Package omero.model

Class WellI

java.lang.Object

Ice.ObjectImpl

omero.model.IObject

omero.model.Well

omero.model.WellI

All Implemented Interfaces:

Ice.Object, java.io.Serializable, java.lang.Cloneable, ome.model.ModelBased, _IObjectOperations, _IObjectOperationsNC, _WellOperations, _WellOperationsNC

public class WellI
extends Well
implements ome.model.ModelBased

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	ALPHA
static java.lang.String	ANNOTATIONLINKS
static java.lang.String	BLUE
static java.lang.String	COLUMN
static java.lang.String	DETAILS
static java.lang.String	EXTERNALDESCRIPTION
static java.lang.String	EXTERNALIDENTIFIER
static java.lang.String	GREEN
static java.lang.String	PLATE
static java.lang.String	REAGENTLINKS
static java.lang.String	RED
static java.lang.String	ROW
static java.lang.String	STATUS
static java.lang.String	TYPE
static java.lang.String	WELLSAMPLES

Fields inherited from class omero.model.Well

__ids, alpha, annotationLinksCountPerOwner, annotationLinksLoaded, annotationLinksSeq, blue, column, externalDescription, externalIdentifier, green, plate, reagentLinksCountPerOwner, reagentLinksLoaded, reagentLinksSeq, red, row, serialVersionUID, status, type, version, wellSamplesLoaded, wellSamplesSeq

Fields inherited from class omero.model.IObject

details, id, loaded

Fields inherited from interface Ice.Object

ice_staticId

Constructor Summary

Constructors

Constructor	Description
WellI()
WellI(long id, boolean loaded)
WellI(RLong id, boolean loaded)

