Package ome.model.screen
Class Plate
- java.lang.Object
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- ome.model.screen.Plate
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- All Implemented Interfaces:
java.io.Serializable
,IAnnotated
,IMutable
,IObject
,Filterable
@Entity @Indexed(index="FullText") @ClassBridge(name="details", impl=DetailsFieldBridge.class, index=UN_TOKENIZED, store=NO) public class Plate extends java.lang.Object implements java.io.Serializable, IObject, IMutable, IAnnotated
These filter definitions are used by the security system to eliminate non-readable objects from queries. The regular user does not need to worry about them, as they will be injected directly into the SQL (not HQL)- See Also:
- Serialized Form
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Nested Class Summary
Nested Classes Modifier and Type Class Description static class
Plate.Details
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Field Summary
Fields Modifier and Type Field Description protected java.util.Map<java.lang.String,java.lang.Object>
_dynamicFields
protected boolean
_loaded
protected java.util.Set<PlateAnnotationLink>
annotationLinks
static java.lang.String
ANNOTATIONLINKS
static java.lang.String
ANNOTATIONLINKSCOUNTPEROWNER
protected java.lang.String
columnNamingConvention
static java.lang.String
COLUMNNAMINGCONVENTION
protected java.lang.Integer
columns
static java.lang.String
COLUMNS
protected java.lang.Integer
defaultSample
static java.lang.String
DEFAULTSAMPLE
protected java.lang.String
description
static java.lang.String
DESCRIPTION
protected Details
details
static java.lang.String
DETAILS
static java.lang.String
EVENT_FILTER
static java.lang.String
EVENT_FILTER_ANNOTATIONLINKS
static java.lang.String
EVENT_FILTER_PLATEACQUISITIONS
static java.lang.String
EVENT_FILTER_SCREENLINKS
static java.lang.String
EVENT_FILTER_WELLS
protected java.lang.String
externalIdentifier
static java.lang.String
EXTERNALIDENTIFIER
static java.util.Set<java.lang.String>
FIELDS
static java.lang.String
GROUP_FILTER
static java.lang.String
GROUP_FILTER_ANNOTATIONLINKS
static java.lang.String
GROUP_FILTER_PLATEACQUISITIONS
static java.lang.String
GROUP_FILTER_SCREENLINKS
static java.lang.String
GROUP_FILTER_WELLS
protected java.lang.Long
id
static java.lang.String
ID
protected java.lang.String
name
static java.lang.String
NAME
static java.lang.String
OWNER_FILTER
static java.lang.String
OWNER_FILTER_ANNOTATIONLINKS
static java.lang.String
OWNER_FILTER_PLATEACQUISITIONS
static java.lang.String
OWNER_FILTER_SCREENLINKS
static java.lang.String
OWNER_FILTER_WELLS
static java.lang.String
PERMS_FILTER
static java.lang.String
PERMS_FILTER_ANNOTATIONLINKS
static java.lang.String
PERMS_FILTER_PLATEACQUISITIONS
static java.lang.String
PERMS_FILTER_SCREENLINKS
static java.lang.String
PERMS_FILTER_WELLS
protected java.util.Set<PlateAcquisition>
plateAcquisitions
static java.lang.String
PLATEACQUISITIONS
protected java.lang.String
rowNamingConvention
static java.lang.String
ROWNAMINGCONVENTION
protected java.lang.Integer
rows
static java.lang.String
ROWS
protected java.util.Set<ScreenPlateLink>
screenLinks
static java.lang.String
SCREENLINKS
static java.lang.String
SCREENLINKSCOUNTPEROWNER
protected java.lang.String
status
static java.lang.String
STATUS
protected java.lang.Integer
version
static java.lang.String
VERSION
protected Length
wellOriginX
static java.lang.String
WELLORIGINX
protected Length
wellOriginY
static java.lang.String
WELLORIGINY
protected java.util.Set<Well>
wells
static java.lang.String
WELLS
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
acceptFilter(Filter __filter)
void
addPlateAcquisition(PlateAcquisition target)
use instead of setPlateAcquisitions .void
addPlateAcquisitionSet(java.util.Collection<PlateAcquisition> targets)
use like addPlateAcquisition.void
addPlateAnnotationLink(PlateAnnotationLink target)
use instead of setAnnotationLinks .void
addPlateAnnotationLink(PlateAnnotationLink link, boolean bothSides)
Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAnnotationLink will be called on the addition if it is loadedvoid
addPlateAnnotationLinkSet(java.util.Collection<PlateAnnotationLink> targets)
use like addPlateAnnotationLink.void
addScreenPlateLink(ScreenPlateLink target)
use instead of setScreenLinks .void
addScreenPlateLink(ScreenPlateLink link, boolean bothSides)
Adds a ome.model.screen.ScreenPlateLink to screenLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loadedvoid
