileMap
validate() - Method in class ome.model.core.PlaneInfo
validate() - Method in class ome.model.display.ChannelBinding
validate() - Method in class ome.model.display.CodomainMapContext
validate() - Method in class ome.model.display.ContrastStretchingContext
validate() - Method in class ome.model.display.PlaneSlicingContext
validate() - Method in class ome.model.display.ProjectionDef
validate() - Method in class ome.model.display.QuantumDef
validate() - Method in class ome.model.display.RenderingDef
validate() - Method in class ome.model.display.ReverseIntensityContext
validate() - Method in class ome.model.display.Thumbnail
validate() - Method in class ome.model.enums.AcquisitionMode
validate() - Method in class ome.model.enums.AdminPrivilege
validate() - Method in class ome.model.enums.ArcType
validate() - Method in class ome.model.enums.Binning
validate() - Method in class ome.model.enums.ChecksumAlgorithm
validate() - Method in class ome.model.enums.ContrastMethod
validate() - Method in class ome.model.enums.Correction
validate() - Method in class ome.model.enums.DetectorType
validate() - Method in class ome.model.enums.DimensionOrder
validate() - Method in class ome.model.enums.EventType
validate() - Method in class ome.model.enums.ExperimentType
validate() - Method in class ome.model.enums.Family
validate() - Method in class ome.model.enums.FilamentType
validate() - Method in class ome.model.enums.FilterType
validate() - Method in class ome.model.enums.Format
validate() - Method in class ome.model.enums.Illumination
validate() - Method in class ome.model.enums.Immersion
validate() - Method in class ome.model.enums.LaserMedium
validate() - Method in class ome.model.enums.LaserType
validate() - Method in class ome.model.enums.Medium
validate() - Method in class ome.model.enums.MicrobeamManipulationType
validate() - Method in class ome.model.enums.MicroscopeType
validate() - Method in class ome.model.enums.PhotometricInterpretation
validate() - Method in class ome.model.enums.PixelsType
validate() - Method in class ome.model.enums.ProjectionAxis
validate() - Method in class ome.model.enums.ProjectionType
validate() - Method in class ome.model.enums.Pulse
validate() - Method in class ome.model.enums.RenderingModel
validate() - Method in class ome.model.experiment.Experiment
validate() - Method in class ome.model.experiment.MicrobeamManipulation
validate() - Method in class ome.model.fs.Fileset
validate() - Method in class ome.model.fs.FilesetEntry
validate() - Method in class ome.model.fs.FilesetJobLink
validate() - Method in class ome.model.internal.Link
validate() - Method in interface ome.model.IObject: calls the class-specific validator for this instance and returns the Validation object.
validate() - Method in class ome.model.jobs.ImportJob: Deprecated.
validate() - Method in class ome.model.jobs.IndexingJob
validate() - Method in class ome.model.jobs.IntegrityCheckJob
validate() - Method in class ome.model.jobs.Job
validate() - Method in class ome.model.jobs.JobOriginalFileLink
validate() - Method in class ome.model.jobs.JobStatus
validate() - Method in class ome.model.jobs.MetadataImportJob
validate() - Method in class ome.model.jobs.ParseJob
validate() - Method in class ome.model.jobs.PixelDataJob
validate() - Method in class ome.model.jobs.ScriptJob
validate() - Method in class ome.model.jobs.ThumbnailGenerationJob
validate() - Method in class ome.model.jobs.UploadJob
validate() - Method in class ome.model.meta.DBPatch
validate() - Method in class ome.model.meta.Event
validate() - Method in class ome.model.meta.EventLog
validate() - Method in class ome.model.meta.Experimenter
validate() - Method in class ome.model.meta.ExperimenterGroup
validate() - Method in class ome.model.meta.ExternalInfo
validate() - Method in class ome.model.meta.GroupExperimenterMap
validate() - Method in class ome.model.meta.Namespace
validate() - Method in class ome.model.meta.Node
validate() - Method in class ome.model.meta.Session
validate() - Method in class ome.model.meta.Share
validate() - Method in class ome.model.meta.ShareMember
validate() - Method in class ome.model.roi.AffineTransform
validate() - Method in class ome.model.roi.Ellipse
validate() - Method in class ome.model.roi.Label
validate() - Method in class ome.model.roi.Line
validate() - Method in class ome.model.roi.Mask
validate() - Method in class ome.model.roi.Path: Deprecated.
validate() - Method in class ome.model.roi.Point
validate() - Method in class ome.model.roi.Polygon
validate() - Method in class ome.model.roi.Polyline
validate() - Method in class ome.model.roi.Rectangle
validate() - Method in class ome.model.roi.Roi
validate() - Method in class ome.model.roi.Shape
validate() - Method in class ome.model.screen.Plate
validate() - Method in class ome.model.screen.PlateAcquisition
validate() - Method in class ome.model.screen.Reagent
validate() - Method in class ome.model.screen.Screen
validate() - Method in class ome.model.screen.ScreenPlateLink
validate() - Method in class ome.model.screen.Well
validate() - Method in class ome.model.screen.WellReagentLink
validate() - Method in class ome.model.screen.WellSample
validate() - Method in class ome.model.stats.StatsInfo
validate() - Method in class ome.util.PermDetails
validate(ImagingEnvironment) - Static method in class ome.util.Validator
validate(Channel) - Static method in class ome.util.Validator
validate(IObject) - Static method in class ome.util.Validator
Validation - Class in ome.util: collector for Model-validation status.
Validation() - Constructor for class ome.util.Validation
ValidationException - Exception in ome.conditions: More specific ApiUsageException, in that the specification of your data as outlined in the OME specification is incorrect.
ValidationException(String) - Constructor for exception ome.conditions.ValidationException
Validator - Class in ome.util: tests of model objects for validity.
Validator() - Constructor for class ome.util.Validator
value - Variable in class ome.model.enums.AcquisitionMode
value - Variable in class ome.model.enums.AdminPrivilege
value - Variable in class ome.model.enums.ArcType
value - Variable in class ome.model.enums.Binning
value - Variable in class ome.model.enums.ChecksumAlgorithm
value - Variable in class ome.model.enums.ContrastMethod
value - Variable in class ome.model.enums.Correction
value - Variable in class ome.model.enums.DetectorType
value - Variable in class ome.model.enums.DimensionOrder
value - Variable in class ome.model.enums.EventType
value - Variable in class ome.model.enums.ExperimentType
value - Variable in class ome.model.enums.Family
value - Variable in class ome.model.enums.FilamentType
value - Variable in class ome.model.enums.FilterType
value - Variable in class ome.model.enums.Format
value - Variable in class ome.model.enums.Illumination
value - Variable in class ome.model.enums.Immersion
value - Variable in class ome.model.enums.LaserMedium
value - Variable in class ome.model.enums.LaserType
value - Variable in class ome.model.enums.Medium
value - Variable in class ome.model.enums.MicrobeamManipulationType
value - Variable in class ome.model.enums.MicroscopeType
value - Variable in class ome.model.enums.PhotometricInterpretation
value - Variable in class ome.model.enums.PixelsType
value - Variable in class ome.model.enums.ProjectionAxis
value - Variable in class ome.model.enums.ProjectionType
value - Variable in class ome.model.enums.Pulse
value - Variable in class ome.model.enums.RenderingModel
value - Variable in class ome.model.jobs.JobStatus
value - Variable in class ome.parameters.QueryParameter
VALUE - Static variable in class ome.model.enums.AcquisitionMode
