Package omero.grid

Class _ManagedRepositoryTie

    • Constructor Detail

      • _ManagedRepositoryTie

        public _ManagedRepositoryTie()

    • Method Detail

      • ice_delegate

        public java.lang.Object ice_delegate()
        Specified by:
        ice_delegate in interface Ice.TieBase

      • ice_delegate

        public void ice_delegate​(java.lang.Object delegate)
        Specified by:
        ice_delegate in interface Ice.TieBase

      • equals

        public boolean equals​(java.lang.Object rhs)
        Overrides:
        equals in class java.lang.Object

      • hashCode

        public int hashCode()
        Overrides:
        hashCode in class java.lang.Object

      • importPaths

        public ImportProcessPrx importPaths​(java.util.List<java.lang.String> filePaths,
                                    Ice.Current __current)
                             throws ServerError
        Description copied from interface: _ManagedRepositoryOperations
        For clients without access to Bio-Formats, the simplified importPaths method allows passing solely the absolute path of the files to be uploaded (no directories) and all configuration happens server-side. Much of the functionality provided via Fileset and ImportSettings is of course lost.
        Specified by:
        importPaths in interface _ManagedRepositoryOperations
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • listChecksumAlgorithms

        public java.util.List<ChecksumAlgorithm> listChecksumAlgorithms​(Ice.Current __current)
        Description copied from interface: _ManagedRepositoryOperations
        Return the list of checksum algorithms supported by this repository for verifying the integrity of uploaded files. They are named as ""algorithm-integer"", integer being the bit width of the resulting hash code. It is possible for the same algorithm to be offered with different bit widths. They are listed in descending order of preference, as set by the server administrator, and any of them may be specified for ImportSettings.checksumAlgorithm.
        Specified by:
        listChecksumAlgorithms in interface _ManagedRepositoryOperations
        Parameters:
        __current - The Current object for the invocation.

      • listImports

        public java.util.List<ImportProcessPrx> listImports​(Ice.Current __current)
                                             throws ServerError
        Description copied from interface: _ManagedRepositoryOperations
        List imports that are currently running in this importer. These will be limited based on user/group membership for the Fileset object which is being created by the import. If the user has write permissions for the fileset, then the import will be included.
        Specified by:
        listImports in interface _ManagedRepositoryOperations
        Parameters:
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • setChecksumAlgorithm

        public java.util.List<java.lang.Long> setChecksumAlgorithm​(ChecksumAlgorithm hasher,
                                                           java.util.List<java.lang.Long> ids,
                                                           Ice.Current __current)
                                                    throws ServerError
        Description copied from interface: _ManagedRepositoryOperations
        Set the checksum algorithm for the original files identified by the given IDs and calculate their checksum accordingly. The files must be in this repository. Existing checksums are checked before being changed. If a checksum does not match, ServerError will be thrown; in this case some other files may already have had their checksum algorithm set. Returns the IDs of the original files that did not already have a checksum set for the given algorithm.
        Specified by:
        setChecksumAlgorithm in interface _ManagedRepositoryOperations
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • verifyChecksums

        public java.util.List<java.lang.Long> verifyChecksums​(java.util.List<java.lang.Long> ids,
                                                      Ice.Current __current)
                                               throws ServerError
        Description copied from interface: _ManagedRepositoryOperations
        Verify the checksum for the original files identified by the given IDs. The files must be in this repository. Returns the IDs of the original files whose checksums do not match the file on disk.
        Specified by:
        verifyChecksums in interface _ManagedRepositoryOperations
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • deletePaths