addScreenPlateLinkSet(java.util.Collection<ScreenPlateLink> targets)
use like addScreenPlateLink.void
addWell(Well target)
use instead of setWells .void
addWellSet(java.util.Collection<Well> targets)
use like addWell.void
clearAnnotationLinks()
clears the set.void
clearPlateAcquisitions()
clears the set.void
clearScreenLinks()
clears the set.void
clearWells()
clears the set.<E> java.util.List<E>
collectAnnotationLinks(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.annotations.PlateAnnotationLink while collecting the results.<E> java.util.List<E>
collectPlateAcquisitions(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.screen.PlateAcquisition while collecting the results.<E> java.util.List<E>
collectScreenLinks(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results.<E> java.util.List<E>
collectWells(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.<E> java.util.List<E>
eachLinkedAnnotation(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.<E> java.util.List<E>
eachLinkedScreen(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.screen.Screen while collecting the results.protected void
errorIfUnloaded()
java.util.Set<java.lang.String>
fields()
returns a Set of field names that belong to this classjava.util.Set<PlateAnnotationLink>
findPlateAnnotationLink(Annotation target)
find all ome.model.annotations.PlateAnnotationLink which have the argument as their child.java.util.Set<ScreenPlateLink>
findScreenPlateLink(Screen target)
find all ome.model.screen.ScreenPlateLink which have the argument as their parent.protected java.util.Set<PlateAnnotationLink>
getAnnotationLinks()
returns annotationLinks .java.util.Map<java.lang.Long,java.lang.Long>
getAnnotationLinksCountPerOwner()
If fetched, returns the count(*) of ome.model.annotations.PlateAnnotationLink that a user has.java.lang.String
getColumnNamingConvention()
Simple field ome.model.screen.Plate.columnNamingConvention (java.lang.String)java.lang.Integer
getColumns()
Simple field ome.model.screen.Plate.columns (java.lang.Integer)java.lang.Integer
getDefaultSample()
Simple field ome.model.screen.Plate.defaultSample (java.lang.Integer)java.lang.String
getDescription()
Simple field ome.model.screen.Plate.description (java.lang.String)Details
getDetails()
The details of this object correspond to low-level system information.java.lang.String
getExternalIdentifier()
Simple field ome.model.screen.Plate.externalIdentifier (java.lang.String)GraphHolder
getGraphHolder()
retrieves theGraphHolder
for this entity.java.lang.Long
getId()
The DB unique identifier for this object.java.lang.String
getName()
Simple field ome.model.screen.Plate.name (java.lang.String)protected java.util.Set<PlateAcquisition>
getPlateAcquisitions()
returns plateAcquisitions .java.lang.String
getRowNamingConvention()
Simple field ome.model.screen.Plate.rowNamingConvention (java.lang.String)java.lang.Integer
getRows()
Simple field ome.model.screen.Plate.rows (java.lang.Integer)protected java.util.Set<ScreenPlateLink>
getScreenLinks()
returns screenLinks .java.util.Map<java.lang.Long,java.lang.Long>
getScreenLinksCountPerOwner()
If fetched, returns the count(*) of ome.model.screen.ScreenPlateLink that a user has.java.lang.String
getStatus()
Simple field ome.model.screen.Plate.status (java.lang.String)java.lang.Integer
getVersion()
This version number is controlled by the database for optimisitic locking.Length
getWellOriginX()
Enum-mapped unit-based field ome.model.screen.Plate.wellOriginX (ome.model.units.Length)Length
getWellOriginY()
Enum-mapped unit-based field ome.model.screen.Plate.wellOriginY (ome.model.units.Length)protected java.util.Set<Well>
getWells()
returns wells .boolean
isLoaded()
transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.boolean
isValid()
calls the class-specific validator for this instance and returns the value fromValidation.isValid()
java.util.Iterator<PlateAnnotationLink>
iterateAnnotationLinks()
should be used rather than accessing the annotationLinks set directly.java.util.Iterator<PlateAcquisition>
iteratePlateAcquisitions()
should be used rather than accessing the plateAcquisitions set directly.java.util.Iterator<ScreenPlateLink>
iterateScreenLinks()
should be used rather than accessing the screenLinks set directly.java.util.Iterator<Well>
iterateWells()
should be used rather than accessing the wells set directly.PlateAnnotationLink
linkAnnotation(Annotation addition)
Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks .java.util.Iterator<Annotation>
