Package ome.model.acquisition
Class LightPath
- java.lang.Object
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- ome.model.acquisition.LightPath
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- All Implemented Interfaces:
java.io.Serializable
,IAnnotated
,IMutable
,IObject
,Filterable
@Entity @Indexed(index="FullText") @ClassBridge(name="details", impl=DetailsFieldBridge.class, index=UN_TOKENIZED, store=NO) public class LightPath extends java.lang.Object implements java.io.Serializable, IObject, IMutable, IAnnotated
These filter definitions are used by the security system to eliminate non-readable objects from queries. The regular user does not need to worry about them, as they will be injected directly into the SQL (not HQL)- See Also:
- Serialized Form
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Nested Class Summary
Nested Classes Modifier and Type Class Description static class
LightPath.Details
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Field Summary
Fields Modifier and Type Field Description protected java.util.Map<java.lang.String,java.lang.Object>
_dynamicFields
protected boolean
_loaded
protected java.util.Set<LightPathAnnotationLink>
annotationLinks
static java.lang.String
ANNOTATIONLINKS
static java.lang.String
ANNOTATIONLINKSCOUNTPEROWNER
protected Details
details
static java.lang.String
DETAILS
protected Dichroic
dichroic
static java.lang.String
DICHROIC
protected java.util.Set<LightPathEmissionFilterLink>
emissionFilterLink
static java.lang.String
EMISSIONFILTERLINK
static java.lang.String
EMISSIONFILTERLINKCOUNTPEROWNER
static java.lang.String
EVENT_FILTER
static java.lang.String
EVENT_FILTER_ANNOTATIONLINKS
static java.lang.String
EVENT_FILTER_EMISSIONFILTERLINK
static java.lang.String
EVENT_FILTER_EXCITATIONFILTERLINK
protected java.util.List<LightPathExcitationFilterLink>
excitationFilterLink
static java.lang.String
EXCITATIONFILTERLINK
static java.lang.String
EXCITATIONFILTERLINKCOUNTPEROWNER
static java.util.Set<java.lang.String>
FIELDS
static java.lang.String
GROUP_FILTER
static java.lang.String
GROUP_FILTER_ANNOTATIONLINKS
static java.lang.String
GROUP_FILTER_EMISSIONFILTERLINK
static java.lang.String
GROUP_FILTER_EXCITATIONFILTERLINK
protected java.lang.Long
id
static java.lang.String
ID
static java.lang.String
OWNER_FILTER
static java.lang.String
OWNER_FILTER_ANNOTATIONLINKS
static java.lang.String
OWNER_FILTER_EMISSIONFILTERLINK
static java.lang.String
OWNER_FILTER_EXCITATIONFILTERLINK
static java.lang.String
PERMS_FILTER
static java.lang.String
PERMS_FILTER_ANNOTATIONLINKS
static java.lang.String
PERMS_FILTER_EMISSIONFILTERLINK
static java.lang.String
PERMS_FILTER_EXCITATIONFILTERLINK
protected java.lang.Integer
version
static java.lang.String
VERSION
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
acceptFilter(Filter __filter)
void
addLightPathAnnotationLink(LightPathAnnotationLink target)
use instead of setAnnotationLinks .void
addLightPathAnnotationLink(LightPathAnnotationLink link, boolean bothSides)
Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks, allowing for recursion -- whether or not addLightPathAnnotationLink will be called on the addition if it is loadedvoid
addLightPathAnnotationLinkSet(java.util.Collection<LightPathAnnotationLink> targets)
use like addLightPathAnnotationLink.void
addLightPathEmissionFilterLink(LightPathEmissionFilterLink target)
use instead of setEmissionFilterLink .void
addLightPathEmissionFilterLink(LightPathEmissionFilterLink link, boolean bothSides)
Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addLightPathEmissionFilterLink will be called on the addition if it is loadedvoid
addLightPathEmissionFilterLinkSet(java.util.Collection<LightPathEmissionFilterLink> targets)
use like addLightPathEmissionFilterLink.void
addLightPathExcitationFilterLink(LightPathExcitationFilterLink target)
use instead of setExcitationFilterLink .void
addLightPathExcitationFilterLink(LightPathExcitationFilterLink link, boolean bothSides)
Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addLightPathExcitationFilterLink will be called on the addition if it is loadedvoid
addLightPathExcitationFilterLinkSet(java.util.Collection<LightPathExcitationFilterLink> targets)
use like addLightPathExcitationFilterLink.void
clearAnnotationLinks()
clears the set.void
clearEmissionFilterLinks()
clears the set.void
clearExcitationFilterLinks()
clears the set.<E> java.util.List<E>