Method Summary

Modifier and Type	Method	Description
void	addAllWellAnnotationLinkSet(java.util.List<WellAnnotationLink> targets, Ice.Current current)
void	addAllWellReagentLinkSet(java.util.List<WellReagentLink> targets, Ice.Current current)
void	addAllWellSampleSet(java.util.List<WellSample> targets, Ice.Current current)
void	addWellAnnotationLink(WellAnnotationLink target, Ice.Current current)
void	addWellAnnotationLinkToBoth(WellAnnotationLink link, boolean bothSides, Ice.Current current)
void	addWellReagentLink(WellReagentLink target, Ice.Current current)
void	addWellReagentLinkToBoth(WellReagentLink link, boolean bothSides, Ice.Current current)
void	addWellSample(WellSample target, Ice.Current current)
static java.util.List<WellI>	cast(java.util.List list)	Casts (without warning) the given list to a list of the current type.
void	clearAnnotationLinks(Ice.Current current)
void	clearReagentLinks(Ice.Current current)
void	clearWellSamples(Ice.Current current)
java.util.List	copyAnnotationLinks(Ice.Current current)
void	copyObject(ome.util.Filterable model, ome.util.ModelMapper _mapper)	Used by IceMapper to inject an "ome.model" object into this "omero.model" object.
java.util.List	copyReagentLinks(Ice.Current current)
java.util.List	copyWellSamples(Ice.Current current)
protected void	errorIfUnloaded()
ome.util.Filterable	fillObject(ome.util.ReverseModelMapper _mapper)	Used by IceMapper produce an "ome.model" object from this "omero.model" object.
java.util.List<WellAnnotationLink>	findWellAnnotationLink(Annotation removal, Ice.Current current)
java.util.List<WellReagentLink>	findWellReagentLink(Reagent removal, Ice.Current current)
RInt	getAlpha(Ice.Current current)
protected java.util.List	getAnnotationLinks(Ice.Current current)
java.util.Map<java.lang.Long,java.lang.Long>	getAnnotationLinksCountPerOwner(Ice.Current current)
RInt	getBlue(Ice.Current current)
RInt	getColumn(Ice.Current current)
Details	getDetails(Ice.Current current)
RString	getExternalDescription(Ice.Current current)
RString	getExternalIdentifier(Ice.Current current)
RInt	getGreen(Ice.Current current)
RLong	getId(Ice.Current current)
Plate	getPlate(Ice.Current current)
WellSample	getPrimaryWellSample(Ice.Current current)
protected java.util.List	getReagentLinks(Ice.Current current)
java.util.Map<java.lang.Long,java.lang.Long>	getReagentLinksCountPerOwner(Ice.Current current)
RInt	getRed(Ice.Current current)
RInt	getRow(Ice.Current current)
RString	getStatus(Ice.Current current)
RString	getType(Ice.Current current)
RInt	getVersion(Ice.Current current)
WellSample	getWellSample(int index, Ice.Current current)
protected java.util.List	getWellSamples(Ice.Current current)
boolean	isAnnotated(Ice.Current current)	Allows for the attachment of any omero.model.Annotation subclasses.
boolean	isAnnotationLinksLoaded()
boolean	isGlobal(Ice.Current current)	Marker interface which means that special rules apply for both reading and writing these instances.
boolean	isLink(Ice.Current current)	A link between two other types.
boolean	isLoaded(Ice.Current current)	Tests if the objects are loaded or not.
boolean	isMutable(Ice.Current current)	The server will persist changes made to these types.
boolean	isReagentLinksLoaded()
boolean	isWellSamplesLoaded()
java.util.Iterator	iterateAnnotationLinks()
java.util.Iterator	iterateReagentLinks()
java.util.Iterator	iterateWellSamples()
WellAnnotationLink	linkAnnotation(Annotation addition, Ice.Current current)
java.util.List<Annotation>	linkedAnnotationList(Ice.Current current)
java.util.List<Reagent>	linkedReagentList(Ice.Current current)
WellReagentLink	linkReagent(Reagent addition, Ice.Current current)
IObject	proxy(Ice.Current current)	Return another instance of the same type as this instance constructed as if by: new InstanceI( this.id.val, false );
void	reloadAnnotationLinks(Well toCopy, Ice.Current current)
void	reloadReagentLinks(Well toCopy, Ice.Current current)
void	reloadWellSamples(Well toCopy, Ice.Current current)
void	removeAllWellAnnotationLinkSet(java.util.List<WellAnnotationLink> targets, Ice.Current current)
void	removeAllWellReagentLinkSet(java.util.List<WellReagentLink> targets, Ice.Current current)
void	removeAllWellSampleSet(java.util.List<WellSample> targets, Ice.Current current)
void	removeWellAnnotationLink(WellAnnotationLink target, Ice.Current current)
void	removeWellAnnotationLinkFromBoth(WellAnnotationLink link, boolean bothSides, Ice.Current current)
void	removeWellReagentLink(WellReagentLink target, Ice.Current current)
void	removeWellReagentLinkFromBoth(WellReagentLink link, boolean bothSides, Ice.Current current)
void	removeWellSample(WellSample target, Ice.Current current)
void	setAlpha(RInt alpha, Ice.Current current)
protected void	setAnnotationLinks(java.util.List annotationLinks, Ice.Current current)
void	setBlue(RInt blue, Ice.Current current)
void	setColumn(RInt column, Ice.Current current)
void	setExternalDescription(RString externalDescription, Ice.Current current)
void	setExternalIdentifier(RString externalIdentifier, Ice.Current current)
void	setGreen(RInt green, Ice.Current current)
void	setId(RLong id, Ice.Current current)
void	setPlate(Plate plate, Ice.Current current)
WellSample	setPrimaryWellSample(WellSample element, Ice.Current current)
protected void	setReagentLinks(java.util.List reagentLinks, Ice.Current current)
void	setRed(RInt red, Ice.Current current)
void	setRow(RInt row, Ice.Current current)
void	setStatus(RString status, Ice.Current current)
void	setType(RString type, Ice.Current current)
void	setVersion(RInt version, Ice.Current current)
WellSample	setWellSample(int index, WellSample element, Ice.Current current)
protected void	setWellSamples(java.util.List wellSamples, Ice.Current current)
IObject	shallowCopy(Ice.Current current)	Return another instance of the same type as this instance with all single-value entities unloaded and all members of collections also unloaded.
int	sizeOfAnnotationLinks(Ice.Current current)
int	sizeOfReagentLinks(Ice.Current current)
int	sizeOfWellSamples(Ice.Current current)
protected void	throwNullCollectionException(java.lang.String propertyName)
protected void	toggleCollectionsLoaded(boolean load)
void	unlinkAnnotation(Annotation removal, Ice.Current current)
void	unlinkReagent(Reagent removal, Ice.Current current)
void	unload(Ice.Current current)	Sets the loaded boolean to false and empties all state from this entity to make sending it over the network less costly.
void	unloadAlpha()
void	unloadAnnotationLinks(Ice.Current current)
void	unloadBlue()
void	unloadCollections(Ice.Current current)	Each collection can also be unloaded, independently of the object itself.
void	unloadColumn()
void	unloadDetails(Ice.Current current)	As with collections, the objects under details can link to many other objects.
void	unloadExternalDescription()
void	unloadExternalIdentifier()
void	unloadGreen()
void	unloadPlate()
void	unloadReagentLinks(Ice.Current current)
void	unloadRed()
void	unloadRow()
void	unloadStatus()
void	unloadType()
void	unloadWellSamples(Ice.Current current)

