- a00 - Variable in class ome.model.roi.AffineTransform
-
- A00 - Static variable in class ome.model.roi.AffineTransform
-
- a01 - Variable in class ome.model.roi.AffineTransform
-
- A01 - Static variable in class ome.model.roi.AffineTransform
-
- a02 - Variable in class ome.model.roi.AffineTransform
-
- A02 - Static variable in class ome.model.roi.AffineTransform
-
- a10 - Variable in class ome.model.roi.AffineTransform
-
- A10 - Static variable in class ome.model.roi.AffineTransform
-
- a11 - Variable in class ome.model.roi.AffineTransform
-
- A11 - Static variable in class ome.model.roi.AffineTransform
-
- a12 - Variable in class ome.model.roi.AffineTransform
-
- A12 - Static variable in class ome.model.roi.AffineTransform
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.Arc
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.Detector
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.DetectorSettings
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.Dichroic
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.Filament
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.Filter
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSet
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.GenericExcitationSource
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.ImagingEnvironment
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.Instrument
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.Laser
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.LightEmittingDiode
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.LightPath
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.LightSettings
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.LightSource
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.Microscope
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.Objective
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.ObjectiveSettings
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.OTF
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.StageLabel
-
- acceptFilter(Filter) - Method in class ome.model.acquisition.TransmittanceRange
-
- acceptFilter(Filter) - Method in class ome.model.annotations.Annotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.AnnotationAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.BasicAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.BooleanAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.ChannelAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.CommentAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.DatasetAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.DetectorAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.DichroicAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.DoubleAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.ExperimenterAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.FileAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.FilesetAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.FilterAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.FolderAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.ImageAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.InstrumentAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.LightPathAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.LightSourceAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.ListAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.LongAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.MapAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.NamespaceAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.NodeAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.NumericAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.ObjectiveAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.OriginalFileAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.PlateAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.ProjectAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.ReagentAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.RoiAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.ScreenAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.SessionAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.ShapeAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.TagAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.TermAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.TextAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.TimestampAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.TypeAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.annotations.WellAnnotationLink
-
- acceptFilter(Filter) - Method in class ome.model.annotations.XmlAnnotation
-
- acceptFilter(Filter) - Method in class ome.model.containers.Dataset
-
- acceptFilter(Filter) - Method in class ome.model.containers.DatasetImageLink
-
- acceptFilter(Filter) - Method in class ome.model.containers.Folder
-
- acceptFilter(Filter) - Method in class ome.model.containers.FolderImageLink
-
- acceptFilter(Filter) - Method in class ome.model.containers.FolderRoiLink
-
- acceptFilter(Filter) - Method in class ome.model.containers.Project
-
- acceptFilter(Filter) - Method in class ome.model.containers.ProjectDatasetLink
-
- acceptFilter(Filter) - Method in class ome.model.core.Channel
-
- acceptFilter(Filter) - Method in class ome.model.core.Image
-
- acceptFilter(Filter) - Method in class ome.model.core.LogicalChannel
-
- acceptFilter(Filter) - Method in class ome.model.core.OriginalFile
-
- acceptFilter(Filter) - Method in class ome.model.core.Pixels
-
- acceptFilter(Filter) - Method in class ome.model.core.PixelsOriginalFileMap
-
- acceptFilter(Filter) - Method in class ome.model.core.PlaneInfo
-
- acceptFilter(Filter) - Method in class ome.model.display.ChannelBinding
-
- acceptFilter(Filter) - Method in class ome.model.display.CodomainMapContext
-
- acceptFilter(Filter) - Method in class ome.model.display.ContrastStretchingContext
-
- acceptFilter(Filter) - Method in class ome.model.display.PlaneSlicingContext
-
- acceptFilter(Filter) - Method in class ome.model.display.ProjectionDef
-
- acceptFilter(Filter) - Method in class ome.model.display.QuantumDef
-
- acceptFilter(Filter) - Method in class ome.model.display.RenderingDef
-
- acceptFilter(Filter) - Method in class ome.model.display.ReverseIntensityContext
-
- acceptFilter(Filter) - Method in class ome.model.display.Thumbnail
-
- acceptFilter(Filter) - Method in class ome.model.enums.AcquisitionMode
-
- acceptFilter(Filter) - Method in class ome.model.enums.AdminPrivilege
-
- acceptFilter(Filter) - Method in class ome.model.enums.ArcType
-
- acceptFilter(Filter) - Method in class ome.model.enums.Binning
-
- acceptFilter(Filter) - Method in class ome.model.enums.ChecksumAlgorithm
-
- acceptFilter(Filter) - Method in class ome.model.enums.ContrastMethod
-
- acceptFilter(Filter) - Method in class ome.model.enums.Correction
-
- acceptFilter(Filter) - Method in class ome.model.enums.DetectorType
-
- acceptFilter(Filter) - Method in class ome.model.enums.DimensionOrder
-
- acceptFilter(Filter) - Method in class ome.model.enums.EventType
-
- acceptFilter(Filter) - Method in class ome.model.enums.ExperimentType
-
- acceptFilter(Filter) - Method in class ome.model.enums.Family
-
- acceptFilter(Filter) - Method in class ome.model.enums.FilamentType
-
- acceptFilter(Filter) - Method in class ome.model.enums.FilterType
-
- acceptFilter(Filter) - Method in class ome.model.enums.Format
-
- acceptFilter(Filter) - Method in class ome.model.enums.Illumination
-
- acceptFilter(Filter) - Method in class ome.model.enums.Immersion
-
- acceptFilter(Filter) - Method in class ome.model.enums.LaserMedium
-
- acceptFilter(Filter) - Method in class ome.model.enums.LaserType
-
- acceptFilter(Filter) - Method in class ome.model.enums.Medium
-
- acceptFilter(Filter) - Method in class ome.model.enums.MicrobeamManipulationType
-
- acceptFilter(Filter) - Method in class ome.model.enums.MicroscopeType
-
- acceptFilter(Filter) - Method in class ome.model.enums.PhotometricInterpretation
-
- acceptFilter(Filter) - Method in class ome.model.enums.PixelsType
-
- acceptFilter(Filter) - Method in class ome.model.enums.ProjectionAxis
-
- acceptFilter(Filter) - Method in class ome.model.enums.ProjectionType
-
- acceptFilter(Filter) - Method in class ome.model.enums.Pulse
-
- acceptFilter(Filter) - Method in class ome.model.enums.RenderingModel
-
- acceptFilter(Filter) - Method in class ome.model.experiment.Experiment
-
- acceptFilter(Filter) - Method in class ome.model.experiment.MicrobeamManipulation
-
- acceptFilter(Filter) - Method in class ome.model.fs.Fileset
-
- acceptFilter(Filter) - Method in class ome.model.fs.FilesetEntry
-
- acceptFilter(Filter) - Method in class ome.model.fs.FilesetJobLink
-
- acceptFilter(Filter) - Method in class ome.model.internal.Details
-
- acceptFilter(Filter) - Method in class ome.model.internal.Link
-
- acceptFilter(Filter) - Method in class ome.model.jobs.ImportJob
-
Deprecated.
- acceptFilter(Filter) - Method in class ome.model.jobs.IndexingJob
-
- acceptFilter(Filter) - Method in class ome.model.jobs.IntegrityCheckJob
-
- acceptFilter(Filter) - Method in class ome.model.jobs.Job
-
- acceptFilter(Filter) - Method in class ome.model.jobs.JobOriginalFileLink
-
- acceptFilter(Filter) - Method in class ome.model.jobs.JobStatus
-
- acceptFilter(Filter) - Method in class ome.model.jobs.MetadataImportJob
-
- acceptFilter(Filter) - Method in class ome.model.jobs.ParseJob
-
- acceptFilter(Filter) - Method in class ome.model.jobs.PixelDataJob
-
- acceptFilter(Filter) - Method in class ome.model.jobs.ScriptJob
-
- acceptFilter(Filter) - Method in class ome.model.jobs.ThumbnailGenerationJob
-
- acceptFilter(Filter) - Method in class ome.model.jobs.UploadJob
-
- acceptFilter(Filter) - Method in class ome.model.meta.DBPatch
-
- acceptFilter(Filter) - Method in class ome.model.meta.Event
-
- acceptFilter(Filter) - Method in class ome.model.meta.EventLog
-
- acceptFilter(Filter) - Method in class ome.model.meta.Experimenter
-
- acceptFilter(Filter) - Method in class ome.model.meta.ExperimenterGroup
-
- acceptFilter(Filter) - Method in class ome.model.meta.ExternalInfo
-
- acceptFilter(Filter) - Method in class ome.model.meta.GroupExperimenterMap
-
- acceptFilter(Filter) - Method in class ome.model.meta.Namespace
-
- acceptFilter(Filter) - Method in class ome.model.meta.Node
-
- acceptFilter(Filter) - Method in class ome.model.meta.Session
-
- acceptFilter(Filter) - Method in class ome.model.meta.Share
-
- acceptFilter(Filter) - Method in class ome.model.meta.ShareMember
-
- acceptFilter(Filter) - Method in class ome.model.roi.AffineTransform
-
- acceptFilter(Filter) - Method in class ome.model.roi.Ellipse
-
- acceptFilter(Filter) - Method in class ome.model.roi.Label
-
- acceptFilter(Filter) - Method in class ome.model.roi.Line
-
- acceptFilter(Filter) - Method in class ome.model.roi.Mask
-
- acceptFilter(Filter) - Method in class ome.model.roi.Path
-
Deprecated.
- acceptFilter(Filter) - Method in class ome.model.roi.Point
-
- acceptFilter(Filter) - Method in class ome.model.roi.Polygon
-
- acceptFilter(Filter) - Method in class ome.model.roi.Polyline
-
- acceptFilter(Filter) - Method in class ome.model.roi.Rectangle
-
- acceptFilter(Filter) - Method in class ome.model.roi.Roi
-
- acceptFilter(Filter) - Method in class ome.model.roi.Shape
-
- acceptFilter(Filter) - Method in class ome.model.screen.Plate
-
- acceptFilter(Filter) - Method in class ome.model.screen.PlateAcquisition
-
- acceptFilter(Filter) - Method in class ome.model.screen.Reagent
-
- acceptFilter(Filter) - Method in class ome.model.screen.Screen
-
- acceptFilter(Filter) - Method in class ome.model.screen.ScreenPlateLink
-
- acceptFilter(Filter) - Method in class ome.model.screen.Well
-
- acceptFilter(Filter) - Method in class ome.model.screen.WellReagentLink
-
- acceptFilter(Filter) - Method in class ome.model.screen.WellSample
-
- acceptFilter(Filter) - Method in class ome.model.stats.StatsInfo
-
- acceptFilter(Filter) - Method in class ome.model.units.ElectricPotential
-
- acceptFilter(Filter) - Method in class ome.model.units.Frequency
-
- acceptFilter(Filter) - Method in class ome.model.units.Length
-
- acceptFilter(Filter) - Method in class ome.model.units.Power
-
- acceptFilter(Filter) - Method in class ome.model.units.Pressure
-
- acceptFilter(Filter) - Method in class ome.model.units.Temperature
-
- acceptFilter(Filter) - Method in class ome.model.units.Time
-
- acceptFilter(Filter) - Method in interface ome.util.Filterable
-
- acceptFilter(Filter) - Method in class ome.util.PermDetails
-
- ACLCreateViolation - Exception in ome.conditions.acl
-
User does not have permissions to perform given action.
- ACLCreateViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLCreateViolation
-
- ACLDeleteViolation - Exception in ome.conditions.acl
-
User does not have permissions to perform given action.
- ACLDeleteViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLDeleteViolation
-
- ACLLoadViolation - Exception in ome.conditions.acl
-
User does not have permissions to perform given action.
- ACLLoadViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLLoadViolation
-
- ACLUpdateViolation - Exception in ome.conditions.acl
-
User does not have permissions to perform given action.
- ACLUpdateViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLUpdateViolation
-
- ACLViolation - Exception in ome.conditions.acl
-
User has attempted an action which is not permitted by the
Permissions
of a given instance.
- ACLViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLViolation
-
- acquisitionData - Variable in class ome.parameters.Options
-
- acquisitionDate - Variable in class ome.model.core.Image
-
- ACQUISITIONDATE - Static variable in class ome.model.core.Image
-
- AcquisitionMode - Class in ome.model.enums
-
- AcquisitionMode() - Constructor for class ome.model.enums.AcquisitionMode
-
- AcquisitionMode(Long) - Constructor for class ome.model.enums.AcquisitionMode
-
- AcquisitionMode(Long, boolean) - Constructor for class ome.model.enums.AcquisitionMode
-
Main constructor.
- AcquisitionMode(String) - Constructor for class ome.model.enums.AcquisitionMode
-
- AcquisitionMode.Details - Class in ome.model.enums
-
- action - Variable in class ome.model.meta.EventLog
-
- ACTION - Static variable in class ome.model.meta.EventLog
-
- active - Variable in class ome.model.display.ChannelBinding
-
- ACTIVE - Static variable in class ome.model.display.ChannelBinding
-
- active - Variable in class ome.model.display.ProjectionDef
-
- ACTIVE - Static variable in class ome.model.display.ProjectionDef
-
- active - Variable in class ome.model.meta.Share
-
- ACTIVE - Static variable in class ome.model.meta.Share
-
- activeSession(String) - Method in class ome.util.actions.PostgresSqlAction
-
- activeSession(String) - Method in interface ome.util.SqlAction
-
Returns whether the given string is the UUID of a session that is
currently active.
- Add(Conversion...) - Static method in class ome.model.units.Conversion
-
- Add(Conversion[]) - Constructor for class ome.model.units.Conversion.Add
-
- add(QueryParameter) - Method in class ome.parameters.Parameters
-
- add(String) - Method in class ome.parameters.Period
-
- addAlgorithm(String) - Method in class ome.parameters.Parameters
-
- addAll(Parameters) - Method in class ome.parameters.Parameters
-
adds all the information from the passed in Parameters instance to this
instance.
- addAll(QueryParameter[]) - Method in class ome.parameters.Parameters
-
adds all the information from the passed in Parameters instance to this
instance.
- addAnnotationAnnotationLink(AnnotationAnnotationLink) - Method in class ome.model.annotations.Annotation
-
use instead of setAnnotationLinks .
- addAnnotationAnnotationLink(AnnotationAnnotationLink, boolean) - Method in class ome.model.annotations.Annotation
-
Adds a ome.model.annotations.AnnotationAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addAnnotationAnnotationLink will be called on the addition if it is loaded
- addAnnotationAnnotationLinkSet(Collection<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation
-
use like addAnnotationAnnotationLink.
- addBoolean(String, Boolean) - Method in class ome.parameters.Parameters
-
- addChannel(Channel) - Method in class ome.model.core.LogicalChannel
-
use instead of setChannels .
- addChannel(Channel) - Method in class ome.model.core.Pixels
-
use instead of setChannels .
- addChannelAnnotationLink(ChannelAnnotationLink) - Method in class ome.model.core.Channel
-
use instead of setAnnotationLinks .
- addChannelAnnotationLink(ChannelAnnotationLink, boolean) - Method in class ome.model.core.Channel
-
Adds a ome.model.annotations.ChannelAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addChannelAnnotationLink will be called on the addition if it is loaded
- addChannelAnnotationLinkSet(Collection<ChannelAnnotationLink>) - Method in class ome.model.core.Channel
-
use like addChannelAnnotationLink.
- addChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef
-
use instead of setWaveRendering .
- addChannelBindingSet(Collection<ChannelBinding>) - Method in class ome.model.display.RenderingDef
-
use like addChannelBinding.
- addChannelSet(Collection<Channel>) - Method in class ome.model.core.LogicalChannel
-
use like addChannel.
- addChannelSet(Collection<Channel>) - Method in class ome.model.core.Pixels
-
use like addChannel.
- addChildFolders(Folder) - Method in class ome.model.containers.Folder
-
use instead of setChildFolders .
- addChildFoldersSet(Collection<Folder>) - Method in class ome.model.containers.Folder
-
use like addFolder.
- addClass(Class) - Method in class ome.parameters.Parameters
-
- addClass(String, Class) - Method in class ome.parameters.Parameters
-
- addCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding
-
use instead of setSpatialDomainEnhancement .
- addCodomainMapContextSet(Collection<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding
-
use like addCodomainMapContext.
- addDatasetAnnotationLink(DatasetAnnotationLink) - Method in class ome.model.containers.Dataset
-
use instead of setAnnotationLinks .
- addDatasetAnnotationLink(DatasetAnnotationLink, boolean) - Method in class ome.model.containers.Dataset
-
Adds a ome.model.annotations.DatasetAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addDatasetAnnotationLink will be called on the addition if it is loaded
- addDatasetAnnotationLinkSet(Collection<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset
-
use like addDatasetAnnotationLink.
- addDatasetImageLink(DatasetImageLink) - Method in class ome.model.containers.Dataset
-
use instead of setImageLinks .
- addDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.containers.Dataset
-
Adds a ome.model.containers.DatasetImageLink to imageLinks, allowing for recursion -- whether
or not addDatasetImageLink will be called on the addition if it is loaded
- addDatasetImageLink(DatasetImageLink) - Method in class ome.model.core.Image
-
use instead of setDatasetLinks .
- addDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.core.Image
-
Adds a ome.model.containers.DatasetImageLink to datasetLinks, allowing for recursion -- whether
or not addDatasetImageLink will be called on the addition if it is loaded
- addDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.containers.Dataset
-
use like addDatasetImageLink.
- addDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.core.Image
-
use like addDatasetImageLink.
- addDetector(Detector) - Method in class ome.model.acquisition.Instrument
-
use instead of setDetector .
- addDetectorAnnotationLink(DetectorAnnotationLink) - Method in class ome.model.acquisition.Detector
-
use instead of setAnnotationLinks .
- addDetectorAnnotationLink(DetectorAnnotationLink, boolean) - Method in class ome.model.acquisition.Detector
-
Adds a ome.model.annotations.DetectorAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addDetectorAnnotationLink will be called on the addition if it is loaded
- addDetectorAnnotationLinkSet(Collection<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector
-
use like addDetectorAnnotationLink.
- addDetectorSet(Collection<Detector>) - Method in class ome.model.acquisition.Instrument
-
use like addDetector.
- addDichroic(Dichroic) - Method in class ome.model.acquisition.Instrument
-
use instead of setDichroic .
- addDichroicAnnotationLink(DichroicAnnotationLink) - Method in class ome.model.acquisition.Dichroic
-
use instead of setAnnotationLinks .
- addDichroicAnnotationLink(DichroicAnnotationLink, boolean) - Method in class ome.model.acquisition.Dichroic
-
Adds a ome.model.annotations.DichroicAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addDichroicAnnotationLink will be called on the addition if it is loaded
- addDichroicAnnotationLinkSet(Collection<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic
-
use like addDichroicAnnotationLink.
- addDichroicSet(Collection<Dichroic>) - Method in class ome.model.acquisition.Instrument
-
use like addDichroic.
- addEvent(Event) - Method in class ome.model.meta.Session
-
use instead of setEvents .
- addEventLog(EventLog) - Method in class ome.model.meta.Event
-
use instead of setLogs .
- addEventLogSet(Collection<EventLog>) - Method in class ome.model.meta.Event
-
use like addEventLog.
- addEventSet(Collection<Event>) - Method in class ome.model.meta.Session
-
use like addEvent.
- addExperimenterAnnotationLink(ExperimenterAnnotationLink) - Method in class ome.model.meta.Experimenter
-
use instead of setAnnotationLinks .
- addExperimenterAnnotationLink(ExperimenterAnnotationLink, boolean) - Method in class ome.model.meta.Experimenter
-
Adds a ome.model.annotations.ExperimenterAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addExperimenterAnnotationLink will be called on the addition if it is loaded
- addExperimenterAnnotationLinkSet(Collection<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter
-
use like addExperimenterAnnotationLink.
- addExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink) - Method in class ome.model.meta.ExperimenterGroup
-
use instead of setAnnotationLinks .
- addExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink, boolean) - Method in class ome.model.meta.ExperimenterGroup
-
Adds a ome.model.annotations.ExperimenterGroupAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addExperimenterGroupAnnotationLink will be called on the addition if it is loaded
- addExperimenterGroupAnnotationLinkSet(Collection<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup
-
use like addExperimenterGroupAnnotationLink.
- addExtendedRestrictions(Set<String>) - Method in class ome.model.internal.Permissions
-
- addFilesetAnnotationLink(FilesetAnnotationLink) - Method in class ome.model.fs.Fileset
-
use instead of setAnnotationLinks .
- addFilesetAnnotationLink(FilesetAnnotationLink, boolean) - Method in class ome.model.fs.Fileset
-
Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addFilesetAnnotationLink will be called on the addition if it is loaded
- addFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset
-
use like addFilesetAnnotationLink.
- addFilesetEntry(FilesetEntry) - Method in class ome.model.core.OriginalFile
-
use instead of setFilesetEntries .
- addFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset
-
use instead of setUsedFiles .
- addFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.core.OriginalFile
-
use like addFilesetEntry.
- addFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.fs.Fileset
-
use like addFilesetEntry.
- addFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset
-
use instead of setJobLinks .
- addFilesetJobLink(FilesetJobLink, boolean) - Method in class ome.model.fs.Fileset
-
Adds a ome.model.fs.FilesetJobLink to jobLinks, allowing for recursion -- whether
or not addFilesetJobLink will be called on the addition if it is loaded
- addFilesetJobLinkSet(Collection<FilesetJobLink>) - Method in class ome.model.fs.Fileset
-
use like addFilesetJobLink.
- addFilter(Filter) - Method in class ome.model.acquisition.Instrument
-
use instead of setFilter .
- addFilterAnnotationLink(FilterAnnotationLink) - Method in class ome.model.acquisition.Filter
-
use instead of setAnnotationLinks .
- addFilterAnnotationLink(FilterAnnotationLink, boolean) - Method in class ome.model.acquisition.Filter
-
Adds a ome.model.annotations.FilterAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addFilterAnnotationLink will be called on the addition if it is loaded
- addFilterAnnotationLinkSet(Collection<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter
-
use like addFilterAnnotationLink.
- addFiltered(String) - Method in class ome.model.internal.Details
-
consider the collection named by collectionName
to be a
"filtered" representation of the DB.
- addFiltered(Collection<String>) - Method in class ome.model.internal.Details
-
consider all the collections named by the elements of collection to be a
"filtered" representation of the DB.
- addFilterSet(Collection<Filter>) - Method in class ome.model.acquisition.Instrument
-
use like addFilter.
- addFilterSet(FilterSet) - Method in class ome.model.acquisition.Instrument
-
use instead of setFilterSet .
- addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.Filter
-
use instead of setEmissionFilterLink .
- addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.Filter
-
Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether
or not addFilterSetEmissionFilterLink will be called on the addition if it is loaded
- addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.FilterSet
-
use instead of setEmissionFilterLink .
- addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet
-
Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether
or not addFilterSetEmissionFilterLink will be called on the addition if it is loaded
- addFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter
-
use like addFilterSetEmissionFilterLink.
- addFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet
-
use like addFilterSetEmissionFilterLink.
- addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.Filter
-
use instead of setExcitationFilterLink .
- addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.Filter
-
Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether
or not addFilterSetExcitationFilterLink will be called on the addition if it is loaded
- addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.FilterSet
-
use instead of setExcitationFilterLink .
- addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet
-
Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether
or not addFilterSetExcitationFilterLink will be called on the addition if it is loaded
- addFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter
-
use like addFilterSetExcitationFilterLink.
- addFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet
-
use like addFilterSetExcitationFilterLink.
- addFilterSetSet(Collection<FilterSet>) - Method in class ome.model.acquisition.Instrument
-
use like addFilterSet.
- addFolderAnnotationLink(FolderAnnotationLink) - Method in class ome.model.containers.Folder
-
use instead of setAnnotationLinks .
- addFolderAnnotationLink(FolderAnnotationLink, boolean) - Method in class ome.model.containers.Folder
-
Adds a ome.model.annotations.FolderAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addFolderAnnotationLink will be called on the addition if it is loaded
- addFolderAnnotationLinkSet(Collection<FolderAnnotationLink>) - Method in class ome.model.containers.Folder
-
use like addFolderAnnotationLink.