collectAnnotationLinks(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.annotations.LightPathAnnotationLink while collecting the results.<E> java.util.List<E>
collectEmissionFilterLink(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.acquisition.LightPathEmissionFilterLink while collecting the results.<E> java.util.List<E>
collectExcitationFilterLink(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.acquisition.LightPathExcitationFilterLink while collecting the results.<E> java.util.List<E>
eachLinkedAnnotation(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.<E> java.util.List<E>
eachLinkedEmissionFilter(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.<E> java.util.List<E>
eachLinkedExcitationFilter(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.protected void
errorIfUnloaded()
java.util.Set<java.lang.String>
fields()
returns a Set of field names that belong to this classjava.util.Set<LightPathAnnotationLink>
findLightPathAnnotationLink(Annotation target)
find all ome.model.annotations.LightPathAnnotationLink which have the argument as their child.java.util.Set<LightPathEmissionFilterLink>
findLightPathEmissionFilterLink(Filter target)
find all ome.model.acquisition.LightPathEmissionFilterLink which have the argument as their child.java.util.Set<LightPathExcitationFilterLink>
findLightPathExcitationFilterLink(Filter target)
find all ome.model.acquisition.LightPathExcitationFilterLink which have the argument as their child.protected java.util.Set<LightPathAnnotationLink>
getAnnotationLinks()
returns annotationLinks .java.util.Map<java.lang.Long,java.lang.Long>
getAnnotationLinksCountPerOwner()
If fetched, returns the count(*) of ome.model.annotations.LightPathAnnotationLink that a user has.Details
getDetails()
The details of this object correspond to low-level system information.Dichroic
getDichroic()
Many-to-one field ome.model.acquisition.LightPath.dichroic (ome.model.acquisition.Dichroic)protected java.util.Set<LightPathEmissionFilterLink>
getEmissionFilterLink()
returns emissionFilterLink .java.util.Map<java.lang.Long,java.lang.Long>
getEmissionFilterLinkCountPerOwner()
If fetched, returns the count(*) of ome.model.acquisition.LightPathEmissionFilterLink that a user has.protected java.util.List<LightPathExcitationFilterLink>
getExcitationFilterLink()
returns excitationFilterLink .java.util.Map<java.lang.Long,java.lang.Long>
getExcitationFilterLinkCountPerOwner()
If fetched, returns the count(*) of ome.model.acquisition.LightPathExcitationFilterLink that a user has.GraphHolder
getGraphHolder()
retrieves theGraphHolder
for this entity.java.lang.Long
getId()
The DB unique identifier for this object.LightPathExcitationFilterLink
getLightPathExcitationFilterLink(int index)
Gets the ome.model.acquisition.LightPathExcitationFilterLink at the given index.LightPathExcitationFilterLink
getPrimaryLightPathExcitationFilterLink()
Gets the first element of excitationFilterLink which can be interpreted as the primary or default element in some situations.java.lang.Integer
getVersion()
This version number is controlled by the database for optimisitic locking.boolean
isLoaded()
transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.boolean
isValid()
calls the class-specific validator for this instance and returns the value fromValidation.isValid()
java.util.Iterator<LightPathAnnotationLink>
iterateAnnotationLinks()
should be used rather than accessing the annotationLinks set directly.java.util.Iterator<LightPathEmissionFilterLink>
iterateEmissionFilterLink()
should be used rather than accessing the emissionFilterLink set directly.java.util.Iterator<LightPathExcitationFilterLink>
iterateExcitationFilterLink()
should be used rather than accessing the excitationFilterLink set directly.LightPathAnnotationLink
linkAnnotation(Annotation addition)
Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks .java.util.Iterator<Annotation>
linkedAnnotationIterator()
provides an iterator over the parent values of the annotationLinks.java.util.List<Annotation>
linkedAnnotationList()
produces aList
-copy of the underlying collection.java.util.Iterator<Filter>
linkedEmissionFilterIterator()
provides an iterator over the parent values of the emissionFilterLink.java.util.List<Filter>
linkedEmissionFilterList()
produces aList
-copy of the underlying collection.java.util.Iterator<Filter>
linkedExcitationFilterIterator()
provides an iterator over the parent values of the excitationFilterLink.java.util.List<Filter>
linkedExcitationFilterList()
produces aList
