| Class |
Description |
| ACLCreateViolation |
User does not have permissions to perform given action.
|
| ACLDeleteViolation |
User does not have permissions to perform given action.
|
| ACLLoadViolation |
User does not have permissions to perform given action.
|
| ACLUpdateViolation |
User does not have permissions to perform given action.
|
| ACLViolation |
User has attempted an action which is not permitted by the
Permissions of a given instance. |
| AcquisitionMode |
|
| AcquisitionMode.Details |
|
| AdminPrivilege |
|
| AdminPrivilege.Details |
|
| AffineTransform |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| AffineTransform.Details |
|
| Annotation |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Annotation.Details |
|
| AnnotationAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| AnnotationAnnotationLink.Details |
|
| ApiUsageException |
Alerts a user to a misuse of an Omero method call.
|
| Arc |
|
| ArcType |
|
| ArcType.Details |
|
| AuthenticationException |
Invalid username and/or credential provided.
|
| BasicAnnotation |
|
| BigResult |
Checked exception which is thrown from unit methods which can possibly
overflow.
|
| Binning |
|
| Binning.Details |
|
| BooleanAnnotation |
|
| CBlock<E> |
Block template used to "C"ollect the results of some function called on each
IObject in a collection. |
| Channel |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Channel.Details |
|
| ChannelAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ChannelAnnotationLink.Details |
|
| ChannelBinding |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ChannelBinding.Details |
|
| ChecksumAlgorithm |
|
| ChecksumAlgorithm.Details |
|
| CodomainMapContext |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| CodomainMapContext.Details |
|
| CollectedACLViolations |
User has attempted an action which is not permitted by the
Permissions of a given instance. |
| CommentAnnotation |
|
| ConcurrencyException |
Error due to simultaneous access of some resource.
|
| ConfiguredAnalyzer |
A full-text search analyzer usable by the OMERO model.
|
| ContextFilter |
modified (hierarchical) visitor pattern.
|
| ContrastMethod |
|
| ContrastMethod.Details |
|
| ContrastStretchingContext |
|
| Conversion |
Base-functor like object which can be used for preparing complex
equations for converting from one unit to another.
|
| Conversion.Add |
Sums all Conversion instances via BigDecimal.add(BigDecimal). |
| Conversion.Int |
Simply is a representation of a possibly large integer.
|
| Conversion.Mul |
Multiplies all Conversion instances via
BigDecimal.multiply(BigDecimal). |
| Conversion.Pow |
Exponentiates two Conversion instances via
BigDecimal.pow(int). |
| Conversion.Rat |
Divides two Conversion instances via
BigDecimal.divide(BigDecimal, MathContext). |
| Conversion.Sym |
|
| Correction |
|
| Correction.Details |
|
| CountCollectionPersister |
CollectionPersister which knows how to handle the count views
generated by dsl/resources/ome/dsl/views.dm.
|
| Counter |
A simple integral counter that can be incremented.
|
| DatabaseBusyException |
No connections are currently available for the database.
|
| Dataset |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Dataset.Details |
|
| DatasetAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| DatasetAnnotationLink.Details |
|
| DatasetImageLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| DatasetImageLink.Details |
|
| DBPatch |
|
| DBPatch.Details |
|
| Details |
value type for low-level (row-level) details for all
IObject objects. |
| DetailsFieldBridge |
Delegating FieldBridge which passes the "fieldBridge" bean from the
"ome.model" Spring ApplicationContext all arguments.
|
| Detector |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Detector.Details |
|
| DetectorAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| DetectorAnnotationLink.Details |
|
| DetectorSettings |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| DetectorSettings.Details |
|
| DetectorType |
|
| DetectorType.Details |
|
| Dichroic |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Dichroic.Details |
|
| DichroicAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| DichroicAnnotationLink.Details |
|
| DimensionOrder |
|
| DimensionOrder.Details |
|
| DoubleAnnotation |
|
| ElectricPotential |
class storing both a ElectricPotential and a unit for that ElectricPotential
(e.g.
|
| Ellipse |
|
| EmptyIterator<E> |
utility iterator which does nothing as quickly as possible.
|
| Event |
|
| Event.Details |
|
| EventLog |
|
| EventLog.Details |
|
| EventType |
|
| EventType.Details |
|
| Experiment |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Experiment.Details |
|
| Experimenter |
|
| Experimenter.Details |
|
| ExperimenterAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ExperimenterAnnotationLink.Details |
|
| ExperimenterGroup |
|
| ExperimenterGroup.Details |
|
| ExperimenterGroupAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ExperimenterGroupAnnotationLink.Details |
|
| ExperimentType |
|
| ExperimentType.Details |
|
| ExpiredCredentialException |
Correct username and credentials provided, but credentials expired.