Methods inherited from class omero.model.Well

___addAllWellAnnotationLinkSet, ___addAllWellReagentLinkSet, ___addAllWellSampleSet, ___addWellAnnotationLink, ___addWellAnnotationLinkToBoth, ___addWellReagentLink, ___addWellReagentLinkToBoth, ___addWellSample, ___clearAnnotationLinks, ___clearReagentLinks, ___clearWellSamples, ___copyAnnotationLinks, ___copyReagentLinks, ___copyWellSamples, ___findWellAnnotationLink, ___findWellReagentLink, ___getAlpha, ___getAnnotationLinksCountPerOwner, ___getBlue, ___getColumn, ___getExternalDescription, ___getExternalIdentifier, ___getGreen, ___getPlate, ___getPrimaryWellSample, ___getReagentLinksCountPerOwner, ___getRed, ___getRow, ___getStatus, ___getType, ___getVersion, ___getWellSample, ___linkAnnotation, ___linkedAnnotationList, ___linkedReagentList, ___linkReagent, ___reloadAnnotationLinks, ___reloadReagentLinks, ___reloadWellSamples, ___removeAllWellAnnotationLinkSet, ___removeAllWellReagentLinkSet, ___removeAllWellSampleSet, ___removeWellAnnotationLink, ___removeWellAnnotationLinkFromBoth, ___removeWellReagentLink, ___removeWellReagentLinkFromBoth, ___removeWellSample, ___setAlpha, ___setBlue, ___setColumn, ___setExternalDescription, ___setExternalIdentifier, ___setGreen, ___setPlate, ___setPrimaryWellSample, ___setRed, ___setRow, ___setStatus, ___setType, ___setVersion, ___setWellSample, ___sizeOfAnnotationLinks, ___sizeOfReagentLinks, ___sizeOfWellSamples, ___unlinkAnnotation, ___unlinkReagent, ___unloadAnnotationLinks, ___unloadReagentLinks, ___unloadWellSamples, __dispatch, __readImpl, __writeImpl, addAllWellAnnotationLinkSet, addAllWellReagentLinkSet, addAllWellSampleSet, addWellAnnotationLink, addWellAnnotationLinkToBoth, addWellReagentLink, addWellReagentLinkToBoth, addWellSample, clearAnnotationLinks, clearReagentLinks, clearWellSamples, clone, copyAnnotationLinks, copyReagentLinks, copyWellSamples, findWellAnnotationLink, findWellReagentLink, getAlpha, getAnnotationLinksCountPerOwner, getBlue, getColumn, getExternalDescription, getExternalIdentifier, getGreen, getPlate, getPrimaryWellSample, getReagentLinksCountPerOwner, getRed, getRow, getStatus, getType, getVersion, getWellSample, ice_id, ice_id, ice_ids, ice_ids, ice_isA, ice_isA, ice_staticId, linkAnnotation, linkedAnnotationList, linkedReagentList, linkReagent, reloadAnnotationLinks, reloadReagentLinks, reloadWellSamples, removeAllWellAnnotationLinkSet, removeAllWellReagentLinkSet, removeAllWellSampleSet, removeWellAnnotationLink, removeWellAnnotationLinkFromBoth, removeWellReagentLink, removeWellReagentLinkFromBoth, removeWellSample, setAlpha, setBlue, setColumn, setExternalDescription, setExternalIdentifier, setGreen, setPlate, setPrimaryWellSample, setRed, setRow, setStatus, setType, setVersion, setWellSample, sizeOfAnnotationLinks, sizeOfReagentLinks, sizeOfWellSamples, unlinkAnnotation, unlinkReagent, unloadAnnotationLinks, unloadReagentLinks, unloadWellSamples