- addFolderImageLink(FolderImageLink) - Method in class ome.model.containers.Folder
-
use instead of setImageLinks .
- addFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.containers.Folder
-
Adds a ome.model.containers.FolderImageLink to imageLinks, allowing for recursion -- whether
or not addFolderImageLink will be called on the addition if it is loaded
- addFolderImageLink(FolderImageLink) - Method in class ome.model.core.Image
-
use instead of setFolderLinks .
- addFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.core.Image
-
Adds a ome.model.containers.FolderImageLink to folderLinks, allowing for recursion -- whether
or not addFolderImageLink will be called on the addition if it is loaded
- addFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.containers.Folder
-
use like addFolderImageLink.
- addFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.core.Image
-
use like addFolderImageLink.
- addFolderRoiLink(FolderRoiLink) - Method in class ome.model.containers.Folder
-
use instead of setRoiLinks .
- addFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.containers.Folder
-
Adds a ome.model.containers.FolderRoiLink to roiLinks, allowing for recursion -- whether
or not addFolderRoiLink will be called on the addition if it is loaded
- addFolderRoiLink(FolderRoiLink) - Method in class ome.model.roi.Roi
-
use instead of setFolderLinks .
- addFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.roi.Roi
-
Adds a ome.model.containers.FolderRoiLink to folderLinks, allowing for recursion -- whether
or not addFolderRoiLink will be called on the addition if it is loaded
- addFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.containers.Folder
-
use like addFolderRoiLink.
- addFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.roi.Roi
-
use like addFolderRoiLink.
- addGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter
-
use instead of setGroupExperimenterMap .
- addGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.Experimenter
-
Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap, allowing for recursion -- whether
or not addGroupExperimenterMap will be called on the addition if it is loaded
- addGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.ExperimenterGroup
-
use instead of setGroupExperimenterMap .
- addGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.ExperimenterGroup
-
Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap, allowing for recursion -- whether
or not addGroupExperimenterMap will be called on the addition if it is loaded
- addGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter
-
use like addGroupExperimenterMap.
- addGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup
-
use like addGroupExperimenterMap.
- addId(Long) - Method in class ome.parameters.Parameters
-
- addIds(Collection) - Method in class ome.parameters.Parameters
-
- addImage(Image) - Method in class ome.model.fs.Fileset
-
use instead of setImages .
- addImageAnnotationLink(ImageAnnotationLink) - Method in class ome.model.core.Image
-
use instead of setAnnotationLinks .
- addImageAnnotationLink(ImageAnnotationLink, boolean) - Method in class ome.model.core.Image
-
Adds a ome.model.annotations.ImageAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addImageAnnotationLink will be called on the addition if it is loaded
- addImageAnnotationLinkSet(Collection<ImageAnnotationLink>) - Method in class ome.model.core.Image
-
use like addImageAnnotationLink.
- addImageSet(Collection<Image>) - Method in class ome.model.fs.Fileset
-
use like addImage.
- addInstrumentAnnotationLink(InstrumentAnnotationLink) - Method in class ome.model.acquisition.Instrument
-
use instead of setAnnotationLinks .
- addInstrumentAnnotationLink(InstrumentAnnotationLink, boolean) - Method in class ome.model.acquisition.Instrument
-
Adds a ome.model.annotations.InstrumentAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addInstrumentAnnotationLink will be called on the addition if it is loaded
- addInstrumentAnnotationLinkSet(Collection<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument
-
use like addInstrumentAnnotationLink.
- addInteger(String, Integer) - Method in class ome.parameters.Parameters
-
- addJobOriginalFileLink(JobOriginalFileLink) - Method in class ome.model.jobs.Job
-
use instead of setOriginalFileLinks .
- addJobOriginalFileLink(JobOriginalFileLink, boolean) - Method in class ome.model.jobs.Job
-
Adds a ome.model.jobs.JobOriginalFileLink to originalFileLinks, allowing for recursion -- whether
or not addJobOriginalFileLink will be called on the addition if it is loaded
- addJobOriginalFileLinkSet(Collection<JobOriginalFileLink>) - Method in class ome.model.jobs.Job
-
use like addJobOriginalFileLink.
- addLightPathAnnotationLink(LightPathAnnotationLink) - Method in class ome.model.acquisition.LightPath
-
use instead of setAnnotationLinks .
- addLightPathAnnotationLink(LightPathAnnotationLink, boolean) - Method in class ome.model.acquisition.LightPath
-
Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addLightPathAnnotationLink will be called on the addition if it is loaded
- addLightPathAnnotationLinkSet(Collection<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath
-
use like addLightPathAnnotationLink.
- addLightPathEmissionFilterLink(LightPathEmissionFilterLink) - Method in class ome.model.acquisition.LightPath
-
use instead of setEmissionFilterLink .
- addLightPathEmissionFilterLink(LightPathEmissionFilterLink, boolean) - Method in class ome.model.acquisition.LightPath
-
Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether
or not addLightPathEmissionFilterLink will be called on the addition if it is loaded
- addLightPathEmissionFilterLinkSet(Collection<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath
-
use like addLightPathEmissionFilterLink.
- addLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath
-
use instead of setExcitationFilterLink .
- addLightPathExcitationFilterLink(LightPathExcitationFilterLink, boolean) - Method in class ome.model.acquisition.LightPath
-
Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether
or not addLightPathExcitationFilterLink will be called on the addition if it is loaded
- addLightPathExcitationFilterLinkSet(Collection<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath
-
use like addLightPathExcitationFilterLink.
- addLightSettings(LightSettings) - Method in class ome.model.experiment.MicrobeamManipulation
-
use instead of setLightSourceSettings .
- addLightSettingsSet(Collection<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation
-
use like addLightSettings.
- addLightSource(LightSource) - Method in class ome.model.acquisition.Instrument
-
use instead of setLightSource .
- addLightSourceAnnotationLink(LightSourceAnnotationLink) - Method in class ome.model.acquisition.LightSource
-
use instead of setAnnotationLinks .
- addLightSourceAnnotationLink(LightSourceAnnotationLink, boolean) - Method in class ome.model.acquisition.LightSource
-
Adds a ome.model.annotations.LightSourceAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addLightSourceAnnotationLink will be called on the addition if it is loaded
- addLightSourceAnnotationLinkSet(Collection<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource
-
use like addLightSourceAnnotationLink.
- addLightSourceSet(Collection<LightSource>) - Method in class ome.model.acquisition.Instrument
-
use like addLightSource.
- addList(String, List) - Method in class ome.parameters.Parameters
-
- addLong(String, Long) - Method in class ome.parameters.Parameters
-
- addMap(String, Map) - Method in class ome.parameters.Parameters
-
- addMessageWithinDbPatchEnd(String, int, String) - Method in interface ome.util.SqlAction
-
Add a unique message to the DB patch table within the current patch.
- addMessageWithinDbPatchEnd(String, int, String) - Method in class ome.util.SqlAction.Impl
-
- addMessageWithinDbPatchStart(String, int, String) - Method in interface ome.util.SqlAction
-
Add a unique message to the DB patch table within the current patch.
- addMessageWithinDbPatchStart(String, int, String) - Method in class ome.util.SqlAction.Impl
-
- addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.experiment.Experiment
-
use instead of setMicrobeamManipulation .
- addMicrobeamManipulationSet(Collection<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment
-
use like addMicrobeamManipulation.
- addMimetypes(Collection<String>, MapSqlParameterSource) - Method in class ome.util.SqlAction.Impl
-
Returns the "and_mimetype" clause which must be appended to a given
query.
- addNamespaceAnnotationLink(NamespaceAnnotationLink) - Method in class ome.model.meta.Namespace
-
use instead of setAnnotationLinks .
- addNamespaceAnnotationLink(NamespaceAnnotationLink, boolean) - Method in class ome.model.meta.Namespace
-
Adds a ome.model.annotations.NamespaceAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addNamespaceAnnotationLink will be called on the addition if it is loaded
- addNamespaceAnnotationLinkSet(Collection<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace
-
use like addNamespaceAnnotationLink.
- addNodeAnnotationLink(NodeAnnotationLink) - Method in class ome.model.meta.Node
-
use instead of setAnnotationLinks .
- addNodeAnnotationLink(NodeAnnotationLink, boolean) - Method in class ome.model.meta.Node
-
Adds a ome.model.annotations.NodeAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addNodeAnnotationLink will be called on the addition if it is loaded
- addNodeAnnotationLinkSet(Collection<NodeAnnotationLink>) - Method in class ome.model.meta.Node
-
use like addNodeAnnotationLink.
- addObjective(Objective) - Method in class ome.model.acquisition.Instrument
-
use instead of setObjective .
- addObjectiveAnnotationLink(ObjectiveAnnotationLink) - Method in class ome.model.acquisition.Objective
-
use instead of setAnnotationLinks .
- addObjectiveAnnotationLink(ObjectiveAnnotationLink, boolean) - Method in class ome.model.acquisition.Objective
-
Adds a ome.model.annotations.ObjectiveAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addObjectiveAnnotationLink will be called on the addition if it is loaded
- addObjectiveAnnotationLinkSet(Collection<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective
-
use like addObjectiveAnnotationLink.
- addObjectiveSet(Collection<Objective>) - Method in class ome.model.acquisition.Instrument
-
use like addObjective.
- addOriginalFileAnnotationLink(OriginalFileAnnotationLink) - Method in class ome.model.core.OriginalFile
-
use instead of setAnnotationLinks .
- addOriginalFileAnnotationLink(OriginalFileAnnotationLink, boolean) - Method in class ome.model.core.OriginalFile
-
Adds a ome.model.annotations.OriginalFileAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addOriginalFileAnnotationLink will be called on the addition if it is loaded
- addOriginalFileAnnotationLinkSet(Collection<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile
-
use like addOriginalFileAnnotationLink.
- addOTF(OTF) - Method in class ome.model.acquisition.Instrument
-
use instead of setOtf .
- addOTFSet(Collection<OTF>) - Method in class ome.model.acquisition.Instrument
-
use like addOTF.
- addPixels(Pixels) - Method in class ome.model.core.Image
-
use instead of setPixels .
- addPixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.OriginalFile
-
use instead of setPixelsFileMaps .
- addPixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.OriginalFile
-
Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps, allowing for recursion -- whether
or not addPixelsOriginalFileMap will be called on the addition if it is loaded
- addPixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.Pixels
-
use instead of setPixelsFileMaps .
- addPixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.Pixels
-
Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps, allowing for recursion -- whether
or not addPixelsOriginalFileMap will be called on the addition if it is loaded
- addPixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile
-
use like addPixelsOriginalFileMap.
- addPixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels
-
use like addPixelsOriginalFileMap.
- addPixelsSet(Collection<Pixels>) - Method in class ome.model.core.Image
-
use like addPixels.
- addPlaneInfo(PlaneInfo) - Method in class ome.model.core.Pixels
-
use instead of setPlaneInfo .
- addPlaneInfoAnnotationLink(PlaneInfoAnnotationLink) - Method in class ome.model.core.PlaneInfo
-
use instead of setAnnotationLinks .
- addPlaneInfoAnnotationLink(PlaneInfoAnnotationLink, boolean) - Method in class ome.model.core.PlaneInfo
-
Adds a ome.model.annotations.PlaneInfoAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addPlaneInfoAnnotationLink will be called on the addition if it is loaded
- addPlaneInfoAnnotationLinkSet(Collection<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo
-
use like addPlaneInfoAnnotationLink.
- addPlaneInfoSet(Collection<PlaneInfo>) - Method in class ome.model.core.Pixels
-
use like addPlaneInfo.
- addPlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.Plate
-
use instead of setPlateAcquisitions .
- addPlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink) - Method in class ome.model.screen.PlateAcquisition
-
use instead of setAnnotationLinks .
- addPlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink, boolean) - Method in class ome.model.screen.PlateAcquisition
-
Adds a ome.model.annotations.PlateAcquisitionAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addPlateAcquisitionAnnotationLink will be called on the addition if it is loaded
- addPlateAcquisitionAnnotationLinkSet(Collection<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition
-
use like addPlateAcquisitionAnnotationLink.
- addPlateAcquisitionSet(Collection<PlateAcquisition>) - Method in class ome.model.screen.Plate
-
use like addPlateAcquisition.
- addPlateAnnotationLink(PlateAnnotationLink) - Method in class ome.model.screen.Plate
-
use instead of setAnnotationLinks .
- addPlateAnnotationLink(PlateAnnotationLink, boolean) - Method in class ome.model.screen.Plate
-
Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addPlateAnnotationLink will be called on the addition if it is loaded
- addPlateAnnotationLinkSet(Collection<PlateAnnotationLink>) - Method in class ome.model.screen.Plate
-
use like addPlateAnnotationLink.
- addProjectAnnotationLink(ProjectAnnotationLink) - Method in class ome.model.containers.Project
-
use instead of setAnnotationLinks .
- addProjectAnnotationLink(ProjectAnnotationLink, boolean) - Method in class ome.model.containers.Project
-
Adds a ome.model.annotations.ProjectAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addProjectAnnotationLink will be called on the addition if it is loaded
- addProjectAnnotationLinkSet(Collection<ProjectAnnotationLink>) - Method in class ome.model.containers.Project
-
use like addProjectAnnotationLink.
- addProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Dataset
-
use instead of setProjectLinks .
- addProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Dataset
-
Adds a ome.model.containers.ProjectDatasetLink to projectLinks, allowing for recursion -- whether
or not addProjectDatasetLink will be called on the addition if it is loaded
- addProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Project
-
use instead of setDatasetLinks .
- addProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Project
-
Adds a ome.model.containers.ProjectDatasetLink to datasetLinks, allowing for recursion -- whether
or not addProjectDatasetLink will be called on the addition if it is loaded
- addProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset
-
use like addProjectDatasetLink.
- addProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Project
-
use like addProjectDatasetLink.
- addProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef
-
use instead of setProjections .
- addProjectionDefSet(Collection<ProjectionDef>) - Method in class ome.model.display.RenderingDef
-
use like addProjectionDef.
- addReagent(Reagent) - Method in class ome.model.screen.Screen
-
use instead of setReagents .
- addReagentAnnotationLink(ReagentAnnotationLink) - Method in class ome.model.screen.Reagent
-
use instead of setAnnotationLinks .
- addReagentAnnotationLink(ReagentAnnotationLink, boolean) - Method in class ome.model.screen.Reagent
-
Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addReagentAnnotationLink will be called on the addition if it is loaded
- addReagentAnnotationLinkSet(Collection<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent
-
use like addReagentAnnotationLink.
- addReagentSet(Collection<Reagent>) - Method in class ome.model.screen.Screen
-
use like addReagent.
- addRenderingDef(RenderingDef) - Method in class ome.model.core.Pixels
-
use instead of setSettings .
- addRenderingDefSet(Collection<RenderingDef>) - Method in class ome.model.core.Pixels
-
use like addRenderingDef.
- addRoi(Roi) - Method in class ome.model.core.Image
-
use instead of setRois .
- addRoiAnnotationLink(RoiAnnotationLink) - Method in class ome.model.roi.Roi
-
use instead of setAnnotationLinks .
- addRoiAnnotationLink(RoiAnnotationLink, boolean) - Method in class ome.model.roi.Roi
-
Adds a ome.model.annotations.RoiAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addRoiAnnotationLink will be called on the addition if it is loaded
- addRoiAnnotationLinkSet(Collection<RoiAnnotationLink>) - Method in class ome.model.roi.Roi
-
use like addRoiAnnotationLink.
- addRoiSet(Collection<Roi>) - Method in class ome.model.core.Image
-
use like addRoi.
- addScreenAnnotationLink(ScreenAnnotationLink) - Method in class ome.model.screen.Screen
-
use instead of setAnnotationLinks .
- addScreenAnnotationLink(ScreenAnnotationLink, boolean) - Method in class ome.model.screen.Screen
-
Adds a ome.model.annotations.ScreenAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addScreenAnnotationLink will be called on the addition if it is loaded
- addScreenAnnotationLinkSet(Collection<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen
-
use like addScreenAnnotationLink.
- addScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Plate
-
use instead of setScreenLinks .
- addScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Plate
-
Adds a ome.model.screen.ScreenPlateLink to screenLinks, allowing for recursion -- whether
or not addScreenPlateLink will be called on the addition if it is loaded
- addScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Screen
-
use instead of setPlateLinks .
- addScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Screen
-
Adds a ome.model.screen.ScreenPlateLink to plateLinks, allowing for recursion -- whether
or not addScreenPlateLink will be called on the addition if it is loaded
- addScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Plate
-
use like addScreenPlateLink.
- addScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Screen
-
use like addScreenPlateLink.
- addSeen(Object) - Method in class ome.util.ContextFilter
-
- addSession(Session) - Method in class ome.model.meta.Node
-
use instead of setSessions .
- addSessionAnnotationLink(SessionAnnotationLink) - Method in class ome.model.meta.Session
-
use instead of setAnnotationLinks .
- addSessionAnnotationLink(SessionAnnotationLink, boolean) - Method in class ome.model.meta.Session
-
Adds a ome.model.annotations.SessionAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addSessionAnnotationLink will be called on the addition if it is loaded
- addSessionAnnotationLinkSet(Collection<SessionAnnotationLink>) - Method in class ome.model.meta.Session
-
use like addSessionAnnotationLink.
- addSessionSet(Collection<Session>) - Method in class ome.model.meta.Node
-
use like addSession.
- addSet(String, Set) - Method in class ome.parameters.Parameters
-
- addShape(Shape) - Method in class ome.model.roi.Roi
-
use instead of setShapes .
- addShapeAnnotationLink(ShapeAnnotationLink) - Method in class ome.model.roi.Shape
-
use instead of setAnnotationLinks .
- addShapeAnnotationLink(ShapeAnnotationLink, boolean) - Method in class ome.model.roi.Shape
-
Adds a ome.model.annotations.ShapeAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addShapeAnnotationLink will be called on the addition if it is loaded
- addShapeAnnotationLinkSet(Collection<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape
-
use like addShapeAnnotationLink.
- addShapeSet(Collection<Shape>) - Method in class ome.model.roi.Roi
-
use like addShape.
- addString(String, String) - Method in class ome.parameters.Parameters
-
- addThumbnail(Thumbnail) - Method in class ome.model.core.Pixels
-
use instead of setThumbnails .
- addThumbnailSet(Collection<Thumbnail>) - Method in class ome.model.core.Pixels
-
use like addThumbnail.
- addViolation(ACLViolation) - Method in exception ome.conditions.acl.CollectedACLViolations
-
- addWell(Well) - Method in class ome.model.screen.Plate
-
use instead of setWells .
- addWellAnnotationLink(WellAnnotationLink) - Method in class ome.model.screen.Well
-
use instead of setAnnotationLinks .
- addWellAnnotationLink(WellAnnotationLink, boolean) - Method in class ome.model.screen.Well
-
Adds a ome.model.annotations.WellAnnotationLink to annotationLinks, allowing for recursion -- whether
or not addWellAnnotationLink will be called on the addition if it is loaded
- addWellAnnotationLinkSet(Collection<WellAnnotationLink>) - Method in class ome.model.screen.Well
-
use like addWellAnnotationLink.
- addWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Reagent
-
use instead of setWellLinks .
- addWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Reagent
-
Adds a ome.model.screen.WellReagentLink to wellLinks, allowing for recursion -- whether
or not addWellReagentLink will be called on the addition if it is loaded
- addWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Well
-
use instead of setReagentLinks .
- addWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Well
-
Adds a ome.model.screen.WellReagentLink to reagentLinks, allowing for recursion -- whether
or not addWellReagentLink will be called on the addition if it is loaded
- addWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Reagent
-
use like addWellReagentLink.
- addWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Well
-
use like addWellReagentLink.
- addWellSample(WellSample) - Method in class ome.model.core.Image
-
use instead of setWellSamples .
- addWellSample(WellSample) - Method in class ome.model.screen.PlateAcquisition
-
use instead of setWellSample .
- addWellSample(WellSample) - Method in class ome.model.screen.Well
-
use instead of setWellSamples .
- addWellSampleSet(Collection<WellSample>) - Method in class ome.model.core.Image
-
use like addWellSample.
- addWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.PlateAcquisition
-
use like addWellSample.
- addWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.Well
-
use like addWellSample.
- addWellSet(Collection<Well>) - Method in class ome.model.screen.Plate
-
use like addWell.
- AdminPrivilege - Class in ome.model.enums
-
- AdminPrivilege() - Constructor for class ome.model.enums.AdminPrivilege
-
- AdminPrivilege(Long) - Constructor for class ome.model.enums.AdminPrivilege
-
- AdminPrivilege(Long, boolean) - Constructor for class ome.model.enums.AdminPrivilege
-
Main constructor.
- AdminPrivilege(String) - Constructor for class ome.model.enums.AdminPrivilege
-
- AdminPrivilege.Details - Class in ome.model.enums
-
- AffineTransform - Class in ome.model.roi
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- AffineTransform() - Constructor for class ome.model.roi.AffineTransform
-
- AffineTransform(Long) - Constructor for class ome.model.roi.AffineTransform
-
- AffineTransform(Long, boolean) - Constructor for class ome.model.roi.AffineTransform
-
Main constructor.
- AffineTransform(Double, Double, Double, Double, Double, Double) - Constructor for class ome.model.roi.AffineTransform
-
- AffineTransform.Details - Class in ome.model.roi
-
- afterFilter(String, Object) - Method in class ome.util.ContextFilter
-
- afterPropertiesSet() - Method in class ome.util.MapPut
-
- airPressure - Variable in class ome.model.acquisition.ImagingEnvironment
-
- AIRPRESSURE - Static variable in class ome.model.acquisition.ImagingEnvironment
-
- ALGORITHM - Static variable in class ome.parameters.Parameters
-
named parameter "algorithm".
- allExps() - Method in class ome.parameters.Parameters
-
- alpha - Variable in class ome.model.core.Channel
-
- ALPHA - Static variable in class ome.model.core.Channel
-
- alpha - Variable in class ome.model.display.ChannelBinding
-
- ALPHA - Static variable in class ome.model.display.ChannelBinding
-
- alpha - Variable in class ome.model.screen.Well
-
- ALPHA - Static variable in class ome.model.screen.Well
-
- amplificationGain - Variable in class ome.model.acquisition.Detector
-
- AMPLIFICATIONGAIN - Static variable in class ome.model.acquisition.Detector
-
- ANNOTATERESTRICTION - Static variable in class ome.model.internal.Permissions
-
- Annotation - Class in ome.model.annotations
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- Annotation() - Constructor for class ome.model.annotations.Annotation
-
- Annotation(Long) - Constructor for class ome.model.annotations.Annotation
-
- Annotation(Long, boolean) - Constructor for class ome.model.annotations.Annotation
-
Main constructor.
- Annotation.Details - Class in ome.model.annotations
-
- AnnotationAnnotationLink - Class in ome.model.annotations
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- AnnotationAnnotationLink() - Constructor for class ome.model.annotations.AnnotationAnnotationLink
-
- AnnotationAnnotationLink(Long) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
-
- AnnotationAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
-
Main constructor.
- AnnotationAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
-
- AnnotationAnnotationLink.Details - Class in ome.model.annotations
-
- annotationLinks - Variable in class ome.model.acquisition.Detector
-
- ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
-
- annotationLinks - Variable in class ome.model.acquisition.Dichroic
-
- ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
-
- annotationLinks - Variable in class ome.model.acquisition.Filter
-
- ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
-
- annotationLinks - Variable in class ome.model.acquisition.Instrument
-
- ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
-
- annotationLinks - Variable in class ome.model.acquisition.LightPath
-
- ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
-
- annotationLinks - Variable in class ome.model.acquisition.LightSource
-
- ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
-
- annotationLinks - Variable in class ome.model.acquisition.Objective
-
- ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
-
- annotationLinks - Variable in class ome.model.annotations.Annotation
-
- ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
-
- annotationLinks - Variable in class ome.model.containers.Dataset
-
- ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
-
- annotationLinks - Variable in class ome.model.containers.Folder
-
- ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
-
- annotationLinks - Variable in class ome.model.containers.Project
-
- ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
-
- annotationLinks - Variable in class ome.model.core.Channel
-
- ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
-
- annotationLinks - Variable in class ome.model.core.Image
-
- ANNOTATIONLINKS - Static variable in class ome.model.core.Image
-
- annotationLinks - Variable in class ome.model.core.OriginalFile
-
- ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
-
- annotationLinks - Variable in class ome.model.core.PlaneInfo
-
- ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
-
- annotationLinks - Variable in class ome.model.fs.Fileset
-
- ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
-
- annotationLinks - Variable in class ome.model.meta.Experimenter
-
- ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
-
- annotationLinks - Variable in class ome.model.meta.ExperimenterGroup
-
- ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
-
- annotationLinks - Variable in class ome.model.meta.Namespace
-
- ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
-
- annotationLinks - Variable in class ome.model.meta.Node
-
- ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
-
- annotationLinks - Variable in class ome.model.meta.Session
-
- ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
-
- annotationLinks - Variable in class ome.model.roi.Roi
-
- ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
-
- annotationLinks - Variable in class ome.model.roi.Shape
-
- ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
-
- annotationLinks - Variable in class ome.model.screen.Plate
-
- ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
-
- annotationLinks - Variable in class ome.model.screen.PlateAcquisition
-
- ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
-
- annotationLinks - Variable in class ome.model.screen.Reagent
-
- ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
-
- annotationLinks - Variable in class ome.model.screen.Screen
-
- ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
-
- annotationLinks - Variable in class ome.model.screen.Well
-
- ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Detector
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Dichroic
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Instrument
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightSource
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Objective
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.annotations.Annotation
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Project
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Channel
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.OriginalFile
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.PlaneInfo
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.fs.Fileset
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Experimenter
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.ExperimenterGroup
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Namespace
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Node
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Session
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Roi
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Shape
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Plate
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.PlateAcquisition
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Reagent
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Screen
-
- ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Well
-
- ApiUsageException - Exception in ome.conditions
-
Alerts a user to a misuse of an Omero method call.
- ApiUsageException(String) - Constructor for exception ome.conditions.ApiUsageException
-
- Arc - Class in ome.model.acquisition
-
- Arc() - Constructor for class ome.model.acquisition.Arc
-
- Arc(Long) - Constructor for class ome.model.acquisition.Arc
-
- Arc(Long, boolean) - Constructor for class ome.model.acquisition.Arc
-
Main constructor.
- Arc(ArcType) - Constructor for class ome.model.acquisition.Arc
-
- archived - Variable in class ome.model.core.Image
-
- ARCHIVED - Static variable in class ome.model.core.Image
-
- ArcType - Class in ome.model.enums
-
- ArcType() - Constructor for class ome.model.enums.ArcType
-
- ArcType(Long) - Constructor for class ome.model.enums.ArcType
-
- ArcType(Long, boolean) - Constructor for class ome.model.enums.ArcType
-
Main constructor.
- ArcType(String) - Constructor for class ome.model.enums.ArcType
-
- ArcType.Details - Class in ome.model.enums
-
- args() - Method in class ome.util.SqlAction.DeleteLog
-
- asBigInteger() - Method in class ome.util.Counter
-
- assemble(Serializable, Object) - Method in class ome.model.units.GenericEnumType
-
- atime - Variable in class ome.model.core.OriginalFile
-
- ATIME - Static variable in class ome.model.core.OriginalFile
-
- attenuation - Variable in class ome.model.acquisition.LightSettings
-
- ATTENUATION - Static variable in class ome.model.acquisition.LightSettings
-
- AuthenticationException - Exception in ome.conditions
-
Invalid username and/or credential provided.
- AuthenticationException(String) - Constructor for exception ome.conditions.AuthenticationException
-
- axis - Variable in class ome.model.display.ProjectionDef
-
- AXIS - Static variable in class ome.model.display.ProjectionDef
-
- c2c() - Method in class ome.util.ModelMapper
-
TODO identity versus null mappings
- cache() - Method in class ome.parameters.Parameters
-
- cacheable - Variable in class ome.parameters.Options
-
- calibratedMagnification - Variable in class ome.model.acquisition.Objective
-
- CALIBRATEDMAGNIFICATION - Static variable in class ome.model.acquisition.Objective
-
- call(IObject) - Method in interface ome.util.CBlock
-
invoke this block.
- call(IObject) - Method in class ome.util.IdBlock
-
- CBlock<E> - Interface in ome.util
-
Block template used to "C"ollect the results of some function called on each
IObject
in a collection.
- cdEnd - Variable in class ome.model.display.QuantumDef
-
- CDEND - Static variable in class ome.model.display.QuantumDef
-
- cdStart - Variable in class ome.model.display.QuantumDef
-
- CDSTART - Static variable in class ome.model.display.QuantumDef
-
- CGLIB_IDENTIFIER - Static variable in class ome.util.Utils
-
- changeGroupPermissions(Long, Long) - Method in interface ome.util.SqlAction
-
- changeGroupPermissions(Long, Long) - Method in class ome.util.SqlAction.Impl
-
- changeTablePermissionsForGroup(String, Long, Long) - Method in interface ome.util.SqlAction
-
- changeTablePermissionsForGroup(String, Long, Long) - Method in class ome.util.SqlAction.Impl
-
- Channel - Class in ome.model.core
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- Channel() - Constructor for class ome.model.core.Channel
-
- Channel(Long) - Constructor for class ome.model.core.Channel
-
- Channel(Long, boolean) - Constructor for class ome.model.core.Channel
-
Main constructor.
- Channel(LogicalChannel, Pixels) - Constructor for class ome.model.core.Channel
-
- Channel.Details - Class in ome.model.core
-
- ChannelAnnotationLink - Class in ome.model.annotations
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- ChannelAnnotationLink() - Constructor for class ome.model.annotations.ChannelAnnotationLink
-
- ChannelAnnotationLink(Long) - Constructor for class ome.model.annotations.ChannelAnnotationLink
-
- ChannelAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ChannelAnnotationLink
-
Main constructor.
- ChannelAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ChannelAnnotationLink
-
- ChannelAnnotationLink.Details - Class in ome.model.annotations
-
- ChannelBinding - Class in ome.model.display
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- ChannelBinding() - Constructor for class ome.model.display.ChannelBinding
-
- ChannelBinding(Long) - Constructor for class ome.model.display.ChannelBinding
-
- ChannelBinding(Long, boolean) - Constructor for class ome.model.display.ChannelBinding
-
Main constructor.
- ChannelBinding(RenderingDef, Family, Double, Double, Double, Boolean, Boolean, Integer, Integer, Integer, Integer) - Constructor for class ome.model.display.ChannelBinding
-
- channelBinding - Variable in class ome.model.display.CodomainMapContext
-
- CHANNELBINDING - Static variable in class ome.model.display.CodomainMapContext
-
- ChannelBinding.Details - Class in ome.model.display
-
- channels - Variable in class ome.model.core.LogicalChannel
-
- CHANNELS - Static variable in class ome.model.core.LogicalChannel
-
- channels - Variable in class ome.model.core.Pixels
-
- CHANNELS - Static variable in class ome.model.core.Pixels
-
- ChecksumAlgorithm - Class in ome.model.enums
-
- ChecksumAlgorithm() - Constructor for class ome.model.enums.ChecksumAlgorithm
-
- ChecksumAlgorithm(Long) - Constructor for class ome.model.enums.ChecksumAlgorithm
-
- ChecksumAlgorithm(Long, boolean) - Constructor for class ome.model.enums.ChecksumAlgorithm
-
Main constructor.
- ChecksumAlgorithm(String) - Constructor for class ome.model.enums.ChecksumAlgorithm
-
- ChecksumAlgorithm.Details - Class in ome.model.enums
-
- CHGRPRESTRICTION - Static variable in class ome.model.internal.Permissions
-
- child - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
-
- CHILD - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
-
- child() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
-
- child - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
-
- CHILD - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
-
- child() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
-
- child - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
-
- CHILD - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
-
- child() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
-
- child - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
-
- CHILD - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
-
- child() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
-
- child - Variable in class ome.model.annotations.AnnotationAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.AnnotationAnnotationLink
-
- child() - Method in class ome.model.annotations.AnnotationAnnotationLink
-
- child - Variable in class ome.model.annotations.ChannelAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.ChannelAnnotationLink
-
- child() - Method in class ome.model.annotations.ChannelAnnotationLink
-
- child - Variable in class ome.model.annotations.DatasetAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.DatasetAnnotationLink
-
- child() - Method in class ome.model.annotations.DatasetAnnotationLink
-
- child - Variable in class ome.model.annotations.DetectorAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.DetectorAnnotationLink
-
- child() - Method in class ome.model.annotations.DetectorAnnotationLink
-
- child - Variable in class ome.model.annotations.DichroicAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.DichroicAnnotationLink
-
- child() - Method in class ome.model.annotations.DichroicAnnotationLink
-
- child - Variable in class ome.model.annotations.ExperimenterAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
-
- child() - Method in class ome.model.annotations.ExperimenterAnnotationLink
-
- child - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- child() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- child - Variable in class ome.model.annotations.FilesetAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.FilesetAnnotationLink
-
- child() - Method in class ome.model.annotations.FilesetAnnotationLink
-
- child - Variable in class ome.model.annotations.FilterAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.FilterAnnotationLink
-
- child() - Method in class ome.model.annotations.FilterAnnotationLink
-
- child - Variable in class ome.model.annotations.FolderAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.FolderAnnotationLink
-
- child() - Method in class ome.model.annotations.FolderAnnotationLink
-
- child - Variable in class ome.model.annotations.ImageAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.ImageAnnotationLink
-
- child() - Method in class ome.model.annotations.ImageAnnotationLink
-
- child - Variable in class ome.model.annotations.InstrumentAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.InstrumentAnnotationLink
-
- child() - Method in class ome.model.annotations.InstrumentAnnotationLink
-
- child - Variable in class ome.model.annotations.LightPathAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.LightPathAnnotationLink
-
- child() - Method in class ome.model.annotations.LightPathAnnotationLink
-
- child - Variable in class ome.model.annotations.LightSourceAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.LightSourceAnnotationLink
-
- child() - Method in class ome.model.annotations.LightSourceAnnotationLink
-
- child - Variable in class ome.model.annotations.NamespaceAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.NamespaceAnnotationLink
-
- child() - Method in class ome.model.annotations.NamespaceAnnotationLink
-
- child - Variable in class ome.model.annotations.NodeAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.NodeAnnotationLink
-
- child() - Method in class ome.model.annotations.NodeAnnotationLink
-
- child - Variable in class ome.model.annotations.ObjectiveAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
-
- child() - Method in class ome.model.annotations.ObjectiveAnnotationLink
-
- child - Variable in class ome.model.annotations.OriginalFileAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
-
- child() - Method in class ome.model.annotations.OriginalFileAnnotationLink
-
- child - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
-
- child() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
-
- child - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
-
- child() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
-
- child - Variable in class ome.model.annotations.PlateAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.PlateAnnotationLink
-
- child() - Method in class ome.model.annotations.PlateAnnotationLink
-
- child - Variable in class ome.model.annotations.ProjectAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.ProjectAnnotationLink
-
- child() - Method in class ome.model.annotations.ProjectAnnotationLink
-
- child - Variable in class ome.model.annotations.ReagentAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.ReagentAnnotationLink
-
- child() - Method in class ome.model.annotations.ReagentAnnotationLink
-
- child - Variable in class ome.model.annotations.RoiAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.RoiAnnotationLink
-
- child() - Method in class ome.model.annotations.RoiAnnotationLink
-
- child - Variable in class ome.model.annotations.ScreenAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.ScreenAnnotationLink
-
- child() - Method in class ome.model.annotations.ScreenAnnotationLink
-
- child - Variable in class ome.model.annotations.SessionAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.SessionAnnotationLink
-
- child() - Method in class ome.model.annotations.SessionAnnotationLink
-
- child - Variable in class ome.model.annotations.ShapeAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.ShapeAnnotationLink
-
- child() - Method in class ome.model.annotations.ShapeAnnotationLink
-
- child - Variable in class ome.model.annotations.WellAnnotationLink
-
- CHILD - Static variable in class ome.model.annotations.WellAnnotationLink
-
- child() - Method in class ome.model.annotations.WellAnnotationLink
-
- child - Variable in class ome.model.containers.DatasetImageLink
-
- CHILD - Static variable in class ome.model.containers.DatasetImageLink
-
- child() - Method in class ome.model.containers.DatasetImageLink
-
- child - Variable in class ome.model.containers.FolderImageLink
-
- CHILD - Static variable in class ome.model.containers.FolderImageLink
-
- child() - Method in class ome.model.containers.FolderImageLink
-
- child - Variable in class ome.model.containers.FolderRoiLink
-
- CHILD - Static variable in class ome.model.containers.FolderRoiLink
-
- child() - Method in class ome.model.containers.FolderRoiLink
-
- child - Variable in class ome.model.containers.ProjectDatasetLink
-
- CHILD - Static variable in class ome.model.containers.ProjectDatasetLink
-
- child() - Method in class ome.model.containers.ProjectDatasetLink
-
- child - Variable in class ome.model.core.PixelsOriginalFileMap
-
- CHILD - Static variable in class ome.model.core.PixelsOriginalFileMap
-
- child() - Method in class ome.model.core.PixelsOriginalFileMap
-
- child - Variable in class ome.model.fs.FilesetJobLink
-
- CHILD - Static variable in class ome.model.fs.FilesetJobLink
-
- child() - Method in class ome.model.fs.FilesetJobLink
-
- child - Variable in class ome.model.jobs.JobOriginalFileLink
-
- CHILD - Static variable in class ome.model.jobs.JobOriginalFileLink
-
- child() - Method in class ome.model.jobs.JobOriginalFileLink
-
- child - Variable in class ome.model.meta.GroupExperimenterMap
-
- CHILD - Static variable in class ome.model.meta.GroupExperimenterMap
-
- child() - Method in class ome.model.meta.GroupExperimenterMap
-
- child - Variable in class ome.model.meta.ShareMember
-
- CHILD - Static variable in class ome.model.meta.ShareMember
-
- child() - Method in class ome.model.meta.ShareMember
-
- child - Variable in class ome.model.screen.ScreenPlateLink
-
- CHILD - Static variable in class ome.model.screen.ScreenPlateLink
-
- child() - Method in class ome.model.screen.ScreenPlateLink
-
- child - Variable in class ome.model.screen.WellReagentLink
-
- CHILD - Static variable in class ome.model.screen.WellReagentLink
-
- child() - Method in class ome.model.screen.WellReagentLink
-
- childFolders - Variable in class ome.model.containers.Folder
-
- CHILDFOLDERS - Static variable in class ome.model.containers.Folder
-
- CHOWNRESTRICTION - Static variable in class ome.model.internal.Permissions
-
- CLASS - Static variable in class ome.parameters.Parameters
-
named parameter "class".
- clearAnnotationLinks() - Method in class ome.model.acquisition.Detector
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.acquisition.Dichroic
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.acquisition.Filter
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.acquisition.Instrument
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.acquisition.LightPath
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.acquisition.LightSource
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.acquisition.Objective
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.annotations.Annotation
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.containers.Dataset
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.containers.Folder
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.containers.Project
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.core.Channel
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.core.Image
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.core.OriginalFile
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.core.PlaneInfo
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.fs.Fileset
-
clears the set.
- clearAnnotationLinks() - Method in interface ome.model.IAnnotated
-
- clearAnnotationLinks() - Method in class ome.model.meta.Experimenter
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.meta.Namespace
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.meta.Node
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.meta.Session
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.roi.Roi
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.roi.Shape
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.screen.Plate
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.screen.Reagent
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.screen.Screen
-
clears the set.
- clearAnnotationLinks() - Method in class ome.model.screen.Well
-
clears the set.
- clearChannels() - Method in class ome.model.core.LogicalChannel
-
clears the set.
- clearChannels() - Method in class ome.model.core.Pixels
-
clears the set.
- clearChildFolders() - Method in class ome.model.containers.Folder
-
clears the set.
- clearDatasetLinks() - Method in class ome.model.containers.Project
-
clears the set.
- clearDatasetLinks() - Method in class ome.model.core.Image
-
clears the set.
- clearDetector() - Method in class ome.model.acquisition.Instrument
-
clears the set.
- clearDichroic() - Method in class ome.model.acquisition.Instrument
-
clears the set.
- clearEmissionFilterLinks() - Method in class ome.model.acquisition.Filter
-
clears the set.
- clearEmissionFilterLinks() - Method in class ome.model.acquisition.FilterSet
-
clears the set.
- clearEmissionFilterLinks() - Method in class ome.model.acquisition.LightPath
-
clears the set.
- clearEvents() - Method in class ome.model.meta.Session
-
clears the set.
- clearExcitationFilterLinks() - Method in class ome.model.acquisition.Filter
-
clears the set.
- clearExcitationFilterLinks() - Method in class ome.model.acquisition.FilterSet
-
clears the set.
- clearExcitationFilterLinks() - Method in class ome.model.acquisition.LightPath
-
clears the set.
- clearExperimenterGroupLinks() - Method in class ome.model.meta.Experimenter
-
clears the set.
- clearExperimenterLinks() - Method in class ome.model.meta.ExperimenterGroup
-
clears the set.
- clearFilesetEntries() - Method in class ome.model.core.OriginalFile
-
clears the set.
- clearFilter() - Method in class ome.model.acquisition.Instrument
-
clears the set.
- clearFiltered() - Method in class ome.model.internal.Details
-
all currently marked collections are released.
- clearFilterSet() - Method in class ome.model.acquisition.Instrument
-
clears the set.
- clearFolderLinks() - Method in class ome.model.core.Image
-
clears the set.
- clearFolderLinks() - Method in class ome.model.roi.Roi
-
clears the set.
- clearImageLinks() - Method in class ome.model.containers.Dataset
-
clears the set.
- clearImageLinks() - Method in class ome.model.containers.Folder
-
clears the set.
- clearImages() - Method in class ome.model.fs.Fileset
-
clears the set.
- clearJobLinks() - Method in class ome.model.fs.Fileset
-
clears the set.
- clearLightSource() - Method in class ome.model.acquisition.Instrument
-
clears the set.
- clearLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation
-
clears the set.
- clearLogs() - Method in class ome.model.meta.Event
-
clears the set.
- clearMicrobeamManipulation() - Method in class ome.model.experiment.Experiment
-
clears the set.
- clearObjective() - Method in class ome.model.acquisition.Instrument
-
clears the set.
- clearOriginalFileLinks() - Method in class ome.model.core.Pixels
-
clears the set.
- clearOriginalFileLinks() - Method in class ome.model.jobs.Job
-
clears the set.
- clearOtf() - Method in class ome.model.acquisition.Instrument
-
clears the set.
- clearPermissionsBit(String, long, int) - Method in interface ome.util.SqlAction
-
Sets the given permissions bit to 0
.
- clearPermissionsBit(String, long, int) - Method in class ome.util.SqlAction.Impl
-
- clearPixels() - Method in class ome.model.core.Image
-
clears the set.
- clearPixelsLinks() - Method in class ome.model.core.OriginalFile
-
clears the set.
- clearPlaneInfo() - Method in class ome.model.core.Pixels
-
clears the set.
- clearPlateAcquisitions() - Method in class ome.model.screen.Plate
-
clears the set.
- clearPlateLinks() - Method in class ome.model.screen.Screen
-
clears the set.
- clearProjections() - Method in class ome.model.display.RenderingDef
-
clears the set.
- clearProjectLinks() - Method in class ome.model.containers.Dataset
-
clears the set.
- clearReagentLinks() - Method in class ome.model.screen.Well
-
clears the set.
- clearReagents() - Method in class ome.model.screen.Screen
-
clears the set.
- clearRoiLinks() - Method in class ome.model.containers.Folder
-
clears the set.
- clearRois() - Method in class ome.model.core.Image
-
clears the set.
- clearScreenLinks() - Method in class ome.model.screen.Plate
-
clears the set.
- clearSessions() - Method in class ome.model.meta.Node
-
clears the set.
- clearSettings() - Method in class ome.model.core.Pixels
-
clears the set.
- clearShapes() - Method in class ome.model.roi.Roi
-
clears the set.
- clearSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding
-
clears the set.
- clearThumbnails() - Method in class ome.model.core.Pixels
-
clears the set.
- clearUsedFiles() - Method in class ome.model.fs.Fileset
-
clears the set.
- clearWaveRendering() - Method in class ome.model.display.RenderingDef
-
clears the set.
- clearWellLinks() - Method in class ome.model.screen.Reagent
-
clears the set.
- clearWells() - Method in class ome.model.screen.Plate
-
clears the set.
- clearWellSample() - Method in class ome.model.screen.PlateAcquisition
-
clears the set.
- clearWellSamples() - Method in class ome.model.core.Image
-
clears the set.
- clearWellSamples() - Method in class ome.model.screen.Well
-
clears the set.
- clientPath - Variable in class ome.model.fs.FilesetEntry
-
- CLIENTPATH - Static variable in class ome.model.fs.FilesetEntry
-
- close() - Method in class ome.services.fulltext.ConfiguredAnalyzer
-
- closed - Variable in class ome.model.meta.Session
-
- CLOSED - Static variable in class ome.model.meta.Session
-
- closeNode(String) - Method in interface ome.util.SqlAction
-
- closeNode(String) - Method in class ome.util.SqlAction.Impl
-
- closeNodeSessions(String) - Method in interface ome.util.SqlAction
-
- closeNodeSessions(String) - Method in class ome.util.SqlAction.Impl
-
- closeQuietly(Closeable) - Static method in class ome.util.Utils
-
- closeSessions(String) - Method in class ome.util.actions.PostgresSqlAction
-
- closeSessions(String) - Method in interface ome.util.SqlAction
-
- co2percent - Variable in class ome.model.acquisition.ImagingEnvironment
-
- CO2PERCENT - Static variable in class ome.model.acquisition.ImagingEnvironment
-
- CodomainMapContext - Class in ome.model.display
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- CodomainMapContext() - Constructor for class ome.model.display.CodomainMapContext
-
- CodomainMapContext(Long) - Constructor for class ome.model.display.CodomainMapContext
-
- CodomainMapContext(Long, boolean) - Constructor for class ome.model.display.CodomainMapContext
-
Main constructor.
- CodomainMapContext(ChannelBinding) - Constructor for class ome.model.display.CodomainMapContext
-
- CodomainMapContext.Details - Class in ome.model.display
-
- coefficient - Variable in class ome.model.display.ChannelBinding
-
- COEFFICIENT - Static variable in class ome.model.display.ChannelBinding
-
- COLLAB_READLINK - Static variable in class ome.model.internal.Permissions
-
an immutable
Permissions
instance with read and write permissions
for group members.
- COLLAB_READONLY - Static variable in class ome.model.internal.Permissions
-
an immutable
Permissions
instance with permissions for group
members to read other members' data.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Detector
-
takes a CBlock and calls the block once for each ome.model.annotations.DetectorAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Dichroic
-
takes a CBlock and calls the block once for each ome.model.annotations.DichroicAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Filter
-
takes a CBlock and calls the block once for each ome.model.annotations.FilterAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Instrument
-
takes a CBlock and calls the block once for each ome.model.annotations.InstrumentAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.LightPath
-
takes a CBlock and calls the block once for each ome.model.annotations.LightPathAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.LightSource
-
takes a CBlock and calls the block once for each ome.model.annotations.LightSourceAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Objective
-
takes a CBlock and calls the block once for each ome.model.annotations.ObjectiveAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.annotations.Annotation
-
takes a CBlock and calls the block once for each ome.model.annotations.AnnotationAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Dataset
-
takes a CBlock and calls the block once for each ome.model.annotations.DatasetAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Folder
-
takes a CBlock and calls the block once for each ome.model.annotations.FolderAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Project
-
takes a CBlock and calls the block once for each ome.model.annotations.ProjectAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.Channel
-
takes a CBlock and calls the block once for each ome.model.annotations.ChannelAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.Image
-
takes a CBlock and calls the block once for each ome.model.annotations.ImageAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.OriginalFile
-
takes a CBlock and calls the block once for each ome.model.annotations.OriginalFileAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.PlaneInfo
-
takes a CBlock and calls the block once for each ome.model.annotations.PlaneInfoAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.fs.Fileset
-
takes a CBlock and calls the block once for each ome.model.annotations.FilesetAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in interface ome.model.IAnnotated
-
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Experimenter
-
takes a CBlock and calls the block once for each ome.model.annotations.ExperimenterAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
-
takes a CBlock and calls the block once for each ome.model.annotations.ExperimenterGroupAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Namespace
-
takes a CBlock and calls the block once for each ome.model.annotations.NamespaceAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Node
-
takes a CBlock and calls the block once for each ome.model.annotations.NodeAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Session
-
takes a CBlock and calls the block once for each ome.model.annotations.SessionAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.roi.Roi
-
takes a CBlock and calls the block once for each ome.model.annotations.RoiAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.roi.Shape
-
takes a CBlock and calls the block once for each ome.model.annotations.ShapeAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Plate
-
takes a CBlock and calls the block once for each ome.model.annotations.PlateAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition
-
takes a CBlock and calls the block once for each ome.model.annotations.PlateAcquisitionAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Reagent
-
takes a CBlock and calls the block once for each ome.model.annotations.ReagentAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Screen
-
takes a CBlock and calls the block once for each ome.model.annotations.ScreenAnnotationLink while
collecting the results.
- collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Well
-
takes a CBlock and calls the block once for each ome.model.annotations.WellAnnotationLink while
collecting the results.
- collectChannels(CBlock<E>) - Method in class ome.model.core.LogicalChannel
-
takes a CBlock and calls the block once for each ome.model.core.Channel while
collecting the results.
- collectChannels(CBlock<E>) - Method in class ome.model.core.Pixels
-
takes a CBlock and calls the block once for each ome.model.core.Channel while
collecting the results.
- collectChildFolders(CBlock<E>) - Method in class ome.model.containers.Folder
-
takes a CBlock and calls the block once for each ome.model.containers.Folder while
collecting the results.
- collectDatasetLinks(CBlock<E>) - Method in class ome.model.containers.Project
-
takes a CBlock and calls the block once for each ome.model.containers.ProjectDatasetLink while
collecting the results.
- collectDatasetLinks(CBlock<E>) - Method in class ome.model.core.Image
-
takes a CBlock and calls the block once for each ome.model.containers.DatasetImageLink while
collecting the results.
- collectDetector(CBlock<E>) - Method in class ome.model.acquisition.Instrument
-
takes a CBlock and calls the block once for each ome.model.acquisition.Detector while
collecting the results.
- collectDichroic(CBlock<E>) - Method in class ome.model.acquisition.Instrument
-
takes a CBlock and calls the block once for each ome.model.acquisition.Dichroic while
collecting the results.
- CollectedACLViolations - Exception in ome.conditions.acl
-
User has attempted an action which is not permitted by the
Permissions
of a given instance.
- CollectedACLViolations(String) - Constructor for exception ome.conditions.acl.CollectedACLViolations
-
- collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.Filter
-
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetEmissionFilterLink while
collecting the results.
- collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
-
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetEmissionFilterLink while
collecting the results.
- collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.LightPath
-
takes a CBlock and calls the block once for each ome.model.acquisition.LightPathEmissionFilterLink while
collecting the results.
- collectEvents(CBlock<E>) - Method in class ome.model.meta.Session
-
takes a CBlock and calls the block once for each ome.model.meta.Event while
collecting the results.
- collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.Filter
-
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetExcitationFilterLink while
collecting the results.
- collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
-
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetExcitationFilterLink while
collecting the results.
- collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.LightPath
-
takes a CBlock and calls the block once for each ome.model.acquisition.LightPathExcitationFilterLink while
collecting the results.
- collectFilesetEntries(CBlock<E>) - Method in class ome.model.core.OriginalFile
-
takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while
collecting the results.
- collectFilter(CBlock<E>) - Method in class ome.model.acquisition.Instrument
-
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while
collecting the results.
- collectFilterSet(CBlock<E>) - Method in class ome.model.acquisition.Instrument
-
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while
collecting the results.
- collectFolderLinks(CBlock<E>) - Method in class ome.model.core.Image
-
takes a CBlock and calls the block once for each ome.model.containers.FolderImageLink while
collecting the results.
- collectFolderLinks(CBlock<E>) - Method in class ome.model.roi.Roi
-
takes a CBlock and calls the block once for each ome.model.containers.FolderRoiLink while
collecting the results.
- collectGroupExperimenterMap(CBlock<E>) - Method in class ome.model.meta.Experimenter
-
takes a CBlock and calls the block once for each ome.model.meta.GroupExperimenterMap while
collecting the results.
- collectGroupExperimenterMap(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
-
takes a CBlock and calls the block once for each ome.model.meta.GroupExperimenterMap while
collecting the results.
- collectImageLinks(CBlock<E>) - Method in class ome.model.containers.Dataset
-
takes a CBlock and calls the block once for each ome.model.containers.DatasetImageLink while
collecting the results.
- collectImageLinks(CBlock<E>) - Method in class ome.model.containers.Folder
-
takes a CBlock and calls the block once for each ome.model.containers.FolderImageLink while
collecting the results.
- collectImages(CBlock<E>) - Method in class ome.model.fs.Fileset
-
takes a CBlock and calls the block once for each ome.model.core.Image while
collecting the results.
- collectJobLinks(CBlock<E>) - Method in class ome.model.fs.Fileset
-
takes a CBlock and calls the block once for each ome.model.fs.FilesetJobLink while
collecting the results.
- collectLightSource(CBlock<E>) - Method in class ome.model.acquisition.Instrument
-
takes a CBlock and calls the block once for each ome.model.acquisition.LightSource while
collecting the results.
- collectLightSourceSettings(CBlock<E>) - Method in class ome.model.experiment.MicrobeamManipulation
-
takes a CBlock and calls the block once for each ome.model.acquisition.LightSettings while
collecting the results.
- collectLogs(CBlock<E>) - Method in class ome.model.meta.Event
-
takes a CBlock and calls the block once for each ome.model.meta.EventLog while
collecting the results.
- collectMicrobeamManipulation(CBlock<E>) - Method in class ome.model.experiment.Experiment
-
takes a CBlock and calls the block once for each ome.model.experiment.MicrobeamManipulation while
collecting the results.
- collectObjective(CBlock<E>) - Method in class ome.model.acquisition.Instrument
-
takes a CBlock and calls the block once for each ome.model.acquisition.Objective while
collecting the results.
- collectOriginalFileLinks(CBlock<E>) - Method in class ome.model.jobs.Job
-
takes a CBlock and calls the block once for each ome.model.jobs.JobOriginalFileLink while
collecting the results.
- collectOtf(CBlock<E>) - Method in class ome.model.acquisition.Instrument
-
takes a CBlock and calls the block once for each ome.model.acquisition.OTF while
collecting the results.
- collectPixels(CBlock<E>) - Method in class ome.model.core.Image
-
takes a CBlock and calls the block once for each ome.model.core.Pixels while
collecting the results.
- collectPixelsFileMaps(CBlock<E>) - Method in class ome.model.core.OriginalFile
-
takes a CBlock and calls the block once for each ome.model.core.PixelsOriginalFileMap while
collecting the results.
- collectPixelsFileMaps(CBlock<E>) - Method in class ome.model.core.Pixels
-
takes a CBlock and calls the block once for each ome.model.core.PixelsOriginalFileMap while
collecting the results.
- collectPlaneInfo(CBlock<E>) - Method in class ome.model.core.Pixels
-
takes a CBlock and calls the block once for each ome.model.core.PlaneInfo while
collecting the results.
- collectPlateAcquisitions(CBlock<E>) - Method in class ome.model.screen.Plate
-
takes a CBlock and calls the block once for each ome.model.screen.PlateAcquisition while
collecting the results.
- collectPlateLinks(CBlock<E>) - Method in class ome.model.screen.Screen
-
takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while
collecting the results.
- collectProjections(CBlock<E>) - Method in class ome.model.display.RenderingDef
-
takes a CBlock and calls the block once for each ome.model.display.ProjectionDef while
collecting the results.
- collectProjectLinks(CBlock<E>) - Method in class ome.model.containers.Dataset
-
takes a CBlock and calls the block once for each ome.model.containers.ProjectDatasetLink while
collecting the results.
- collectReagentLinks(CBlock<E>) - Method in class ome.model.screen.Well
-
takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while
collecting the results.
- collectReagents(CBlock<E>) - Method in class ome.model.screen.Screen
-
takes a CBlock and calls the block once for each ome.model.screen.Reagent while
collecting the results.
- collectRoiLinks(CBlock<E>) - Method in class ome.model.containers.Folder
-
takes a CBlock and calls the block once for each ome.model.containers.FolderRoiLink while
collecting the results.
- collectRois(CBlock<E>) - Method in class ome.model.core.Image
-
takes a CBlock and calls the block once for each ome.model.roi.Roi while
collecting the results.
- collectScreenLinks(CBlock<E>) - Method in class ome.model.screen.Plate
-
takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while
collecting the results.
- collectSessions(CBlock<E>) - Method in class ome.model.meta.Node
-
takes a CBlock and calls the block once for each ome.model.meta.Session while
collecting the results.
- collectSettings(CBlock<E>) - Method in class ome.model.core.Pixels
-
takes a CBlock and calls the block once for each ome.model.display.RenderingDef while
collecting the results.
- collectShapes(CBlock<E>) - Method in class ome.model.roi.Roi
-
takes a CBlock and calls the block once for each ome.model.roi.Shape while
collecting the results.
- collectSpatialDomainEnhancement(CBlock<E>) - Method in class ome.model.display.ChannelBinding
-
takes a CBlock and calls the block once for each ome.model.display.CodomainMapContext while
collecting the results.
- collectThumbnails(CBlock<E>) - Method in class ome.model.core.Pixels
-
takes a CBlock and calls the block once for each ome.model.display.Thumbnail while
collecting the results.
- collectUsedFiles(CBlock<E>) - Method in class ome.model.fs.Fileset
-
takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while
collecting the results.
- collectWaveRendering(CBlock<E>) - Method in class ome.model.display.RenderingDef
-
takes a CBlock and calls the block once for each ome.model.display.ChannelBinding while
collecting the results.
- collectWellLinks(CBlock<E>) - Method in class ome.model.screen.Reagent
-
takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while
collecting the results.
- collectWells(CBlock<E>) - Method in class ome.model.screen.Plate
-
takes a CBlock and calls the block once for each ome.model.screen.Well while
collecting the results.
- collectWellSample(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition
-
takes a CBlock and calls the block once for each ome.model.screen.WellSample while
collecting the results.
- collectWellSamples(CBlock<E>) - Method in class ome.model.core.Image
-
takes a CBlock and calls the block once for each ome.model.screen.WellSample while
collecting the results.
- collectWellSamples(CBlock<E>) - Method in class ome.model.screen.Well
-
takes a CBlock and calls the block once for each ome.model.screen.WellSample while
collecting the results.
- column - Variable in class ome.model.screen.Well
-
- COLUMN - Static variable in class ome.model.screen.Well
-
- columnNamingConvention - Variable in class ome.model.screen.Plate
-
- COLUMNNAMINGCONVENTION - Static variable in class ome.model.screen.Plate
-
- columns - Variable in class ome.model.screen.Plate
-
- COLUMNS - Static variable in class ome.model.screen.Plate
-
- CommentAnnotation - Class in ome.model.annotations
-
- CommentAnnotation() - Constructor for class ome.model.annotations.CommentAnnotation
-
- CommentAnnotation(Long) - Constructor for class ome.model.annotations.CommentAnnotation
-
- CommentAnnotation(Long, boolean) - Constructor for class ome.model.annotations.CommentAnnotation
-
Main constructor.
- compression - Variable in class ome.model.display.RenderingDef
-
- COMPRESSION - Static variable in class ome.model.display.RenderingDef
-
- ConcurrencyException - Exception in ome.conditions
-
Error due to simultaneous access of some resource.
- ConcurrencyException(String, long) - Constructor for exception ome.conditions.ConcurrencyException
-
- config - Variable in class ome.model.meta.Experimenter
-
- CONFIG - Static variable in class ome.model.meta.Experimenter
-
- config - Variable in class ome.model.meta.ExperimenterGroup
-
- CONFIG - Static variable in class ome.model.meta.ExperimenterGroup
-
- CONFIG_KEY - Static variable in class ome.util.PixelData
-
- configure(Type, Properties, Dialect) - Method in class ome.util.TableIdGenerator
-
- ConfiguredAnalyzer - Class in ome.services.fulltext
-
A full-text search analyzer usable by the OMERO model.
- ConfiguredAnalyzer() - Constructor for class ome.services.fulltext.ConfiguredAnalyzer
-
- ConfiguredAnalyzer(Class<? extends Analyzer>) - Constructor for class ome.services.fulltext.ConfiguredAnalyzer
-
Construct an analyzer wrapping the given class.
- configValue(String) - Method in interface ome.util.SqlAction
-
- configValue(String) - Method in class ome.util.SqlAction.Impl
-
- conn - Variable in class ome.model.meta.Node
-
- CONN - Static variable in class ome.model.meta.Node
-
- constant - Variable in class ome.model.display.PlaneSlicingContext
-
- CONSTANT - Static variable in class ome.model.display.PlaneSlicingContext
-
- containingEvent - Variable in class ome.model.meta.Event
-
- CONTAININGEVENT - Static variable in class ome.model.meta.Event
-
- contextAt(int) - Method in class ome.model.internal.Details
-
- ContextFilter - Class in ome.util
-
modified (hierarchical) visitor pattern.
- ContextFilter() - Constructor for class ome.util.ContextFilter
-
- contexts - Variable in class ome.model.internal.Details
-
- contrastMethod - Variable in class ome.model.core.LogicalChannel
-
- CONTRASTMETHOD - Static variable in class ome.model.core.LogicalChannel
-
- ContrastMethod - Class in ome.model.enums
-
- ContrastMethod() - Constructor for class ome.model.enums.ContrastMethod
-
- ContrastMethod(Long) - Constructor for class ome.model.enums.ContrastMethod
-
- ContrastMethod(Long, boolean) - Constructor for class ome.model.enums.ContrastMethod
-
Main constructor.
- ContrastMethod(String) - Constructor for class ome.model.enums.ContrastMethod
-
- ContrastMethod.Details - Class in ome.model.enums
-
- ContrastStretchingContext - Class in ome.model.display
-
- ContrastStretchingContext() - Constructor for class ome.model.display.ContrastStretchingContext
-
- ContrastStretchingContext(Long) - Constructor for class ome.model.display.ContrastStretchingContext
-
- ContrastStretchingContext(Long, boolean) - Constructor for class ome.model.display.ContrastStretchingContext
-
Main constructor.
- ContrastStretchingContext(Integer, Integer, Integer, Integer) - Constructor for class ome.model.display.ContrastStretchingContext
-
- Conversion - Class in ome.model.units
-
Base-functor like object which can be used for preparing complex
equations for converting from one unit to another.
- Conversion(Conversion...) - Constructor for class ome.model.units.Conversion
-
- Conversion.Add - Class in ome.model.units
-
Sums all
Conversion
instances via
BigDecimal.add(BigDecimal)
.
- Conversion.Int - Class in ome.model.units
-
Simply is a representation of a possibly large integer.
- Conversion.Mul - Class in ome.model.units
-
Multiplies all
Conversion
instances via
BigDecimal.multiply(BigDecimal)
.
- Conversion.Pow - Class in ome.model.units
-
Exponentiates two
Conversion
instances via
BigDecimal.pow(int)
.
- Conversion.Rat - Class in ome.model.units
-
Divides two
Conversion
instances via
BigDecimal.divide(BigDecimal, MathContext)
.
- Conversion.Sym - Class in ome.model.units
-
- conversions - Variable in class ome.model.units.Conversion
-
Conversions, if any, which are passed into the constructor
of this instance.
- convert(double) - Method in class ome.model.units.Conversion.Add
-
- convert(double) - Method in class ome.model.units.Conversion
-
- convert(double) - Method in class ome.model.units.Conversion.Int
-
Returns a BigDecimal
representation of this int.
- convert(double) - Method in class ome.model.units.Conversion.Mul
-
- convert(double) - Method in class ome.model.units.Conversion.Pow
-
- convert(double) - Method in class ome.model.units.Conversion.Rat
-
- convert(double) - Method in class ome.model.units.Conversion.Sym
-
- convertElectricPotential(ElectricPotential) - Static method in class ome.model.units.ElectricPotential
-
FIXME: this should likely take a default so that locations which don't
want an exception can have
log.warn("Using new PositiveFloat(1.0)!", e); return new
PositiveFloat(1.0);
or similar.
- convertElectricPotential(ElectricPotential, Unit<ElectricPotential>) - Static method in class ome.model.units.ElectricPotential
-
- convertElectricPotential(ElectricPotential, String) - Static method in class ome.model.units.ElectricPotential
-
- convertFrequency(Frequency) - Static method in class ome.model.units.Frequency
-
FIXME: this should likely take a default so that locations which don't
want an exception can have
log.warn("Using new PositiveFloat(1.0)!", e); return new
PositiveFloat(1.0);
or similar.
- convertFrequency(Frequency, Unit<Frequency>) - Static method in class ome.model.units.Frequency
-
- convertFrequency(Frequency, String) - Static method in class ome.model.units.Frequency
-
- convertLength(Length) - Static method in class ome.model.units.Length
-
FIXME: this should likely take a default so that locations which don't
want an exception can have
log.warn("Using new PositiveFloat(1.0)!", e); return new
PositiveFloat(1.0);
or similar.
- convertLength(Length, Unit<Length>) - Static method in class ome.model.units.Length
-
- convertLength(Length, String) - Static method in class ome.model.units.Length
-
- convertPower(Power) - Static method in class ome.model.units.Power
-
FIXME: this should likely take a default so that locations which don't
want an exception can have
log.warn("Using new PositiveFloat(1.0)!", e); return new
PositiveFloat(1.0);
or similar.
- convertPower(Power, Unit<Power>) - Static method in class ome.model.units.Power
-
- convertPower(Power, String) - Static method in class ome.model.units.Power
-
- convertPressure(Pressure) - Static method in class ome.model.units.Pressure
-
FIXME: this should likely take a default so that locations which don't
want an exception can have
log.warn("Using new PositiveFloat(1.0)!", e); return new
PositiveFloat(1.0);
or similar.
- convertPressure(Pressure, Unit<Pressure>) - Static method in class ome.model.units.Pressure
-
- convertPressure(Pressure, String) - Static method in class ome.model.units.Pressure
-
- convertTemperature(Temperature) - Static method in class ome.model.units.Temperature
-
FIXME: this should likely take a default so that locations which don't
want an exception can have
log.warn("Using new PositiveFloat(1.0)!", e); return new
PositiveFloat(1.0);
or similar.
- convertTemperature(Temperature, Unit<Temperature>) - Static method in class ome.model.units.Temperature
-
- convertTemperature(Temperature, String) - Static method in class ome.model.units.Temperature
-
- convertTime(Time) - Static method in class ome.model.units.Time
-
FIXME: this should likely take a default so that locations which don't
want an exception can have
log.warn("Using new PositiveFloat(1.0)!", e); return new
PositiveFloat(1.0);
or similar.
- convertTime(Time, Unit<Time>) - Static method in class ome.model.units.Time
-
- convertTime(Time, String) - Static method in class ome.model.units.Time
-
- copy() - Method in class ome.model.internal.Details
-
- copy(Details) - Method in class ome.model.internal.Details
-
Method which takes all field values from the given
Details
instance and copies them into the current instance.
- copy(T) - Method in class ome.util.ShallowCopy
-
- copyExtendedRestrictions() - Method in class ome.model.internal.Permissions
-
Produce a copy of restrictions for use elsewhere.
- copyObject(Filterable, ModelMapper) - Method in interface ome.model.ModelBased
-
- copyRestrictions() - Method in class ome.model.internal.Permissions
-
Deprecated.
- copyRestrictions(String[]) - Method in class ome.model.internal.Permissions
-
Safely copy the source array.
- copyRestrictions(boolean[], String[]) - Method in class ome.model.internal.Permissions
-
Deprecated.
- copyRestrictions(int, Set<String>) - Method in class ome.model.internal.Permissions
-
Copy restrictions based on the integer returned by BasicACLVoter.
- copyWhereUnset(Details, Details) - Method in class ome.model.internal.Details
-
For any field of this which is null (and is NOT null on mask -- assuming
mask is not null), copy the same value from copyFrom
into this object.
- correction - Variable in class ome.model.acquisition.Objective
-
- CORRECTION - Static variable in class ome.model.acquisition.Objective
-
- Correction - Class in ome.model.enums
-
- Correction() - Constructor for class ome.model.enums.Correction
-
- Correction(Long) - Constructor for class ome.model.enums.Correction
-
- Correction(Long, boolean) - Constructor for class ome.model.enums.Correction
-
Main constructor.
- Correction(String) - Constructor for class ome.model.enums.Correction
-
- Correction.Details - Class in ome.model.enums
-
- correctionCollar - Variable in class ome.model.acquisition.ObjectiveSettings
-
- CORRECTIONCOLLAR - Static variable in class ome.model.acquisition.ObjectiveSettings
-
- CountCollectionPersister - Class in ome.util
-
CollectionPersister
which knows how to handle the count views
generated by dsl/resources/ome/dsl/views.dm.
- CountCollectionPersister(Collection, CollectionRegionAccessStrategy, Configuration, SessionFactoryImplementor) - Constructor for class ome.util.CountCollectionPersister
-
- Counter - Class in ome.util
-
A simple integral counter that can be incremented.
- Counter() - Constructor for class ome.util.Counter
-
Create a new counter starting at zero.
- countFormat(String) - Method in class ome.util.actions.PostgresSqlAction
-
- countFormat(String) - Method in interface ome.util.SqlAction
-
- create() - Static method in class ome.model.internal.Details
-
- create(Object[]) - Static method in class ome.model.internal.Details
-
Factory method which returns a
Details
implementation for passing
in API calls, but cannot be stored within an
IObject
instance.
- createBufferedImage(int[], int, int) - Static method in class ome.util.ImageUtil
-
Creates a buffered image from a rendering engine RGB buffer without data
copying.
- createIdsTempTable(Collection<Long>) - Method in interface ome.util.SqlAction
-
Creates a temporary table filled with the given ids and returns its
name.
- createIdsTempTable(Collection<Long>) - Method in class ome.util.SqlAction.Impl
-
- createInsertTrigger(String, String, String) - Method in interface ome.util.SqlAction
-
Creates an insert trigger of the given name, for the given table,
with the given procedure.
- createInsertTrigger(String, String, String) - Method in class ome.util.SqlAction.Impl
-
- createSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction
-
- createSavepoint(String) - Method in interface ome.util.SqlAction
-
- CREATIONEVENT - Static variable in class ome.model.internal.Details
-
- ctime - Variable in class ome.model.core.OriginalFile
-
- CTIME - Static variable in class ome.model.core.OriginalFile
-
- currentContext() - Method in class ome.util.ContextFilter
-
- currentPatch - Variable in class ome.model.meta.DBPatch
-
- CURRENTPATCH - Static variable in class ome.model.meta.DBPatch
-
- currentUserNames() - Method in class ome.util.actions.PostgresSqlAction
-
- currentUserNames() - Method in interface ome.util.SqlAction
-
- currentVersion - Variable in class ome.model.meta.DBPatch
-
- CURRENTVERSION - Static variable in class ome.model.meta.DBPatch
-
- currValue(String) - Method in class ome.util.actions.PostgresSqlAction
-
- currValue(String) - Method in interface ome.util.SqlAction
-
- cutIn - Variable in class ome.model.acquisition.TransmittanceRange
-
- CUTIN - Static variable in class ome.model.acquisition.TransmittanceRange
-
- cutInTolerance - Variable in class ome.model.acquisition.TransmittanceRange
-
- CUTINTOLERANCE - Static variable in class ome.model.acquisition.TransmittanceRange
-
- cutOut - Variable in class ome.model.acquisition.TransmittanceRange
-
- CUTOUT - Static variable in class ome.model.acquisition.TransmittanceRange
-
- cutOutTolerance - Variable in class ome.model.acquisition.TransmittanceRange
-
- CUTOUTTOLERANCE - Static variable in class ome.model.acquisition.TransmittanceRange
-
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Detector
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Dichroic
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Filter
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Instrument
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.LightPath
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.LightSource
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Objective
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.annotations.Annotation
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Dataset
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Folder
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Project
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.Channel
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.Image
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.OriginalFile
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.PlaneInfo
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.fs.Fileset
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in interface ome.model.IAnnotated
-
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Experimenter
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Namespace
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Node
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Session
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.roi.Roi
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.roi.Shape
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Plate
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Reagent
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Screen
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Well
-
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while
collecting the results.