linkedAnnotationIterator()
provides an iterator over the parent values of the annotationLinks.java.util.List<Annotation>
linkedAnnotationList()
produces aList
-copy of the underlying collection.java.util.Iterator<Screen>
linkedScreenIterator()
provides an iterator over the child values of the screenLinks.java.util.List<Screen>
linkedScreenList()
produces aList
-copy of the underlying collection.ScreenPlateLink
linkScreen(Screen addition)
Adds a ome.model.screen.ScreenPlateLink to screenLinks .Plate
newInstance()
Plate
proxy()
void
putAt(java.lang.String field, java.lang.Object value)
stores a value in this instance.void
removePlateAcquisition(PlateAcquisition target)
removes a single element from this set and makes the inverse call on ome.model.screen.PlateAcquisitionvoid
removePlateAcquisitionSet(java.util.Collection<PlateAcquisition> targets)
use like removePlateAcquisitionvoid
removePlateAnnotationLink(PlateAnnotationLink target)
removes a single element from this set and makes the inverse call on ome.model.annotations.PlateAnnotationLinkvoid
removePlateAnnotationLink(PlateAnnotationLink link, boolean bothSides)
removes the given PlateAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.void
removePlateAnnotationLinkSet(java.util.Collection<PlateAnnotationLink> targets)
use like removePlateAnnotationLinkvoid
removeScreenPlateLink(ScreenPlateLink target)
removes a single element from this set and makes the inverse call on ome.model.screen.ScreenPlateLinkvoid
removeScreenPlateLink(ScreenPlateLink link, boolean bothSides)
removes the given ScreenPlateLink from screenLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.void
removeScreenPlateLinkSet(java.util.Collection<ScreenPlateLink> targets)
use like removeScreenPlateLinkvoid
removeWell(Well target)
removes a single element from this set and makes the inverse call on ome.model.screen.Wellvoid
removeWellSet(java.util.Collection<Well> targets)
use like removeWelljava.lang.Object
retrieve(java.lang.String field)
retrieves a value from this instance.protected void
setAnnotationLinks(java.util.Set<PlateAnnotationLink> annotationLinks)
setter for annotationLinks should be avoided.protected void
setAnnotationLinksCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
void
setColumnNamingConvention(java.lang.String columnNamingConvention)
void
setColumns(java.lang.Integer columns)
void
setDefaultSample(java.lang.Integer defaultSample)
void
setDescription(java.lang.String description)
protected void
setDetails(Details details)
void
setExternalIdentifier(java.lang.String externalIdentifier)
void
setId(java.lang.Long id)
usually unneeded.void
setName(java.lang.String name)
protected void
setPlateAcquisitions(java.util.Set<PlateAcquisition> plateAcquisitions)
setter for plateAcquisitions should be avoided.void
setRowNamingConvention(java.lang.String rowNamingConvention)
void
setRows(java.lang.Integer rows)
protected void
setScreenLinks(java.util.Set<ScreenPlateLink> screenLinks)
setter for screenLinks should be avoided.protected void
setScreenLinksCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
void
setStatus(java.lang.String status)
void
setVersion(java.lang.Integer version)
use with caution.void
setWellOriginX(Length wellOriginX)
void
setWellOriginY(Length wellOriginY)
protected void
setWells(java.util.Set<Well> wells)
setter for wells should be avoided.int
sizeOfAnnotationLinks()
returns the size of annotationLinks.int
sizeOfPlateAcquisitions()
returns the size of plateAcquisitions.int
sizeOfScreenLinks()
returns the size of screenLinks.int
sizeOfWells()
returns the size of wells.protected void
throwNullCollectionException(java.lang.String propertyName)
java.lang.String
toString()
void
unlinkAnnotation(Annotation removal)
unlinks all ome.model.annotations.Annotation instances from this instance.void
unlinkScreen(Screen removal)
unlinks all ome.model.screen.Screen instances from this instance.void
unload()
set the loaded field to false, and set all non-ID fields to null.java.util.Collection<PlateAnnotationLink>
unmodifiableAnnotationLinks()
Returns an unmodifiable collection-viewjava.util.Collection<PlateAcquisition>
unmodifiablePlateAcquisitions()
Returns an unmodifiable collection-viewjava.util.Collection<ScreenPlateLink>
unmodifiableScreenLinks()
Returns an unmodifiable collection-viewjava.util.Collection<Well>
unmodifiableWells()
Returns an unmodifiable collection-viewValidation
validate()
calls the class-specific validator for this instance and returns theValidation
object.
