Additional reader and writer options ==================================== Some readers and writers have additional options which can be used to inform how Bio-Formats reads or writes files in that format. Reader options -------------- .. list-table:: :header-rows: 1 * - Format name - Option - Default - Description * - :doc:`leica-lif` - ``leicalif.old_physical_size`` - false - Ensure physical pixel sizes are compatible with versions <= 5.3.2 * - :doc:`nikon-nis-elements-nd2` - ``nativend2.chunkmap`` - true - Use chunkmap table to read image offsets * - :doc:`zeiss-czi` - ``zeissczi.attachments`` - true - Include attachment images * - :doc:`zeiss-czi` - ``zeissczi.autostitch`` - true - Automatically stitch tiled images Usage ^^^^^ Reader options can be used via the command line with :option:`showinf -option`, in ImageJ via the :doc:`configuration window `, or via the API using the :javadoc:`DynamicMetadataOptions class `. Writer options -------------- .. list-table:: :header-rows: 1 * - Format name - Option - Default - Description * - :doc:`ome-tiff` - ``ometiff.companion`` - None - If set, OME-XML will be written to a companion file with a name determined by the option value Usage ^^^^^ Writer options can be used via the command line using :option:`bfconvert -option`, or via the API using the :javadoc:`DynamicMetadataOptions class `.