-copy of the underlying collection.LightPathEmissionFilterLink
linkEmissionFilter(Filter addition)
Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink .LightPathExcitationFilterLink
linkExcitationFilter(Filter addition)
Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink .LightPath
newInstance()
LightPath
proxy()
void
putAt(java.lang.String field, java.lang.Object value)
stores a value in this instance.void
removeLightPathAnnotationLink(LightPathAnnotationLink target)
removes a single element from this set and makes the inverse call on ome.model.annotations.LightPathAnnotationLinkvoid
removeLightPathAnnotationLink(LightPathAnnotationLink link, boolean bothSides)
removes the given LightPathAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.void
removeLightPathAnnotationLinkSet(java.util.Collection<LightPathAnnotationLink> targets)
use like removeLightPathAnnotationLinkvoid
removeLightPathEmissionFilterLink(LightPathEmissionFilterLink target)
removes a single element from this set and makes the inverse call on ome.model.acquisition.LightPathEmissionFilterLinkvoid
removeLightPathEmissionFilterLink(LightPathEmissionFilterLink link, boolean bothSides)
removes the given LightPathEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.void
removeLightPathEmissionFilterLinkSet(java.util.Collection<LightPathEmissionFilterLink> targets)
use like removeLightPathEmissionFilterLinkvoid
removeLightPathExcitationFilterLink(LightPathExcitationFilterLink target)
removes a single element from this set and makes the inverse call on ome.model.acquisition.LightPathExcitationFilterLinkvoid
removeLightPathExcitationFilterLink(LightPathExcitationFilterLink link, boolean bothSides)
removes the given LightPathExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.void
removeLightPathExcitationFilterLinkSet(java.util.Collection<LightPathExcitationFilterLink> targets)
use like removeLightPathExcitationFilterLinkjava.lang.Object
retrieve(java.lang.String field)
retrieves a value from this instance.protected void
setAnnotationLinks(java.util.Set<LightPathAnnotationLink> annotationLinks)
setter for annotationLinks should be avoided.protected void
setAnnotationLinksCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
protected void
setDetails(Details details)
void
setDichroic(Dichroic dichroic)
protected void
setEmissionFilterLink(java.util.Set<LightPathEmissionFilterLink> emissionFilterLink)
setter for emissionFilterLink should be avoided.protected void
setEmissionFilterLinkCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
protected void
setExcitationFilterLink(java.util.List<LightPathExcitationFilterLink> excitationFilterLink)
setter for excitationFilterLink should be avoided.protected void
setExcitationFilterLinkCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
void
setId(java.lang.Long id)
usually unneeded.LightPathExcitationFilterLink
setLightPathExcitationFilterLink(int index, LightPathExcitationFilterLink element)
Sets the ome.model.acquisition.LightPathExcitationFilterLink at the given index.LightPathExcitationFilterLink
setPrimaryLightPathExcitationFilterLink(LightPathExcitationFilterLink element)
Swaps the first element of excitationFilterLink with the first instance of the given element.void
setVersion(java.lang.Integer version)
use with caution.int
sizeOfAnnotationLinks()
returns the size of annotationLinks.int
sizeOfEmissionFilterLink()
returns the size of emissionFilterLink.int
sizeOfExcitationFilterLink()
returns the size of excitationFilterLink.protected void
throwNullCollectionException(java.lang.String propertyName)
java.lang.String
toString()
void
unlinkAnnotation(Annotation removal)
unlinks all ome.model.annotations.Annotation instances from this instance.void
unlinkEmissionFilter(Filter removal)
unlinks all ome.model.acquisition.Filter instances from this instance.void
unlinkExcitationFilter(Filter removal)
unlinks all ome.model.acquisition.Filter instances from this instance.void
unload()
set the loaded field to false, and set all non-ID fields to null.java.util.Collection<LightPathAnnotationLink>
unmodifiableAnnotationLinks()
Returns an unmodifiable collection-viewjava.util.Collection<LightPathEmissionFilterLink>
unmodifiableEmissionFilterLink()
Returns an unmodifiable collection-viewjava.util.Collection<LightPathExcitationFilterLink>
unmodifiableExcitationFilterLink()
Returns an unmodifiable collection-viewValidation
validate()
calls the class-specific validator for this instance and returns theValidation
object.