- eachLinkedDataset(CBlock<E>) - Method in class ome.model.containers.Project
-
takes a CBlock and calls the block once for each ome.model.containers.Dataset while
collecting the results.
- eachLinkedDataset(CBlock<E>) - Method in class ome.model.core.Image
-
takes a CBlock and calls the block once for each ome.model.containers.Dataset while
collecting the results.
- eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.Filter
-
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while
collecting the results.
- eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
-
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while
collecting the results.
- eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.LightPath
-
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while
collecting the results.
- eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.Filter
-
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while
collecting the results.
- eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
-
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while
collecting the results.
- eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.LightPath
-
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while
collecting the results.
- eachLinkedExperimenter(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
-
takes a CBlock and calls the block once for each ome.model.meta.Experimenter while
collecting the results.
- eachLinkedExperimenterGroup(CBlock<E>) - Method in class ome.model.meta.Experimenter
-
takes a CBlock and calls the block once for each ome.model.meta.ExperimenterGroup while
collecting the results.
- eachLinkedFolder(CBlock<E>) - Method in class ome.model.core.Image
-
takes a CBlock and calls the block once for each ome.model.containers.Folder while
collecting the results.
- eachLinkedFolder(CBlock<E>) - Method in class ome.model.roi.Roi
-
takes a CBlock and calls the block once for each ome.model.containers.Folder while
collecting the results.
- eachLinkedImage(CBlock<E>) - Method in class ome.model.containers.Dataset
-
takes a CBlock and calls the block once for each ome.model.core.Image while
collecting the results.
- eachLinkedImage(CBlock<E>) - Method in class ome.model.containers.Folder
-
takes a CBlock and calls the block once for each ome.model.core.Image while
collecting the results.
- eachLinkedJob(CBlock<E>) - Method in class ome.model.fs.Fileset
-
takes a CBlock and calls the block once for each ome.model.jobs.Job while
collecting the results.
- eachLinkedOriginalFile(CBlock<E>) - Method in class ome.model.core.Pixels
-
takes a CBlock and calls the block once for each ome.model.core.OriginalFile while
collecting the results.
- eachLinkedOriginalFile(CBlock<E>) - Method in class ome.model.jobs.Job
-
takes a CBlock and calls the block once for each ome.model.core.OriginalFile while
collecting the results.
- eachLinkedPixels(CBlock<E>) - Method in class ome.model.core.OriginalFile
-
takes a CBlock and calls the block once for each ome.model.core.Pixels while
collecting the results.
- eachLinkedPlate(CBlock<E>) - Method in class ome.model.screen.Screen
-
takes a CBlock and calls the block once for each ome.model.screen.Plate while
collecting the results.
- eachLinkedProject(CBlock<E>) - Method in class ome.model.containers.Dataset
-
takes a CBlock and calls the block once for each ome.model.containers.Project while
collecting the results.
- eachLinkedReagent(CBlock<E>) - Method in class ome.model.screen.Well
-
takes a CBlock and calls the block once for each ome.model.screen.Reagent while
collecting the results.
- eachLinkedRoi(CBlock<E>) - Method in class ome.model.containers.Folder
-
takes a CBlock and calls the block once for each ome.model.roi.Roi while
collecting the results.
- eachLinkedScreen(CBlock<E>) - Method in class ome.model.screen.Plate
-
takes a CBlock and calls the block once for each ome.model.screen.Screen while
collecting the results.
- eachLinkedWell(CBlock<E>) - Method in class ome.model.screen.Reagent
-
takes a CBlock and calls the block once for each ome.model.screen.Well while
collecting the results.
- EDITRESTRICTION - Static variable in class ome.model.internal.Permissions
-
- ElectricPotential - Class in ome.model.units
-
class storing both a ElectricPotential and a unit for that ElectricPotential
(e.g.
- ElectricPotential() - Constructor for class ome.model.units.ElectricPotential
-
Deprecated.
- ElectricPotential(double, String) - Constructor for class ome.model.units.ElectricPotential
-
- ElectricPotential(double, UnitsElectricPotential) - Constructor for class ome.model.units.ElectricPotential
-
- ElectricPotential(double, Unit<ElectricPotential>) - Constructor for class ome.model.units.ElectricPotential
-
- ElectricPotential(ElectricPotential) - Constructor for class ome.model.units.ElectricPotential
-
- Ellipse - Class in ome.model.roi
-
- Ellipse() - Constructor for class ome.model.roi.Ellipse
-
- Ellipse(Long) - Constructor for class ome.model.roi.Ellipse
-
- Ellipse(Long, boolean) - Constructor for class ome.model.roi.Ellipse
-
Main constructor.
- email - Variable in class ome.model.meta.Experimenter
-
- EMAIL - Static variable in class ome.model.meta.Experimenter
-
- emissionFilterLink - Variable in class ome.model.acquisition.Filter
-
- EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
-
- emissionFilterLink - Variable in class ome.model.acquisition.FilterSet
-
- EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
-
- emissionFilterLink - Variable in class ome.model.acquisition.LightPath
-
- EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
-
- EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
-
- EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.FilterSet
-
- EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
-
- emissionWave - Variable in class ome.model.core.LogicalChannel
-
- EMISSIONWAVE - Static variable in class ome.model.core.LogicalChannel
-
- EMPTY - Static variable in class ome.model.internal.Permissions
-
- EmptyIterator<E> - Class in ome.util
-
utility iterator which does nothing as quickly as possible.
- EmptyIterator() - Constructor for class ome.util.EmptyIterator
-
- endPlane - Variable in class ome.model.display.ProjectionDef
-
- ENDPLANE - Static variable in class ome.model.display.ProjectionDef
-
- endTime - Variable in class ome.model.screen.PlateAcquisition
-
- ENDTIME - Static variable in class ome.model.screen.PlateAcquisition
-
- endTime - Variable in class ome.parameters.Filter
-
- endTime(Timestamp) - Method in class ome.parameters.Parameters
-
- enter(Object) - Method in class ome.util.ContextFilter
-
- entityId - Variable in class ome.model.meta.EventLog
-
- ENTITYID - Static variable in class ome.model.meta.EventLog
-
- entityId - Variable in class ome.model.meta.ExternalInfo
-
- ENTITYID - Static variable in class ome.model.meta.ExternalInfo
-
- entityType - Variable in class ome.model.meta.EventLog
-
- ENTITYTYPE - Static variable in class ome.model.meta.EventLog
-
- entityType - Variable in class ome.model.meta.ExternalInfo
-
- ENTITYTYPE - Static variable in class ome.model.meta.ExternalInfo
-
- entry(String, Object) - Method in class ome.util.RdfPrinter
-
- equals(Object) - Method in class ome.model.enums.AcquisitionMode
-
- equals(Object) - Method in class ome.model.enums.AdminPrivilege
-
- equals(Object) - Method in class ome.model.enums.ArcType
-
- equals(Object) - Method in class ome.model.enums.Binning
-
- equals(Object) - Method in class ome.model.enums.ChecksumAlgorithm
-
- equals(Object) - Method in class ome.model.enums.ContrastMethod
-
- equals(Object) - Method in class ome.model.enums.Correction
-
- equals(Object) - Method in class ome.model.enums.DetectorType
-
- equals(Object) - Method in class ome.model.enums.DimensionOrder
-
- equals(Object) - Method in class ome.model.enums.EventType
-
- equals(Object) - Method in class ome.model.enums.ExperimentType
-
- equals(Object) - Method in class ome.model.enums.Family
-
- equals(Object) - Method in class ome.model.enums.FilamentType
-
- equals(Object) - Method in class ome.model.enums.FilterType
-
- equals(Object) - Method in class ome.model.enums.Format
-
- equals(Object) - Method in class ome.model.enums.Illumination
-
- equals(Object) - Method in class ome.model.enums.Immersion
-
- equals(Object) - Method in class ome.model.enums.LaserMedium
-
- equals(Object) - Method in class ome.model.enums.LaserType
-
- equals(Object) - Method in class ome.model.enums.Medium
-
- equals(Object) - Method in class ome.model.enums.MicrobeamManipulationType
-
- equals(Object) - Method in class ome.model.enums.MicroscopeType
-
- equals(Object) - Method in class ome.model.enums.PhotometricInterpretation
-
- equals(Object) - Method in class ome.model.enums.PixelsType
-
- equals(Object) - Method in class ome.model.enums.ProjectionAxis
-
- equals(Object) - Method in class ome.model.enums.ProjectionType
-
- equals(Object) - Method in class ome.model.enums.Pulse
-
- equals(Object) - Method in class ome.model.enums.RenderingModel
-
- equals(Object) - Method in class ome.model.internal.NamedValue
-
- equals(Object) - Method in class ome.model.jobs.JobStatus
-
- equals(Object) - Method in class ome.model.units.ElectricPotential
-
- equals(Object) - Method in class ome.model.units.Frequency
-
- equals(Object, Object) - Method in class ome.model.units.GenericEnumType
-
- equals(Object) - Method in class ome.model.units.Length
-
- equals(Object) - Method in class ome.model.units.Power
-
- equals(Object) - Method in class ome.model.units.Pressure
-
- equals(Object) - Method in class ome.model.units.Temperature
-
- equals(Object) - Method in class ome.model.units.Time
-
- equals(Object) - Method in class ome.parameters.QueryParameter
-
- equals(Object) - Method in class ome.util.LSID
-
- errorIfUnloaded() - Method in class ome.model.acquisition.Detector
-
- errorIfUnloaded() - Method in class ome.model.acquisition.DetectorSettings
-
- errorIfUnloaded() - Method in class ome.model.acquisition.Dichroic
-
- errorIfUnloaded() - Method in class ome.model.acquisition.Filter
-
- errorIfUnloaded() - Method in class ome.model.acquisition.FilterSet
-
- errorIfUnloaded() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
-
- errorIfUnloaded() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
-
- errorIfUnloaded() - Method in class ome.model.acquisition.ImagingEnvironment
-
- errorIfUnloaded() - Method in class ome.model.acquisition.Instrument
-
- errorIfUnloaded() - Method in class ome.model.acquisition.LightPath
-
- errorIfUnloaded() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
-
- errorIfUnloaded() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
-
- errorIfUnloaded() - Method in class ome.model.acquisition.LightSettings
-
- errorIfUnloaded() - Method in class ome.model.acquisition.LightSource
-
- errorIfUnloaded() - Method in class ome.model.acquisition.Microscope
-
- errorIfUnloaded() - Method in class ome.model.acquisition.Objective
-
- errorIfUnloaded() - Method in class ome.model.acquisition.ObjectiveSettings
-
- errorIfUnloaded() - Method in class ome.model.acquisition.OTF
-
- errorIfUnloaded() - Method in class ome.model.acquisition.StageLabel
-
- errorIfUnloaded() - Method in class ome.model.acquisition.TransmittanceRange
-
- errorIfUnloaded() - Method in class ome.model.annotations.Annotation
-
- errorIfUnloaded() - Method in class ome.model.annotations.AnnotationAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.ChannelAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.DatasetAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.DetectorAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.DichroicAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.ExperimenterAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.FilesetAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.FilterAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.FolderAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.ImageAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.InstrumentAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.LightPathAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.LightSourceAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.NamespaceAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.NodeAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.ObjectiveAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.OriginalFileAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.PlateAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.ProjectAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.ReagentAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.RoiAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.ScreenAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.SessionAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.ShapeAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.annotations.WellAnnotationLink
-
- errorIfUnloaded() - Method in class ome.model.containers.Dataset
-
- errorIfUnloaded() - Method in class ome.model.containers.DatasetImageLink
-
- errorIfUnloaded() - Method in class ome.model.containers.Folder
-
- errorIfUnloaded() - Method in class ome.model.containers.FolderImageLink
-
- errorIfUnloaded() - Method in class ome.model.containers.FolderRoiLink
-
- errorIfUnloaded() - Method in class ome.model.containers.Project
-
- errorIfUnloaded() - Method in class ome.model.containers.ProjectDatasetLink
-
- errorIfUnloaded() - Method in class ome.model.core.Channel
-
- errorIfUnloaded() - Method in class ome.model.core.Image
-
- errorIfUnloaded() - Method in class ome.model.core.LogicalChannel
-
- errorIfUnloaded() - Method in class ome.model.core.OriginalFile
-
- errorIfUnloaded() - Method in class ome.model.core.Pixels
-
- errorIfUnloaded() - Method in class ome.model.core.PixelsOriginalFileMap
-
- errorIfUnloaded() - Method in class ome.model.core.PlaneInfo
-
- errorIfUnloaded() - Method in class ome.model.display.ChannelBinding
-
- errorIfUnloaded() - Method in class ome.model.display.CodomainMapContext
-
- errorIfUnloaded() - Method in class ome.model.display.ProjectionDef
-
- errorIfUnloaded() - Method in class ome.model.display.QuantumDef
-
- errorIfUnloaded() - Method in class ome.model.display.RenderingDef
-
- errorIfUnloaded() - Method in class ome.model.display.Thumbnail
-
- errorIfUnloaded() - Method in class ome.model.enums.AcquisitionMode
-
- errorIfUnloaded() - Method in class ome.model.enums.AdminPrivilege
-
- errorIfUnloaded() - Method in class ome.model.enums.ArcType
-
- errorIfUnloaded() - Method in class ome.model.enums.Binning
-
- errorIfUnloaded() - Method in class ome.model.enums.ChecksumAlgorithm
-
- errorIfUnloaded() - Method in class ome.model.enums.ContrastMethod
-
- errorIfUnloaded() - Method in class ome.model.enums.Correction
-
- errorIfUnloaded() - Method in class ome.model.enums.DetectorType
-
- errorIfUnloaded() - Method in class ome.model.enums.DimensionOrder
-
- errorIfUnloaded() - Method in class ome.model.enums.EventType
-
- errorIfUnloaded() - Method in class ome.model.enums.ExperimentType
-
- errorIfUnloaded() - Method in class ome.model.enums.Family
-
- errorIfUnloaded() - Method in class ome.model.enums.FilamentType
-
- errorIfUnloaded() - Method in class ome.model.enums.FilterType
-
- errorIfUnloaded() - Method in class ome.model.enums.Format
-
- errorIfUnloaded() - Method in class ome.model.enums.Illumination
-
- errorIfUnloaded() - Method in class ome.model.enums.Immersion
-
- errorIfUnloaded() - Method in class ome.model.enums.LaserMedium
-
- errorIfUnloaded() - Method in class ome.model.enums.LaserType
-
- errorIfUnloaded() - Method in class ome.model.enums.Medium
-
- errorIfUnloaded() - Method in class ome.model.enums.MicrobeamManipulationType
-
- errorIfUnloaded() - Method in class ome.model.enums.MicroscopeType
-
- errorIfUnloaded() - Method in class ome.model.enums.PhotometricInterpretation
-
- errorIfUnloaded() - Method in class ome.model.enums.PixelsType
-
- errorIfUnloaded() - Method in class ome.model.enums.ProjectionAxis
-
- errorIfUnloaded() - Method in class ome.model.enums.ProjectionType
-
- errorIfUnloaded() - Method in class ome.model.enums.Pulse
-
- errorIfUnloaded() - Method in class ome.model.enums.RenderingModel
-
- errorIfUnloaded() - Method in class ome.model.experiment.Experiment
-
- errorIfUnloaded() - Method in class ome.model.experiment.MicrobeamManipulation
-
- errorIfUnloaded() - Method in class ome.model.fs.Fileset
-
- errorIfUnloaded() - Method in class ome.model.fs.FilesetEntry
-
- errorIfUnloaded() - Method in class ome.model.fs.FilesetJobLink
-
- errorIfUnloaded() - Method in class ome.model.internal.Link
-
- errorIfUnloaded() - Method in class ome.model.jobs.Job
-
- errorIfUnloaded() - Method in class ome.model.jobs.JobOriginalFileLink
-
- errorIfUnloaded() - Method in class ome.model.jobs.JobStatus
-
- errorIfUnloaded() - Method in class ome.model.meta.DBPatch
-
- errorIfUnloaded() - Method in class ome.model.meta.Event
-
- errorIfUnloaded() - Method in class ome.model.meta.EventLog
-
- errorIfUnloaded() - Method in class ome.model.meta.Experimenter
-
- errorIfUnloaded() - Method in class ome.model.meta.ExperimenterGroup
-
- errorIfUnloaded() - Method in class ome.model.meta.ExternalInfo
-
- errorIfUnloaded() - Method in class ome.model.meta.GroupExperimenterMap
-
- errorIfUnloaded() - Method in class ome.model.meta.Namespace
-
- errorIfUnloaded() - Method in class ome.model.meta.Node
-
- errorIfUnloaded() - Method in class ome.model.meta.Session
-
- errorIfUnloaded() - Method in class ome.model.meta.ShareMember
-
- errorIfUnloaded() - Method in class ome.model.roi.AffineTransform
-
- errorIfUnloaded() - Method in class ome.model.roi.Roi
-
- errorIfUnloaded() - Method in class ome.model.roi.Shape
-
- errorIfUnloaded() - Method in class ome.model.screen.Plate
-
- errorIfUnloaded() - Method in class ome.model.screen.PlateAcquisition
-
- errorIfUnloaded() - Method in class ome.model.screen.Reagent
-
- errorIfUnloaded() - Method in class ome.model.screen.Screen
-
- errorIfUnloaded() - Method in class ome.model.screen.ScreenPlateLink
-
- errorIfUnloaded() - Method in class ome.model.screen.Well
-
- errorIfUnloaded() - Method in class ome.model.screen.WellReagentLink
-
- errorIfUnloaded() - Method in class ome.model.screen.WellSample
-
- errorIfUnloaded() - Method in class ome.model.stats.StatsInfo
-
- Event - Class in ome.model.meta
-
- Event() - Constructor for class ome.model.meta.Event
-
- Event(Long) - Constructor for class ome.model.meta.Event
-
- Event(Long, boolean) - Constructor for class ome.model.meta.Event
-
Main constructor.
- Event(Timestamp, Experimenter, ExperimenterGroup, EventType, Session) - Constructor for class ome.model.meta.Event
-
- event - Variable in class ome.model.meta.EventLog
-
- EVENT - Static variable in class ome.model.meta.EventLog
-
- Event.Details - Class in ome.model.meta
-
- event2timestamp(Event) - Method in class ome.util.ModelMapper
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.Arc
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.Detector
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.DetectorSettings
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.Dichroic
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.Filament
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.Filter
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSet
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.Instrument
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.Laser
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.LightPath
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.LightSettings
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.LightSource
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.Microscope
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.Objective
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.OTF
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.StageLabel
-
- EVENT_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange
-
- EVENT_FILTER - Static variable in class ome.model.annotations.Annotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.BasicAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.CommentAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.FileAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.ListAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.LongAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.MapAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.NumericAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.TagAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.TermAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.TextAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.TypeAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink
-
- EVENT_FILTER - Static variable in class ome.model.annotations.XmlAnnotation
-
- EVENT_FILTER - Static variable in class ome.model.containers.Dataset
-
- EVENT_FILTER - Static variable in class ome.model.containers.DatasetImageLink
-
- EVENT_FILTER - Static variable in class ome.model.containers.Folder
-
- EVENT_FILTER - Static variable in class ome.model.containers.FolderImageLink
-
- EVENT_FILTER - Static variable in class ome.model.containers.FolderRoiLink
-
- EVENT_FILTER - Static variable in class ome.model.containers.Project
-
- EVENT_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink
-
- EVENT_FILTER - Static variable in class ome.model.core.Channel
-
- EVENT_FILTER - Static variable in class ome.model.core.Image
-
- EVENT_FILTER - Static variable in class ome.model.core.LogicalChannel
-
- EVENT_FILTER - Static variable in class ome.model.core.OriginalFile
-
- EVENT_FILTER - Static variable in class ome.model.core.Pixels
-
- EVENT_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap
-
- EVENT_FILTER - Static variable in class ome.model.core.PlaneInfo
-
- EVENT_FILTER - Static variable in class ome.model.display.ChannelBinding
-
- EVENT_FILTER - Static variable in class ome.model.display.CodomainMapContext
-
- EVENT_FILTER - Static variable in class ome.model.display.ContrastStretchingContext
-
- EVENT_FILTER - Static variable in class ome.model.display.PlaneSlicingContext
-
- EVENT_FILTER - Static variable in class ome.model.display.ProjectionDef
-
- EVENT_FILTER - Static variable in class ome.model.display.QuantumDef
-
- EVENT_FILTER - Static variable in class ome.model.display.RenderingDef
-
- EVENT_FILTER - Static variable in class ome.model.display.ReverseIntensityContext
-
- EVENT_FILTER - Static variable in class ome.model.display.Thumbnail
-
- EVENT_FILTER - Static variable in class ome.model.experiment.Experiment
-
- EVENT_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation
-
- EVENT_FILTER - Static variable in class ome.model.fs.Fileset
-
- EVENT_FILTER - Static variable in class ome.model.fs.FilesetEntry
-
- EVENT_FILTER - Static variable in class ome.model.fs.FilesetJobLink
-
- EVENT_FILTER - Static variable in class ome.model.internal.Link
-
- EVENT_FILTER - Static variable in class ome.model.jobs.ImportJob
-
Deprecated.
- EVENT_FILTER - Static variable in class ome.model.jobs.IndexingJob
-
- EVENT_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob
-
- EVENT_FILTER - Static variable in class ome.model.jobs.Job
-
- EVENT_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink
-
- EVENT_FILTER - Static variable in class ome.model.jobs.MetadataImportJob
-
- EVENT_FILTER - Static variable in class ome.model.jobs.ParseJob
-
- EVENT_FILTER - Static variable in class ome.model.jobs.PixelDataJob
-
- EVENT_FILTER - Static variable in class ome.model.jobs.ScriptJob
-
- EVENT_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob
-
- EVENT_FILTER - Static variable in class ome.model.jobs.UploadJob
-
- EVENT_FILTER - Static variable in class ome.model.meta.ExternalInfo
-
- EVENT_FILTER - Static variable in class ome.model.roi.AffineTransform
-
- EVENT_FILTER - Static variable in class ome.model.roi.Ellipse
-
- EVENT_FILTER - Static variable in class ome.model.roi.Label
-
- EVENT_FILTER - Static variable in class ome.model.roi.Line
-
- EVENT_FILTER - Static variable in class ome.model.roi.Mask
-
- EVENT_FILTER - Static variable in class ome.model.roi.Path
-
Deprecated.
- EVENT_FILTER - Static variable in class ome.model.roi.Point
-
- EVENT_FILTER - Static variable in class ome.model.roi.Polygon
-
- EVENT_FILTER - Static variable in class ome.model.roi.Polyline
-
- EVENT_FILTER - Static variable in class ome.model.roi.Rectangle
-
- EVENT_FILTER - Static variable in class ome.model.roi.Roi
-
- EVENT_FILTER - Static variable in class ome.model.roi.Shape
-
- EVENT_FILTER - Static variable in class ome.model.screen.Plate
-
- EVENT_FILTER - Static variable in class ome.model.screen.PlateAcquisition
-
- EVENT_FILTER - Static variable in class ome.model.screen.Reagent
-
- EVENT_FILTER - Static variable in class ome.model.screen.Screen
-
- EVENT_FILTER - Static variable in class ome.model.screen.ScreenPlateLink
-
- EVENT_FILTER - Static variable in class ome.model.screen.Well
-
- EVENT_FILTER - Static variable in class ome.model.screen.WellReagentLink
-
- EVENT_FILTER - Static variable in class ome.model.screen.WellSample
-
- EVENT_FILTER - Static variable in class ome.model.stats.StatsInfo
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
-
- EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
-
- EVENT_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel
-
- EVENT_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels
-
- EVENT_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder
-
- EVENT_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project
-
- EVENT_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image
-
- EVENT_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument
-
- EVENT_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument
-
- EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
-
- EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
-
- EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
-
- EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
-
- EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
-
- EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
-
- EVENT_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
-
- EVENT_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument
-
- EVENT_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument
-
- EVENT_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image
-
- EVENT_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi
-
- EVENT_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset
-
- EVENT_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder
-
- EVENT_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset
-
- EVENT_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset
-
- EVENT_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
-
- EVENT_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
-
- EVENT_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
-
- EVENT_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
-
- EVENT_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
-
- EVENT_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument
-
- EVENT_FILTER_PIXELS - Static variable in class ome.model.core.Image
-
- EVENT_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
-
- EVENT_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
-
- EVENT_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels
-
- EVENT_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
-
- EVENT_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen
-
- EVENT_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef
-
- EVENT_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset
-
- EVENT_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well
-
- EVENT_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen
-
- EVENT_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder
-
- EVENT_FILTER_ROIS - Static variable in class ome.model.core.Image
-
- EVENT_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate
-
- EVENT_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels
-
- EVENT_FILTER_SHAPES - Static variable in class ome.model.roi.Roi
-
- EVENT_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
-
- EVENT_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels
-
- EVENT_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset
-
- EVENT_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef
-
- EVENT_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent
-
- EVENT_FILTER_WELLS - Static variable in class ome.model.screen.Plate
-
- EVENT_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
-
- EVENT_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image
-
- EVENT_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well
-
- eventId - Variable in class ome.util.SqlAction.DeleteLog
-
- EventLog - Class in ome.model.meta
-
- EventLog() - Constructor for class ome.model.meta.EventLog
-
- EventLog(Long) - Constructor for class ome.model.meta.EventLog
-
- EventLog(Long, boolean) - Constructor for class ome.model.meta.EventLog
-
Main constructor.