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Field Detail
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OWNER_FILTER
public static final java.lang.String OWNER_FILTER
- See Also:
- Constant Field Values
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GROUP_FILTER
public static final java.lang.String GROUP_FILTER
- See Also:
- Constant Field Values
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EVENT_FILTER
public static final java.lang.String EVENT_FILTER
- See Also:
- Constant Field Values
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PERMS_FILTER
public static final java.lang.String PERMS_FILTER
- See Also:
- Constant Field Values
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ID
public static final java.lang.String ID
- See Also:
- Constant Field Values
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id
protected java.lang.Long id
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VERSION
public static final java.lang.String VERSION
- See Also:
- Constant Field Values
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version
protected java.lang.Integer version
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defaultSample
protected java.lang.Integer defaultSample
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columnNamingConvention
protected java.lang.String columnNamingConvention
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rowNamingConvention
protected java.lang.String rowNamingConvention
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wellOriginX
protected Length wellOriginX
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wellOriginY
protected Length wellOriginY
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rows
protected java.lang.Integer rows
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columns
protected java.lang.Integer columns
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status
protected java.lang.String status
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externalIdentifier
protected java.lang.String externalIdentifier
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screenLinks
protected java.util.Set<ScreenPlateLink> screenLinks
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OWNER_FILTER_SCREENLINKS
public static final java.lang.String OWNER_FILTER_SCREENLINKS
- See Also:
- Constant Field Values
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GROUP_FILTER_SCREENLINKS
public static final java.lang.String GROUP_FILTER_SCREENLINKS
- See Also:
- Constant Field Values
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EVENT_FILTER_SCREENLINKS
public static final java.lang.String EVENT_FILTER_SCREENLINKS
- See Also:
- Constant Field Values
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PERMS_FILTER_SCREENLINKS
public static final java.lang.String PERMS_FILTER_SCREENLINKS
- See Also:
- Constant Field Values
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wells
protected java.util.Set<Well> wells
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OWNER_FILTER_WELLS
public static final java.lang.String OWNER_FILTER_WELLS
- See Also:
- Constant Field Values
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GROUP_FILTER_WELLS
public static final java.lang.String GROUP_FILTER_WELLS
- See Also:
- Constant Field Values
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EVENT_FILTER_WELLS
public static final java.lang.String EVENT_FILTER_WELLS
- See Also:
- Constant Field Values
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PERMS_FILTER_WELLS
public static final java.lang.String PERMS_FILTER_WELLS
- See Also:
- Constant Field Values
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plateAcquisitions
protected java.util.Set<PlateAcquisition> plateAcquisitions
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OWNER_FILTER_PLATEACQUISITIONS
public static final java.lang.String OWNER_FILTER_PLATEACQUISITIONS
- See Also:
- Constant Field Values
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GROUP_FILTER_PLATEACQUISITIONS
public static final java.lang.String GROUP_FILTER_PLATEACQUISITIONS
- See Also:
- Constant Field Values
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EVENT_FILTER_PLATEACQUISITIONS
public static final java.lang.String EVENT_FILTER_PLATEACQUISITIONS
- See Also:
- Constant Field Values
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PERMS_FILTER_PLATEACQUISITIONS
public static final java.lang.String PERMS_FILTER_PLATEACQUISITIONS
- See Also:
- Constant Field Values
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annotationLinks
protected java.util.Set<PlateAnnotationLink> annotationLinks
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OWNER_FILTER_ANNOTATIONLINKS
public static final java.lang.String OWNER_FILTER_ANNOTATIONLINKS
- See Also:
- Constant Field Values
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GROUP_FILTER_ANNOTATIONLINKS
public static final java.lang.String GROUP_FILTER_ANNOTATIONLINKS
- See Also:
- Constant Field Values
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EVENT_FILTER_ANNOTATIONLINKS
public static final java.lang.String EVENT_FILTER_ANNOTATIONLINKS
- See Also:
- Constant Field Values
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PERMS_FILTER_ANNOTATIONLINKS
public static final java.lang.String PERMS_FILTER_ANNOTATIONLINKS
- See Also:
- Constant Field Values
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name
protected java.lang.String name
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description
protected java.lang.String description
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details
protected Details details
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DEFAULTSAMPLE
public static final java.lang.String DEFAULTSAMPLE
- See Also:
- Constant Field Values
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COLUMNNAMINGCONVENTION
public static final java.lang.String COLUMNNAMINGCONVENTION
- See Also:
- Constant Field Values
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ROWNAMINGCONVENTION
public static final java.lang.String ROWNAMINGCONVENTION
- See Also:
- Constant Field Values
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WELLORIGINX
public static final java.lang.String WELLORIGINX
- See Also:
- Constant Field Values
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WELLORIGINY
public static final java.lang.String WELLORIGINY
- See Also:
- Constant Field Values
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ROWS
public static final java.lang.String ROWS
- See Also:
- Constant Field Values
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COLUMNS
public static final java.lang.String COLUMNS
- See Also:
- Constant Field Values
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STATUS
public static final java.lang.String STATUS
- See Also:
- Constant Field Values
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EXTERNALIDENTIFIER
public static final java.lang.String EXTERNALIDENTIFIER
- See Also:
- Constant Field Values
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SCREENLINKSCOUNTPEROWNER
public static final java.lang.String SCREENLINKSCOUNTPEROWNER
- See Also:
- Constant Field Values
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SCREENLINKS
public static final java.lang.String SCREENLINKS
- See Also:
- Constant Field Values
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WELLS
public static final java.lang.String WELLS
- See Also:
- Constant Field Values
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PLATEACQUISITIONS
public static final java.lang.String PLATEACQUISITIONS
- See Also:
- Constant Field Values
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ANNOTATIONLINKSCOUNTPEROWNER
public static final java.lang.String ANNOTATIONLINKSCOUNTPEROWNER
- See Also:
- Constant Field Values
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ANNOTATIONLINKS
public static final java.lang.String ANNOTATIONLINKS
- See Also:
- Constant Field Values
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NAME
public static final java.lang.String NAME
- See Also:
- Constant Field Values
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DESCRIPTION
public static final java.lang.String DESCRIPTION
- See Also:
- Constant Field Values
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DETAILS
public static final java.lang.String DETAILS
- See Also:
- Constant Field Values
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FIELDS
public static final java.util.Set<java.lang.String> FIELDS
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_dynamicFields
protected java.util.Map<java.lang.String,java.lang.Object> _dynamicFields
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_loaded
protected boolean _loaded
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Method Detail
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getId
@DocumentId public java.lang.Long getId()
The DB unique identifier for this object. You are not responsible for setting the id; however, it can be useful for creating "unloaded" versions of your objects. Each top-level entity contains an id field of type long. For all objects returned from the server, this value will be non-null, which doesn't necessarily hold for the other fields.