VALUE - Static variable in class ome.model.enums.AdminPrivilege
VALUE - Static variable in class ome.model.enums.ArcType
VALUE - Static variable in class ome.model.enums.Binning
VALUE - Static variable in class ome.model.enums.ChecksumAlgorithm
VALUE - Static variable in class ome.model.enums.ContrastMethod
VALUE - Static variable in class ome.model.enums.Correction
VALUE - Static variable in class ome.model.enums.DetectorType
VALUE - Static variable in class ome.model.enums.DimensionOrder
VALUE - Static variable in class ome.model.enums.EventType
VALUE - Static variable in class ome.model.enums.ExperimentType
VALUE - Static variable in class ome.model.enums.Family
VALUE - Static variable in class ome.model.enums.FilamentType
VALUE - Static variable in class ome.model.enums.FilterType
VALUE - Static variable in class ome.model.enums.Format
VALUE - Static variable in class ome.model.enums.Illumination
VALUE - Static variable in class ome.model.enums.Immersion
VALUE - Static variable in class ome.model.enums.LaserMedium
VALUE - Static variable in class ome.model.enums.LaserType
VALUE - Static variable in class ome.model.enums.Medium
VALUE - Static variable in class ome.model.enums.MicrobeamManipulationType
VALUE - Static variable in class ome.model.enums.MicroscopeType
VALUE - Static variable in class ome.model.enums.PhotometricInterpretation
VALUE - Static variable in class ome.model.enums.PixelsType
VALUE - Static variable in class ome.model.enums.ProjectionAxis
VALUE - Static variable in class ome.model.enums.ProjectionType
VALUE - Static variable in class ome.model.enums.Pulse
VALUE - Static variable in class ome.model.enums.RenderingModel
VALUE - Static variable in class ome.model.jobs.JobStatus
VALUE - Static variable in class ome.model.units.ElectricPotential
VALUE - Static variable in class ome.model.units.Frequency
VALUE - Static variable in class ome.model.units.Length
VALUE - Static variable in class ome.model.units.Power
VALUE - Static variable in class ome.model.units.Pressure
VALUE - Static variable in class ome.model.units.Temperature
VALUE - Static variable in class ome.model.units.Time
VALUE_1X1 - Static variable in class ome.model.enums.Binning
VALUE_2X2 - Static variable in class ome.model.enums.Binning
VALUE_4X4 - Static variable in class ome.model.enums.Binning
VALUE_8X8 - Static variable in class ome.model.enums.Binning
VALUE_ACHRO - Static variable in class ome.model.enums.Correction
VALUE_ACHROMAT - Static variable in class ome.model.enums.Correction
VALUE_ADLER_32 - Static variable in class ome.model.enums.ChecksumAlgorithm
VALUE_AG - Static variable in class ome.model.enums.LaserMedium
VALUE_AIR - Static variable in class ome.model.enums.Immersion
VALUE_AIR - Static variable in class ome.model.enums.Medium
VALUE_ALEXANDRITE - Static variable in class ome.model.enums.LaserMedium
VALUE_ANALOG_VIDEO - Static variable in class ome.model.enums.DetectorType
VALUE_APD - Static variable in class ome.model.enums.DetectorType
VALUE_APO - Static variable in class ome.model.enums.Correction
VALUE_AR - Static variable in class ome.model.enums.LaserMedium
VALUE_AR_CL - Static variable in class ome.model.enums.LaserMedium
VALUE_AR_FL - Static variable in class ome.model.enums.LaserMedium
VALUE_ARGB - Static variable in class ome.model.enums.PhotometricInterpretation
VALUE_BAND_PASS - Static variable in class ome.model.enums.FilterType
VALUE_BIT - Static variable in class ome.model.enums.PixelsType
VALUE_BRIGHT_FIELD - Static variable in class ome.model.enums.AcquisitionMode
VALUE_BRIGHTFIELD - Static variable in class ome.model.enums.ContrastMethod
VALUE_CANCELLED - Static variable in class ome.model.jobs.JobStatus
VALUE_CCD - Static variable in class ome.model.enums.DetectorType
VALUE_CHGRP - Static variable in class ome.model.enums.AdminPrivilege
VALUE_CHOWN - Static variable in class ome.model.enums.AdminPrivilege
VALUE_CMOS - Static variable in class ome.model.enums.DetectorType
VALUE_CMYK - Static variable in class ome.model.enums.PhotometricInterpretation
VALUE_CO - Static variable in class ome.model.enums.LaserMedium
VALUE_CO2 - Static variable in class ome.model.enums.LaserMedium
VALUE_COLOCALIZATION - Static variable in class ome.model.enums.ExperimentType
VALUE_COLOR_MAP - Static variable in class ome.model.enums.PhotometricInterpretation
VALUE_COMPLEX - Static variable in class ome.model.enums.PixelsType
VALUE_CORRELATION_SPECTROSCOPY - Static variable in class ome.model.enums.DetectorType
VALUE_COUMARIN_C30 - Static variable in class ome.model.enums.LaserMedium
VALUE_CRC_32 - Static variable in class ome.model.enums.ChecksumAlgorithm
VALUE_CU - Static variable in class ome.model.enums.LaserMedium
VALUE_CW - Static variable in class ome.model.enums.Pulse
VALUE_DARKFIELD - Static variable in class ome.model.enums.ContrastMethod
VALUE_DELETE_FILE - Static variable in class ome.model.enums.AdminPrivilege
VALUE_DELETE_MANAGED_REPO - Static variable in class ome.model.enums.AdminPrivilege
VALUE_DELETE_OWNED - Static variable in class ome.model.enums.AdminPrivilege
VALUE_DELETE_SCRIPT_REPO - Static variable in class ome.model.enums.AdminPrivilege
VALUE_DIC - Static variable in class ome.model.enums.ContrastMethod
VALUE_DICHROIC - Static variable in class ome.model.enums.FilterType
VALUE_DISSECTION - Static variable in class ome.model.enums.MicroscopeType
VALUE_DOUBLE - Static variable in class ome.model.enums.PixelsType
VALUE_DOUBLE_COMPLEX - Static variable in class ome.model.enums.PixelsType
VALUE_DYE - Static variable in class ome.model.enums.LaserType
VALUE_EBCCD - Static variable in class ome.model.enums.DetectorType
VALUE_ELECTROPHYSIOLOGY - Static variable in class ome.model.enums.ExperimentType
VALUE_ELECTROPHYSIOLOGY - Static variable in class ome.model.enums.MicroscopeType
VALUE_EM_CCD - Static variable in class ome.model.enums.DetectorType
VALUE_EMINUS - Static variable in class ome.model.enums.LaserMedium
VALUE_EPIFLUORESCENCE - Static variable in class ome.model.enums.Illumination
VALUE_ER_GLASS - Static variable in class ome.model.enums.LaserMedium
VALUE_ER_YAG - Static variable in class ome.model.enums.LaserMedium
VALUE_ERROR - Static variable in class ome.model.jobs.JobStatus
VALUE_EXCIMER - Static variable in class ome.model.enums.LaserType
VALUE_EXPONENTIAL - Static variable in class ome.model.enums.Family
VALUE_FILE_SIZE_64 - Static variable in class ome.model.enums.ChecksumAlgorithm
VALUE_FINISHED - Static variable in class ome.model.jobs.JobStatus
VALUE_FISH - Static variable in class ome.model.enums.ExperimentType
VALUE_FL - Static variable in class ome.model.enums.Correction
VALUE_FLIP - Static variable in class ome.model.enums.MicrobeamManipulationType
VALUE_FLOAT - Static variable in class ome.model.enums.PixelsType
VALUE_FLUAR - Static variable in class ome.model.enums.Correction
VALUE_FLUOR - Static variable in class ome.model.enums.Correction
VALUE_FLUORESCENCE - Static variable in class ome.model.enums.ContrastMethod
VALUE_FLUORESCENCE_CORRELATION_SPECTROSCOPY - Static variable in class ome.model.enums.AcquisitionMode
VALUE_FLUORESCENCE_LIFETIME - Static variable in class ome.model.enums.AcquisitionMode
VALUE_FLUORESCENCE_LIFETIME - Static variable in class ome.model.enums.ExperimentType
VALUE_FLUOTAR - Static variable in class ome.model.enums.Correction
VALUE_FOUR_DPLUS - Static variable in class ome.model.enums.ExperimentType
VALUE_FP - Static variable in class ome.model.enums.ExperimentType
VALUE_FRAP - Static variable in class ome.model.enums.MicrobeamManipulationType
VALUE_FREE_ELECTRON - Static variable in class ome.model.enums.LaserType