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Field Detail
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OWNER_FILTER
public static final java.lang.String OWNER_FILTER
- See Also:
- Constant Field Values
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GROUP_FILTER
public static final java.lang.String GROUP_FILTER
- See Also:
- Constant Field Values
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EVENT_FILTER
public static final java.lang.String EVENT_FILTER
- See Also:
- Constant Field Values
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PERMS_FILTER
public static final java.lang.String PERMS_FILTER
- See Also:
- Constant Field Values
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ID
public static final java.lang.String ID
- See Also:
- Constant Field Values
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id
protected java.lang.Long id
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VERSION
public static final java.lang.String VERSION
- See Also:
- Constant Field Values
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version
protected java.lang.Integer version
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excitationFilterLink
protected java.util.List<LightPathExcitationFilterLink> excitationFilterLink
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OWNER_FILTER_EXCITATIONFILTERLINK
public static final java.lang.String OWNER_FILTER_EXCITATIONFILTERLINK
- See Also:
- Constant Field Values
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GROUP_FILTER_EXCITATIONFILTERLINK
public static final java.lang.String GROUP_FILTER_EXCITATIONFILTERLINK
- See Also:
- Constant Field Values
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EVENT_FILTER_EXCITATIONFILTERLINK
public static final java.lang.String EVENT_FILTER_EXCITATIONFILTERLINK
- See Also:
- Constant Field Values
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PERMS_FILTER_EXCITATIONFILTERLINK
public static final java.lang.String PERMS_FILTER_EXCITATIONFILTERLINK
- See Also:
- Constant Field Values
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dichroic
protected Dichroic dichroic
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emissionFilterLink
protected java.util.Set<LightPathEmissionFilterLink> emissionFilterLink
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OWNER_FILTER_EMISSIONFILTERLINK
public static final java.lang.String OWNER_FILTER_EMISSIONFILTERLINK
- See Also:
- Constant Field Values
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GROUP_FILTER_EMISSIONFILTERLINK
public static final java.lang.String GROUP_FILTER_EMISSIONFILTERLINK
- See Also:
- Constant Field Values
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EVENT_FILTER_EMISSIONFILTERLINK
public static final java.lang.String EVENT_FILTER_EMISSIONFILTERLINK
- See Also:
- Constant Field Values
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PERMS_FILTER_EMISSIONFILTERLINK
public static final java.lang.String PERMS_FILTER_EMISSIONFILTERLINK
- See Also:
- Constant Field Values
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annotationLinks
protected java.util.Set<LightPathAnnotationLink> annotationLinks
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OWNER_FILTER_ANNOTATIONLINKS
public static final java.lang.String OWNER_FILTER_ANNOTATIONLINKS
- See Also:
- Constant Field Values
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GROUP_FILTER_ANNOTATIONLINKS
public static final java.lang.String GROUP_FILTER_ANNOTATIONLINKS
- See Also:
- Constant Field Values
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EVENT_FILTER_ANNOTATIONLINKS
public static final java.lang.String EVENT_FILTER_ANNOTATIONLINKS
- See Also:
- Constant Field Values
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PERMS_FILTER_ANNOTATIONLINKS
public static final java.lang.String PERMS_FILTER_ANNOTATIONLINKS
- See Also:
- Constant Field Values
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details
protected Details details
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EXCITATIONFILTERLINKCOUNTPEROWNER
public static final java.lang.String EXCITATIONFILTERLINKCOUNTPEROWNER
- See Also:
- Constant Field Values
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EXCITATIONFILTERLINK
public static final java.lang.String EXCITATIONFILTERLINK
- See Also:
- Constant Field Values
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DICHROIC
public static final java.lang.String DICHROIC
- See Also:
- Constant Field Values
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EMISSIONFILTERLINKCOUNTPEROWNER
public static final java.lang.String EMISSIONFILTERLINKCOUNTPEROWNER
- See Also:
- Constant Field Values
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EMISSIONFILTERLINK
public static final java.lang.String EMISSIONFILTERLINK
- See Also:
- Constant Field Values
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ANNOTATIONLINKSCOUNTPEROWNER
public static final java.lang.String ANNOTATIONLINKSCOUNTPEROWNER
- See Also:
- Constant Field Values
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ANNOTATIONLINKS
public static final java.lang.String ANNOTATIONLINKS
- See Also:
- Constant Field Values
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DETAILS
public static final java.lang.String DETAILS
- See Also:
- Constant Field Values
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FIELDS
public static final java.util.Set<java.lang.String> FIELDS
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_dynamicFields
protected java.util.Map<java.lang.String,java.lang.Object> _dynamicFields
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_loaded
protected boolean _loaded
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Method Detail
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getId
@DocumentId public java.lang.Long getId()
The DB unique identifier for this object. You are not responsible for setting the id; however, it can be useful for creating "unloaded" versions of your objects. Each top-level entity contains an id field of type long. For all objects returned from the server, this value will be non-null, which doesn't necessarily hold for the other fields.
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setId
public void setId(java.lang.Long id)
Description copied from interface:IObject
usually unneeded. Ids are managed by the backend.
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getVersion
public java.lang.Integer getVersion()
This version number is controlled by the database for optimisitic locking.- Specified by:
getVersion
in interfaceIMutable
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setVersion
public void setVersion(java.lang.Integer version)
Description copied from interface:IMutable
use with caution. In general, the version should only be altered by the backend. In the best case, an exception will be thrown for a version not equal to the current DB value. In the worst (though rare) case, the new version could match the database, and override optimistic lock checks that are supposed to prevent data loss.- Specified by:
setVersion
in interfaceIMutable
- Parameters:
version
- Value for this objects version.
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getExcitationFilterLink
protected java.util.List<LightPathExcitationFilterLink> getExcitationFilterLink()
returns excitationFilterLink . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many List ome.model.acquisition.LightPath.excitationFilterLink (ome.model.acquisition.LightPathExcitationFilterLink) Values are indexed by the column "index" on ome.model.acquisition.LightPathExcitationFilterLink
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setExcitationFilterLink
protected void setExcitationFilterLink(java.util.List<LightPathExcitationFilterLink> excitationFilterLink)
setter for excitationFilterLink should be avoided. Does not fulfill normal semantics.