|
| ExternalInfo |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ExternalInfo.Details |
|
| Family |
|
| Family.Details |
|
| Filament |
|
| FilamentType |
|
| FilamentType.Details |
|
| FileAnnotation |
|
| Fileset |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Fileset.Details |
|
| FilesetAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| FilesetAnnotationLink.Details |
|
| FilesetEntry |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| FilesetEntry.Details |
|
| FilesetJobLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| FilesetJobLink.Details |
|
| Filter |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Filter |
parameter to generally reduce the size of a query result set.
|
| Filter |
marks objects which can be filtered using {see FIXME }.
|
| Filter.Details |
|
| Filterable |
marks objects which can be filtered using {see FIXME }.
|
| FilterAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| FilterAnnotationLink.Details |
|
| FilterSet |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| FilterSet.Details |
|
| FilterSetEmissionFilterLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| FilterSetEmissionFilterLink.Details |
|
| FilterSetExcitationFilterLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| FilterSetExcitationFilterLink.Details |
|
| FilterType |
|
| FilterType.Details |
|
| Folder |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Folder.Details |
|
| FolderAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| FolderAnnotationLink.Details |
|
| FolderImageLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| FolderImageLink.Details |
|
| FolderRoiLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| FolderRoiLink.Details |
|
| Format |
|
| Format.Details |
|
| Frequency |
class storing both a Frequency and a unit for that Frequency
(e.g.
|
| GenericEnumType<E extends java.lang.Enum<E>> |
http://octagen.at/2014/10/postgresql-custom-data-types-enum-in-hibernate/
|
| GenericExcitationSource |
|
| GraphHolder |
holds information regarding the graph to which an IObject
belongs. |
| GroupExperimenterMap |
|
| GroupExperimenterMap.Details |
|
| GroupSecurityViolation |
Extension of SecurityViolation which signifies that the violation
in question goes against the group-based permissions introduced in 4.2. |
| IAnnotated |
|
| IAnnotationLink |
|
| IdBlock |
|
| IDetails |
simple interface for Details; currently unused. |
| IEnum |
interface for all domain enumarations.
|
| IGlobal |
marker interface for all global types, which have no IDetails fields
other than permissions. |
| ILink |
extension of IObject for building object hierarchies. |
| Illumination |
|
| Illumination.Details |
|
| Image |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Image.Details |
|
| ImageAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ImageAnnotationLink.Details |
|
| ImageUtil |
Provides helper methods for performing various things on image data.
|
| ImagingEnvironment |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ImagingEnvironment.Details |
|
| Immersion |
|
| Immersion.Details |
|
| ImportJob |
Deprecated. |
| IMutable |
interface for all mutable domain objects.
|
| IndexingJob |
|
| Instrument |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Instrument.Details |
|
| InstrumentAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| InstrumentAnnotationLink.Details |
|
| IntegrityCheckJob |
|
| InternalException |
Catchall for unknown server exceptions.
|
| IObject |
central model interface.
|
| Job |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Job.Details |
|
| JobOriginalFileLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| JobOriginalFileLink.Details |
|
| JobStatus |
|
| JobStatus.Details |
|
| Label |
|
| Laser |
|
| LaserMedium |
|
| LaserMedium.Details |
|
| LaserType |
|
| LaserType.Details |
|
| Length |
class storing both a Length and a unit for that Length
(e.g.
|
| LightEmittingDiode |
|
| LightPath |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| LightPath.Details |
|
| LightPathAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| LightPathAnnotationLink.Details |
|
| LightPathEmissionFilterLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| LightPathEmissionFilterLink.Details |
|
| LightPathExcitationFilterLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| LightPathExcitationFilterLink.Details |
|
| LightSettings |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| LightSettings.Details |
|
| LightSource |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| LightSource.Details |
|
| LightSourceAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| LightSourceAnnotationLink.Details |
|
| Line |
|
| Link |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Link.Details |
|
| ListAnnotation |
|
| LockTimeout |
Server could not acquire necessary lock.
|
| LogicalChannel |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| LogicalChannel.Details |
|
| LongAnnotation |
|
| LSID |
This class represents an LSID as used by the OME-XML data model.
|
| MapAnnotation |
|
| MapPut |
Simple bean which calls "map.put(key, object)" on
InitializingBean.afterPropertiesSet().