VALUE_FRET - Static variable in class ome.model.enums.ExperimentType
VALUE_FSM - Static variable in class ome.model.enums.AcquisitionMode
VALUE_FTIR - Static variable in class ome.model.enums.DetectorType
VALUE_FULL_TEXT - Static variable in class ome.model.enums.EventType
VALUE_GA_AL_AS - Static variable in class ome.model.enums.LaserMedium
VALUE_GA_AS - Static variable in class ome.model.enums.LaserMedium
VALUE_GAS - Static variable in class ome.model.enums.LaserType
VALUE_GLYCEROL - Static variable in class ome.model.enums.Immersion
VALUE_GLYCEROL - Static variable in class ome.model.enums.Medium
VALUE_GREYSCALE - Static variable in class ome.model.enums.RenderingModel
VALUE_H2O - Static variable in class ome.model.enums.LaserMedium
VALUE_HALOGEN - Static variable in class ome.model.enums.FilamentType
VALUE_HE_CD - Static variable in class ome.model.enums.LaserMedium
VALUE_HE_NE - Static variable in class ome.model.enums.LaserMedium
VALUE_HFL - Static variable in class ome.model.enums.LaserMedium
VALUE_HG - Static variable in class ome.model.enums.ArcType
VALUE_HG_XE - Static variable in class ome.model.enums.ArcType
VALUE_HO_YAG - Static variable in class ome.model.enums.LaserMedium
VALUE_HO_YLF - Static variable in class ome.model.enums.LaserMedium
VALUE_HOFFMAN_MODULATION - Static variable in class ome.model.enums.ContrastMethod
VALUE_HSV - Static variable in class ome.model.enums.PhotometricInterpretation
VALUE_IMMUNOCYTOCHEMISTRY - Static variable in class ome.model.enums.ExperimentType
VALUE_IMMUNOFLUORESCENCE - Static variable in class ome.model.enums.ExperimentType
VALUE_IMPORT - Static variable in class ome.model.enums.EventType
VALUE_INCANDESCENT - Static variable in class ome.model.enums.FilamentType
VALUE_INT16 - Static variable in class ome.model.enums.PixelsType
VALUE_INT32 - Static variable in class ome.model.enums.PixelsType
VALUE_INT8 - Static variable in class ome.model.enums.PixelsType
VALUE_INTENSIFIED_CCD - Static variable in class ome.model.enums.DetectorType
VALUE_INTERNAL - Static variable in class ome.model.enums.EventType
VALUE_INVERSE_FRAP - Static variable in class ome.model.enums.MicrobeamManipulationType
VALUE_INVERTED - Static variable in class ome.model.enums.MicroscopeType
VALUE_ION_IMAGING - Static variable in class ome.model.enums.ExperimentType
VALUE_KR - Static variable in class ome.model.enums.LaserMedium
VALUE_KR_CL - Static variable in class ome.model.enums.LaserMedium
VALUE_KR_FL - Static variable in class ome.model.enums.LaserMedium
VALUE_LASER_SCANNING_CONFOCAL_MICROSCOPY - Static variable in class ome.model.enums.AcquisitionMode
VALUE_LCM - Static variable in class ome.model.enums.AcquisitionMode
VALUE_LIFETIME_IMAGING - Static variable in class ome.model.enums.DetectorType
VALUE_LINEAR - Static variable in class ome.model.enums.Family
VALUE_LOGARITHMIC - Static variable in class ome.model.enums.Family
VALUE_LONG_PASS - Static variable in class ome.model.enums.FilterType
VALUE_MAXIMUM - Static variable in class ome.model.enums.ProjectionType
VALUE_MD5_128 - Static variable in class ome.model.enums.ChecksumAlgorithm
VALUE_MEAN - Static variable in class ome.model.enums.ProjectionType
VALUE_METAL_VAPOR - Static variable in class ome.model.enums.LaserType
VALUE_MODE_LOCKED - Static variable in class ome.model.enums.Pulse
VALUE_MODIFY_GROUP - Static variable in class ome.model.enums.AdminPrivilege
VALUE_MODIFY_GROUP_MEMBERSHIP - Static variable in class ome.model.enums.AdminPrivilege
VALUE_MODIFY_USER - Static variable in class ome.model.enums.AdminPrivilege
VALUE_MODULO_T - Static variable in class ome.model.enums.ProjectionAxis
VALUE_MODULO_Z - Static variable in class ome.model.enums.ProjectionAxis
VALUE_MONOCHROME - Static variable in class ome.model.enums.PhotometricInterpretation
VALUE_MULTI - Static variable in class ome.model.enums.Immersion
VALUE_MULTI_PASS - Static variable in class ome.model.enums.FilterType
VALUE_MULTI_PHOTON_MICROSCOPY - Static variable in class ome.model.enums.AcquisitionMode
VALUE_MURMUR3_128 - Static variable in class ome.model.enums.ChecksumAlgorithm
VALUE_MURMUR3_32 - Static variable in class ome.model.enums.ChecksumAlgorithm
VALUE_N - Static variable in class ome.model.enums.LaserMedium
VALUE_ND_GLASS - Static variable in class ome.model.enums.LaserMedium
VALUE_ND_YAG - Static variable in class ome.model.enums.LaserMedium
VALUE_NEAR_FIELD_SCANNING_OPTICAL_MICROSCOPY - Static variable in class ome.model.enums.AcquisitionMode
VALUE_NEOFLUAR - Static variable in class ome.model.enums.Correction
VALUE_NEUTRAL_DENSITY - Static variable in class ome.model.enums.FilterType
VALUE_NON_LINEAR - Static variable in class ome.model.enums.Illumination
VALUE_OBLIQUE - Static variable in class ome.model.enums.Illumination
VALUE_OBLIQUE_ILLUMINATION - Static variable in class ome.model.enums.ContrastMethod
VALUE_OIL - Static variable in class ome.model.enums.Immersion
VALUE_OIL - Static variable in class ome.model.enums.Medium
VALUE_OPTICAL_TRAPPING - Static variable in class ome.model.enums.MicrobeamManipulationType
VALUE_OTHER - Static variable in class ome.model.enums.AcquisitionMode
VALUE_OTHER - Static variable in class ome.model.enums.ArcType
VALUE_OTHER - Static variable in class ome.model.enums.ContrastMethod
VALUE_OTHER - Static variable in class ome.model.enums.Correction
VALUE_OTHER - Static variable in class ome.model.enums.DetectorType
VALUE_OTHER - Static variable in class ome.model.enums.ExperimentType
VALUE_OTHER - Static variable in class ome.model.enums.FilamentType
VALUE_OTHER - Static variable in class ome.model.enums.FilterType
VALUE_OTHER - Static variable in class ome.model.enums.Illumination
VALUE_OTHER - Static variable in class ome.model.enums.Immersion
VALUE_OTHER - Static variable in class ome.model.enums.LaserMedium
VALUE_OTHER - Static variable in class ome.model.enums.LaserType
VALUE_OTHER - Static variable in class ome.model.enums.Medium
VALUE_OTHER - Static variable in class ome.model.enums.MicrobeamManipulationType
VALUE_OTHER - Static variable in class ome.model.enums.MicroscopeType
VALUE_OTHER - Static variable in class ome.model.enums.Pulse
VALUE_PALM - Static variable in class ome.model.enums.AcquisitionMode
VALUE_PGIDOCUMENTATION - Static variable in class ome.model.enums.ExperimentType
VALUE_PHASE - Static variable in class ome.model.enums.ContrastMethod
VALUE_PHOTOABLATION - Static variable in class ome.model.enums.MicrobeamManipulationType
VALUE_PHOTOACTIVATION - Static variable in class ome.model.enums.MicrobeamManipulationType
VALUE_PHOTOBLEACHING - Static variable in class ome.model.enums.ExperimentType
VALUE_PHOTODIODE - Static variable in class ome.model.enums.DetectorType
VALUE_PLAN_APO - Static variable in class ome.model.enums.Correction
VALUE_PLAN_FLUOR - Static variable in class ome.model.enums.Correction
VALUE_PMT - Static variable in class ome.model.enums.DetectorType
VALUE_POLARIZED_LIGHT - Static variable in class ome.model.enums.ContrastMethod
VALUE_POLYNOMIAL - Static variable in class ome.model.enums.Family
VALUE_PROCESSING - Static variable in class ome.model.enums.EventType
VALUE_QSWITCHED - Static variable in class ome.model.enums.Pulse
VALUE_QUEUED - Static variable in class ome.model.jobs.JobStatus
VALUE_READ_SESSION - Static variable in class ome.model.enums.AdminPrivilege
VALUE_REPETITIVE - Static variable in class ome.model.enums.Pulse
VALUE_REQUEUED - Static variable in class ome.model.jobs.JobStatus
VALUE_RESUBMITTED - Static variable in class ome.model.jobs.JobStatus
VALUE_RGB - Static variable in class ome.model.enums.PhotometricInterpretation
VALUE_RGB - Static variable in class ome.model.enums.RenderingModel