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sizeOfExcitationFilterLink
public int sizeOfExcitationFilterLink()
returns the size of excitationFilterLink. If less than zero, the Set was null.
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iterateExcitationFilterLink
public java.util.Iterator<LightPathExcitationFilterLink> iterateExcitationFilterLink()
should be used rather than accessing the excitationFilterLink set directly. This method will never return null, but rather will return an instance ofEmptyIterator
. To test for a null collection, see ofsizeOfExcitationFilterLink()
is less than zero.
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unmodifiableExcitationFilterLink
public java.util.Collection<LightPathExcitationFilterLink> unmodifiableExcitationFilterLink()
Returns an unmodifiable collection-view
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collectExcitationFilterLink
public <E> java.util.List<E> collectExcitationFilterLink(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.acquisition.LightPathExcitationFilterLink while collecting the results. Ifblock == null
, then the iterator values themselves are collected. This method usesiterateExcitationFilterLink()
internally and so will return a value even if the underlying collection is null.
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addLightPathExcitationFilterLink
public void addLightPathExcitationFilterLink(LightPathExcitationFilterLink target)
use instead of setExcitationFilterLink . Makes the necessary call on ome.model.acquisition.LightPathExcitationFilterLink as well.
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addLightPathExcitationFilterLinkSet
public void addLightPathExcitationFilterLinkSet(java.util.Collection<LightPathExcitationFilterLink> targets)
use like addLightPathExcitationFilterLink.
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removeLightPathExcitationFilterLink
public void removeLightPathExcitationFilterLink(LightPathExcitationFilterLink target)
removes a single element from this set and makes the inverse call on ome.model.acquisition.LightPathExcitationFilterLink
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removeLightPathExcitationFilterLinkSet
public void removeLightPathExcitationFilterLinkSet(java.util.Collection<LightPathExcitationFilterLink> targets)
use like removeLightPathExcitationFilterLink
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getLightPathExcitationFilterLink
public LightPathExcitationFilterLink getLightPathExcitationFilterLink(int index) throws java.lang.IndexOutOfBoundsException
Gets the ome.model.acquisition.LightPathExcitationFilterLink at the given index.- Throws:
java.lang.IndexOutOfBoundsException
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setLightPathExcitationFilterLink
public LightPathExcitationFilterLink setLightPathExcitationFilterLink(int index, LightPathExcitationFilterLink element) throws java.lang.IndexOutOfBoundsException
Sets the ome.model.acquisition.LightPathExcitationFilterLink at the given index. Adheres to theList.set(int, Object)
contract. To extend the list, useaddLightPathExcitationFilterLink(LightPathExcitationFilterLink)
.- Throws:
java.lang.IndexOutOfBoundsException
- See Also:
List.set(int, Object)
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getPrimaryLightPathExcitationFilterLink
public LightPathExcitationFilterLink getPrimaryLightPathExcitationFilterLink() throws java.lang.IndexOutOfBoundsException
Gets the first element of excitationFilterLink which can be interpreted as the primary or default element in some situations. If there is not first element, anIndexOutOfBoundsException
is throws. This method will also throw anApiUsageException
if the collection is unloaded. SeesizeOfExcitationFilterLink()
for more information.- Throws:
java.lang.IndexOutOfBoundsException
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setPrimaryLightPathExcitationFilterLink
public LightPathExcitationFilterLink setPrimaryLightPathExcitationFilterLink(LightPathExcitationFilterLink element) throws java.lang.IndexOutOfBoundsException
Swaps the first element of excitationFilterLink with the first instance of the given element. If the given element is not in the list, anIndexOutOfBoundsException
will be thrown. Returns the swapped element. This method will also throw anApiUsageException
if the collection is unloaded. SeesizeOfExcitationFilterLink()
for more information.- Throws:
java.lang.IndexOutOfBoundsException
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linkExcitationFilter
public LightPathExcitationFilterLink linkExcitationFilter(Filter addition)
Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink . This entails changing our excitationFilterLink Set, creating a new ome.model.acquisition.LightPathExcitationFilterLink and calling linkExcitationFilter on the ome.model.acquisition.Filter.
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addLightPathExcitationFilterLink
public void addLightPathExcitationFilterLink(LightPathExcitationFilterLink link, boolean bothSides)
Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addLightPathExcitationFilterLink will be called on the addition if it is loaded
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linkedExcitationFilterIterator
public java.util.Iterator<Filter> linkedExcitationFilterIterator()
provides an iterator over the parent values of the excitationFilterLink. Like with most Collection iterators, modifications to the underlying collection while iterating will result in anConcurrentModificationException
. UselinkedExcitationFilterList()
instead.