|
| Mask |
|
| Medium |
|
| Medium.Details |
|
| MetadataImportJob |
|
| MicrobeamManipulation |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| MicrobeamManipulation.Details |
|
| MicrobeamManipulationType |
|
| MicrobeamManipulationType.Details |
|
| Microscope |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Microscope.Details |
|
| MicroscopeType |
|
| MicroscopeType.Details |
|
| MissingPyramidException |
|
| ModelBased |
used for reverse mapping.
|
| ModelMapper |
|
| NamedValue |
class to store a single value in an ordered list.
|
| Namespace |
|
| Namespace.Details |
|
| NamespaceAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| NamespaceAnnotationLink.Details |
|
| Node |
|
| Node.Details |
|
| NodeAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| NodeAnnotationLink.Details |
|
| NumericAnnotation |
|
| Objective |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Objective.Details |
|
| ObjectiveAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ObjectiveAnnotationLink.Details |
|
| ObjectiveSettings |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ObjectiveSettings.Details |
|
| OptimisticLockException |
Signifies that another user has updated or deleted a given object, more
specifically a query of the form : "<action> where id = ? and version = ?"
applied to no rows.
|
| Options |
Simple options container.
|
| OriginalFile |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| OriginalFile.Details |
|
| OriginalFileAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| OriginalFileAnnotationLink.Details |
|
| OTF |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| OTF.Details |
|
| OverUsageException |
More specific ApiUsageException, in
that the current use of the OMERO API could overwhelm the server and has been blocked. |
| Parameters |
|
| ParseJob |
|
| Path |
Deprecated. |
| Period |
parameter which defines the ordering as well as the start and offset for a
List-valued result set.
|
| PermDetails |
wrapper class which can be used in HQL queries to properly load
the full context for a permissions object.
|
| PermissionMismatchGroupSecurityViolation |
Extension of GroupSecurityViolation signalling that an object
has a permission which does not match the group permissions. |
| Permissions |
class responsible for storing all Right/Role-based information for entities
as well as various flags for the containing Details instance. |
| Permissions.Flag |
Currently unused.
|
| Permissions.Right |
enumeration of granted rights.
|
| Permissions.Role |
enumeration of currently active roles.
|
| PhotometricInterpretation |
|
| PhotometricInterpretation.Details |
|
| PixelData |
Represents a block of pixel data.
|
| PixelDataJob |
|
| Pixels |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Pixels.Details |
|
| PixelsOriginalFileMap |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| PixelsOriginalFileMap.Details |
|
| PixelsType |
|
| PixelsType.Details |
|
| PlaneInfo |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| PlaneInfo.Details |
|
| PlaneInfoAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| PlaneInfoAnnotationLink.Details |
|
| PlaneSlicingContext |
|
| Plate |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Plate.Details |
|
| PlateAcquisition |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| PlateAcquisition.Details |
|
| PlateAcquisitionAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| PlateAcquisitionAnnotationLink.Details |
|
| PlateAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| PlateAnnotationLink.Details |
|
| Point |
|
| Polygon |
|
| Polyline |
|
| PostgresqlDialect |
select i from Image i where i.id in (:ids)
becomes
select i from Image i where i.id in (select id from temp_ids());
|
| PostgresSqlAction |
|
| Power |
class storing both a Power and a unit for that Power
(e.g.
|
| Pressure |
class storing both a Pressure and a unit for that Pressure
(e.g.
|
| Primitive |
marker interface for all non-filterable types.
|
| PrivilegedStringType |
A Hibernate type for string-valued properties where only privileged readers see non-null values.
|
| PrivilegedStringType.FilteredFullAdmin |
String type for which users read null except for full administrators.
|
| PrivilegedStringType.FilteredFullAdminHidden |
String type for which users read a dummy value except for full administrators.
|
| PrivilegedStringType.FilteredFullAdminUUID |
String type for which users read a dummy UUID except for full administrators.
|
| PrivilegedStringType.FilteredRelatedUser |
String type for which users read null except for (potentially) related users.
|
| PrivilegedStringType.FilteredRelatedUserHidden |
String type for which users read a dummy value except for (potentially) related users.
|
| PrivilegedStringTypeDescriptor |
|
| PrivilegedStringTypeDescriptor.Filter |
The privileged string filters that may be applied.