VALUE_RHODAMINE6G - Static variable in class ome.model.enums.LaserMedium
VALUE_RUBY - Static variable in class ome.model.enums.LaserMedium
VALUE_RUNNING - Static variable in class ome.model.jobs.JobStatus
VALUE_SCREEN - Static variable in class ome.model.enums.ExperimentType
VALUE_SECOND_HARMONIC_GENERATION_IMAGING - Static variable in class ome.model.enums.AcquisitionMode
VALUE_SEMICONDUCTOR - Static variable in class ome.model.enums.LaserType
VALUE_SESSIONS - Static variable in class ome.model.enums.EventType
VALUE_SHA1_160 - Static variable in class ome.model.enums.ChecksumAlgorithm
VALUE_SHOOLA - Static variable in class ome.model.enums.EventType
VALUE_SHORT_PASS - Static variable in class ome.model.enums.FilterType
VALUE_SINGLE - Static variable in class ome.model.enums.Pulse
VALUE_SINGLE_MOLECULE_IMAGING - Static variable in class ome.model.enums.AcquisitionMode
VALUE_SLIT_SCAN_CONFOCAL - Static variable in class ome.model.enums.AcquisitionMode
VALUE_SOLID_STATE - Static variable in class ome.model.enums.LaserType
VALUE_SPECTRAL_IMAGING - Static variable in class ome.model.enums.AcquisitionMode
VALUE_SPECTRAL_IMAGING - Static variable in class ome.model.enums.ExperimentType
VALUE_SPECTROSCOPY - Static variable in class ome.model.enums.DetectorType
VALUE_SPIM - Static variable in class ome.model.enums.AcquisitionMode
VALUE_SPINNING_DISK_CONFOCAL - Static variable in class ome.model.enums.AcquisitionMode
VALUE_STED - Static variable in class ome.model.enums.AcquisitionMode
VALUE_STORM - Static variable in class ome.model.enums.AcquisitionMode
VALUE_STRUCTURED_ILLUMINATION - Static variable in class ome.model.enums.AcquisitionMode
VALUE_SUBMITTED - Static variable in class ome.model.jobs.JobStatus
VALUE_SUDO - Static variable in class ome.model.enums.AdminPrivilege
VALUE_SUM - Static variable in class ome.model.enums.ProjectionType
VALUE_SUPER_FLUOR - Static variable in class ome.model.enums.Correction
VALUE_SWEPT_FIELD_CONFOCAL - Static variable in class ome.model.enums.AcquisitionMode
VALUE_T - Static variable in class ome.model.enums.ProjectionAxis
VALUE_TASK - Static variable in class ome.model.enums.EventType
VALUE_TEST - Static variable in class ome.model.enums.EventType
VALUE_TI_SAPPHIRE - Static variable in class ome.model.enums.LaserMedium
VALUE_TIME_LAPSE - Static variable in class ome.model.enums.ExperimentType
VALUE_TIRF - Static variable in class ome.model.enums.AcquisitionMode
VALUE_TOTAL_INTERNAL_REFLECTION - Static variable in class ome.model.enums.AcquisitionMode
VALUE_TRANSMITTED - Static variable in class ome.model.enums.Illumination
VALUE_TUNEABLE - Static variable in class ome.model.enums.FilterType
VALUE_UINT16 - Static variable in class ome.model.enums.PixelsType
VALUE_UINT32 - Static variable in class ome.model.enums.PixelsType
VALUE_UINT8 - Static variable in class ome.model.enums.PixelsType
VALUE_UNCAGING - Static variable in class ome.model.enums.MicrobeamManipulationType
VALUE_UNKNOWN - Static variable in class ome.model.enums.AcquisitionMode
VALUE_UNKNOWN - Static variable in class ome.model.enums.ArcType
VALUE_UNKNOWN - Static variable in class ome.model.enums.ContrastMethod
VALUE_UNKNOWN - Static variable in class ome.model.enums.Correction
VALUE_UNKNOWN - Static variable in class ome.model.enums.DetectorType
VALUE_UNKNOWN - Static variable in class ome.model.enums.ExperimentType
VALUE_UNKNOWN - Static variable in class ome.model.enums.FilamentType
VALUE_UNKNOWN - Static variable in class ome.model.enums.FilterType
VALUE_UNKNOWN - Static variable in class ome.model.enums.Illumination
VALUE_UNKNOWN - Static variable in class ome.model.enums.Immersion
VALUE_UNKNOWN - Static variable in class ome.model.enums.LaserMedium
VALUE_UNKNOWN - Static variable in class ome.model.enums.LaserType
VALUE_UNKNOWN - Static variable in class ome.model.enums.Medium
VALUE_UNKNOWN - Static variable in class ome.model.enums.MicrobeamManipulationType
VALUE_UNKNOWN - Static variable in class ome.model.enums.MicroscopeType
VALUE_UNKNOWN - Static variable in class ome.model.enums.Pulse
VALUE_UPRIGHT - Static variable in class ome.model.enums.MicroscopeType
VALUE_USER - Static variable in class ome.model.enums.EventType
VALUE_UV - Static variable in class ome.model.enums.Correction
VALUE_VIOLET_CORRECTED - Static variable in class ome.model.enums.Correction
VALUE_WAITING - Static variable in class ome.model.jobs.JobStatus
VALUE_WATER - Static variable in class ome.model.enums.Immersion
VALUE_WATER - Static variable in class ome.model.enums.Medium
VALUE_WATER_DIPPING - Static variable in class ome.model.enums.Immersion
VALUE_WIDE_FIELD - Static variable in class ome.model.enums.AcquisitionMode
VALUE_WRITE_FILE - Static variable in class ome.model.enums.AdminPrivilege
VALUE_WRITE_MANAGED_REPO - Static variable in class ome.model.enums.AdminPrivilege
VALUE_WRITE_OWNED - Static variable in class ome.model.enums.AdminPrivilege
VALUE_WRITE_SCRIPT_REPO - Static variable in class ome.model.enums.AdminPrivilege
VALUE_XE - Static variable in class ome.model.enums.ArcType
VALUE_XE - Static variable in class ome.model.enums.LaserMedium
VALUE_XE_BR - Static variable in class ome.model.enums.LaserMedium
VALUE_XE_CL - Static variable in class ome.model.enums.LaserMedium
VALUE_XE_FL - Static variable in class ome.model.enums.LaserMedium
VALUE_XYCTZ - Static variable in class ome.model.enums.DimensionOrder
VALUE_XYCZT - Static variable in class ome.model.enums.DimensionOrder
VALUE_XYTCZ - Static variable in class ome.model.enums.DimensionOrder
VALUE_XYTZC - Static variable in class ome.model.enums.DimensionOrder
VALUE_XYZCT - Static variable in class ome.model.enums.DimensionOrder
VALUE_XYZTC - Static variable in class ome.model.enums.DimensionOrder
VALUE_Z - Static variable in class ome.model.enums.ProjectionAxis
valueOf(String) - Static method in enum ome.model.enums.UnitsElectricPotential: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsFrequency: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsLength: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsPower: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsPressure: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsTemperature: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsTime: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.internal.Permissions.Flag: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.internal.Permissions.Right: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.internal.Permissions.Role: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.units.UNITS: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.util.PrivilegedStringTypeDescriptor.Filter: Returns the enum constant of this type with the specified name.
values() - Static method in enum ome.model.enums.UnitsElectricPotential: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsFrequency: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsLength: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsPower: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsPressure: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsTemperature: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsTime: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.internal.Permissions.Flag: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.internal.Permissions.Right: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.internal.Permissions.Role: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.units.UNITS: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.util.PrivilegedStringTypeDescriptor.Filter: Returns an array containing the constants of this enum type, in the order they are declared.