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setId
public void setId(java.lang.Long id)
Description copied from interface:IObject
usually unneeded. Ids are managed by the backend.
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getVersion
public java.lang.Integer getVersion()
This version number is controlled by the database for optimisitic locking.- Specified by:
getVersion
in interfaceIMutable
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setVersion
public void setVersion(java.lang.Integer version)
Description copied from interface:IMutable
use with caution. In general, the version should only be altered by the backend. In the best case, an exception will be thrown for a version not equal to the current DB value. In the worst (though rare) case, the new version could match the database, and override optimistic lock checks that are supposed to prevent data loss.- Specified by:
setVersion
in interfaceIMutable
- Parameters:
version
- Value for this objects version.
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getDefaultSample
@Field(index=UN_TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields") public java.lang.Integer getDefaultSample()
Simple field ome.model.screen.Plate.defaultSample (java.lang.Integer)
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setDefaultSample
public void setDefaultSample(java.lang.Integer defaultSample)
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getColumnNamingConvention
@Field(index=TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields") public java.lang.String getColumnNamingConvention()
Simple field ome.model.screen.Plate.columnNamingConvention (java.lang.String)
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setColumnNamingConvention
public void setColumnNamingConvention(java.lang.String columnNamingConvention)
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getRowNamingConvention
@Field(index=TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields") public java.lang.String getRowNamingConvention()
Simple field ome.model.screen.Plate.rowNamingConvention (java.lang.String)
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setRowNamingConvention
public void setRowNamingConvention(java.lang.String rowNamingConvention)
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getWellOriginX
public Length getWellOriginX()
Enum-mapped unit-based field ome.model.screen.Plate.wellOriginX (ome.model.units.Length)
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setWellOriginX
public void setWellOriginX(Length wellOriginX)
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getWellOriginY
public Length getWellOriginY()
Enum-mapped unit-based field ome.model.screen.Plate.wellOriginY (ome.model.units.Length)
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setWellOriginY
public void setWellOriginY(Length wellOriginY)
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getRows
@Field(index=UN_TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields") public java.lang.Integer getRows()
Simple field ome.model.screen.Plate.rows (java.lang.Integer)
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setRows
public void setRows(java.lang.Integer rows)
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getColumns
@Field(index=UN_TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields") public java.lang.Integer getColumns()
Simple field ome.model.screen.Plate.columns (java.lang.Integer)
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setColumns
public void setColumns(java.lang.Integer columns)
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getStatus
@Field(index=TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields") public java.lang.String getStatus()
Simple field ome.model.screen.Plate.status (java.lang.String)
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setStatus
public void setStatus(java.lang.String status)
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getExternalIdentifier
@Field(index=TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields") public java.lang.String getExternalIdentifier()
Simple field ome.model.screen.Plate.externalIdentifier (java.lang.String)
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setExternalIdentifier
public void setExternalIdentifier(java.lang.String externalIdentifier)
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getScreenLinks
protected java.util.Set<ScreenPlateLink> getScreenLinks()
returns screenLinks . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.screen.Plate.screenLinks (ome.model.screen.ScreenPlateLink)
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setScreenLinks
protected void setScreenLinks(java.util.Set<ScreenPlateLink> screenLinks)
setter for screenLinks should be avoided. Does not fulfill normal semantics.
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sizeOfScreenLinks
public int sizeOfScreenLinks()
returns the size of screenLinks. If less than zero, the Set was null.
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iterateScreenLinks
public java.util.Iterator<ScreenPlateLink> iterateScreenLinks()
should be used rather than accessing the screenLinks set directly. This method will never return null, but rather will return an instance ofEmptyIterator
. To test for a null collection, see ofsizeOfScreenLinks()
is less than zero.