- EventLog(Long, String, String, Event) - Constructor for class ome.model.meta.EventLog
-
- EventLog.Details - Class in ome.model.meta
-
- events - Variable in class ome.model.meta.Session
-
- EVENTS - Static variable in class ome.model.meta.Session
-
- EventType - Class in ome.model.enums
-
- EventType() - Constructor for class ome.model.enums.EventType
-
- EventType(Long) - Constructor for class ome.model.enums.EventType
-
- EventType(Long, boolean) - Constructor for class ome.model.enums.EventType
-
Main constructor.
- EventType(String) - Constructor for class ome.model.enums.EventType
-
- EventType.Details - Class in ome.model.enums
-
- excitationFilterLink - Variable in class ome.model.acquisition.Filter
-
- EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
-
- excitationFilterLink - Variable in class ome.model.acquisition.FilterSet
-
- EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
-
- excitationFilterLink - Variable in class ome.model.acquisition.LightPath
-
- EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
-
- EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
-
- EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.FilterSet
-
- EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
-
- excitationWave - Variable in class ome.model.core.LogicalChannel
-
- EXCITATIONWAVE - Static variable in class ome.model.core.LogicalChannel
-
- exit(Object) - Method in class ome.util.ContextFilter
-
- exp(long) - Method in class ome.parameters.Parameters
-
- experiment - Variable in class ome.model.core.Image
-
- EXPERIMENT - Static variable in class ome.model.core.Image
-
- Experiment - Class in ome.model.experiment
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- Experiment() - Constructor for class ome.model.experiment.Experiment
-
- Experiment(Long) - Constructor for class ome.model.experiment.Experiment
-
- Experiment(Long, boolean) - Constructor for class ome.model.experiment.Experiment
-
Main constructor.
- Experiment(ExperimentType) - Constructor for class ome.model.experiment.Experiment
-
- experiment - Variable in class ome.model.experiment.MicrobeamManipulation
-
- EXPERIMENT - Static variable in class ome.model.experiment.MicrobeamManipulation
-
- Experiment.Details - Class in ome.model.experiment
-
- experimenter - Variable in class ome.model.meta.Event
-
- EXPERIMENTER - Static variable in class ome.model.meta.Event
-
- Experimenter - Class in ome.model.meta
-
- Experimenter() - Constructor for class ome.model.meta.Experimenter
-
- Experimenter(Long) - Constructor for class ome.model.meta.Experimenter
-
- Experimenter(Long, boolean) - Constructor for class ome.model.meta.Experimenter
-
Main constructor.
- Experimenter(String, String, String, Boolean) - Constructor for class ome.model.meta.Experimenter
-
- Experimenter.Details - Class in ome.model.meta
-
- ExperimenterAnnotationLink - Class in ome.model.annotations
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- ExperimenterAnnotationLink() - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
-
- ExperimenterAnnotationLink(Long) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
-
- ExperimenterAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
-
Main constructor.
- ExperimenterAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
-
- ExperimenterAnnotationLink.Details - Class in ome.model.annotations
-
- experimenterGroup - Variable in class ome.model.meta.Event
-
- EXPERIMENTERGROUP - Static variable in class ome.model.meta.Event
-
- ExperimenterGroup - Class in ome.model.meta
-
- ExperimenterGroup() - Constructor for class ome.model.meta.ExperimenterGroup
-
- ExperimenterGroup(Long) - Constructor for class ome.model.meta.ExperimenterGroup
-
- ExperimenterGroup(Long, boolean) - Constructor for class ome.model.meta.ExperimenterGroup
-
Main constructor.
- ExperimenterGroup(String, Boolean) - Constructor for class ome.model.meta.ExperimenterGroup
-
- ExperimenterGroup.Details - Class in ome.model.meta
-
- ExperimenterGroupAnnotationLink - Class in ome.model.annotations
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- ExperimenterGroupAnnotationLink() - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- ExperimenterGroupAnnotationLink(Long) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- ExperimenterGroupAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
-
Main constructor.
- ExperimenterGroupAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- ExperimenterGroupAnnotationLink.Details - Class in ome.model.annotations
-
- ExperimentType - Class in ome.model.enums
-
- ExperimentType() - Constructor for class ome.model.enums.ExperimentType
-
- ExperimentType(Long) - Constructor for class ome.model.enums.ExperimentType
-
- ExperimentType(Long, boolean) - Constructor for class ome.model.enums.ExperimentType
-
Main constructor.
- ExperimentType(String) - Constructor for class ome.model.enums.ExperimentType
-
- ExperimentType.Details - Class in ome.model.enums
-
- ExpiredCredentialException - Exception in ome.conditions
-
Correct username and credentials provided, but credentials expired.
- ExpiredCredentialException(String) - Constructor for exception ome.conditions.ExpiredCredentialException
-
- exposureTime - Variable in class ome.model.core.PlaneInfo
-
- EXPOSURETIME - Static variable in class ome.model.core.PlaneInfo
-
- externalDescription - Variable in class ome.model.screen.Well
-
- EXTERNALDESCRIPTION - Static variable in class ome.model.screen.Well
-
- externalIdentifier - Variable in class ome.model.screen.Plate
-
- EXTERNALIDENTIFIER - Static variable in class ome.model.screen.Plate
-
- externalIdentifier - Variable in class ome.model.screen.Well
-
- EXTERNALIDENTIFIER - Static variable in class ome.model.screen.Well
-
- EXTERNALINFO - Static variable in class ome.model.internal.Details
-
- ExternalInfo - Class in ome.model.meta
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- ExternalInfo() - Constructor for class ome.model.meta.ExternalInfo
-
- ExternalInfo(Long) - Constructor for class ome.model.meta.ExternalInfo
-
- ExternalInfo(Long, boolean) - Constructor for class ome.model.meta.ExternalInfo
-
Main constructor.
- ExternalInfo(Long, String) - Constructor for class ome.model.meta.ExternalInfo
-
- ExternalInfo.Details - Class in ome.model.meta
-
- family - Variable in class ome.model.display.ChannelBinding
-
- FAMILY - Static variable in class ome.model.display.ChannelBinding
-
- Family - Class in ome.model.enums
-
- Family() - Constructor for class ome.model.enums.Family
-
- Family(Long) - Constructor for class ome.model.enums.Family
-
- Family(Long, boolean) - Constructor for class ome.model.enums.Family
-
Main constructor.
- Family(String) - Constructor for class ome.model.enums.Family
-
- Family.Details - Class in ome.model.enums
-
- FIELDS - Static variable in class ome.model.acquisition.Arc
-
- fields() - Method in class ome.model.acquisition.Arc
-
- FIELDS - Static variable in class ome.model.acquisition.Detector
-
- fields() - Method in class ome.model.acquisition.Detector
-
- FIELDS - Static variable in class ome.model.acquisition.DetectorSettings
-
- fields() - Method in class ome.model.acquisition.DetectorSettings
-
- FIELDS - Static variable in class ome.model.acquisition.Dichroic
-
- fields() - Method in class ome.model.acquisition.Dichroic
-
- FIELDS - Static variable in class ome.model.acquisition.Filament
-
- fields() - Method in class ome.model.acquisition.Filament
-
- FIELDS - Static variable in class ome.model.acquisition.Filter
-
- fields() - Method in class ome.model.acquisition.Filter
-
- FIELDS - Static variable in class ome.model.acquisition.FilterSet
-
- fields() - Method in class ome.model.acquisition.FilterSet
-
- FIELDS - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
-
- fields() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
-
- FIELDS - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
-
- fields() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
-
- FIELDS - Static variable in class ome.model.acquisition.GenericExcitationSource
-
- fields() - Method in class ome.model.acquisition.GenericExcitationSource
-
- FIELDS - Static variable in class ome.model.acquisition.ImagingEnvironment
-
- fields() - Method in class ome.model.acquisition.ImagingEnvironment
-
- FIELDS - Static variable in class ome.model.acquisition.Instrument
-
- fields() - Method in class ome.model.acquisition.Instrument
-
- FIELDS - Static variable in class ome.model.acquisition.Laser
-
- fields() - Method in class ome.model.acquisition.Laser
-
- FIELDS - Static variable in class ome.model.acquisition.LightEmittingDiode
-
- fields() - Method in class ome.model.acquisition.LightEmittingDiode
-
- FIELDS - Static variable in class ome.model.acquisition.LightPath
-
- fields() - Method in class ome.model.acquisition.LightPath
-
- FIELDS - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
-
- fields() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
-
- FIELDS - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
-
- fields() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
-
- FIELDS - Static variable in class ome.model.acquisition.LightSettings
-
- fields() - Method in class ome.model.acquisition.LightSettings
-
- FIELDS - Static variable in class ome.model.acquisition.LightSource
-
- fields() - Method in class ome.model.acquisition.LightSource
-
- FIELDS - Static variable in class ome.model.acquisition.Microscope
-
- fields() - Method in class ome.model.acquisition.Microscope
-
- FIELDS - Static variable in class ome.model.acquisition.Objective
-
- fields() - Method in class ome.model.acquisition.Objective
-
- FIELDS - Static variable in class ome.model.acquisition.ObjectiveSettings
-
- fields() - Method in class ome.model.acquisition.ObjectiveSettings
-
- FIELDS - Static variable in class ome.model.acquisition.OTF
-
- fields() - Method in class ome.model.acquisition.OTF
-
- FIELDS - Static variable in class ome.model.acquisition.StageLabel
-
- fields() - Method in class ome.model.acquisition.StageLabel
-
- FIELDS - Static variable in class ome.model.acquisition.TransmittanceRange
-
- fields() - Method in class ome.model.acquisition.TransmittanceRange
-
- FIELDS - Static variable in class ome.model.annotations.Annotation
-
- fields() - Method in class ome.model.annotations.Annotation
-
- FIELDS - Static variable in class ome.model.annotations.AnnotationAnnotationLink
-
- fields() - Method in class ome.model.annotations.AnnotationAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.BasicAnnotation
-
- fields() - Method in class ome.model.annotations.BasicAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.BooleanAnnotation
-
- fields() - Method in class ome.model.annotations.BooleanAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.ChannelAnnotationLink
-
- fields() - Method in class ome.model.annotations.ChannelAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.CommentAnnotation
-
- fields() - Method in class ome.model.annotations.CommentAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.DatasetAnnotationLink
-
- fields() - Method in class ome.model.annotations.DatasetAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.DetectorAnnotationLink
-
- fields() - Method in class ome.model.annotations.DetectorAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.DichroicAnnotationLink
-
- fields() - Method in class ome.model.annotations.DichroicAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.DoubleAnnotation
-
- fields() - Method in class ome.model.annotations.DoubleAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
-
- fields() - Method in class ome.model.annotations.ExperimenterAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- fields() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.FileAnnotation
-
- fields() - Method in class ome.model.annotations.FileAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.FilesetAnnotationLink
-
- fields() - Method in class ome.model.annotations.FilesetAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.FilterAnnotationLink
-
- fields() - Method in class ome.model.annotations.FilterAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.FolderAnnotationLink
-
- fields() - Method in class ome.model.annotations.FolderAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.ImageAnnotationLink
-
- fields() - Method in class ome.model.annotations.ImageAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.InstrumentAnnotationLink
-
- fields() - Method in class ome.model.annotations.InstrumentAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.LightPathAnnotationLink
-
- fields() - Method in class ome.model.annotations.LightPathAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.LightSourceAnnotationLink
-
- fields() - Method in class ome.model.annotations.LightSourceAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.ListAnnotation
-
- fields() - Method in class ome.model.annotations.ListAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.LongAnnotation
-
- fields() - Method in class ome.model.annotations.LongAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.MapAnnotation
-
- fields() - Method in class ome.model.annotations.MapAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.NamespaceAnnotationLink
-
- fields() - Method in class ome.model.annotations.NamespaceAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.NodeAnnotationLink
-
- fields() - Method in class ome.model.annotations.NodeAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.NumericAnnotation
-
- fields() - Method in class ome.model.annotations.NumericAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
-
- fields() - Method in class ome.model.annotations.ObjectiveAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
-
- fields() - Method in class ome.model.annotations.OriginalFileAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
-
- fields() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
-
- fields() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.PlateAnnotationLink
-
- fields() - Method in class ome.model.annotations.PlateAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.ProjectAnnotationLink
-
- fields() - Method in class ome.model.annotations.ProjectAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.ReagentAnnotationLink
-
- fields() - Method in class ome.model.annotations.ReagentAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.RoiAnnotationLink
-
- fields() - Method in class ome.model.annotations.RoiAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.ScreenAnnotationLink
-
- fields() - Method in class ome.model.annotations.ScreenAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.SessionAnnotationLink
-
- fields() - Method in class ome.model.annotations.SessionAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.ShapeAnnotationLink
-
- fields() - Method in class ome.model.annotations.ShapeAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.TagAnnotation
-
- fields() - Method in class ome.model.annotations.TagAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.TermAnnotation
-
- fields() - Method in class ome.model.annotations.TermAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.TextAnnotation
-
- fields() - Method in class ome.model.annotations.TextAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.TimestampAnnotation
-
- fields() - Method in class ome.model.annotations.TimestampAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.TypeAnnotation
-
- fields() - Method in class ome.model.annotations.TypeAnnotation
-
- FIELDS - Static variable in class ome.model.annotations.WellAnnotationLink
-
- fields() - Method in class ome.model.annotations.WellAnnotationLink
-
- FIELDS - Static variable in class ome.model.annotations.XmlAnnotation
-
- fields() - Method in class ome.model.annotations.XmlAnnotation
-
- FIELDS - Static variable in class ome.model.containers.Dataset
-
- fields() - Method in class ome.model.containers.Dataset
-
- FIELDS - Static variable in class ome.model.containers.DatasetImageLink
-
- fields() - Method in class ome.model.containers.DatasetImageLink
-
- FIELDS - Static variable in class ome.model.containers.Folder
-
- fields() - Method in class ome.model.containers.Folder
-
- FIELDS - Static variable in class ome.model.containers.FolderImageLink
-
- fields() - Method in class ome.model.containers.FolderImageLink
-
- FIELDS - Static variable in class ome.model.containers.FolderRoiLink
-
- fields() - Method in class ome.model.containers.FolderRoiLink
-
- FIELDS - Static variable in class ome.model.containers.Project
-
- fields() - Method in class ome.model.containers.Project
-
- FIELDS - Static variable in class ome.model.containers.ProjectDatasetLink
-
- fields() - Method in class ome.model.containers.ProjectDatasetLink
-
- FIELDS - Static variable in class ome.model.core.Channel
-
- fields() - Method in class ome.model.core.Channel
-
- FIELDS - Static variable in class ome.model.core.Image
-
- fields() - Method in class ome.model.core.Image
-
- FIELDS - Static variable in class ome.model.core.LogicalChannel
-
- fields() - Method in class ome.model.core.LogicalChannel
-
- FIELDS - Static variable in class ome.model.core.OriginalFile
-
- fields() - Method in class ome.model.core.OriginalFile
-
- FIELDS - Static variable in class ome.model.core.Pixels
-
- fields() - Method in class ome.model.core.Pixels
-
- FIELDS - Static variable in class ome.model.core.PixelsOriginalFileMap
-
- fields() - Method in class ome.model.core.PixelsOriginalFileMap
-
- FIELDS - Static variable in class ome.model.core.PlaneInfo
-
- fields() - Method in class ome.model.core.PlaneInfo
-
- FIELDS - Static variable in class ome.model.display.ChannelBinding
-
- fields() - Method in class ome.model.display.ChannelBinding
-
- FIELDS - Static variable in class ome.model.display.CodomainMapContext
-
- fields() - Method in class ome.model.display.CodomainMapContext
-
- FIELDS - Static variable in class ome.model.display.ContrastStretchingContext
-
- fields() - Method in class ome.model.display.ContrastStretchingContext
-
- FIELDS - Static variable in class ome.model.display.PlaneSlicingContext
-
- fields() - Method in class ome.model.display.PlaneSlicingContext
-
- FIELDS - Static variable in class ome.model.display.ProjectionDef
-
- fields() - Method in class ome.model.display.ProjectionDef
-
- FIELDS - Static variable in class ome.model.display.QuantumDef
-
- fields() - Method in class ome.model.display.QuantumDef
-
- FIELDS - Static variable in class ome.model.display.RenderingDef
-
- fields() - Method in class ome.model.display.RenderingDef
-
- FIELDS - Static variable in class ome.model.display.ReverseIntensityContext
-
- fields() - Method in class ome.model.display.ReverseIntensityContext
-
- FIELDS - Static variable in class ome.model.display.Thumbnail
-
- fields() - Method in class ome.model.display.Thumbnail
-
- FIELDS - Static variable in class ome.model.enums.AcquisitionMode
-
- fields() - Method in class ome.model.enums.AcquisitionMode
-
- FIELDS - Static variable in class ome.model.enums.AdminPrivilege
-
- fields() - Method in class ome.model.enums.AdminPrivilege
-
- FIELDS - Static variable in class ome.model.enums.ArcType
-
- fields() - Method in class ome.model.enums.ArcType
-
- FIELDS - Static variable in class ome.model.enums.Binning
-
- fields() - Method in class ome.model.enums.Binning
-
- FIELDS - Static variable in class ome.model.enums.ChecksumAlgorithm
-
- fields() - Method in class ome.model.enums.ChecksumAlgorithm
-
- FIELDS - Static variable in class ome.model.enums.ContrastMethod
-
- fields() - Method in class ome.model.enums.ContrastMethod
-
- FIELDS - Static variable in class ome.model.enums.Correction
-
- fields() - Method in class ome.model.enums.Correction
-
- FIELDS - Static variable in class ome.model.enums.DetectorType
-
- fields() - Method in class ome.model.enums.DetectorType
-
- FIELDS - Static variable in class ome.model.enums.DimensionOrder
-
- fields() - Method in class ome.model.enums.DimensionOrder
-
- FIELDS - Static variable in class ome.model.enums.EventType
-
- fields() - Method in class ome.model.enums.EventType
-
- FIELDS - Static variable in class ome.model.enums.ExperimentType
-
- fields() - Method in class ome.model.enums.ExperimentType
-
- FIELDS - Static variable in class ome.model.enums.Family
-
- fields() - Method in class ome.model.enums.Family
-
- FIELDS - Static variable in class ome.model.enums.FilamentType
-
- fields() - Method in class ome.model.enums.FilamentType
-
- FIELDS - Static variable in class ome.model.enums.FilterType
-
- fields() - Method in class ome.model.enums.FilterType
-
- FIELDS - Static variable in class ome.model.enums.Format
-
- fields() - Method in class ome.model.enums.Format
-
- FIELDS - Static variable in class ome.model.enums.Illumination
-
- fields() - Method in class ome.model.enums.Illumination
-
- FIELDS - Static variable in class ome.model.enums.Immersion
-
- fields() - Method in class ome.model.enums.Immersion
-
- FIELDS - Static variable in class ome.model.enums.LaserMedium
-
- fields() - Method in class ome.model.enums.LaserMedium
-
- FIELDS - Static variable in class ome.model.enums.LaserType
-
- fields() - Method in class ome.model.enums.LaserType
-
- FIELDS - Static variable in class ome.model.enums.Medium
-
- fields() - Method in class ome.model.enums.Medium
-
- FIELDS - Static variable in class ome.model.enums.MicrobeamManipulationType
-
- fields() - Method in class ome.model.enums.MicrobeamManipulationType
-
- FIELDS - Static variable in class ome.model.enums.MicroscopeType
-
- fields() - Method in class ome.model.enums.MicroscopeType
-
- FIELDS - Static variable in class ome.model.enums.PhotometricInterpretation
-
- fields() - Method in class ome.model.enums.PhotometricInterpretation
-
- FIELDS - Static variable in class ome.model.enums.PixelsType
-
- fields() - Method in class ome.model.enums.PixelsType
-
- FIELDS - Static variable in class ome.model.enums.ProjectionAxis
-
- fields() - Method in class ome.model.enums.ProjectionAxis
-
- FIELDS - Static variable in class ome.model.enums.ProjectionType
-
- fields() - Method in class ome.model.enums.ProjectionType
-
- FIELDS - Static variable in class ome.model.enums.Pulse
-
- fields() - Method in class ome.model.enums.Pulse
-
- FIELDS - Static variable in class ome.model.enums.RenderingModel
-
- fields() - Method in class ome.model.enums.RenderingModel
-
- FIELDS - Static variable in class ome.model.experiment.Experiment
-
- fields() - Method in class ome.model.experiment.Experiment
-
- FIELDS - Static variable in class ome.model.experiment.MicrobeamManipulation
-
- fields() - Method in class ome.model.experiment.MicrobeamManipulation
-
- FIELDS - Static variable in class ome.model.fs.Fileset
-
- fields() - Method in class ome.model.fs.Fileset
-
- FIELDS - Static variable in class ome.model.fs.FilesetEntry
-
- fields() - Method in class ome.model.fs.FilesetEntry
-
- FIELDS - Static variable in class ome.model.fs.FilesetJobLink
-
- fields() - Method in class ome.model.fs.FilesetJobLink
-
- FIELDS - Static variable in class ome.model.internal.Link
-
- fields() - Method in class ome.model.internal.Link
-
- fields() - Method in interface ome.model.IObject
-
returns a Set of field names that belong to this class
- FIELDS - Static variable in class ome.model.jobs.ImportJob
-
Deprecated.
- fields() - Method in class ome.model.jobs.ImportJob
-
Deprecated.