Methods inherited from class omero.model.IObject

___getDetails, ___getId, ___isAnnotated, ___isGlobal, ___isLink, ___isLoaded, ___isMutable, ___proxy, ___setId, ___shallowCopy, ___unload, ___unloadCollections, ___unloadDetails, getDetails, getId, isAnnotated, isGlobal, isLink, isLoaded, isMutable, proxy, setId, shallowCopy, unload, unloadCollections, unloadDetails

Methods inherited from class Ice.ObjectImpl

___ice_id, ___ice_ids, ___ice_isA, ___ice_ping, __checkMode, __read, __read, __readImpl, __write, __write, __writeImpl, ice_dispatch, ice_dispatch, ice_operationAttributes, ice_ping, ice_ping, ice_postUnmarshal, ice_preMarshal

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface omero.model._IObjectOperationsNC

getDetails, getId, isAnnotated, isGlobal, isLink, isLoaded, isMutable, proxy, setId, shallowCopy, unload, unloadCollections, unloadDetails

Field Detail

STATUS

public static final java.lang.String STATUS

See Also:

Constant Field Values

COLUMN

public static final java.lang.String COLUMN

See Also:

Constant Field Values

ROW

public static final java.lang.String ROW

See Also:

Constant Field Values

RED

public static final java.lang.String RED

See Also:

Constant Field Values

GREEN

public static final java.lang.String GREEN

See Also:

Constant Field Values

BLUE

public static final java.lang.String BLUE

See Also:

Constant Field Values

ALPHA

public static final java.lang.String ALPHA

See Also:

Constant Field Values

REAGENTLINKS

public static final java.lang.String REAGENTLINKS

See Also:

Constant Field Values

EXTERNALDESCRIPTION

public static final java.lang.String EXTERNALDESCRIPTION

See Also:

Constant Field Values

EXTERNALIDENTIFIER

public static final java.lang.String EXTERNALIDENTIFIER

See Also:

Constant Field Values

TYPE

public static final java.lang.String TYPE

See Also:

Constant Field Values

WELLSAMPLES

public static final java.lang.String WELLSAMPLES

See Also:

Constant Field Values

PLATE

public static final java.lang.String PLATE

See Also:

Constant Field Values

ANNOTATIONLINKS

public static final java.lang.String ANNOTATIONLINKS

See Also:

Constant Field Values

DETAILS

public static final java.lang.String DETAILS

See Also:

Constant Field Values

Constructor Detail

WellI

public WellI()

WellI

public WellI(long id,
             boolean loaded)

WellI

public WellI(RLong id,
             boolean loaded)

Method Detail

errorIfUnloaded

protected void errorIfUnloaded()
                        throws UnloadedEntityException

Throws:

UnloadedEntityException

throwNullCollectionException

protected void throwNullCollectionException(java.lang.String propertyName)
                                     throws UnloadedCollectionException

Throws:

UnloadedCollectionException

toggleCollectionsLoaded

protected void toggleCollectionsLoaded(boolean load)

unload

public void unload(Ice.Current current)

Description copied from interface: _IObjectOperations

Sets the loaded boolean to false and empties all state from this entity to make sending it over the network less costly.

Specified by:

unload in interface _IObjectOperations

Parameters:

current - The Current object for the invocation.

isLoaded

public boolean isLoaded(Ice.Current current)

Description copied from interface: _IObjectOperations

Tests if the objects are loaded or not. If this value is false, then any method call on this instance other than getId or setId will result in an exception.

Specified by:

isLoaded in interface _IObjectOperations

Parameters:

current - The Current object for the invocation.

unloadCollections

public void unloadCollections(Ice.Current current)

Description copied from interface: _IObjectOperations

Each collection can also be unloaded, independently of the object itself. To unload all collections, use: object.unloadCollections(); This is useful when it is possible that a collection no longer represents the state in the database, and passing the collections back to the server might delete some entities. Sending back empty collections can also save a significant amount of bandwidth, when working with large data graphs.

Specified by:

unloadCollections in interface _IObjectOperations

Parameters:

current - The Current object for the invocation.

isGlobal

public boolean isGlobal(Ice.Current current)

Description copied from interface: _IObjectOperations

Marker interface which means that special rules apply for both reading and writing these instances.