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findLightPathExcitationFilterLink
public java.util.Set<LightPathExcitationFilterLink> findLightPathExcitationFilterLink(Filter target)
find all ome.model.acquisition.LightPathExcitationFilterLink which have the argument as their child.
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linkedExcitationFilterList
public java.util.List<Filter> linkedExcitationFilterList()
produces aList
-copy of the underlying collection. Unlike,linkedExcitationFilterIterator()
, while using the returnedList
, modifications can be made to the underlying collection without throwingConcurrentModificationException
.
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eachLinkedExcitationFilter
public <E> java.util.List<E> eachLinkedExcitationFilter(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results. Ifblock == null
, then the iterator values themselves are collected.
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unlinkExcitationFilter
public void unlinkExcitationFilter(Filter removal)
unlinks all ome.model.acquisition.Filter instances from this instance.
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removeLightPathExcitationFilterLink
public void removeLightPathExcitationFilterLink(LightPathExcitationFilterLink link, boolean bothSides)
removes the given LightPathExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.
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clearExcitationFilterLinks
public void clearExcitationFilterLinks()
clears the set.
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setExcitationFilterLinkCountPerOwner
protected void setExcitationFilterLinkCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
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getExcitationFilterLinkCountPerOwner
public java.util.Map<java.lang.Long,java.lang.Long> getExcitationFilterLinkCountPerOwner()
If fetched, returns the count(*) of ome.model.acquisition.LightPathExcitationFilterLink that a user has. If unfetched, returns null. No entries in the collection should be null.
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getDichroic
public Dichroic getDichroic()
Many-to-one field ome.model.acquisition.LightPath.dichroic (ome.model.acquisition.Dichroic)
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setDichroic
public void setDichroic(Dichroic dichroic)
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getEmissionFilterLink
protected java.util.Set<LightPathEmissionFilterLink> getEmissionFilterLink()
returns emissionFilterLink . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.acquisition.LightPath.emissionFilterLink (ome.model.acquisition.LightPathEmissionFilterLink)
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setEmissionFilterLink
protected void setEmissionFilterLink(java.util.Set<LightPathEmissionFilterLink> emissionFilterLink)
setter for emissionFilterLink should be avoided. Does not fulfill normal semantics.
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sizeOfEmissionFilterLink
public int sizeOfEmissionFilterLink()
returns the size of emissionFilterLink. If less than zero, the Set was null.
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iterateEmissionFilterLink
public java.util.Iterator<LightPathEmissionFilterLink> iterateEmissionFilterLink()
should be used rather than accessing the emissionFilterLink set directly. This method will never return null, but rather will return an instance ofEmptyIterator
. To test for a null collection, see ofsizeOfEmissionFilterLink()
is less than zero.
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unmodifiableEmissionFilterLink
public java.util.Collection<LightPathEmissionFilterLink> unmodifiableEmissionFilterLink()
Returns an unmodifiable collection-view
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collectEmissionFilterLink
public <E> java.util.List<E> collectEmissionFilterLink(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.acquisition.LightPathEmissionFilterLink while collecting the results. Ifblock == null
, then the iterator values themselves are collected. This method usesiterateEmissionFilterLink()
internally and so will return a value even if the underlying collection is null.
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addLightPathEmissionFilterLink
public void addLightPathEmissionFilterLink(LightPathEmissionFilterLink target)
use instead of setEmissionFilterLink . Makes the necessary call on ome.model.acquisition.LightPathEmissionFilterLink as well.
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addLightPathEmissionFilterLinkSet
public void addLightPathEmissionFilterLinkSet(java.util.Collection<LightPathEmissionFilterLink> targets)
use like addLightPathEmissionFilterLink.
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removeLightPathEmissionFilterLink
public void removeLightPathEmissionFilterLink(LightPathEmissionFilterLink target)
removes a single element from this set and makes the inverse call on ome.model.acquisition.LightPathEmissionFilterLink
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removeLightPathEmissionFilterLinkSet
public void removeLightPathEmissionFilterLinkSet(java.util.Collection<LightPathEmissionFilterLink> targets)
use like removeLightPathEmissionFilterLink
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linkEmissionFilter
public LightPathEmissionFilterLink linkEmissionFilter(Filter addition)
Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink . This entails changing our emissionFilterLink Set, creating a new ome.model.acquisition.LightPathEmissionFilterLink and calling linkEmissionFilter on the ome.model.acquisition.Filter.
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addLightPathEmissionFilterLink
public void addLightPathEmissionFilterLink(LightPathEmissionFilterLink link, boolean bothSides)
Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addLightPathEmissionFilterLink will be called on the addition if it is loaded
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linkedEmissionFilterIterator
public java.util.Iterator<Filter> linkedEmissionFilterIterator()
provides an iterator over the parent values of the emissionFilterLink. Like with most Collection iterators, modifications to the underlying collection while iterating will result in anConcurrentModificationException
. UselinkedEmissionFilterList()
instead.