- FIELDS - Static variable in class ome.model.jobs.IndexingJob
-
- fields() - Method in class ome.model.jobs.IndexingJob
-
- FIELDS - Static variable in class ome.model.jobs.IntegrityCheckJob
-
- fields() - Method in class ome.model.jobs.IntegrityCheckJob
-
- FIELDS - Static variable in class ome.model.jobs.Job
-
- fields() - Method in class ome.model.jobs.Job
-
- FIELDS - Static variable in class ome.model.jobs.JobOriginalFileLink
-
- fields() - Method in class ome.model.jobs.JobOriginalFileLink
-
- FIELDS - Static variable in class ome.model.jobs.JobStatus
-
- fields() - Method in class ome.model.jobs.JobStatus
-
- FIELDS - Static variable in class ome.model.jobs.MetadataImportJob
-
- fields() - Method in class ome.model.jobs.MetadataImportJob
-
- FIELDS - Static variable in class ome.model.jobs.ParseJob
-
- fields() - Method in class ome.model.jobs.ParseJob
-
- FIELDS - Static variable in class ome.model.jobs.PixelDataJob
-
- fields() - Method in class ome.model.jobs.PixelDataJob
-
- FIELDS - Static variable in class ome.model.jobs.ScriptJob
-
- fields() - Method in class ome.model.jobs.ScriptJob
-
- FIELDS - Static variable in class ome.model.jobs.ThumbnailGenerationJob
-
- fields() - Method in class ome.model.jobs.ThumbnailGenerationJob
-
- FIELDS - Static variable in class ome.model.jobs.UploadJob
-
- fields() - Method in class ome.model.jobs.UploadJob
-
- FIELDS - Static variable in class ome.model.meta.DBPatch
-
- fields() - Method in class ome.model.meta.DBPatch
-
- FIELDS - Static variable in class ome.model.meta.Event
-
- fields() - Method in class ome.model.meta.Event
-
- FIELDS - Static variable in class ome.model.meta.EventLog
-
- fields() - Method in class ome.model.meta.EventLog
-
- FIELDS - Static variable in class ome.model.meta.Experimenter
-
- fields() - Method in class ome.model.meta.Experimenter
-
- FIELDS - Static variable in class ome.model.meta.ExperimenterGroup
-
- fields() - Method in class ome.model.meta.ExperimenterGroup
-
- FIELDS - Static variable in class ome.model.meta.ExternalInfo
-
- fields() - Method in class ome.model.meta.ExternalInfo
-
- FIELDS - Static variable in class ome.model.meta.GroupExperimenterMap
-
- fields() - Method in class ome.model.meta.GroupExperimenterMap
-
- FIELDS - Static variable in class ome.model.meta.Namespace
-
- fields() - Method in class ome.model.meta.Namespace
-
- FIELDS - Static variable in class ome.model.meta.Node
-
- fields() - Method in class ome.model.meta.Node
-
- FIELDS - Static variable in class ome.model.meta.Session
-
- fields() - Method in class ome.model.meta.Session
-
- FIELDS - Static variable in class ome.model.meta.Share
-
- fields() - Method in class ome.model.meta.Share
-
- FIELDS - Static variable in class ome.model.meta.ShareMember
-
- fields() - Method in class ome.model.meta.ShareMember
-
- FIELDS - Static variable in class ome.model.roi.AffineTransform
-
- fields() - Method in class ome.model.roi.AffineTransform
-
- FIELDS - Static variable in class ome.model.roi.Ellipse
-
- fields() - Method in class ome.model.roi.Ellipse
-
- FIELDS - Static variable in class ome.model.roi.Label
-
- fields() - Method in class ome.model.roi.Label
-
- FIELDS - Static variable in class ome.model.roi.Line
-
- fields() - Method in class ome.model.roi.Line
-
- FIELDS - Static variable in class ome.model.roi.Mask
-
- fields() - Method in class ome.model.roi.Mask
-
- FIELDS - Static variable in class ome.model.roi.Path
-
Deprecated.
- fields() - Method in class ome.model.roi.Path
-
Deprecated.
- FIELDS - Static variable in class ome.model.roi.Point
-
- fields() - Method in class ome.model.roi.Point
-
- FIELDS - Static variable in class ome.model.roi.Polygon
-
- fields() - Method in class ome.model.roi.Polygon
-
- FIELDS - Static variable in class ome.model.roi.Polyline
-
- fields() - Method in class ome.model.roi.Polyline
-
- FIELDS - Static variable in class ome.model.roi.Rectangle
-
- fields() - Method in class ome.model.roi.Rectangle
-
- FIELDS - Static variable in class ome.model.roi.Roi
-
- fields() - Method in class ome.model.roi.Roi
-
- FIELDS - Static variable in class ome.model.roi.Shape
-
- fields() - Method in class ome.model.roi.Shape
-
- FIELDS - Static variable in class ome.model.screen.Plate
-
- fields() - Method in class ome.model.screen.Plate
-
- FIELDS - Static variable in class ome.model.screen.PlateAcquisition
-
- fields() - Method in class ome.model.screen.PlateAcquisition
-
- FIELDS - Static variable in class ome.model.screen.Reagent
-
- fields() - Method in class ome.model.screen.Reagent
-
- FIELDS - Static variable in class ome.model.screen.Screen
-
- fields() - Method in class ome.model.screen.Screen
-
- FIELDS - Static variable in class ome.model.screen.ScreenPlateLink
-
- fields() - Method in class ome.model.screen.ScreenPlateLink
-
- FIELDS - Static variable in class ome.model.screen.Well
-
- fields() - Method in class ome.model.screen.Well
-
- FIELDS - Static variable in class ome.model.screen.WellReagentLink
-
- fields() - Method in class ome.model.screen.WellReagentLink
-
- FIELDS - Static variable in class ome.model.screen.WellSample
-
- fields() - Method in class ome.model.screen.WellSample
-
- FIELDS - Static variable in class ome.model.stats.StatsInfo
-
- fields() - Method in class ome.model.stats.StatsInfo
-
- fields() - Method in class ome.util.PermDetails
-
- Filament - Class in ome.model.acquisition
-
- Filament() - Constructor for class ome.model.acquisition.Filament
-
- Filament(Long) - Constructor for class ome.model.acquisition.Filament
-
- Filament(Long, boolean) - Constructor for class ome.model.acquisition.Filament
-
Main constructor.
- Filament(FilamentType) - Constructor for class ome.model.acquisition.Filament
-
- FilamentType - Class in ome.model.enums
-
- FilamentType() - Constructor for class ome.model.enums.FilamentType
-
- FilamentType(Long) - Constructor for class ome.model.enums.FilamentType
-
- FilamentType(Long, boolean) - Constructor for class ome.model.enums.FilamentType
-
Main constructor.
- FilamentType(String) - Constructor for class ome.model.enums.FilamentType
-
- FilamentType.Details - Class in ome.model.enums
-
- file - Variable in class ome.model.annotations.FileAnnotation
-
- FILE - Static variable in class ome.model.annotations.FileAnnotation
-
- FileAnnotation - Class in ome.model.annotations
-
- FileAnnotation() - Constructor for class ome.model.annotations.FileAnnotation
-
- FileAnnotation(Long) - Constructor for class ome.model.annotations.FileAnnotation
-
- FileAnnotation(Long, boolean) - Constructor for class ome.model.annotations.FileAnnotation
-
Main constructor.
- fileId - Variable in class ome.util.SqlAction.DeleteLog
-
- fileIdsInDb(String, Set<String>) - Method in interface ome.util.SqlAction
-
Return all IDs matching the given mimetypes, or all IDs if mimetypes is null.
- fileIdsInDb(String, Set<String>) - Method in class ome.util.SqlAction.Impl
-
- fileRepo(long) - Method in interface ome.util.SqlAction
-
- fileRepo(long) - Method in class ome.util.SqlAction.Impl
-
- fileset - Variable in class ome.model.core.Image
-
- FILESET - Static variable in class ome.model.core.Image
-
- Fileset - Class in ome.model.fs
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- Fileset() - Constructor for class ome.model.fs.Fileset
-
- Fileset(Long) - Constructor for class ome.model.fs.Fileset
-
- Fileset(Long, boolean) - Constructor for class ome.model.fs.Fileset
-
Main constructor.
- Fileset(String) - Constructor for class ome.model.fs.Fileset
-
- fileset - Variable in class ome.model.fs.FilesetEntry
-
- FILESET - Static variable in class ome.model.fs.FilesetEntry
-
- Fileset.Details - Class in ome.model.fs
-
- FilesetAnnotationLink - Class in ome.model.annotations
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- FilesetAnnotationLink() - Constructor for class ome.model.annotations.FilesetAnnotationLink
-
- FilesetAnnotationLink(Long) - Constructor for class ome.model.annotations.FilesetAnnotationLink
-
- FilesetAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FilesetAnnotationLink
-
Main constructor.
- FilesetAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FilesetAnnotationLink
-
- FilesetAnnotationLink.Details - Class in ome.model.annotations
-
- filesetEntries - Variable in class ome.model.core.OriginalFile
-
- FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
-
- FilesetEntry - Class in ome.model.fs
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- FilesetEntry() - Constructor for class ome.model.fs.FilesetEntry
-
- FilesetEntry(Long) - Constructor for class ome.model.fs.FilesetEntry
-
- FilesetEntry(Long, boolean) - Constructor for class ome.model.fs.FilesetEntry
-
Main constructor.
- FilesetEntry(Fileset, OriginalFile, String) - Constructor for class ome.model.fs.FilesetEntry
-
- FilesetEntry.Details - Class in ome.model.fs
-
- FilesetJobLink - Class in ome.model.fs
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- FilesetJobLink() - Constructor for class ome.model.fs.FilesetJobLink
-
- FilesetJobLink(Long) - Constructor for class ome.model.fs.FilesetJobLink
-
- FilesetJobLink(Long, boolean) - Constructor for class ome.model.fs.FilesetJobLink
-
Main constructor.
- FilesetJobLink(IObject, IObject) - Constructor for class ome.model.fs.FilesetJobLink
-
- FilesetJobLink.Details - Class in ome.model.fs
-
- fillColor - Variable in class ome.model.roi.Shape
-
- FILLCOLOR - Static variable in class ome.model.roi.Shape
-
- fillObject(ReverseModelMapper) - Method in interface ome.model.ModelBased
-
- fillRule - Variable in class ome.model.roi.Shape
-
- FILLRULE - Static variable in class ome.model.roi.Shape
-
- Filter - Class in ome.model.acquisition
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- Filter() - Constructor for class ome.model.acquisition.Filter
-
- Filter(Long) - Constructor for class ome.model.acquisition.Filter
-
- Filter(Long, boolean) - Constructor for class ome.model.acquisition.Filter
-
Main constructor.
- Filter(Instrument) - Constructor for class ome.model.acquisition.Filter
-
- filter - Variable in class ome.model.acquisition.Instrument
-
- FILTER - Static variable in class ome.model.acquisition.Instrument
-
- Filter - Class in ome.parameters
-
parameter to generally reduce the size of a query result set.
- Filter() - Constructor for class ome.parameters.Filter
-
- filter(String, Filterable) - Method in class ome.util.ContextFilter
-
- filter(String, Collection) - Method in class ome.util.ContextFilter
-
iterates over the contents of the collection and filters each.
- filter(String, Map) - Method in class ome.util.ContextFilter
-
filters both the key and value sets of the map.
- filter(String, Object) - Method in class ome.util.ContextFilter
-
used when type is unknown.
- filter(String, ContextFilter.Entry) - Method in class ome.util.ContextFilter
-
doesn't return a new entry.
- Filter - Interface in ome.util
-
marks objects which can be filtered using {see FIXME }.
- filter(String, Filterable) - Method in interface ome.util.Filter
-
- filter(String, Collection) - Method in interface ome.util.Filter
-
- filter(String, Map) - Method in interface ome.util.Filter
-
- filter(String, Object) - Method in interface ome.util.Filter
-
- filter(String, Filterable) - Method in class ome.util.ModelMapper
-
- filter(String, Collection) - Method in class ome.util.ModelMapper
-
- filter(String, Map) - Method in class ome.util.ModelMapper
-
- filter(String, Object) - Method in class ome.util.RdfPrinter
-
- filter(String, Filterable) - Method in class ome.util.RdfPrinter
-
- filter(String, Collection) - Method in class ome.util.RdfPrinter
-
- Filter.Details - Class in ome.model.acquisition
-
- Filterable - Interface in ome.util
-
marks objects which can be filtered using {see FIXME }.
- FilterAnnotationLink - Class in ome.model.annotations
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- FilterAnnotationLink() - Constructor for class ome.model.annotations.FilterAnnotationLink
-
- FilterAnnotationLink(Long) - Constructor for class ome.model.annotations.FilterAnnotationLink
-
- FilterAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FilterAnnotationLink
-
Main constructor.
- FilterAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FilterAnnotationLink
-
- FilterAnnotationLink.Details - Class in ome.model.annotations
-
- filteredSet() - Method in class ome.model.internal.Details
-
copy of the current collection of filtered names.
- filteredSize() - Method in class ome.model.internal.Details
-
the count of collections which were filtered.
- filterFileIdsByRepo(String, List<Long>) - Method in interface ome.util.SqlAction
-
Find the original file IDs among those given that are in the given repository.
- filterFileIdsByRepo(String, List<Long>) - Method in class ome.util.SqlAction.Impl
-
- FilterSet - Class in ome.model.acquisition
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- FilterSet() - Constructor for class ome.model.acquisition.FilterSet
-
- FilterSet(Long) - Constructor for class ome.model.acquisition.FilterSet
-
- FilterSet(Long, boolean) - Constructor for class ome.model.acquisition.FilterSet
-
Main constructor.
- FilterSet(Instrument) - Constructor for class ome.model.acquisition.FilterSet
-
- filterSet - Variable in class ome.model.acquisition.Instrument
-
- FILTERSET - Static variable in class ome.model.acquisition.Instrument
-
- filterSet - Variable in class ome.model.acquisition.OTF
-
- FILTERSET - Static variable in class ome.model.acquisition.OTF
-
- filterSet - Variable in class ome.model.core.LogicalChannel
-
- FILTERSET - Static variable in class ome.model.core.LogicalChannel
-
- FilterSet.Details - Class in ome.model.acquisition
-
- FilterSetEmissionFilterLink - Class in ome.model.acquisition
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- FilterSetEmissionFilterLink() - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
-
- FilterSetEmissionFilterLink(Long) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
-
- FilterSetEmissionFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
-
Main constructor.
- FilterSetEmissionFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
-
- FilterSetEmissionFilterLink.Details - Class in ome.model.acquisition
-
- FilterSetExcitationFilterLink - Class in ome.model.acquisition
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- FilterSetExcitationFilterLink() - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
-
- FilterSetExcitationFilterLink(Long) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
-
- FilterSetExcitationFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
-
Main constructor.
- FilterSetExcitationFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
-
- FilterSetExcitationFilterLink.Details - Class in ome.model.acquisition
-
- FilterType - Class in ome.model.enums
-
- FilterType() - Constructor for class ome.model.enums.FilterType
-
- FilterType(Long) - Constructor for class ome.model.enums.FilterType
-
- FilterType(Long, boolean) - Constructor for class ome.model.enums.FilterType
-
Main constructor.
- FilterType(String) - Constructor for class ome.model.enums.FilterType
-
- FilterType.Details - Class in ome.model.enums
-
- filterWheel - Variable in class ome.model.acquisition.Filter
-
- FILTERWHEEL - Static variable in class ome.model.acquisition.Filter
-
- findAnnotationAnnotationLink(Annotation) - Method in class ome.model.annotations.Annotation
-
find all ome.model.annotations.AnnotationAnnotationLink which have the argument as their child.
- findChannelAnnotationLink(Annotation) - Method in class ome.model.core.Channel
-
find all ome.model.annotations.ChannelAnnotationLink which have the argument as their child.
- findClass(Class) - Method in class ome.util.ModelMapper
-
- findCollection(Collection) - Method in class ome.util.ModelMapper
-
- findCollectionTarget(Object) - Method in class ome.util.ModelMapper
-
extension point which subclasses can override to better map the
values of collections and maps.
- findDatasetAnnotationLink(Annotation) - Method in class ome.model.containers.Dataset
-
find all ome.model.annotations.DatasetAnnotationLink which have the argument as their child.
- findDatasetImageLink(Image) - Method in class ome.model.containers.Dataset
-
find all ome.model.containers.DatasetImageLink which have the argument as their child.
- findDatasetImageLink(Dataset) - Method in class ome.model.core.Image
-
find all ome.model.containers.DatasetImageLink which have the argument as their parent.
- findDetectorAnnotationLink(Annotation) - Method in class ome.model.acquisition.Detector
-
find all ome.model.annotations.DetectorAnnotationLink which have the argument as their child.
- findDichroicAnnotationLink(Annotation) - Method in class ome.model.acquisition.Dichroic
-
find all ome.model.annotations.DichroicAnnotationLink which have the argument as their child.
- findExperimenterAnnotationLink(Annotation) - Method in class ome.model.meta.Experimenter
-
find all ome.model.annotations.ExperimenterAnnotationLink which have the argument as their child.
- findExperimenterGroupAnnotationLink(Annotation) - Method in class ome.model.meta.ExperimenterGroup
-
find all ome.model.annotations.ExperimenterGroupAnnotationLink which have the argument as their child.
- findFilesetAnnotationLink(Annotation) - Method in class ome.model.fs.Fileset
-
find all ome.model.annotations.FilesetAnnotationLink which have the argument as their child.
- findFilesetJobLink(Job) - Method in class ome.model.fs.Fileset
-
find all ome.model.fs.FilesetJobLink which have the argument as their child.
- findFilterAnnotationLink(Annotation) - Method in class ome.model.acquisition.Filter
-
find all ome.model.annotations.FilterAnnotationLink which have the argument as their child.
- findFilterSetEmissionFilterLink(FilterSet) - Method in class ome.model.acquisition.Filter
-
find all ome.model.acquisition.FilterSetEmissionFilterLink which have the argument as their parent.
- findFilterSetEmissionFilterLink(Filter) - Method in class ome.model.acquisition.FilterSet
-
find all ome.model.acquisition.FilterSetEmissionFilterLink which have the argument as their child.
- findFilterSetExcitationFilterLink(FilterSet) - Method in class ome.model.acquisition.Filter
-
find all ome.model.acquisition.FilterSetExcitationFilterLink which have the argument as their parent.
- findFilterSetExcitationFilterLink(Filter) - Method in class ome.model.acquisition.FilterSet
-
find all ome.model.acquisition.FilterSetExcitationFilterLink which have the argument as their child.
- findFolderAnnotationLink(Annotation) - Method in class ome.model.containers.Folder
-
find all ome.model.annotations.FolderAnnotationLink which have the argument as their child.
- findFolderImageLink(Image) - Method in class ome.model.containers.Folder
-
find all ome.model.containers.FolderImageLink which have the argument as their child.
- findFolderImageLink(Folder) - Method in class ome.model.core.Image
-
find all ome.model.containers.FolderImageLink which have the argument as their parent.
- findFolderRoiLink(Roi) - Method in class ome.model.containers.Folder
-
find all ome.model.containers.FolderRoiLink which have the argument as their child.
- findFolderRoiLink(Folder) - Method in class ome.model.roi.Roi
-
find all ome.model.containers.FolderRoiLink which have the argument as their parent.
- findGroupExperimenterMap(ExperimenterGroup) - Method in class ome.model.meta.Experimenter
-
find all ome.model.meta.GroupExperimenterMap which have the argument as their parent.
- findGroupExperimenterMap(Experimenter) - Method in class ome.model.meta.ExperimenterGroup
-
find all ome.model.meta.GroupExperimenterMap which have the argument as their child.
- findImageAnnotationLink(Annotation) - Method in class ome.model.core.Image
-
find all ome.model.annotations.ImageAnnotationLink which have the argument as their child.
- findInstrumentAnnotationLink(Annotation) - Method in class ome.model.acquisition.Instrument
-
find all ome.model.annotations.InstrumentAnnotationLink which have the argument as their child.
- findJobOriginalFileLink(OriginalFile) - Method in class ome.model.jobs.Job
-
find all ome.model.jobs.JobOriginalFileLink which have the argument as their child.
- findKeyTarget(Object) - Method in class ome.util.ModelMapper
-
extension point which subclasses can override to better map the
keys of maps.
- findLightPathAnnotationLink(Annotation) - Method in class ome.model.acquisition.LightPath
-
find all ome.model.annotations.LightPathAnnotationLink which have the argument as their child.
- findLightPathEmissionFilterLink(Filter) - Method in class ome.model.acquisition.LightPath
-
find all ome.model.acquisition.LightPathEmissionFilterLink which have the argument as their child.
- findLightPathExcitationFilterLink(Filter) - Method in class ome.model.acquisition.LightPath
-
find all ome.model.acquisition.LightPathExcitationFilterLink which have the argument as their child.
- findLightSourceAnnotationLink(Annotation) - Method in class ome.model.acquisition.LightSource
-
find all ome.model.annotations.LightSourceAnnotationLink which have the argument as their child.
- findMap(Map) - Method in class ome.util.ModelMapper
-
- findNamespaceAnnotationLink(Annotation) - Method in class ome.model.meta.Namespace
-
find all ome.model.annotations.NamespaceAnnotationLink which have the argument as their child.
- findNodeAnnotationLink(Annotation) - Method in class ome.model.meta.Node
-
find all ome.model.annotations.NodeAnnotationLink which have the argument as their child.
- findObjectiveAnnotationLink(Annotation) - Method in class ome.model.acquisition.Objective
-
find all ome.model.annotations.ObjectiveAnnotationLink which have the argument as their child.
- findOldAdminPrivileges() - Method in interface ome.util.SqlAction
-
Find the completed transactions among the current light administrator privileges.
- findOldAdminPrivileges() - Method in class ome.util.SqlAction.Impl
-
- findOriginalFileAnnotationLink(Annotation) - Method in class ome.model.core.OriginalFile
-
find all ome.model.annotations.OriginalFileAnnotationLink which have the argument as their child.
- findPixelsOriginalFileMap(Pixels) - Method in class ome.model.core.OriginalFile
-
find all ome.model.core.PixelsOriginalFileMap which have the argument as their child.
- findPixelsOriginalFileMap(OriginalFile) - Method in class ome.model.core.Pixels
-
find all ome.model.core.PixelsOriginalFileMap which have the argument as their parent.
- findPlaneInfoAnnotationLink(Annotation) - Method in class ome.model.core.PlaneInfo
-
find all ome.model.annotations.PlaneInfoAnnotationLink which have the argument as their child.
- findPlateAcquisitionAnnotationLink(Annotation) - Method in class ome.model.screen.PlateAcquisition
-
find all ome.model.annotations.PlateAcquisitionAnnotationLink which have the argument as their child.
- findPlateAnnotationLink(Annotation) - Method in class ome.model.screen.Plate
-
find all ome.model.annotations.PlateAnnotationLink which have the argument as their child.
- findProjectAnnotationLink(Annotation) - Method in class ome.model.containers.Project
-
find all ome.model.annotations.ProjectAnnotationLink which have the argument as their child.
- findProjectDatasetLink(Project) - Method in class ome.model.containers.Dataset
-
find all ome.model.containers.ProjectDatasetLink which have the argument as their parent.
- findProjectDatasetLink(Dataset) - Method in class ome.model.containers.Project
-
find all ome.model.containers.ProjectDatasetLink which have the argument as their child.
- findReagentAnnotationLink(Annotation) - Method in class ome.model.screen.Reagent
-
find all ome.model.annotations.ReagentAnnotationLink which have the argument as their child.
- findRepoDeleteLogs(SqlAction.DeleteLog) - Method in interface ome.util.SqlAction
-
Find all
SqlAction.DeleteLog
entries which match all of the non-null
fields provided in the template.
- findRepoDeleteLogs(SqlAction.DeleteLog) - Method in class ome.util.SqlAction.Impl
-
- findRepoFile(String, String, String) - Method in interface ome.util.SqlAction
-
- findRepoFile(String, String, String, String) - Method in interface ome.util.SqlAction
-
- findRepoFile(String, String, String, Set<String>) - Method in interface ome.util.SqlAction
-
Lookup the id of an
OriginalFile
in a given
repository or return null if none is found.
- findRepoFile(String, String, String) - Method in class ome.util.SqlAction.Impl
-
- findRepoFile(String, String, String, String) - Method in class ome.util.SqlAction.Impl
-
- findRepoFile(String, String, String, Set<String>) - Method in class ome.util.SqlAction.Impl
-
- findRepoFilePath(String, long) - Method in interface ome.util.SqlAction
-
- findRepoFilePath(String, long) - Method in class ome.util.SqlAction.Impl
-
- findRepoFiles(String, String, List<String>, Set<String>) - Method in interface ome.util.SqlAction
-
- findRepoFiles(String, String) - Method in interface ome.util.SqlAction
-
Return a list of original file ids that all have a path value matching
the passed dirname in the given repository.
- findRepoFiles(String, String, List<String>, Set<String>) - Method in class ome.util.SqlAction.Impl
-
- findRepoFiles(String, String) - Method in class ome.util.SqlAction.Impl
-
- findRepoImageFromPixels(long) - Method in class ome.util.actions.PostgresSqlAction
-
- findRepoImageFromPixels(long) - Method in interface ome.util.SqlAction
-
- findRepoPixels(String, String, String) - Method in class ome.util.actions.PostgresSqlAction
-
- findRepoPixels(String, String, String) - Method in interface ome.util.SqlAction
-
- findRepoRootPath(String) - Method in interface ome.util.SqlAction
-
Find the path of the repository root.