Specified by:

isGlobal in interface _IObjectOperations

Parameters:

current - The Current object for the invocation.

isMutable

public boolean isMutable(Ice.Current current)

Description copied from interface: _IObjectOperations

The server will persist changes made to these types. Methods provided: - getVersion() - setVersion()

Specified by:

isMutable in interface _IObjectOperations

Parameters:

current - The Current object for the invocation.

isAnnotated

public boolean isAnnotated(Ice.Current current)

Description copied from interface: _IObjectOperations

Allows for the attachment of any omero.model.Annotation subclasses. Methods provided are: - linkAnnotation(Annotation) -

Specified by:

isAnnotated in interface _IObjectOperations

Parameters:

current - The Current object for the invocation.

isLink

public boolean isLink(Ice.Current current)

Description copied from interface: _IObjectOperations

A link between two other types. Methods provided: - getParent() - getChild()

Specified by:

isLink in interface _IObjectOperations

Parameters:

current - The Current object for the invocation.

shallowCopy

public IObject shallowCopy(Ice.Current current)

Description copied from interface: _IObjectOperations

Return another instance of the same type as this instance with all single-value entities unloaded and all members of collections also unloaded.

Specified by:

shallowCopy in interface _IObjectOperations

Parameters:

current - The Current object for the invocation.

proxy

public IObject proxy(Ice.Current current)

Description copied from interface: _IObjectOperations

Return another instance of the same type as this instance constructed as if by: new InstanceI( this.id.val, false );

Specified by:

proxy in interface _IObjectOperations

Parameters:

current - The Current object for the invocation.

getId

public RLong getId(Ice.Current current)

Specified by:

getId in interface _IObjectOperations

setId

public void setId(RLong id,
                  Ice.Current current)

Specified by:

setId in interface _IObjectOperations

getDetails

public Details getDetails(Ice.Current current)

Specified by:

getDetails in interface _IObjectOperations

unloadDetails

public void unloadDetails(Ice.Current current)

Description copied from interface: _IObjectOperations

As with collections, the objects under details can link to many other objects. Unloading the details can same bandwidth and simplify the server logic.

Specified by:

unloadDetails in interface _IObjectOperations

Parameters:

current - The Current object for the invocation.

getVersion

public RInt getVersion(Ice.Current current)

Specified by:

getVersion in interface _WellOperations

setVersion

public void setVersion(RInt version,
                       Ice.Current current)

Specified by:

setVersion in interface _WellOperations

unloadStatus

public void unloadStatus()

getStatus

public RString getStatus(Ice.Current current)
                  throws UnloadedEntityException

Specified by:

getStatus in interface _WellOperations

Throws:

UnloadedEntityException

setStatus

public void setStatus(RString status,
                      Ice.Current current)
               throws UnloadedEntityException

Specified by:

setStatus in interface _WellOperations

Throws:

UnloadedEntityException

unloadColumn

public void unloadColumn()

getColumn

public RInt getColumn(Ice.Current current)
               throws UnloadedEntityException

Specified by:

getColumn in interface _WellOperations

Throws:

UnloadedEntityException

setColumn

public void setColumn(RInt column,
                      Ice.Current current)
               throws UnloadedEntityException

Specified by:

setColumn in interface _WellOperations

Throws:

UnloadedEntityException

unloadRow

public void unloadRow()

getRow

public RInt getRow(Ice.Current current)
            throws UnloadedEntityException

Specified by:

getRow in interface _WellOperations

Throws:

UnloadedEntityException

setRow

public void setRow(RInt row,
                   Ice.Current current)
            throws UnloadedEntityException

Specified by:

setRow in interface _WellOperations

Throws:

UnloadedEntityException

unloadRed

public void unloadRed()

getRed

public RInt getRed(Ice.Current current)
            throws UnloadedEntityException

Specified by:

getRed in interface _WellOperations

Throws:

UnloadedEntityException

setRed

public void setRed(RInt red,
                   Ice.Current current)
            throws UnloadedEntityException

Specified by:

setRed in interface _WellOperations

Throws:

UnloadedEntityException

unloadGreen

public void unloadGreen()

getGreen

public RInt getGreen(Ice.Current current)
              throws UnloadedEntityException

Specified by:

getGreen in interface _WellOperations

Throws:

UnloadedEntityException

setGreen

public void setGreen(RInt green,
                     Ice.Current current)
              throws UnloadedEntityException