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unmodifiableScreenLinks
public java.util.Collection<ScreenPlateLink> unmodifiableScreenLinks()
Returns an unmodifiable collection-view
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collectScreenLinks
public <E> java.util.List<E> collectScreenLinks(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results. Ifblock == null
, then the iterator values themselves are collected. This method usesiterateScreenLinks()
internally and so will return a value even if the underlying collection is null.
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addScreenPlateLink
public void addScreenPlateLink(ScreenPlateLink target)
use instead of setScreenLinks . Makes the necessary call on ome.model.screen.ScreenPlateLink as well.
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addScreenPlateLinkSet
public void addScreenPlateLinkSet(java.util.Collection<ScreenPlateLink> targets)
use like addScreenPlateLink.
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removeScreenPlateLink
public void removeScreenPlateLink(ScreenPlateLink target)
removes a single element from this set and makes the inverse call on ome.model.screen.ScreenPlateLink
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removeScreenPlateLinkSet
public void removeScreenPlateLinkSet(java.util.Collection<ScreenPlateLink> targets)
use like removeScreenPlateLink
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linkScreen
public ScreenPlateLink linkScreen(Screen addition)
Adds a ome.model.screen.ScreenPlateLink to screenLinks . This entails changing our screenLinks Set, creating a new ome.model.screen.ScreenPlateLink and calling linkScreen on the ome.model.screen.Screen.
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addScreenPlateLink
public void addScreenPlateLink(ScreenPlateLink link, boolean bothSides)
Adds a ome.model.screen.ScreenPlateLink to screenLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded
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linkedScreenIterator
public java.util.Iterator<Screen> linkedScreenIterator()
provides an iterator over the child values of the screenLinks. Like with most Collection iterators, modifications to the underlying collection while iterating will result in anConcurrentModificationException
. UselinkedScreenList()
instead.
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findScreenPlateLink
public java.util.Set<ScreenPlateLink> findScreenPlateLink(Screen target)
find all ome.model.screen.ScreenPlateLink which have the argument as their parent.
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linkedScreenList
public java.util.List<Screen> linkedScreenList()
produces aList
-copy of the underlying collection. Unlike,linkedScreenIterator()
, while using the returnedList
, modifications can be made to the underlying collection without throwingConcurrentModificationException
.
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eachLinkedScreen
public <E> java.util.List<E> eachLinkedScreen(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.screen.Screen while collecting the results. Ifblock == null
, then the iterator values themselves are collected.
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unlinkScreen
public void unlinkScreen(Screen removal)
unlinks all ome.model.screen.Screen instances from this instance.
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removeScreenPlateLink
public void removeScreenPlateLink(ScreenPlateLink link, boolean bothSides)
removes the given ScreenPlateLink from screenLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.
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clearScreenLinks
public void clearScreenLinks()
clears the set.
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setScreenLinksCountPerOwner
protected void setScreenLinksCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
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getScreenLinksCountPerOwner
public java.util.Map<java.lang.Long,java.lang.Long> getScreenLinksCountPerOwner()
If fetched, returns the count(*) of ome.model.screen.ScreenPlateLink that a user has. If unfetched, returns null. No entries in the collection should be null.
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getWells
protected java.util.Set<Well> getWells()
returns wells . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.screen.Plate.wells (ome.model.screen.Well)
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setWells
protected void setWells(java.util.Set<Well> wells)
setter for wells should be avoided. Does not fulfill normal semantics.
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sizeOfWells
public int sizeOfWells()
returns the size of wells. If less than zero, the Set was null.
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iterateWells
public java.util.Iterator<Well> iterateWells()
should be used rather than accessing the wells set directly. This method will never return null, but rather will return an instance ofEmptyIterator
. To test for a null collection, see ofsizeOfWells()
is less than zero.
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unmodifiableWells
public java.util.Collection<Well> unmodifiableWells()
Returns an unmodifiable collection-view
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collectWells
public <E> java.util.List<E> collectWells(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results. Ifblock == null
, then the iterator values themselves are collected. This method usesiterateWells()
internally and so will return a value even if the underlying collection is null.
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addWell
public void addWell(Well target)
use instead of setWells . Makes the necessary call on ome.model.screen.Well as well.
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addWellSet
public void addWellSet(java.util.Collection<Well> targets)
use like addWell.
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removeWell
public void removeWell(Well target)
removes a single element from this set and makes the inverse call on ome.model.screen.Well
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removeWellSet
public void removeWellSet(java.util.Collection<Well> targets)
use like removeWell
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clearWells
public void clearWells()
clears the set.
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getPlateAcquisitions
protected java.util.Set<PlateAcquisition> getPlateAcquisitions()
returns plateAcquisitions . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.screen.Plate.plateAcquisitions (ome.model.screen.PlateAcquisition)
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setPlateAcquisitions
protected void setPlateAcquisitions(java.util.Set<PlateAcquisition> plateAcquisitions)
setter for plateAcquisitions should be avoided. Does not fulfill normal semantics.