|
| PrivilegedStringTypeDescriptor.FilteredFullAdmin |
|
| PrivilegedStringTypeDescriptor.FilteredFullAdminHidden |
|
| PrivilegedStringTypeDescriptor.FilteredFullAdminUUID |
|
| PrivilegedStringTypeDescriptor.FilteredRelatedUser |
|
| PrivilegedStringTypeDescriptor.FilteredRelatedUserHidden |
|
| Project |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Project.Details |
|
| ProjectAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ProjectAnnotationLink.Details |
|
| ProjectDatasetLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ProjectDatasetLink.Details |
|
| ProjectionAxis |
|
| ProjectionAxis.Details |
|
| ProjectionDef |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ProjectionDef.Details |
|
| ProjectionType |
|
| ProjectionType.Details |
|
| PsqlStrings |
|
| Pulse |
|
| Pulse.Details |
|
| QuantumDef |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| QuantumDef.Details |
|
| QueryParameter |
arbitrary query parameter used by ome.api.IQuery.
|
| RdfPrinter |
walks an object graph producing RDF-like output.
|
| ReadOnlyGroupSecurityViolation |
Extension of GroupSecurityViolation signalling that an admin or
group owner has tried to make a modification in a private group OR that
the member of a read-only group has tried to do the same. |
| Reagent |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Reagent.Details |
|
| ReagentAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ReagentAnnotationLink.Details |
|
| Rectangle |
|
| RemovedSessionException |
Client attempted to access a session which has either
expired or been closed manually. |
| RenderingDef |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| RenderingDef.Details |
|
| RenderingModel |
|
| RenderingModel.Details |
|
| ResourceError |
Represents a incorrectible/unforseeable event within the server that lead to
a failure of a process.
|
| ReverseIntensityContext |
|
| ReverseModelMapper |
|
| Roi |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Roi.Details |
|
| RoiAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| RoiAnnotationLink.Details |
|
| RootException |
abstract superclass of all Omero exceptions.
|
| Screen |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Screen.Details |
|
| ScreenAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ScreenAnnotationLink.Details |
|
| ScreenPlateLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ScreenPlateLink.Details |
|
| ScriptJob |
|
| SecurityViolation |
User does not have permissions to perform given action.
|
| Session |
|
| Session.Details |
|
| SessionAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| SessionAnnotationLink.Details |
|
| SessionException |
Base session related exception.
|
| SessionTimeoutException |
The given session has expired and can no longer be used.
|
| ShallowCopy |
|
| Shape |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Shape.Details |
|
| ShapeAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| ShapeAnnotationLink.Details |
|
| Share |
|
| ShareMember |
|
| ShareMember.Details |
|
| SqlAction |
Single wrapper for all JDBC activities.
|
| SqlAction.DeleteLog |
Record-class which matches _fs_deletelog.
|
| SqlAction.IdRowMapper |
|
| SqlAction.Impl |
Base implementation which can be used
|
| SqlAction.LoggingSqlAction |
|
| SqlAction.StringRowMapper |
|
| StageLabel |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| StageLabel.Details |
|
| StatsInfo |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| StatsInfo.Details |
|
| TableIdGenerator |
OMERO-specific id generation strategy.
|
| TagAnnotation |
|
| Temperature |
class storing both a Temperature and a unit for that Temperature
(e.g.
|
| TermAnnotation |
|
| TextAnnotation |
|
| Thumbnail |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Thumbnail.Details |
|
| ThumbnailGenerationJob |
|
| Time |
class storing both a Time and a unit for that Time
(e.g.
|
| TimestampAnnotation |
|
| Token |
authorization token to allow/revoke certain privileges.
|
| TransmittanceRange |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| TransmittanceRange.Details |
|
| TryAgain |
Background processing necessary to process the request.
|
| TypeAnnotation |
|
| Unit |
marker interface for all of ome.model.unit types.
|
| UnitEnum |
marker interface for all of ome.model.unit enums.
|
| UNITS |
|
| UnitsElectricPotential |
|
| UnitsFrequency |
|
| UnitsLength |
|
| UnitsPower |
|
| UnitsPressure |
|
| UnitsTemperature |
|
| UnitsTime |
|
| UploadJob |
|
| Utils |
various tools needed throughout Omero.
|
| Validation |
collector for Model-validation status.
|
| ValidationException |
More specific ApiUsageException, in
that the specification of your data as outlined in the OME specification is
incorrect. |
| Validator |
tests of model objects for validity.
|
| Well |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| Well.Details |
|
| WellAnnotationLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| WellAnnotationLink.Details |
|
| WellReagentLink |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| WellReagentLink.Details |
|
| WellSample |
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
|
| WellSample.Details |
|
| XmlAnnotation |
|