version - Variable in class ome.model.acquisition.Detector
version - Variable in class ome.model.acquisition.DetectorSettings
version - Variable in class ome.model.acquisition.Dichroic
version - Variable in class ome.model.acquisition.Filter
version - Variable in class ome.model.acquisition.FilterSet
version - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
version - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
version - Variable in class ome.model.acquisition.ImagingEnvironment
version - Variable in class ome.model.acquisition.Instrument
version - Variable in class ome.model.acquisition.LightPath
version - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
version - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
version - Variable in class ome.model.acquisition.LightSettings
version - Variable in class ome.model.acquisition.LightSource
version - Variable in class ome.model.acquisition.Microscope
version - Variable in class ome.model.acquisition.Objective
version - Variable in class ome.model.acquisition.ObjectiveSettings
version - Variable in class ome.model.acquisition.OTF
version - Variable in class ome.model.acquisition.StageLabel
version - Variable in class ome.model.acquisition.TransmittanceRange
version - Variable in class ome.model.annotations.Annotation
version - Variable in class ome.model.annotations.AnnotationAnnotationLink
version - Variable in class ome.model.annotations.ChannelAnnotationLink
version - Variable in class ome.model.annotations.DatasetAnnotationLink
version - Variable in class ome.model.annotations.DetectorAnnotationLink
version - Variable in class ome.model.annotations.DichroicAnnotationLink
version - Variable in class ome.model.annotations.ExperimenterAnnotationLink
version - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
version - Variable in class ome.model.annotations.FilesetAnnotationLink
version - Variable in class ome.model.annotations.FilterAnnotationLink
version - Variable in class ome.model.annotations.FolderAnnotationLink
version - Variable in class ome.model.annotations.ImageAnnotationLink
version - Variable in class ome.model.annotations.InstrumentAnnotationLink
version - Variable in class ome.model.annotations.LightPathAnnotationLink
version - Variable in class ome.model.annotations.LightSourceAnnotationLink
version - Variable in class ome.model.annotations.NamespaceAnnotationLink
version - Variable in class ome.model.annotations.NodeAnnotationLink
version - Variable in class ome.model.annotations.ObjectiveAnnotationLink
version - Variable in class ome.model.annotations.OriginalFileAnnotationLink
version - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
version - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
version - Variable in class ome.model.annotations.PlateAnnotationLink
version - Variable in class ome.model.annotations.ProjectAnnotationLink
version - Variable in class ome.model.annotations.ReagentAnnotationLink
version - Variable in class ome.model.annotations.RoiAnnotationLink
version - Variable in class ome.model.annotations.ScreenAnnotationLink
version - Variable in class ome.model.annotations.SessionAnnotationLink
version - Variable in class ome.model.annotations.ShapeAnnotationLink
version - Variable in class ome.model.annotations.WellAnnotationLink
version - Variable in class ome.model.containers.Dataset
version - Variable in class ome.model.containers.DatasetImageLink
version - Variable in class ome.model.containers.Folder
version - Variable in class ome.model.containers.FolderImageLink
version - Variable in class ome.model.containers.FolderRoiLink
version - Variable in class ome.model.containers.Project
version - Variable in class ome.model.containers.ProjectDatasetLink
version - Variable in class ome.model.core.Channel
version - Variable in class ome.model.core.Image
version - Variable in class ome.model.core.LogicalChannel
version - Variable in class ome.model.core.OriginalFile
version - Variable in class ome.model.core.Pixels
version - Variable in class ome.model.core.PixelsOriginalFileMap
version - Variable in class ome.model.core.PlaneInfo
version - Variable in class ome.model.display.ChannelBinding
version - Variable in class ome.model.display.CodomainMapContext
version - Variable in class ome.model.display.ProjectionDef
version - Variable in class ome.model.display.QuantumDef
version - Variable in class ome.model.display.RenderingDef
version - Variable in class ome.model.display.Thumbnail
version - Variable in class ome.model.experiment.Experiment
version - Variable in class ome.model.experiment.MicrobeamManipulation
version - Variable in class ome.model.fs.Fileset
version - Variable in class ome.model.fs.FilesetEntry
version - Variable in class ome.model.fs.FilesetJobLink
version - Variable in class ome.model.internal.Link
version - Variable in class ome.model.jobs.Job
version - Variable in class ome.model.jobs.JobOriginalFileLink
version - Variable in class ome.model.meta.Experimenter
version - Variable in class ome.model.meta.ExperimenterGroup
version - Variable in class ome.model.meta.GroupExperimenterMap
version - Variable in class ome.model.meta.Namespace
version - Variable in class ome.model.meta.Node
version - Variable in class ome.model.meta.Session
version - Variable in class ome.model.meta.ShareMember
version - Variable in class ome.model.roi.AffineTransform
version - Variable in class ome.model.roi.Roi
version - Variable in class ome.model.roi.Shape
version - Variable in class ome.model.screen.Plate
version - Variable in class ome.model.screen.PlateAcquisition
version - Variable in class ome.model.screen.Reagent
version - Variable in class ome.model.screen.Screen
version - Variable in class ome.model.screen.ScreenPlateLink
version - Variable in class ome.model.screen.Well
version - Variable in class ome.model.screen.WellReagentLink
version - Variable in class ome.model.screen.WellSample
version - Variable in class ome.model.stats.StatsInfo
VERSION - Static variable in class ome.model.acquisition.Detector
VERSION - Static variable in class ome.model.acquisition.DetectorSettings
VERSION - Static variable in class ome.model.acquisition.Dichroic
VERSION - Static variable in class ome.model.acquisition.Filter
VERSION - Static variable in class ome.model.acquisition.FilterSet
VERSION - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
VERSION - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
VERSION - Static variable in class ome.model.acquisition.ImagingEnvironment
VERSION - Static variable in class ome.model.acquisition.Instrument
VERSION - Static variable in class ome.model.acquisition.LightPath
VERSION - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
VERSION - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
VERSION - Static variable in class ome.model.acquisition.LightSettings
VERSION - Static variable in class ome.model.acquisition.LightSource
VERSION - Static variable in class ome.model.acquisition.Microscope
VERSION - Static variable in class ome.model.acquisition.Objective
VERSION - Static variable in class ome.model.acquisition.ObjectiveSettings
VERSION - Static variable in class ome.model.acquisition.OTF
VERSION - Static variable in class ome.model.acquisition.StageLabel
VERSION - Static variable in class ome.model.acquisition.TransmittanceRange
VERSION - Static variable in class ome.model.annotations.Annotation
VERSION - Static variable in class ome.model.annotations.AnnotationAnnotationLink
VERSION - Static variable in class ome.model.annotations.ChannelAnnotationLink
VERSION - Static variable in class ome.model.annotations.DatasetAnnotationLink
VERSION - Static variable in class ome.model.annotations.DetectorAnnotationLink
VERSION - Static variable in class ome.model.annotations.DichroicAnnotationLink
VERSION - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
VERSION - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
VERSION - Static variable in class ome.model.annotations.FilesetAnnotationLink
VERSION - Static variable in class ome.model.annotations.FilterAnnotationLink
VERSION - Static variable in class ome.model.annotations.FolderAnnotationLink
VERSION - Static variable in class ome.model.annotations.ImageAnnotationLink
VERSION - Static variable in class ome.model.annotations.InstrumentAnnotationLink
VERSION - Static variable in class ome.model.annotations.LightPathAnnotationLink
VERSION - Static variable in class ome.model.annotations.LightSourceAnnotationLink
VERSION - Static variable in class ome.model.annotations.NamespaceAnnotationLink
VERSION - Static variable in class ome.model.annotations.NodeAnnotationLink
VERSION - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
VERSION - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
VERSION - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
VERSION - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
VERSION - Static variable in class ome.model.annotations.PlateAnnotationLink
VERSION - Static variable in class ome.model.annotations.ProjectAnnotationLink
VERSION - Static variable in class ome.model.annotations.ReagentAnnotationLink
VERSION - Static variable in class ome.model.annotations.RoiAnnotationLink
VERSION - Static variable in class ome.model.annotations.ScreenAnnotationLink
VERSION - Static variable in class ome.model.annotations.SessionAnnotationLink
VERSION - Static variable in class ome.model.annotations.ShapeAnnotationLink
VERSION - Static variable in class ome.model.annotations.WellAnnotationLink
VERSION - Static variable in class ome.model.containers.Dataset
VERSION - Static variable in class ome.model.containers.DatasetImageLink
VERSION - Static variable in class ome.model.containers.Folder
VERSION - Static variable in class ome.model.containers.FolderImageLink
VERSION - Static variable in class ome.model.containers.FolderRoiLink
VERSION - Static variable in class ome.model.containers.Project
VERSION - Static variable in class ome.model.containers.ProjectDatasetLink
VERSION - Static variable in class ome.model.core.Channel
VERSION - Static variable in class ome.model.core.Image
VERSION - Static variable in class ome.model.core.LogicalChannel
VERSION - Static variable in class ome.model.core.OriginalFile
VERSION - Static variable in class ome.model.core.Pixels
VERSION - Static variable in class ome.model.core.PixelsOriginalFileMap
VERSION - Static variable in class ome.model.core.PlaneInfo
VERSION - Static variable in class ome.model.display.ChannelBinding
VERSION - Static variable in class ome.model.display.CodomainMapContext
VERSION - Static variable in class ome.model.display.ProjectionDef
VERSION - Static variable in class ome.model.display.QuantumDef
VERSION - Static variable in class ome.model.display.RenderingDef
VERSION - Static variable in class ome.model.display.Thumbnail
VERSION - Static variable in class ome.model.experiment.Experiment
VERSION - Static variable in class ome.model.experiment.MicrobeamManipulation
VERSION - Static variable in class ome.model.fs.Fileset
VERSION - Static variable in class ome.model.fs.FilesetEntry
VERSION - Static variable in class ome.model.fs.FilesetJobLink
VERSION - Static variable in class ome.model.internal.Link
VERSION - Static variable in class ome.model.jobs.Job
VERSION - Static variable in class ome.model.jobs.JobOriginalFileLink
VERSION - Static variable in class ome.model.meta.Experimenter
VERSION - Static variable in class ome.model.meta.ExperimenterGroup
VERSION - Static variable in class ome.model.meta.GroupExperimenterMap
VERSION - Static variable in class ome.model.meta.Namespace
VERSION - Static variable in class ome.model.meta.Node
VERSION - Static variable in class ome.model.meta.Session
VERSION - Static variable in class ome.model.meta.ShareMember
VERSION - Static variable in class ome.model.roi.AffineTransform
VERSION - Static variable in class ome.model.roi.Roi
VERSION - Static variable in class ome.model.roi.Shape
VERSION - Static variable in class ome.model.screen.Plate
VERSION - Static variable in class ome.model.screen.PlateAcquisition
VERSION - Static variable in class ome.model.screen.Reagent
VERSION - Static variable in class ome.model.screen.Screen
VERSION - Static variable in class ome.model.screen.ScreenPlateLink
VERSION - Static variable in class ome.model.screen.Well
VERSION - Static variable in class ome.model.screen.WellReagentLink
VERSION - Static variable in class ome.model.screen.WellSample
VERSION - Static variable in class ome.model.stats.StatsInfo
versionInfo - Variable in class ome.model.jobs.MetadataImportJob
versionInfo - Variable in class ome.model.jobs.UploadJob
VERSIONINFO - Static variable in class ome.model.jobs.MetadataImportJob
VERSIONINFO - Static variable in class ome.model.jobs.UploadJob
VOLT - ome.model.enums.UnitsElectricPotential
voltage - Variable in class ome.model.acquisition.Detector
voltage - Variable in class ome.model.acquisition.DetectorSettings
VOLTAGE - Static variable in class ome.model.acquisition.Detector
VOLTAGE - Static variable in class ome.model.acquisition.DetectorSettings

W

WATT - ome.model.enums.UnitsPower
waveIncrement - Variable in class ome.model.core.Pixels
WAVEINCREMENT - Static variable in class ome.model.core.Pixels
wavelength - Variable in class ome.model.acquisition.Laser
wavelength - Variable in class ome.model.acquisition.LightSettings
WAVELENGTH - Static variable in class ome.model.acquisition.Laser
WAVELENGTH - Static variable in class ome.model.acquisition.LightSettings
waveRendering - Variable in class ome.model.display.RenderingDef
WAVERENDERING - Static variable in class ome.model.display.RenderingDef
waveStart - Variable in class ome.model.core.Pixels
WAVESTART - Static variable in class ome.model.core.Pixels
well - Variable in class ome.model.screen.WellSample
Well - Class in ome.model.screen: These filter definitions are used by the security system to eliminate non-readable objects from queries.