- findRepoRootPath(String) - Method in class ome.util.SqlAction.Impl
-
- findRoiAnnotationLink(Annotation) - Method in class ome.model.roi.Roi
-
find all ome.model.annotations.RoiAnnotationLink which have the argument as their child.
- findScreenAnnotationLink(Annotation) - Method in class ome.model.screen.Screen
-
find all ome.model.annotations.ScreenAnnotationLink which have the argument as their child.
- findScreenPlateLink(Screen) - Method in class ome.model.screen.Plate
-
find all ome.model.screen.ScreenPlateLink which have the argument as their parent.
- findScreenPlateLink(Plate) - Method in class ome.model.screen.Screen
-
find all ome.model.screen.ScreenPlateLink which have the argument as their child.
- findSessionAnnotationLink(Annotation) - Method in class ome.model.meta.Session
-
find all ome.model.annotations.SessionAnnotationLink which have the argument as their child.
- findShapeAnnotationLink(Annotation) - Method in class ome.model.roi.Shape
-
find all ome.model.annotations.ShapeAnnotationLink which have the argument as their child.
- findTarget(Object) - Method in class ome.util.ModelMapper
-
known immutables are return unchanged.
- findWellAnnotationLink(Annotation) - Method in class ome.model.screen.Well
-
find all ome.model.annotations.WellAnnotationLink which have the argument as their child.
- findWellReagentLink(Well) - Method in class ome.model.screen.Reagent
-
find all ome.model.screen.WellReagentLink which have the argument as their parent.
- findWellReagentLink(Reagent) - Method in class ome.model.screen.Well
-
find all ome.model.screen.WellReagentLink which have the argument as their child.
- finished - Variable in class ome.model.jobs.Job
-
- FINISHED - Static variable in class ome.model.jobs.Job
-
- finished - Variable in class ome.model.meta.DBPatch
-
- FINISHED - Static variable in class ome.model.meta.DBPatch
-
- firstName - Variable in class ome.model.meta.Experimenter
-
- FIRSTNAME - Static variable in class ome.model.meta.Experimenter
-
- FLOAT - Static variable in class ome.util.PixelData
-
Identifies the type used to store pixel values.
- fluor - Variable in class ome.model.core.LogicalChannel
-
- FLUOR - Static variable in class ome.model.core.LogicalChannel
-
- Folder - Class in ome.model.containers
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- Folder() - Constructor for class ome.model.containers.Folder
-
- Folder(Long) - Constructor for class ome.model.containers.Folder
-
- Folder(Long, boolean) - Constructor for class ome.model.containers.Folder
-
Main constructor.
- Folder(String) - Constructor for class ome.model.containers.Folder
-
- Folder.Details - Class in ome.model.containers
-
- FolderAnnotationLink - Class in ome.model.annotations
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- FolderAnnotationLink() - Constructor for class ome.model.annotations.FolderAnnotationLink
-
- FolderAnnotationLink(Long) - Constructor for class ome.model.annotations.FolderAnnotationLink
-
- FolderAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FolderAnnotationLink
-
Main constructor.
- FolderAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FolderAnnotationLink
-
- FolderAnnotationLink.Details - Class in ome.model.annotations
-
- FolderImageLink - Class in ome.model.containers
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- FolderImageLink() - Constructor for class ome.model.containers.FolderImageLink
-
- FolderImageLink(Long) - Constructor for class ome.model.containers.FolderImageLink
-
- FolderImageLink(Long, boolean) - Constructor for class ome.model.containers.FolderImageLink
-
Main constructor.
- FolderImageLink(IObject, IObject) - Constructor for class ome.model.containers.FolderImageLink
-
- FolderImageLink.Details - Class in ome.model.containers
-
- folderLinks - Variable in class ome.model.core.Image
-
- FOLDERLINKS - Static variable in class ome.model.core.Image
-
- folderLinks - Variable in class ome.model.roi.Roi
-
- FOLDERLINKS - Static variable in class ome.model.roi.Roi
-
- FOLDERLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
-
- FOLDERLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Roi
-
- FolderRoiLink - Class in ome.model.containers
-
These filter definitions are used by the security system
to eliminate non-readable objects from queries.
- FolderRoiLink() - Constructor for class ome.model.containers.FolderRoiLink
-
- FolderRoiLink(Long) - Constructor for class ome.model.containers.FolderRoiLink
-
- FolderRoiLink(Long, boolean) - Constructor for class ome.model.containers.FolderRoiLink
-
Main constructor.
- FolderRoiLink(IObject, IObject) - Constructor for class ome.model.containers.FolderRoiLink
-
- FolderRoiLink.Details - Class in ome.model.containers
-
- fontFamily - Variable in class ome.model.roi.Shape
-
- FONTFAMILY - Static variable in class ome.model.roi.Shape
-
- fontSize - Variable in class ome.model.roi.Shape
-
- FONTSIZE - Static variable in class ome.model.roi.Shape
-
- fontStyle - Variable in class ome.model.roi.Shape
-
- FONTSTYLE - Static variable in class ome.model.roi.Shape
-
- format - Variable in class ome.model.core.Image
-
- FORMAT - Static variable in class ome.model.core.Image
-
- Format - Class in ome.model.enums
-
- Format() - Constructor for class ome.model.enums.Format
-
- Format(Long) - Constructor for class ome.model.enums.Format
-
- Format(Long, boolean) - Constructor for class ome.model.enums.Format
-
Main constructor.
- Format(String) - Constructor for class ome.model.enums.Format
-
- Format.Details - Class in ome.model.enums
-
- Frequency - Class in ome.model.units
-
class storing both a Frequency and a unit for that Frequency
(e.g.
- Frequency() - Constructor for class ome.model.units.Frequency
-
Deprecated.
- Frequency(double, String) - Constructor for class ome.model.units.Frequency
-
- Frequency(double, UnitsFrequency) - Constructor for class ome.model.units.Frequency
-
- Frequency(double, Unit<Frequency>) - Constructor for class ome.model.units.Frequency
-
- Frequency(Frequency) - Constructor for class ome.model.units.Frequency
-
- frequencyMultiplication - Variable in class ome.model.acquisition.Laser
-
- FREQUENCYMULTIPLICATION - Static variable in class ome.model.acquisition.Laser
-
- fromdbvalue(String) - Method in enum ome.model.units.UNITS
-
Perform the reverse lookup from
todbvalue(Object)
converting
the DB's enums which contain invalid characters to the upper-cased
CODE-based enums used elsewhere.
- gain - Variable in class ome.model.acquisition.Detector
-
- GAIN - Static variable in class ome.model.acquisition.Detector
-
- gain - Variable in class ome.model.acquisition.DetectorSettings
-
- GAIN - Static variable in class ome.model.acquisition.DetectorSettings
-
- generate(SessionImplementor, Object) - Method in class ome.util.TableIdGenerator
-
- GenericEnumType<E extends java.lang.Enum<E>> - Class in ome.model.units
-
http://octagen.at/2014/10/postgresql-custom-data-types-enum-in-hibernate/
- GenericEnumType() - Constructor for class ome.model.units.GenericEnumType
-
- GenericExcitationSource - Class in ome.model.acquisition
-
- GenericExcitationSource() - Constructor for class ome.model.acquisition.GenericExcitationSource
-
- GenericExcitationSource(Long) - Constructor for class ome.model.acquisition.GenericExcitationSource
-
- GenericExcitationSource(Long, boolean) - Constructor for class ome.model.acquisition.GenericExcitationSource
-
Main constructor.
- get(String) - Method in class ome.parameters.Parameters
-
lookup a QueryParameter by name.
- getA00() - Method in class ome.model.roi.AffineTransform
-
Simple field ome.model.roi.AffineTransform.a00 (java.lang.Double)
- getA01() - Method in class ome.model.roi.AffineTransform
-
Simple field ome.model.roi.AffineTransform.a01 (java.lang.Double)
- getA02() - Method in class ome.model.roi.AffineTransform
-
Simple field ome.model.roi.AffineTransform.a02 (java.lang.Double)
- getA10() - Method in class ome.model.roi.AffineTransform
-
Simple field ome.model.roi.AffineTransform.a10 (java.lang.Double)
- getA11() - Method in class ome.model.roi.AffineTransform
-
Simple field ome.model.roi.AffineTransform.a11 (java.lang.Double)
- getA12() - Method in class ome.model.roi.AffineTransform
-
Simple field ome.model.roi.AffineTransform.a12 (java.lang.Double)
- getAcquisitionDate() - Method in class ome.model.core.Image
-
Simple field ome.model.core.Image.acquisitionDate (java.sql.Timestamp)
- getAction() - Method in class ome.model.meta.EventLog
-
Simple field ome.model.meta.EventLog.action (java.lang.String)
- getActive() - Method in class ome.model.display.ChannelBinding
-
Simple field ome.model.display.ChannelBinding.active (java.lang.Boolean)
- getActive() - Method in class ome.model.display.ProjectionDef
-
Simple field ome.model.display.ProjectionDef.active (java.lang.Boolean)
- getActive() - Method in class ome.model.meta.Share
-
Simple field ome.model.meta.Share.active (java.lang.Boolean)
- getAirPressure() - Method in class ome.model.acquisition.ImagingEnvironment
-
Enum-mapped unit-based field ome.model.acquisition.ImagingEnvironment.airPressure (ome.model.units.Pressure)
- getAlpha() - Method in class ome.model.core.Channel
-
Simple field ome.model.core.Channel.alpha (java.lang.Integer)
- getAlpha() - Method in class ome.model.display.ChannelBinding
-
Simple field ome.model.display.ChannelBinding.alpha (java.lang.Integer)
- getAlpha() - Method in class ome.model.screen.Well
-
Simple field ome.model.screen.Well.alpha (java.lang.Integer)
- getAmplificationGain() - Method in class ome.model.acquisition.Detector
-
Simple field ome.model.acquisition.Detector.amplificationGain (java.lang.Double)
- getAnnotationLinks() - Method in class ome.model.acquisition.Detector
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.acquisition.Dichroic
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.acquisition.Filter
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.acquisition.Instrument
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.acquisition.LightPath
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.acquisition.LightSource
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.acquisition.Objective
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.annotations.Annotation
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.containers.Dataset
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.containers.Folder
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.containers.Project
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.core.Channel
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.core.Image
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.core.OriginalFile
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.core.PlaneInfo
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.fs.Fileset
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.meta.Experimenter
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.meta.Namespace
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.meta.Node
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.meta.Session
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.roi.Roi
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.roi.Shape
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.screen.Plate
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.screen.Reagent
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.screen.Screen
-
returns annotationLinks .
- getAnnotationLinks() - Method in class ome.model.screen.Well
-
returns annotationLinks .
- getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Detector
-
If fetched, returns the count(*) of ome.model.annotations.DetectorAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Dichroic
-
If fetched, returns the count(*) of ome.model.annotations.DichroicAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Filter
-
If fetched, returns the count(*) of ome.model.annotations.FilterAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Instrument
-
If fetched, returns the count(*) of ome.model.annotations.InstrumentAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.LightPath
-
If fetched, returns the count(*) of ome.model.annotations.LightPathAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.LightSource
-
If fetched, returns the count(*) of ome.model.annotations.LightSourceAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Objective
-
If fetched, returns the count(*) of ome.model.annotations.ObjectiveAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.annotations.Annotation
-
If fetched, returns the count(*) of ome.model.annotations.AnnotationAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Dataset
-
If fetched, returns the count(*) of ome.model.annotations.DatasetAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Folder
-
If fetched, returns the count(*) of ome.model.annotations.FolderAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Project
-
If fetched, returns the count(*) of ome.model.annotations.ProjectAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.core.Channel
-
If fetched, returns the count(*) of ome.model.annotations.ChannelAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.core.Image
-
If fetched, returns the count(*) of ome.model.annotations.ImageAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.core.OriginalFile
-
If fetched, returns the count(*) of ome.model.annotations.OriginalFileAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.core.PlaneInfo
-
If fetched, returns the count(*) of ome.model.annotations.PlaneInfoAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.fs.Fileset
-
If fetched, returns the count(*) of ome.model.annotations.FilesetAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Experimenter
-
If fetched, returns the count(*) of ome.model.annotations.ExperimenterAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.ExperimenterGroup
-
If fetched, returns the count(*) of ome.model.annotations.ExperimenterGroupAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Namespace
-
If fetched, returns the count(*) of ome.model.annotations.NamespaceAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Node
-
If fetched, returns the count(*) of ome.model.annotations.NodeAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Session
-
If fetched, returns the count(*) of ome.model.annotations.SessionAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.roi.Roi
-
If fetched, returns the count(*) of ome.model.annotations.RoiAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.roi.Shape
-
If fetched, returns the count(*) of ome.model.annotations.ShapeAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Plate
-
If fetched, returns the count(*) of ome.model.annotations.PlateAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.PlateAcquisition
-
If fetched, returns the count(*) of ome.model.annotations.PlateAcquisitionAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Reagent
-
If fetched, returns the count(*) of ome.model.annotations.ReagentAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Screen
-
If fetched, returns the count(*) of ome.model.annotations.ScreenAnnotationLink that a user has.
- getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Well
-
If fetched, returns the count(*) of ome.model.annotations.WellAnnotationLink that a user has.
- getArchived() - Method in class ome.model.core.Image
-
Simple field ome.model.core.Image.archived (java.lang.Boolean)
- getAtime() - Method in class ome.model.core.OriginalFile
-
Simple field ome.model.core.OriginalFile.atime (java.sql.Timestamp)
- getAttenuation() - Method in class ome.model.acquisition.LightSettings
-
Simple field ome.model.acquisition.LightSettings.attenuation (java.lang.Double)
- getAxis() - Method in class ome.model.display.ProjectionDef
-
Many-to-one field ome.model.display.ProjectionDef.axis (ome.model.enums.ProjectionAxis)
- getBinning() - Method in class ome.model.acquisition.DetectorSettings
-
Many-to-one field ome.model.acquisition.DetectorSettings.binning (ome.model.enums.Binning)
- getBitDepth(String) - Static method in class ome.util.PixelData
-
Retrieves the bit width of a particular PixelsType
.
- getBitResolution() - Method in class ome.model.display.QuantumDef
-
Simple field ome.model.display.QuantumDef.bitResolution (java.lang.Integer)
- getBitSize() - Method in class ome.model.enums.PixelsType
-
Simple field ome.model.enums.PixelsType.bitSize (java.lang.Integer)
- getBlue() - Method in class ome.model.core.Channel
-
Simple field ome.model.core.Channel.blue (java.lang.Integer)
- getBlue() - Method in class ome.model.display.ChannelBinding
-
Simple field ome.model.display.ChannelBinding.blue (java.lang.Integer)
- getBlue() - Method in class ome.model.screen.Well
-
Simple field ome.model.screen.Well.blue (java.lang.Integer)
- getBoolValue() - Method in class ome.model.annotations.BooleanAnnotation
-
Simple field ome.model.annotations.BooleanAnnotation.boolValue (java.lang.Boolean)
- getBytes() - Method in class ome.model.roi.Mask
-
Simple field ome.model.roi.Mask.bytes (byte[])
- getCalibratedMagnification() - Method in class ome.model.acquisition.Objective
-
Simple field ome.model.acquisition.Objective.calibratedMagnification (java.lang.Double)
- getCdEnd() - Method in class ome.model.display.QuantumDef
-
Simple field ome.model.display.QuantumDef.cdEnd (java.lang.Integer)
- getCdStart() - Method in class ome.model.display.QuantumDef
-
Simple field ome.model.display.QuantumDef.cdStart (java.lang.Integer)
- getChannel(int) - Method in class ome.model.core.Pixels
-
Gets the ome.model.core.Channel at the given index.
- getChannelBinding() - Method in class ome.model.display.CodomainMapContext
-
Many-to-one field ome.model.display.CodomainMapContext.channelBinding (ome.model.display.ChannelBinding)
- getChannelBinding(int) - Method in class ome.model.display.RenderingDef
-
Gets the ome.model.display.ChannelBinding at the given index.
- getChannels() - Method in class ome.model.core.LogicalChannel
-
returns channels .
- getChannels() - Method in class ome.model.core.Pixels
-
returns channels .
- getChild() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
-
Many-to-one field ome.model.acquisition.FilterSetEmissionFilterLink.child (ome.model.acquisition.Filter)
- getChild() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
-
Many-to-one field ome.model.acquisition.FilterSetExcitationFilterLink.child (ome.model.acquisition.Filter)
- getChild() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
-
Many-to-one field ome.model.acquisition.LightPathEmissionFilterLink.child (ome.model.acquisition.Filter)
- getChild() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
-
Many-to-one field ome.model.acquisition.LightPathExcitationFilterLink.child (ome.model.acquisition.Filter)
- getChild() - Method in class ome.model.annotations.AnnotationAnnotationLink
-
Many-to-one field ome.model.annotations.AnnotationAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.ChannelAnnotationLink
-
Many-to-one field ome.model.annotations.ChannelAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.DatasetAnnotationLink
-
Many-to-one field ome.model.annotations.DatasetAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.DetectorAnnotationLink
-
Many-to-one field ome.model.annotations.DetectorAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.DichroicAnnotationLink
-
Many-to-one field ome.model.annotations.DichroicAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.ExperimenterAnnotationLink
-
Many-to-one field ome.model.annotations.ExperimenterAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
-
Many-to-one field ome.model.annotations.ExperimenterGroupAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.FilesetAnnotationLink
-
Many-to-one field ome.model.annotations.FilesetAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.FilterAnnotationLink
-
Many-to-one field ome.model.annotations.FilterAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.FolderAnnotationLink
-
Many-to-one field ome.model.annotations.FolderAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.ImageAnnotationLink
-
Many-to-one field ome.model.annotations.ImageAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.InstrumentAnnotationLink
-
Many-to-one field ome.model.annotations.InstrumentAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.LightPathAnnotationLink
-
Many-to-one field ome.model.annotations.LightPathAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.LightSourceAnnotationLink
-
Many-to-one field ome.model.annotations.LightSourceAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.NamespaceAnnotationLink
-
Many-to-one field ome.model.annotations.NamespaceAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.NodeAnnotationLink
-
Many-to-one field ome.model.annotations.NodeAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.ObjectiveAnnotationLink
-
Many-to-one field ome.model.annotations.ObjectiveAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.OriginalFileAnnotationLink
-
Many-to-one field ome.model.annotations.OriginalFileAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
-
Many-to-one field ome.model.annotations.PlaneInfoAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
-
Many-to-one field ome.model.annotations.PlateAcquisitionAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.PlateAnnotationLink
-
Many-to-one field ome.model.annotations.PlateAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.ProjectAnnotationLink
-
Many-to-one field ome.model.annotations.ProjectAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.ReagentAnnotationLink
-
Many-to-one field ome.model.annotations.ReagentAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.RoiAnnotationLink
-
Many-to-one field ome.model.annotations.RoiAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.ScreenAnnotationLink
-
Many-to-one field ome.model.annotations.ScreenAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.SessionAnnotationLink
-
Many-to-one field ome.model.annotations.SessionAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.ShapeAnnotationLink
-
Many-to-one field ome.model.annotations.ShapeAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.annotations.WellAnnotationLink
-
Many-to-one field ome.model.annotations.WellAnnotationLink.child (ome.model.annotations.Annotation)
- getChild() - Method in class ome.model.containers.DatasetImageLink
-
Many-to-one field ome.model.containers.DatasetImageLink.child (ome.model.core.Image)
- getChild() - Method in class ome.model.containers.FolderImageLink
-
Many-to-one field ome.model.containers.FolderImageLink.child (ome.model.core.Image)
- getChild() - Method in class ome.model.containers.FolderRoiLink
-
Many-to-one field ome.model.containers.FolderRoiLink.child (ome.model.roi.Roi)
- getChild() - Method in class ome.model.containers.ProjectDatasetLink
-
Many-to-one field ome.model.containers.ProjectDatasetLink.child (ome.model.containers.Dataset)
- getChild() - Method in class ome.model.core.PixelsOriginalFileMap
-
Many-to-one field ome.model.core.PixelsOriginalFileMap.child (ome.model.core.Pixels)
- getChild() - Method in class ome.model.fs.FilesetJobLink
-
Many-to-one field ome.model.fs.FilesetJobLink.child (ome.model.jobs.Job)
- getChild() - Method in interface ome.model.ILink
-
- getChild() - Method in class ome.model.jobs.JobOriginalFileLink
-
Many-to-one field ome.model.jobs.JobOriginalFileLink.child (ome.model.core.OriginalFile)
- getChild() - Method in class ome.model.meta.GroupExperimenterMap
-
Many-to-one field ome.model.meta.GroupExperimenterMap.child (ome.model.meta.Experimenter)
- getChild() - Method in class ome.model.meta.ShareMember
-
Many-to-one field ome.model.meta.ShareMember.child (ome.model.meta.Experimenter)
- getChild() - Method in class ome.model.screen.ScreenPlateLink
-
Many-to-one field ome.model.screen.ScreenPlateLink.child (ome.model.screen.Plate)
- getChild() - Method in class ome.model.screen.WellReagentLink
-
Many-to-one field ome.model.screen.WellReagentLink.child (ome.model.screen.Reagent)
- getChildFolders() - Method in class ome.model.containers.Folder
-
returns childFolders .
- getClientPath() - Method in class ome.model.fs.FilesetEntry
-
Simple field ome.model.fs.FilesetEntry.clientPath (java.lang.String)
- getClosed() - Method in class ome.model.meta.Session
-
Simple field ome.model.meta.Session.closed (java.sql.Timestamp)
- getCo2percent() - Method in class ome.model.acquisition.ImagingEnvironment
-
Simple field ome.model.acquisition.ImagingEnvironment.co2percent (java.lang.Double)
- getCodomainMapContext(int) - Method in class ome.model.display.ChannelBinding
-
Gets the ome.model.display.CodomainMapContext at the given index.
- getCoefficient() - Method in class ome.model.display.ChannelBinding
-
Simple field ome.model.display.ChannelBinding.coefficient (java.lang.Double)
- getColumn() - Method in class ome.model.screen.Well
-
Simple field ome.model.screen.Well.column (java.lang.Integer)
- getColumnNamingConvention() - Method in class ome.model.screen.Plate
-
Simple field ome.model.screen.Plate.columnNamingConvention (java.lang.String)
- getColumns() - Method in class ome.model.screen.Plate
-
Simple field ome.model.screen.Plate.columns (java.lang.Integer)
- getCompression() - Method in class ome.model.display.RenderingDef
-
Simple field ome.model.display.RenderingDef.compression (java.lang.Double)
- getConfig() - Method in class ome.model.meta.Experimenter
-
- getConfig() - Method in class ome.model.meta.ExperimenterGroup
-
- getConn() - Method in class ome.model.meta.Node
-
Simple field ome.model.meta.Node.conn (java.lang.String)
- getConstant() - Method in class ome.model.display.PlaneSlicingContext
-
Simple field ome.model.display.PlaneSlicingContext.constant (java.lang.Boolean)
- getContainingEvent() - Method in class ome.model.meta.Event
-
Many-to-one field ome.model.meta.Event.containingEvent (ome.model.meta.Event)
- getContext() - Method in class ome.model.internal.Details
-
reference to the entity which this Details is contained in.
- getContrastMethod() - Method in class ome.model.core.LogicalChannel
-
Many-to-one field ome.model.core.LogicalChannel.contrastMethod (ome.model.enums.ContrastMethod)
- getCorrection() - Method in class ome.model.acquisition.Objective
-
Many-to-one field ome.model.acquisition.Objective.correction (ome.model.enums.Correction)
- getCorrectionCollar() - Method in class ome.model.acquisition.ObjectiveSettings
-
Simple field ome.model.acquisition.ObjectiveSettings.correctionCollar (java.lang.Double)
- getCreationEvent() - Method in class ome.model.acquisition.Detector.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.DetectorSettings.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.Dichroic.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.Filter.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.FilterSet.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.ImagingEnvironment.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.Instrument.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.LightPath.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.LightSettings.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.LightSource.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.Microscope.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.Objective.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.ObjectiveSettings.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.OTF.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.StageLabel.Details
-
- getCreationEvent() - Method in class ome.model.acquisition.TransmittanceRange.Details
-
- getCreationEvent() - Method in class ome.model.annotations.Annotation.Details
-
- getCreationEvent() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.FilterAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.FolderAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.ImageAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.NodeAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
-
- getCreationEvent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
-
- getCreationEvent()