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findLightPathEmissionFilterLink
public java.util.Set<LightPathEmissionFilterLink> findLightPathEmissionFilterLink(Filter target)
find all ome.model.acquisition.LightPathEmissionFilterLink which have the argument as their child.
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linkedEmissionFilterList
public java.util.List<Filter> linkedEmissionFilterList()
produces aList
-copy of the underlying collection. Unlike,linkedEmissionFilterIterator()
, while using the returnedList
, modifications can be made to the underlying collection without throwingConcurrentModificationException
.
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eachLinkedEmissionFilter
public <E> java.util.List<E> eachLinkedEmissionFilter(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results. Ifblock == null
, then the iterator values themselves are collected.
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unlinkEmissionFilter
public void unlinkEmissionFilter(Filter removal)
unlinks all ome.model.acquisition.Filter instances from this instance.
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removeLightPathEmissionFilterLink
public void removeLightPathEmissionFilterLink(LightPathEmissionFilterLink link, boolean bothSides)
removes the given LightPathEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.
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clearEmissionFilterLinks
public void clearEmissionFilterLinks()
clears the set.
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setEmissionFilterLinkCountPerOwner
protected void setEmissionFilterLinkCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
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getEmissionFilterLinkCountPerOwner
public java.util.Map<java.lang.Long,java.lang.Long> getEmissionFilterLinkCountPerOwner()
If fetched, returns the count(*) of ome.model.acquisition.LightPathEmissionFilterLink that a user has. If unfetched, returns null. No entries in the collection should be null.
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getAnnotationLinks
protected java.util.Set<LightPathAnnotationLink> getAnnotationLinks()
returns annotationLinks . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.acquisition.LightPath.annotationLinks (ome.model.annotations.LightPathAnnotationLink)
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setAnnotationLinks
protected void setAnnotationLinks(java.util.Set<LightPathAnnotationLink> annotationLinks)
setter for annotationLinks should be avoided. Does not fulfill normal semantics.
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sizeOfAnnotationLinks
public int sizeOfAnnotationLinks()
returns the size of annotationLinks. If less than zero, the Set was null.- Specified by:
sizeOfAnnotationLinks
in interfaceIAnnotated
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iterateAnnotationLinks
public java.util.Iterator<LightPathAnnotationLink> iterateAnnotationLinks()
should be used rather than accessing the annotationLinks set directly. This method will never return null, but rather will return an instance ofEmptyIterator
. To test for a null collection, see ofsizeOfAnnotationLinks()
is less than zero.- Specified by:
iterateAnnotationLinks
in interfaceIAnnotated
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unmodifiableAnnotationLinks
public java.util.Collection<LightPathAnnotationLink> unmodifiableAnnotationLinks()
Returns an unmodifiable collection-view- Specified by:
unmodifiableAnnotationLinks
in interfaceIAnnotated
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collectAnnotationLinks
public <E> java.util.List<E> collectAnnotationLinks(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.annotations.LightPathAnnotationLink while collecting the results. Ifblock == null
, then the iterator values themselves are collected. This method usesiterateAnnotationLinks()
internally and so will return a value even if the underlying collection is null.- Specified by:
collectAnnotationLinks
in interfaceIAnnotated
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addLightPathAnnotationLink
public void addLightPathAnnotationLink(LightPathAnnotationLink target)
use instead of setAnnotationLinks . Makes the necessary call on ome.model.annotations.LightPathAnnotationLink as well.
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addLightPathAnnotationLinkSet
public void addLightPathAnnotationLinkSet(java.util.Collection<LightPathAnnotationLink> targets)
use like addLightPathAnnotationLink.
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removeLightPathAnnotationLink
public void removeLightPathAnnotationLink(LightPathAnnotationLink target)
removes a single element from this set and makes the inverse call on ome.model.annotations.LightPathAnnotationLink
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removeLightPathAnnotationLinkSet
public void removeLightPathAnnotationLinkSet(java.util.Collection<LightPathAnnotationLink> targets)
use like removeLightPathAnnotationLink
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linkAnnotation
public LightPathAnnotationLink linkAnnotation(Annotation addition)
Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks . This entails changing our annotationLinks Set, creating a new ome.model.annotations.LightPathAnnotationLink and calling linkAnnotation on the ome.model.annotations.Annotation.- Specified by:
linkAnnotation
in interfaceIAnnotated
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addLightPathAnnotationLink
public void addLightPathAnnotationLink(LightPathAnnotationLink link, boolean bothSides)
Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks, allowing for recursion -- whether or not addLightPathAnnotationLink will be called on the addition if it is loaded
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linkedAnnotationIterator
public java.util.Iterator<Annotation> linkedAnnotationIterator()
provides an iterator over the parent values of the annotationLinks. Like with most Collection iterators, modifications to the underlying collection while iterating will result in anConcurrentModificationException
. UselinkedAnnotationList()
instead.- Specified by:
linkedAnnotationIterator
in interfaceIAnnotated
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findLightPathAnnotationLink
public java.util.Set<LightPathAnnotationLink> findLightPathAnnotationLink(Annotation target)
find all ome.model.annotations.LightPathAnnotationLink which have the argument as their child.