Well() - Constructor for class ome.model.screen.Well
Well(Long) - Constructor for class ome.model.screen.Well
Well(Long, boolean) - Constructor for class ome.model.screen.Well: Main constructor.
Well(Plate) - Constructor for class ome.model.screen.Well
WELL - Static variable in class ome.model.screen.WellSample
Well.Details - Class in ome.model.screen
WellAnnotationLink - Class in ome.model.annotations: These filter definitions are used by the security system to eliminate non-readable objects from queries.
WellAnnotationLink() - Constructor for class ome.model.annotations.WellAnnotationLink
WellAnnotationLink(Long) - Constructor for class ome.model.annotations.WellAnnotationLink
WellAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.WellAnnotationLink: Main constructor.
WellAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.WellAnnotationLink
WellAnnotationLink.Details - Class in ome.model.annotations
wellLinks - Variable in class ome.model.screen.Reagent
WELLLINKS - Static variable in class ome.model.screen.Reagent
WELLLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Reagent
wellOriginX - Variable in class ome.model.screen.Plate
WELLORIGINX - Static variable in class ome.model.screen.Plate
wellOriginY - Variable in class ome.model.screen.Plate
WELLORIGINY - Static variable in class ome.model.screen.Plate
WellReagentLink - Class in ome.model.screen: These filter definitions are used by the security system to eliminate non-readable objects from queries.
WellReagentLink() - Constructor for class ome.model.screen.WellReagentLink
WellReagentLink(Long) - Constructor for class ome.model.screen.WellReagentLink
WellReagentLink(Long, boolean) - Constructor for class ome.model.screen.WellReagentLink: Main constructor.
WellReagentLink(IObject, IObject) - Constructor for class ome.model.screen.WellReagentLink
WellReagentLink.Details - Class in ome.model.screen
wells - Variable in class ome.model.screen.Plate
WELLS - Static variable in class ome.model.screen.Plate
wellSample - Variable in class ome.model.screen.PlateAcquisition
WellSample - Class in ome.model.screen: These filter definitions are used by the security system to eliminate non-readable objects from queries.
WellSample() - Constructor for class ome.model.screen.WellSample
WellSample(Long) - Constructor for class ome.model.screen.WellSample
WellSample(Long, boolean) - Constructor for class ome.model.screen.WellSample: Main constructor.
WellSample(Well, Image) - Constructor for class ome.model.screen.WellSample
WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
WellSample.Details - Class in ome.model.screen
wellSamples - Variable in class ome.model.core.Image
wellSamples - Variable in class ome.model.screen.Well
WELLSAMPLES - Static variable in class ome.model.core.Image
WELLSAMPLES - Static variable in class ome.model.screen.Well
width - Variable in class ome.model.roi.Mask
width - Variable in class ome.model.roi.Rectangle
WIDTH - Static variable in class ome.model.roi.Mask
WIDTH - Static variable in class ome.model.roi.Rectangle
workingDistance - Variable in class ome.model.acquisition.Objective
WORKINGDISTANCE - Static variable in class ome.model.acquisition.Objective
WORLD - ome.model.internal.Permissions.Role
WORLD_IMMUTABLE - Static variable in class ome.model.internal.Permissions: R_R_R_ : all can only read
WORLD_WRITEABLE - Static variable in class ome.model.internal.Permissions: RWRWRW : everyone can read and write
wrap(X, WrapperOptions) - Method in class ome.util.PrivilegedStringTypeDescriptor
WRITE - ome.model.internal.Permissions.Right

X

x - Variable in class ome.model.roi.Ellipse
x - Variable in class ome.model.roi.Label
x - Variable in class ome.model.roi.Mask
x - Variable in class ome.model.roi.Point
x - Variable in class ome.model.roi.Rectangle
X - Static variable in class ome.model.roi.Ellipse
X - Static variable in class ome.model.roi.Label
X - Static variable in class ome.model.roi.Mask
X - Static variable in class ome.model.roi.Point
X - Static variable in class ome.model.roi.Rectangle
x1 - Variable in class ome.model.roi.Line
X1 - Static variable in class ome.model.roi.Line
x2 - Variable in class ome.model.roi.Line
X2 - Static variable in class ome.model.roi.Line
xend - Variable in class ome.model.display.ContrastStretchingContext
XEND - Static variable in class ome.model.display.ContrastStretchingContext
XmlAnnotation - Class in ome.model.annotations
XmlAnnotation() - Constructor for class ome.model.annotations.XmlAnnotation
XmlAnnotation(Long) - Constructor for class ome.model.annotations.XmlAnnotation
XmlAnnotation(Long, boolean) - Constructor for class ome.model.annotations.XmlAnnotation: Main constructor.