        public HandlePrx deletePaths​(java.lang.String[] paths,
                             boolean recursively,
                             boolean force,
                             Ice.Current __current)
                      throws ServerError
        Description copied from interface: _RepositoryOperations
        Delete several individual paths. Internally, this converts all of the paths into a single Delete2 command and submits it. If a ""recursively"" is true, then directories will be searched and all of their contained files will be placed before them in the delete order. When the directory is removed from the database, it will removed from the filesystem if and only if it is empty. If ""recursively"" is false, then the delete will produce an error according to the ""force"" flag. If ""force"" is false, this method attempts the delete of all given paths in a single transaction, and any failure will cause the entire transaction to fail. If ""force"" is true, however, then all the other deletes will succeed. which could possibly leave dangling files within no longer extant directories.
        Specified by:
        deletePaths in interface _RepositoryOperations
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • file

        public RawFileStorePrx file​(java.lang.String path,
                            java.lang.String mode,
                            Ice.Current __current)
                     throws ServerError
        Description copied from interface: _RepositoryOperations
        Returns a special RawFileStore which permits only the operations set out in the options string ""wb"", ""a+"", etc. FIXME: Initially only ""r"" and ""rw"" are supported as these are handled directly by RandomAccessFile and so don't break the current implementation. Any call to that tries to break the options will throw an ApiUsageException. If a file exists at the given path, a ValidationException will be thrown.
        Specified by:
        file in interface _RepositoryOperations
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • fileExists

        public boolean fileExists​(java.lang.String path,
                          Ice.Current __current)
                   throws ServerError
        Description copied from interface: _RepositoryOperations
        Returns true if the file or path exists within the repository. In other words, if a call on `dirname path` to listFiles would return an object for this path.
        Specified by:
        fileExists in interface _RepositoryOperations
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • list

        public java.util.List<java.lang.String> list​(java.lang.String path,
                                             Ice.Current __current)
                                      throws ServerError
        Description copied from interface: _RepositoryOperations
        Returns a set of strings naming the files and directories in the directory denoted by an abstract pathname.
        Specified by:
        list in interface _RepositoryOperations
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • listFiles

        public java.util.List<OriginalFile> listFiles​(java.lang.String path,
                                              Ice.Current __current)
                                       throws ServerError
        Description copied from interface: _RepositoryOperations
        Returns an array of abstract pathname objects denoting the files in the directory denoted by an abstract pathname. It is expected that at a minimum the ""name"", ""path"", ""size"" and ""mtime"" attributes will be present for each OriginalFile instance.
        Specified by:
        listFiles in interface _RepositoryOperations
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • makeDir

        public void makeDir​(java.lang.String path,
                    boolean parents,
                    Ice.Current __current)
             throws ServerError
        Description copied from interface: _RepositoryOperations
        Create a directory at the given path. If parents is true, then all preceding paths will be generated and no exception will be thrown if the directory already exists. Otherwise, all parent directories must exist in both the DB and on the filesystem and be readable.
        Specified by:
        makeDir in interface _RepositoryOperations
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • root

        public OriginalFile root​(Ice.Current __current)
                  throws ServerError
        Description copied from interface: _RepositoryOperations
        Return the OriginalFile descriptor for this Repository. It will have the path of the repository's root on the underlying filesystem.
        Specified by:
        root in interface _RepositoryOperations
        Parameters:
        __current - The Current object for the invocation.
        Throws:
        ServerError

      • treeList

        public RMap treeList​(java.lang.String path,
                     Ice.Current __current)
              throws ServerError
        Description copied from interface: _RepositoryOperations
        Similar to list but recursive and returns only primitive values for the file at each location. Guaranteed for each path is only the values id and mimetype. After a call to unwrap, the returned RMap for a call to treeList("/user_1/dir0") might look something like: 
         
 {
 "/user_1/dir0/file1.txt" :
 {
 "id":10,
 "mimetype":
 "binary",
 "size": 10000L
 },

 "/user_1/dir0/dir1" :
 {
 "id": 100,
 "mimetype": "Directory",
 "size": 0L,
 "files":
 {
 "/user_1/dir0/dir1/file1indir.txt" :
 {
 "id": 1,
 "mimetype": "png",
 "size": 500
 }
 }
 }
 }
        Specified by:
        treeList in interface _RepositoryOperations
        __current - The Current object for the invocation.
        Throws:
        ServerError