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linkedAnnotationList
public java.util.List<Annotation> linkedAnnotationList()
produces aList
-copy of the underlying collection. Unlike,linkedAnnotationIterator()
, while using the returnedList
, modifications can be made to the underlying collection without throwingConcurrentModificationException
.- Specified by:
linkedAnnotationList
in interfaceIAnnotated
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eachLinkedAnnotation
public <E> java.util.List<E> eachLinkedAnnotation(CBlock<E> block)
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results. Ifblock == null
, then the iterator values themselves are collected.- Specified by:
eachLinkedAnnotation
in interfaceIAnnotated
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unlinkAnnotation
public void unlinkAnnotation(Annotation removal)
unlinks all ome.model.annotations.Annotation instances from this instance.- Specified by:
unlinkAnnotation
in interfaceIAnnotated
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removeLightPathAnnotationLink
public void removeLightPathAnnotationLink(LightPathAnnotationLink link, boolean bothSides)
removes the given LightPathAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.
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clearAnnotationLinks
public void clearAnnotationLinks()
clears the set.- Specified by:
clearAnnotationLinks
in interfaceIAnnotated
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setAnnotationLinksCountPerOwner
protected void setAnnotationLinksCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
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getAnnotationLinksCountPerOwner
public java.util.Map<java.lang.Long,java.lang.Long> getAnnotationLinksCountPerOwner()
If fetched, returns the count(*) of ome.model.annotations.LightPathAnnotationLink that a user has. If unfetched, returns null. No entries in the collection should be null.
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getDetails
public Details getDetails()
The details of this object correspond to low-level system information. Owner, permissions, Details is always guaranteed to be non-null, unless the user actively nulls it. Every entity also contains a Detail reference, which doesn't refer to a separate table but rather to a collection of fields collected into a Hibernate "component" which is embedded in the object. HQL queries which refer to the Details component cannot directly fetch the entity like this: select o from Object join fetch o.details but rather each field of the Details instance must be explicitly joined: select o from Object join fetch o.details.owner It should also be noted that not all types have all the fields which are present on Details. For example, select e from Experimenter e join fetch e.details.owner will fail. Experimenter has no owner, for obvious reasons. Note: subclasses of this class will return a subclass of theDetails
type.- Specified by:
getDetails
in interfaceIObject
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setDetails
protected void setDetails(Details details)
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isValid
public boolean isValid()
Description copied from interface:IObject
calls the class-specific validator for this instance and returns the value fromValidation.isValid()
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validate
public Validation validate()
Description copied from interface:IObject
calls the class-specific validator for this instance and returns theValidation
object.
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newInstance
public LightPath newInstance()
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proxy
public LightPath proxy()
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acceptFilter
public boolean acceptFilter(Filter __filter)
- Specified by:
acceptFilter
in interfaceFilterable
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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fields
public java.util.Set<java.lang.String> fields()
Description copied from interface:IObject
returns a Set of field names that belong to this class
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retrieve
public java.lang.Object retrieve(java.lang.String field)
Description copied from interface:IObject
retrieves a value from this instance. Values forfield
which match a field of this instance will be delegated to the accessors. Otherwise, values will be retrieved from a lazy-loaded map filled by calls toIObject.putAt(String, Object)
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putAt
public void putAt(java.lang.String field, java.lang.Object value)
Description copied from interface:IObject
stores a value in this instance. Values forfield
which match a field of this instance will be delegated to the accessors. Otherwise, values will be stored in a lazy-loaded map.
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isLoaded
public boolean isLoaded()
Description copied from interface:IObject
transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
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errorIfUnloaded
protected void errorIfUnloaded()
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unload
public void unload()
Description copied from interface:IObject
set the loaded field to false, and set all non-ID fields to null. Subsequent calls to all accessors other than getId/setId will throw an ApiUsageException
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getGraphHolder
public final GraphHolder getGraphHolder()
Description copied from interface:IObject
retrieves theGraphHolder
for this entity. If the GraphHolder has not been actively set, a new one will be instatiated.- Specified by:
getGraphHolder
in interfaceIObject
- Returns:
- Non-null GraphHolder
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throwNullCollectionException
protected void throwNullCollectionException(java.lang.String propertyName)
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