xstart - Variable in class ome.model.display.ContrastStretchingContext
XSTART - Static variable in class ome.model.display.ContrastStretchingContext

Y

y - Variable in class ome.model.roi.Ellipse
y - Variable in class ome.model.roi.Label
y - Variable in class ome.model.roi.Mask
y - Variable in class ome.model.roi.Point
y - Variable in class ome.model.roi.Rectangle
Y - Static variable in class ome.model.roi.Ellipse
Y - Static variable in class ome.model.roi.Label
Y - Static variable in class ome.model.roi.Mask
Y - Static variable in class ome.model.roi.Point
Y - Static variable in class ome.model.roi.Rectangle
y1 - Variable in class ome.model.roi.Line
Y1 - Static variable in class ome.model.roi.Line
y2 - Variable in class ome.model.roi.Line
Y2 - Static variable in class ome.model.roi.Line
YARD - ome.model.enums.UnitsLength
yend - Variable in class ome.model.display.ContrastStretchingContext
YEND - Static variable in class ome.model.display.ContrastStretchingContext
YOCTOHERTZ - ome.model.enums.UnitsFrequency
YOCTOMETER - ome.model.enums.UnitsLength
YOCTOPASCAL - ome.model.enums.UnitsPressure
YOCTOSECOND - ome.model.enums.UnitsTime
YOCTOVOLT - ome.model.enums.UnitsElectricPotential
YOCTOWATT - ome.model.enums.UnitsPower
YOTTAHERTZ - ome.model.enums.UnitsFrequency
YOTTAMETER - ome.model.enums.UnitsLength
YOTTAPASCAL - ome.model.enums.UnitsPressure
YOTTASECOND - ome.model.enums.UnitsTime
YOTTAVOLT - ome.model.enums.UnitsElectricPotential
YOTTAWATT - ome.model.enums.UnitsPower
ystart - Variable in class ome.model.display.ContrastStretchingContext
YSTART - Static variable in class ome.model.display.ContrastStretchingContext

Z

ZEPTOHERTZ - ome.model.enums.UnitsFrequency
ZEPTOMETER - ome.model.enums.UnitsLength
ZEPTOPASCAL - ome.model.enums.UnitsPressure
ZEPTOSECOND - ome.model.enums.UnitsTime
ZEPTOVOLT - ome.model.enums.UnitsElectricPotential
ZEPTOWATT - ome.model.enums.UnitsPower
ZETTAHERTZ - ome.model.enums.UnitsFrequency
ZETTAMETER - ome.model.enums.UnitsLength
ZETTAPASCAL - ome.model.enums.UnitsPressure
ZETTASECOND - ome.model.enums.UnitsTime
ZETTAVOLT - ome.model.enums.UnitsElectricPotential
ZETTAWATT - ome.model.enums.UnitsPower
zoom - Variable in class ome.model.acquisition.Detector
zoom - Variable in class ome.model.acquisition.DetectorSettings
ZOOM - Static variable in class ome.model.acquisition.Detector
ZOOM - Static variable in class ome.model.acquisition.DetectorSettings

_

_cache - Variable in class ome.util.ContextFilter
_context - Variable in class ome.model.internal.Details
_context - Variable in class ome.util.ContextFilter
_creation - Variable in class ome.model.internal.Details
_dynamicFields - Variable in class ome.model.acquisition.Detector
_dynamicFields - Variable in class ome.model.acquisition.DetectorSettings
_dynamicFields - Variable in class ome.model.acquisition.Dichroic
_dynamicFields - Variable in class ome.model.acquisition.Filter
_dynamicFields - Variable in class ome.model.acquisition.FilterSet
_dynamicFields - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
_dynamicFields - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
_dynamicFields - Variable in class ome.model.acquisition.ImagingEnvironment
_dynamicFields - Variable in class ome.model.acquisition.Instrument
_dynamicFields - Variable in class ome.model.acquisition.LightPath
_dynamicFields - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
_dynamicFields - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
_dynamicFields - Variable in class ome.model.acquisition.LightSettings
_dynamicFields - Variable in class ome.model.acquisition.LightSource
_dynamicFields - Variable in class ome.model.acquisition.Microscope
_dynamicFields - Variable in class ome.model.acquisition.Objective
_dynamicFields - Variable in class ome.model.acquisition.ObjectiveSettings
_dynamicFields - Variable in class ome.model.acquisition.OTF
_dynamicFields - Variable in class ome.model.acquisition.StageLabel
_dynamicFields - Variable in class ome.model.acquisition.TransmittanceRange
_dynamicFields - Variable in class ome.model.annotations.Annotation
_dynamicFields - Variable in class ome.model.annotations.AnnotationAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.ChannelAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.DatasetAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.DetectorAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.DichroicAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.ExperimenterAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.FilesetAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.FilterAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.FolderAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.ImageAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.InstrumentAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.LightPathAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.LightSourceAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.NamespaceAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.NodeAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.ObjectiveAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.OriginalFileAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.PlateAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.ProjectAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.ReagentAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.RoiAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.ScreenAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.SessionAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.ShapeAnnotationLink
_dynamicFields - Variable in class ome.model.annotations.WellAnnotationLink
_dynamicFields - Variable in class ome.model.containers.Dataset
_dynamicFields - Variable in class ome.model.containers.DatasetImageLink
_dynamicFields - Variable in class ome.model.containers.Folder
_dynamicFields - Variable in class ome.model.containers.FolderImageLink
_dynamicFields - Variable in class ome.model.containers.FolderRoiLink
_dynamicFields - Variable in class ome.model.containers.Project
_dynamicFields - Variable in class ome.model.containers.ProjectDatasetLink
_dynamicFields - Variable in class ome.model.core.Channel
_dynamicFields - Variable in class ome.model.core.Image
_dynamicFields - Variable in class ome.model.core.LogicalChannel
_dynamicFields - Variable in class ome.model.core.OriginalFile
_dynamicFields - Variable in class ome.model.core.Pixels
_dynamicFields - Variable in class ome.model.core.PixelsOriginalFileMap
_dynamicFields - Variable in class ome.model.core.PlaneInfo
_dynamicFields - Variable in class ome.model.display.ChannelBinding
_dynamicFields - Variable in class ome.model.display.CodomainMapContext
_dynamicFields - Variable in class ome.model.display.ProjectionDef
_dynamicFields - Variable in class ome.model.display.QuantumDef
_dynamicFields - Variable in class ome.model.display.RenderingDef
_dynamicFields - Variable in class ome.model.display.Thumbnail
_dynamicFields - Variable in class ome.model.enums.AcquisitionMode
_dynamicFields - Variable in class ome.model.enums.AdminPrivilege
_dynamicFields - Variable in class ome.model.enums.ArcType
_dynamicFields - Variable in class ome.model.enums.Binning
_dynamicFields - Variable in class ome.model.enums.ChecksumAlgorithm
_dynamicFields - Variable in class ome.model.enums.ContrastMethod
_dynamicFields - Variable in class ome.model.enums.Correction
_dynamicFields - Variable in class ome.model.enums.DetectorType
_dynamicFields - Variable in class ome.model.enums.DimensionOrder
_dynamicFields - Variable in class ome.model.enums.EventType
_dynamicFields - Variable in class ome.model.enums.ExperimentType
_dynamicFields - Variable in class ome.model.enums.Family
_dynamicFields - Variable in class ome.model.enums.FilamentType
_dynamicFields - Variable in class ome.model.enums.FilterType
_dynamicFields - Variable in class ome.model.enums.Format
_dynamicFields - Variable in class ome.model.enums.Illumination
_dynamicFields - Variable in class ome.model.enums.Immersion
_dynamicFields - Variable in class ome.model.enums.LaserMedium
_dynamicFields - Variable in class ome.model.enums.LaserType
_dynamicFields - Variable in class ome.model.enums.Medium
_dynamicFields - Variable in class ome.model.enums.MicrobeamManipulationType
_dynamicFields - Variable in class ome.model.enums.MicroscopeType
_dynamicFields - Variable in class ome.model.enums.PhotometricInterpretation
_dynamicFields - Variable in class ome.model.enums.PixelsType
_dynamicFields - Variable in class ome.model.enums.ProjectionAxis
_dynamicFields - Variable in class ome.model.enums.ProjectionType
_dynamicFields - Variable in class ome.model.enums.Pulse
_dynamicFields - Variable in class ome.model.enums.RenderingModel
_dynamicFields - Variable in class ome.model.experiment.Experiment
_dynamicFields - Variable in class ome.model.experiment.MicrobeamManipulation
_dynamicFields - Variable in class ome.model.fs.Fileset
_dynamicFields - Variable in class ome.model.fs.FilesetEntry
_dynamicFields - Variable in class ome.model.fs.FilesetJobLink
_dynamicFields - Variable in class ome.model.internal.Details
_dynamicFields - Variable in class ome.model.internal.Link
_dynamicFields - Variable in class ome.model.jobs.Job
_dynamicFields - Variable in class ome.model.jobs.JobOriginalFileLink
_dynamicFields - Variable in class ome.model.jobs.JobStatus
_dynamicFields - Variable in class ome.model.meta.DBPatch
_dynamicFields - Variable in class ome.model.meta.Event
_dynamicFields - Variable in class ome.model.meta.EventLog
_dynamicFields - Variable in class ome.model.meta.Experimenter
_dynamicFields - Variable in class ome.model.meta.ExperimenterGroup