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sizeOfPlateAcquisitions
public int sizeOfPlateAcquisitions()
returns the size of plateAcquisitions. If less than zero, the Set was null.
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iteratePlateAcquisitions
public java.util.Iterator<PlateAcquisition> iteratePlateAcquisitions()
should be used rather than accessing the plateAcquisitions set directly. This method will never return null, but rather will return an instance ofEmptyIterator
. To test for a null collection, see ofsizeOfPlateAcquisitions()
is less than zero.
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unmodifiablePlateAcquisitions
public java.util.Collection<PlateAcquisition> unmodifiablePlateAcquisitions()
Returns an unmodifiable collection-view
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collectPlateAcquisitions
public <E> java.util.List<E> collectPlateAcquisitions(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.screen.PlateAcquisition while collecting the results. Ifblock == null
, then the iterator values themselves are collected. This method usesiteratePlateAcquisitions()
internally and so will return a value even if the underlying collection is null.
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addPlateAcquisition
public void addPlateAcquisition(PlateAcquisition target)
use instead of setPlateAcquisitions . Makes the necessary call on ome.model.screen.PlateAcquisition as well.
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addPlateAcquisitionSet
public void addPlateAcquisitionSet(java.util.Collection<PlateAcquisition> targets)
use like addPlateAcquisition.
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removePlateAcquisition
public void removePlateAcquisition(PlateAcquisition target)
removes a single element from this set and makes the inverse call on ome.model.screen.PlateAcquisition
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removePlateAcquisitionSet
public void removePlateAcquisitionSet(java.util.Collection<PlateAcquisition> targets)
use like removePlateAcquisition
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clearPlateAcquisitions
public void clearPlateAcquisitions()
clears the set.
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getAnnotationLinks
protected java.util.Set<PlateAnnotationLink> getAnnotationLinks()
returns annotationLinks . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.screen.Plate.annotationLinks (ome.model.annotations.PlateAnnotationLink)
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setAnnotationLinks
protected void setAnnotationLinks(java.util.Set<PlateAnnotationLink> annotationLinks)
setter for annotationLinks should be avoided. Does not fulfill normal semantics.
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sizeOfAnnotationLinks
public int sizeOfAnnotationLinks()
returns the size of annotationLinks. If less than zero, the Set was null.- Specified by:
sizeOfAnnotationLinks
in interfaceIAnnotated
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iterateAnnotationLinks
public java.util.Iterator<PlateAnnotationLink> iterateAnnotationLinks()
should be used rather than accessing the annotationLinks set directly. This method will never return null, but rather will return an instance ofEmptyIterator
. To test for a null collection, see ofsizeOfAnnotationLinks()
is less than zero.- Specified by:
iterateAnnotationLinks
in interfaceIAnnotated
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unmodifiableAnnotationLinks
public java.util.Collection<PlateAnnotationLink> unmodifiableAnnotationLinks()
Returns an unmodifiable collection-view- Specified by:
unmodifiableAnnotationLinks
in interfaceIAnnotated
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collectAnnotationLinks
public <E> java.util.List<E> collectAnnotationLinks(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.annotations.PlateAnnotationLink while collecting the results. Ifblock == null
, then the iterator values themselves are collected. This method usesiterateAnnotationLinks()
internally and so will return a value even if the underlying collection is null.- Specified by:
collectAnnotationLinks
in interfaceIAnnotated
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addPlateAnnotationLink
public void addPlateAnnotationLink(PlateAnnotationLink target)
use instead of setAnnotationLinks . Makes the necessary call on ome.model.annotations.PlateAnnotationLink as well.
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addPlateAnnotationLinkSet
public void addPlateAnnotationLinkSet(java.util.Collection<PlateAnnotationLink> targets)
use like addPlateAnnotationLink.
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removePlateAnnotationLink
public void removePlateAnnotationLink(PlateAnnotationLink target)
removes a single element from this set and makes the inverse call on ome.model.annotations.PlateAnnotationLink
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removePlateAnnotationLinkSet
public void removePlateAnnotationLinkSet(java.util.Collection<PlateAnnotationLink> targets)
use like removePlateAnnotationLink
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linkAnnotation
public PlateAnnotationLink linkAnnotation(Annotation addition)
Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks . This entails changing our annotationLinks Set, creating a new ome.model.annotations.PlateAnnotationLink and calling linkAnnotation on the ome.model.annotations.Annotation.- Specified by:
linkAnnotation
in interfaceIAnnotated
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addPlateAnnotationLink
public void addPlateAnnotationLink(PlateAnnotationLink link, boolean bothSides)
Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAnnotationLink will be called on the addition if it is loaded
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linkedAnnotationIterator
public java.util.Iterator<Annotation> linkedAnnotationIterator()
provides an iterator over the parent values of the annotationLinks. Like with most Collection iterators, modifications to the underlying collection while iterating will result in anConcurrentModificationException
. UselinkedAnnotationList()
instead.- Specified by:
linkedAnnotationIterator
in interfaceIAnnotated
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findPlateAnnotationLink
public java.util.Set<PlateAnnotationLink> findPlateAnnotationLink(Annotation target)
find all ome.model.annotations.PlateAnnotationLink which have the argument as their child.
