ZeissCZIReader¶
This page lists supported metadata fields for the Bio-Formats Zeiss CZI format reader.
These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.
- Of the 476 fields documented in the metadata summary table:
- The file format itself supports 158 of them (33%).
- Of those, Bio-Formats fully or partially converts 158 (100%).
Supported fields¶
- These fields are fully supported by the Bio-Formats Zeiss CZI format reader:
- Arc : LotNumber
- Arc : Manufacturer
- Arc : Model
- Arc : Power
- Arc : SerialNumber
- Channel : AcquisitionMode
- Channel : Color
- Channel : EmissionWavelength
- Channel : ExcitationWavelength
- Channel : FilterSetRef
- Channel : Fluor
- Channel : ID
- Channel : IlluminationType
- Channel : Name
- Channel : PinholeSize
- Channel : SamplesPerPixel
- Detector : AmplificationGain
- Detector : Gain
- Detector : ID
- Detector : LotNumber
- Detector : Manufacturer
- Detector : Model
- Detector : Offset
- Detector : SerialNumber
- Detector : Type
- Detector : Zoom
- DetectorSettings : Binning
- DetectorSettings : Gain
- DetectorSettings : ID
- Dichroic : ID
- Dichroic : LotNumber
- Dichroic : Manufacturer
- Dichroic : Model
- Dichroic : SerialNumber
- Ellipse : ID
- Ellipse : RadiusX
- Ellipse : RadiusY
- Ellipse : Text
- Ellipse : X
- Ellipse : Y
- Experimenter : Email
- Experimenter : FirstName
- Experimenter : ID
- Experimenter : Institution
- Experimenter : LastName
- Experimenter : MiddleName
- Experimenter : UserName
- Filament : LotNumber
- Filament : Manufacturer
- Filament : Model
- Filament : Power
- Filament : SerialNumber
- Filter : FilterWheel
- Filter : ID
- Filter : LotNumber
- Filter : Manufacturer
- Filter : Model
- Filter : SerialNumber
- Filter : Type
- FilterSet : DichroicRef
- FilterSet : EmissionFilterRef
- FilterSet : ExcitationFilterRef
- FilterSet : ID
- FilterSet : LotNumber
- FilterSet : Manufacturer
- FilterSet : Model
- FilterSet : SerialNumber
- Image : AcquisitionDate
- Image : Description
- Image : ExperimenterRef
- Image : ID
- Image : InstrumentRef
- Image : Name
- Image : ROIRef
- ImagingEnvironment : AirPressure
- ImagingEnvironment : CO2Percent
- ImagingEnvironment : Humidity
- ImagingEnvironment : Temperature
- Instrument : ID
- Laser : LotNumber
- Laser : Manufacturer
- Laser : Model
- Laser : Power
- Laser : SerialNumber
- LightEmittingDiode : LotNumber
- LightEmittingDiode : Manufacturer
- LightEmittingDiode : Model
- LightEmittingDiode : Power
- LightEmittingDiode : SerialNumber
- Line : ID
- Line : Text
- Line : X1
- Line : X2
- Line : Y1
- Line : Y2
- Microscope : LotNumber
- Microscope : Manufacturer
- Microscope : Model
- Microscope : SerialNumber
- Microscope : Type
- Objective : CalibratedMagnification
- Objective : Correction
- Objective : ID
- Objective : Immersion
- Objective : Iris
- Objective : LensNA
- Objective : LotNumber
- Objective : Manufacturer
- Objective : Model
- Objective : NominalMagnification
- Objective : SerialNumber
- Objective : WorkingDistance
- ObjectiveSettings : CorrectionCollar
- ObjectiveSettings : ID
- ObjectiveSettings : Medium
- ObjectiveSettings : RefractiveIndex
- Pixels : BigEndian
- Pixels : DimensionOrder
- Pixels : ID
- Pixels : Interleaved
- Pixels : PhysicalSizeX
- Pixels : PhysicalSizeY
- Pixels : PhysicalSizeZ
- Pixels : SignificantBits
- Pixels : SizeC
- Pixels : SizeT
- Pixels : SizeX
- Pixels : SizeY
- Pixels : SizeZ
- Pixels : Type
- Plane : DeltaT
- Plane : ExposureTime
- Plane : PositionX
- Plane : PositionY
- Plane : PositionZ
- Plane : TheC
- Plane : TheT
- Plane : TheZ
- Polygon : ID
- Polygon : Points
- Polygon : Text
- Polyline : ID
- Polyline : Points
- Polyline : Text
- ROI : Description
- ROI : ID
- ROI : Name
- Rectangle : Height
- Rectangle : ID
- Rectangle : Text
- Rectangle : Width
- Rectangle : X
- Rectangle : Y
- TransmittanceRange : CutIn
- TransmittanceRange : CutInTolerance
- TransmittanceRange : CutOut
- TransmittanceRange : CutOutTolerance
- TransmittanceRange : Transmittance
Total supported: 158
Total unknown or missing: 318