_dynamicFields - Variable in class ome.model.meta.ExternalInfo
_dynamicFields - Variable in class ome.model.meta.GroupExperimenterMap
_dynamicFields - Variable in class ome.model.meta.Namespace
_dynamicFields - Variable in class ome.model.meta.Node
_dynamicFields - Variable in class ome.model.meta.Session
_dynamicFields - Variable in class ome.model.meta.ShareMember
_dynamicFields - Variable in class ome.model.roi.AffineTransform
_dynamicFields - Variable in class ome.model.roi.Roi
_dynamicFields - Variable in class ome.model.roi.Shape
_dynamicFields - Variable in class ome.model.screen.Plate
_dynamicFields - Variable in class ome.model.screen.PlateAcquisition
_dynamicFields - Variable in class ome.model.screen.Reagent
_dynamicFields - Variable in class ome.model.screen.Screen
_dynamicFields - Variable in class ome.model.screen.ScreenPlateLink
_dynamicFields - Variable in class ome.model.screen.Well
_dynamicFields - Variable in class ome.model.screen.WellReagentLink
_dynamicFields - Variable in class ome.model.screen.WellSample
_dynamicFields - Variable in class ome.model.stats.StatsInfo
_externalInfo - Variable in class ome.model.internal.Details
_filteredCollections - Variable in class ome.model.internal.Details
_group - Variable in class ome.model.internal.Details
_jdbc() - Method in class ome.util.actions.PostgresSqlAction
_jdbc() - Method in class ome.util.SqlAction.Impl
_loaded - Variable in class ome.model.acquisition.Detector
_loaded - Variable in class ome.model.acquisition.DetectorSettings
_loaded - Variable in class ome.model.acquisition.Dichroic
_loaded - Variable in class ome.model.acquisition.Filter
_loaded - Variable in class ome.model.acquisition.FilterSet
_loaded - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
_loaded - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
_loaded - Variable in class ome.model.acquisition.ImagingEnvironment
_loaded - Variable in class ome.model.acquisition.Instrument
_loaded - Variable in class ome.model.acquisition.LightPath
_loaded - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
_loaded - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
_loaded - Variable in class ome.model.acquisition.LightSettings
_loaded - Variable in class ome.model.acquisition.LightSource
_loaded - Variable in class ome.model.acquisition.Microscope
_loaded - Variable in class ome.model.acquisition.Objective
_loaded - Variable in class ome.model.acquisition.ObjectiveSettings
_loaded - Variable in class ome.model.acquisition.OTF
_loaded - Variable in class ome.model.acquisition.StageLabel
_loaded - Variable in class ome.model.acquisition.TransmittanceRange
_loaded - Variable in class ome.model.annotations.Annotation
_loaded - Variable in class ome.model.annotations.AnnotationAnnotationLink
_loaded - Variable in class ome.model.annotations.ChannelAnnotationLink
_loaded - Variable in class ome.model.annotations.DatasetAnnotationLink
_loaded - Variable in class ome.model.annotations.DetectorAnnotationLink
_loaded - Variable in class ome.model.annotations.DichroicAnnotationLink
_loaded - Variable in class ome.model.annotations.ExperimenterAnnotationLink
_loaded - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
_loaded - Variable in class ome.model.annotations.FilesetAnnotationLink
_loaded - Variable in class ome.model.annotations.FilterAnnotationLink
_loaded - Variable in class ome.model.annotations.FolderAnnotationLink
_loaded - Variable in class ome.model.annotations.ImageAnnotationLink
_loaded - Variable in class ome.model.annotations.InstrumentAnnotationLink
_loaded - Variable in class ome.model.annotations.LightPathAnnotationLink
_loaded - Variable in class ome.model.annotations.LightSourceAnnotationLink
_loaded - Variable in class ome.model.annotations.NamespaceAnnotationLink
_loaded - Variable in class ome.model.annotations.NodeAnnotationLink
_loaded - Variable in class ome.model.annotations.ObjectiveAnnotationLink
_loaded - Variable in class ome.model.annotations.OriginalFileAnnotationLink
_loaded - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
_loaded - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
_loaded - Variable in class ome.model.annotations.PlateAnnotationLink
_loaded - Variable in class ome.model.annotations.ProjectAnnotationLink
_loaded - Variable in class ome.model.annotations.ReagentAnnotationLink
_loaded - Variable in class ome.model.annotations.RoiAnnotationLink
_loaded - Variable in class ome.model.annotations.ScreenAnnotationLink
_loaded - Variable in class ome.model.annotations.SessionAnnotationLink
_loaded - Variable in class ome.model.annotations.ShapeAnnotationLink
_loaded - Variable in class ome.model.annotations.WellAnnotationLink
_loaded - Variable in class ome.model.containers.Dataset
_loaded - Variable in class ome.model.containers.DatasetImageLink
_loaded - Variable in class ome.model.containers.Folder
_loaded - Variable in class ome.model.containers.FolderImageLink
_loaded - Variable in class ome.model.containers.FolderRoiLink
_loaded - Variable in class ome.model.containers.Project
_loaded - Variable in class ome.model.containers.ProjectDatasetLink
_loaded - Variable in class ome.model.core.Channel
_loaded - Variable in class ome.model.core.Image
_loaded - Variable in class ome.model.core.LogicalChannel
_loaded - Variable in class ome.model.core.OriginalFile
_loaded - Variable in class ome.model.core.Pixels
_loaded - Variable in class ome.model.core.PixelsOriginalFileMap
_loaded - Variable in class ome.model.core.PlaneInfo
_loaded - Variable in class ome.model.display.ChannelBinding
_loaded - Variable in class ome.model.display.CodomainMapContext
_loaded - Variable in class ome.model.display.ProjectionDef
_loaded - Variable in class ome.model.display.QuantumDef
_loaded - Variable in class ome.model.display.RenderingDef
_loaded - Variable in class ome.model.display.Thumbnail
_loaded - Variable in class ome.model.enums.AcquisitionMode
_loaded - Variable in class ome.model.enums.AdminPrivilege
_loaded - Variable in class ome.model.enums.ArcType
_loaded - Variable in class ome.model.enums.Binning
_loaded - Variable in class ome.model.enums.ChecksumAlgorithm
_loaded - Variable in class ome.model.enums.ContrastMethod
_loaded - Variable in class ome.model.enums.Correction
_loaded - Variable in class ome.model.enums.DetectorType
_loaded - Variable in class ome.model.enums.DimensionOrder
_loaded - Variable in class ome.model.enums.EventType
_loaded - Variable in class ome.model.enums.ExperimentType
_loaded - Variable in class ome.model.enums.Family
_loaded - Variable in class ome.model.enums.FilamentType
_loaded - Variable in class ome.model.enums.FilterType
_loaded - Variable in class ome.model.enums.Format
_loaded - Variable in class ome.model.enums.Illumination
_loaded - Variable in class ome.model.enums.Immersion
_loaded - Variable in class ome.model.enums.LaserMedium
_loaded - Variable in class ome.model.enums.LaserType
_loaded - Variable in class ome.model.enums.Medium
_loaded - Variable in class ome.model.enums.MicrobeamManipulationType
_loaded - Variable in class ome.model.enums.MicroscopeType
_loaded - Variable in class ome.model.enums.PhotometricInterpretation
_loaded - Variable in class ome.model.enums.PixelsType
_loaded - Variable in class ome.model.enums.ProjectionAxis
_loaded - Variable in class ome.model.enums.ProjectionType
_loaded - Variable in class ome.model.enums.Pulse
_loaded - Variable in class ome.model.enums.RenderingModel
_loaded - Variable in class ome.model.experiment.Experiment
_loaded - Variable in class ome.model.experiment.MicrobeamManipulation
_loaded - Variable in class ome.model.fs.Fileset
_loaded - Variable in class ome.model.fs.FilesetEntry
_loaded - Variable in class ome.model.fs.FilesetJobLink
_loaded - Variable in class ome.model.internal.Link
_loaded - Variable in class ome.model.jobs.Job
_loaded - Variable in class ome.model.jobs.JobOriginalFileLink
_loaded - Variable in class ome.model.jobs.JobStatus
_loaded - Variable in class ome.model.meta.DBPatch
_loaded - Variable in class ome.model.meta.Event
_loaded - Variable in class ome.model.meta.EventLog
_loaded - Variable in class ome.model.meta.Experimenter
_loaded - Variable in class ome.model.meta.ExperimenterGroup
_loaded - Variable in class ome.model.meta.ExternalInfo
_loaded - Variable in class ome.model.meta.GroupExperimenterMap
_loaded - Variable in class ome.model.meta.Namespace
_loaded - Variable in class ome.model.meta.Node
_loaded - Variable in class ome.model.meta.Session
_loaded - Variable in class ome.model.meta.ShareMember
_loaded - Variable in class ome.model.roi.AffineTransform
_loaded - Variable in class ome.model.roi.Roi
_loaded - Variable in class ome.model.roi.Shape
_loaded - Variable in class ome.model.screen.Plate
_loaded - Variable in class ome.model.screen.PlateAcquisition
_loaded - Variable in class ome.model.screen.Reagent
_loaded - Variable in class ome.model.screen.Screen
_loaded - Variable in class ome.model.screen.ScreenPlateLink
_loaded - Variable in class ome.model.screen.Well
_loaded - Variable in class ome.model.screen.WellReagentLink
_loaded - Variable in class ome.model.screen.WellSample
_loaded - Variable in class ome.model.stats.StatsInfo
_lookup(String) - Method in class ome.util.actions.PostgresSqlAction
_lookup(String) - Method in class ome.util.SqlAction.Impl
_namedJdbc() - Method in class ome.util.actions.PostgresSqlAction
_namedJdbc() - Method in class ome.util.SqlAction.Impl
_owner - Variable in class ome.model.internal.Details
_perms - Variable in class ome.model.internal.Details
_update - Variable in class ome.model.internal.Details

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