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linkedAnnotationList
public java.util.List<Annotation> linkedAnnotationList()
produces aList
-copy of the underlying collection. Unlike,linkedAnnotationIterator()
, while using the returnedList
, modifications can be made to the underlying collection without throwingConcurrentModificationException
.- Specified by:
linkedAnnotationList
in interfaceIAnnotated
-
eachLinkedAnnotation
public <E> java.util.List<E> eachLinkedAnnotation(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results. Ifblock == null
, then the iterator values themselves are collected.- Specified by:
eachLinkedAnnotation
in interfaceIAnnotated
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unlinkAnnotation
public void unlinkAnnotation(Annotation removal)
unlinks all ome.model.annotations.Annotation instances from this instance.- Specified by:
unlinkAnnotation
in interfaceIAnnotated
-
removePlateAnnotationLink
public void removePlateAnnotationLink(PlateAnnotationLink link, boolean bothSides)
removes the given PlateAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.
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clearAnnotationLinks
public void clearAnnotationLinks()
clears the set.- Specified by:
clearAnnotationLinks
in interfaceIAnnotated
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setAnnotationLinksCountPerOwner
protected void setAnnotationLinksCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
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getAnnotationLinksCountPerOwner
public java.util.Map<java.lang.Long,java.lang.Long> getAnnotationLinksCountPerOwner()
If fetched, returns the count(*) of ome.model.annotations.PlateAnnotationLink that a user has. If unfetched, returns null. No entries in the collection should be null.
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getName
@Field(index=TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields") public java.lang.String getName()
Simple field ome.model.screen.Plate.name (java.lang.String)
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setName
public void setName(java.lang.String name)
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getDescription
@Field(index=TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields") public java.lang.String getDescription()
Simple field ome.model.screen.Plate.description (java.lang.String)
-
setDescription
public void setDescription(java.lang.String description)
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getDetails
public Details getDetails()
The details of this object correspond to low-level system information. Owner, permissions, Details is always guaranteed to be non-null, unless the user actively nulls it. Every entity also contains a Detail reference, which doesn't refer to a separate table but rather to a collection of fields collected into a Hibernate "component" which is embedded in the object. HQL queries which refer to the Details component cannot directly fetch the entity like this: select o from Object join fetch o.details but rather each field of the Details instance must be explicitly joined: select o from Object join fetch o.details.owner It should also be noted that not all types have all the fields which are present on Details. For example, select e from Experimenter e join fetch e.details.owner will fail. Experimenter has no owner, for obvious reasons. Note: subclasses of this class will return a subclass of theDetails
type.- Specified by:
getDetails
in interfaceIObject
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setDetails
protected void setDetails(Details details)
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isValid
public boolean isValid()
Description copied from interface:IObject
calls the class-specific validator for this instance and returns the value fromValidation.isValid()
-
validate
public Validation validate()
Description copied from interface:IObject
calls the class-specific validator for this instance and returns theValidation
object.
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newInstance
public Plate newInstance()
-
proxy
public Plate proxy()
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acceptFilter
public boolean acceptFilter(Filter __filter)
- Specified by:
acceptFilter
in interfaceFilterable
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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fields
public java.util.Set<java.lang.String> fields()
Description copied from interface:IObject
returns a Set of field names that belong to this class
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retrieve
public java.lang.Object retrieve(java.lang.String field)
Description copied from interface:IObject
retrieves a value from this instance. Values forfield
which match a field of this instance will be delegated to the accessors. Otherwise, values will be retrieved from a lazy-loaded map filled by calls toIObject.putAt(String, Object)
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putAt
public void putAt(java.lang.String field, java.lang.Object value)
Description copied from interface:IObject
stores a value in this instance. Values forfield
which match a field of this instance will be delegated to the accessors. Otherwise, values will be stored in a lazy-loaded map.
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isLoaded
public boolean isLoaded()
Description copied from interface:IObject
transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
-
errorIfUnloaded
protected void errorIfUnloaded()
-
unload
public void unload()
Description copied from interface:IObject
set the loaded field to false, and set all non-ID fields to null. Subsequent calls to all accessors other than getId/setId will throw an ApiUsageException
-
getGraphHolder
public final GraphHolder getGraphHolder()
Description copied from interface:IObject
retrieves theGraphHolder
for this entity. If the GraphHolder has not been actively set, a new one will be instatiated.- Specified by:
getGraphHolder
in interfaceIObject
- Returns:
- Non-null GraphHolder
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throwNullCollectionException
protected void throwNullCollectionException(java.lang.String propertyName)
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