Some readers and writers have additional options which can be used to inform how Bio-Formats reads or writes files in that format.
| Format name | Option | Default | Description |
|---|---|---|---|
| Leica LAS AF LIF (Leica Image File Format) | leicalif.old_physical_size | false | Ensure physical pixel sizes are compatible with versions <= 5.3.2 |
| Nikon NIS-Elements ND2 | nativend2.chunkmap | true | Use chunkmap table to read image offsets |
| Zeiss CZI | zeissczi.attachments | true | Include attachment images |
| Zeiss CZI | zeissczi.autostitch | true | Automatically stitch tiled images |
Reader options can be used via the command line with showinf -option, in ImageJ via the configuration window, or via the API using the DynamicMetadataOptions class.
| Format name | Option | Default | Description |
|---|---|---|---|
| OME-TIFF | ometiff.companion | None | If set, OME-XML will be written to a companion file with a name determined by the option value |
Writer options can be used via the command line using bfconvert -option, or via the API using the DynamicMetadataOptions class.