Specified by:

setGreen in interface _WellOperations

Throws:

UnloadedEntityException

unloadBlue

public void unloadBlue()

getBlue

public RInt getBlue(Ice.Current current)
             throws UnloadedEntityException

Specified by:

getBlue in interface _WellOperations

Throws:

UnloadedEntityException

setBlue

public void setBlue(RInt blue,
                    Ice.Current current)
             throws UnloadedEntityException

Specified by:

setBlue in interface _WellOperations

Throws:

UnloadedEntityException

unloadAlpha

public void unloadAlpha()

getAlpha

public RInt getAlpha(Ice.Current current)
              throws UnloadedEntityException

Specified by:

getAlpha in interface _WellOperations

Throws:

UnloadedEntityException

setAlpha

public void setAlpha(RInt alpha,
                     Ice.Current current)
              throws UnloadedEntityException

Specified by:

setAlpha in interface _WellOperations

Throws:

UnloadedEntityException

unloadReagentLinks

public void unloadReagentLinks(Ice.Current current)

Specified by:

unloadReagentLinks in interface _WellOperations

getReagentLinks

protected java.util.List getReagentLinks(Ice.Current current)
                                  throws UnloadedEntityException

Throws:

UnloadedEntityException

setReagentLinks

protected void setReagentLinks(java.util.List reagentLinks,
                               Ice.Current current)
                        throws UnloadedEntityException

Throws:

UnloadedEntityException

isReagentLinksLoaded

public boolean isReagentLinksLoaded()

sizeOfReagentLinks

public int sizeOfReagentLinks(Ice.Current current)
                       throws UnloadedEntityException

Specified by:

sizeOfReagentLinks in interface _WellOperations

Throws:

UnloadedEntityException

copyReagentLinks

public java.util.List copyReagentLinks(Ice.Current current)
                                throws UnloadedEntityException

Specified by:

copyReagentLinks in interface _WellOperations

Throws:

UnloadedEntityException

iterateReagentLinks

public java.util.Iterator iterateReagentLinks()
                                       throws UnloadedEntityException

Throws:

UnloadedEntityException

addWellReagentLink

public void addWellReagentLink(WellReagentLink target,
                               Ice.Current current)
                        throws UnloadedEntityException

Specified by:

addWellReagentLink in interface _WellOperations

Throws:

UnloadedEntityException

addAllWellReagentLinkSet

public void addAllWellReagentLinkSet(java.util.List<WellReagentLink> targets,
                                     Ice.Current current)
                              throws UnloadedEntityException

Specified by:

addAllWellReagentLinkSet in interface _WellOperations

Throws:

UnloadedEntityException

removeWellReagentLink

public void removeWellReagentLink(WellReagentLink target,
                                  Ice.Current current)
                           throws UnloadedEntityException

Specified by:

removeWellReagentLink in interface _WellOperations

Throws:

UnloadedEntityException

removeAllWellReagentLinkSet

public void removeAllWellReagentLinkSet(java.util.List<WellReagentLink> targets,
                                        Ice.Current current)
                                 throws UnloadedEntityException

Specified by:

removeAllWellReagentLinkSet in interface _WellOperations

Throws:

UnloadedEntityException

clearReagentLinks

public void clearReagentLinks(Ice.Current current)
                       throws UnloadedEntityException

Specified by:

clearReagentLinks in interface _WellOperations

Throws:

UnloadedEntityException

reloadReagentLinks

public void reloadReagentLinks(Well toCopy,
                               Ice.Current current)
                        throws UnloadedEntityException

Specified by:

reloadReagentLinks in interface _WellOperations

Throws:

UnloadedEntityException

getReagentLinksCountPerOwner

public java.util.Map<java.lang.Long,java.lang.Long> getReagentLinksCountPerOwner(Ice.Current current)

Specified by:

getReagentLinksCountPerOwner in interface _WellOperations

linkReagent

public WellReagentLink linkReagent(Reagent addition,
                                   Ice.Current current)
                            throws UnloadedEntityException

Specified by:

linkReagent in interface _WellOperations

Throws:

UnloadedEntityException

addWellReagentLinkToBoth

public void addWellReagentLinkToBoth(WellReagentLink link,
                                     boolean bothSides,
                                     Ice.Current current)
                              throws UnloadedEntityException

Specified by:

addWellReagentLinkToBoth in interface _WellOperations

Throws:

UnloadedEntityException

findWellReagentLink

public java.util.List<WellReagentLink> findWellReagentLink(Reagent removal,
                                                           Ice.Current current)
                                                    throws UnloadedEntityException

Specified by:

findWellReagentLink in interface _WellOperations

Throws:

UnloadedEntityException

unlinkReagent

public void unlinkReagent(Reagent removal,
                          Ice.Current current)
                   throws UnloadedEntityException

Specified by:

unlinkReagent in interface _WellOperations

Throws:

UnloadedEntityException

removeWellReagentLinkFromBoth

public void removeWellReagentLinkFromBoth(WellReagentLink link,
                                          boolean bothSides,
                                          Ice.Current current)
                                   throws UnloadedEntityException,
                                          UnloadedCollectionException

Specified by:

removeWellReagentLinkFromBoth in interface _WellOperations

Throws:

UnloadedEntityException

UnloadedCollectionException

linkedReagentList

public java.util.List<Reagent> linkedReagentList(Ice.Current current)
                                          throws UnloadedEntityException

Specified by:

linkedReagentList in interface _WellOperations

Throws:

UnloadedEntityException

unloadExternalDescription

public void unloadExternalDescription()

getExternalDescription

public RString getExternalDescription(Ice.Current current)
                               throws UnloadedEntityException

Specified by:

getExternalDescription in interface _WellOperations

Throws:

UnloadedEntityException

setExternalDescription

public void setExternalDescription(RString externalDescription,
                                   Ice.Current current)
                            throws UnloadedEntityException

Specified by:

setExternalDescription in interface _WellOperations

Throws:

UnloadedEntityException

unloadExternalIdentifier

public void unloadExternalIdentifier()

getExternalIdentifier

public RString getExternalIdentifier(Ice.Current current)
                              throws UnloadedEntityException

Specified by:

getExternalIdentifier in interface _WellOperations

Throws:

UnloadedEntityException

setExternalIdentifier

public void setExternalIdentifier(RString externalIdentifier,
                                  Ice.Current current)
                           throws UnloadedEntityException

Specified by:

setExternalIdentifier in interface _WellOperations

Throws:

UnloadedEntityException

unloadType

public void unloadType()

getType

public RString getType(Ice.Current current)
                throws UnloadedEntityException

Specified by:

getType in interface _WellOperations

Throws:

UnloadedEntityException

setType

public void setType(RString type,
                    Ice.Current current)
             throws UnloadedEntityException

Specified by:

setType in interface _WellOperations

Throws:

UnloadedEntityException

unloadWellSamples

public void unloadWellSamples(Ice.Current current)

Specified by:

unloadWellSamples in interface _WellOperations

getWellSamples

protected java.util.List getWellSamples(Ice.Current current)
                                 throws UnloadedEntityException

Throws:

UnloadedEntityException

setWellSamples

protected void setWellSamples(java.util.List wellSamples,
                              Ice.Current current)
                       throws UnloadedEntityException

Throws:

UnloadedEntityException

isWellSamplesLoaded

public boolean isWellSamplesLoaded()

sizeOfWellSamples

public int sizeOfWellSamples(Ice.Current current)
                      throws UnloadedEntityException

Specified by:

sizeOfWellSamples in interface _WellOperations

Throws:

UnloadedEntityException

copyWellSamples

public java.util.List copyWellSamples(Ice.Current current)
                               throws UnloadedEntityException

Specified by:

copyWellSamples in interface _WellOperations

Throws:

UnloadedEntityException

iterateWellSamples

public java.util.Iterator iterateWellSamples()
                                      throws UnloadedEntityException

Throws:

UnloadedEntityException

addWellSample

public void addWellSample(WellSample target,
                          Ice.Current current)
                   throws UnloadedEntityException

Specified by:

addWellSample in interface _WellOperations

Throws:

UnloadedEntityException

addAllWellSampleSet

public void addAllWellSampleSet(java.util.List<WellSample> targets,
                                Ice.Current current)
                         throws UnloadedEntityException

Specified by:

addAllWellSampleSet in interface _WellOperations

Throws:

UnloadedEntityException

removeWellSample

public void removeWellSample(WellSample target,
                             Ice.Current current)
                      throws UnloadedEntityException

Specified by:

removeWellSample in interface _WellOperations

Throws:

UnloadedEntityException

removeAllWellSampleSet

public void removeAllWellSampleSet(java.util.List<WellSample> targets,
                                   Ice.Current current)
                            throws UnloadedEntityException

Specified by:

removeAllWellSampleSet in interface _WellOperations

Throws:

UnloadedEntityException

clearWellSamples

public void clearWellSamples(Ice.Current current)
                      throws UnloadedEntityException

Specified by:

clearWellSamples in interface _WellOperations

Throws:

UnloadedEntityException

reloadWellSamples

public void reloadWellSamples(Well toCopy,
                              Ice.Current current)
                       throws UnloadedEntityException

Specified by:

reloadWellSamples in interface _WellOperations

Throws:

UnloadedEntityException

getWellSample

public WellSample getWellSample(int index,
                                Ice.Current current)
                         throws java.lang.IndexOutOfBoundsException

Specified by:

getWellSample in interface _WellOperations

Throws:

java.lang.IndexOutOfBoundsException

setWellSample

public WellSample setWellSample(int index,
                                WellSample element,
                                Ice.Current current)
                         throws java.lang.IndexOutOfBoundsException

Specified by:

setWellSample in interface _WellOperations

Throws:

java.lang.IndexOutOfBoundsException

getPrimaryWellSample

public WellSample getPrimaryWellSample(Ice.Current current)
                                throws java.lang.IndexOutOfBoundsException

Specified by:

getPrimaryWellSample in interface _WellOperations

Throws:

java.lang.IndexOutOfBoundsException

setPrimaryWellSample

public WellSample setPrimaryWellSample(WellSample element,
                                       Ice.Current current)
                                throws java.lang.IndexOutOfBoundsException

Specified by:

setPrimaryWellSample in interface _WellOperations

Throws:

java.lang.IndexOutOfBoundsException

unloadPlate

public void unloadPlate()

getPlate

public Plate getPlate(Ice.Current current)
               throws UnloadedEntityException

Specified by:

getPlate in interface _WellOperations

Throws:

UnloadedEntityException

setPlate

public void setPlate(Plate plate,
                     Ice.Current current)
              throws UnloadedEntityException

Specified by:

setPlate in interface _WellOperations

Throws:

UnloadedEntityException

unloadAnnotationLinks

public void unloadAnnotationLinks(Ice.Current current)

Specified by:

unloadAnnotationLinks in interface _WellOperations

getAnnotationLinks

protected java.util.List getAnnotationLinks(Ice.Current current)
                                     throws UnloadedEntityException

Throws:

UnloadedEntityException

setAnnotationLinks

protected void setAnnotationLinks(java.util.List annotationLinks,
                                  Ice.Current current)
                           throws UnloadedEntityException

Throws:

UnloadedEntityException

isAnnotationLinksLoaded

public boolean isAnnotationLinksLoaded()

sizeOfAnnotationLinks

public int sizeOfAnnotationLinks(Ice.Current current)
                          throws UnloadedEntityException

Specified by:

sizeOfAnnotationLinks in interface _WellOperations

Throws:

UnloadedEntityException

copyAnnotationLinks

public java.util.List copyAnnotationLinks(Ice.Current current)
                                   throws UnloadedEntityException

Specified by:

copyAnnotationLinks in interface _WellOperations

Throws:

UnloadedEntityException

iterateAnnotationLinks

public java.util.Iterator iterateAnnotationLinks()
                                          throws UnloadedEntityException

Throws:

UnloadedEntityException

addWellAnnotationLink

public void addWellAnnotationLink(WellAnnotationLink target,
                                  Ice.Current current)
                           throws UnloadedEntityException

Specified by:

addWellAnnotationLink in interface _WellOperations

Throws:

UnloadedEntityException

addAllWellAnnotationLinkSet

public void addAllWellAnnotationLinkSet(java.util.List<WellAnnotationLink> targets,
                                        Ice.Current current)
                                 throws UnloadedEntityException

Specified by:

addAllWellAnnotationLinkSet in interface _WellOperations

Throws:

UnloadedEntityException

removeWellAnnotationLink

public void removeWellAnnotationLink(WellAnnotationLink target,
                                     Ice.Current current)
                              throws UnloadedEntityException

Specified by:

removeWellAnnotationLink in interface _WellOperations

Throws:

UnloadedEntityException

removeAllWellAnnotationLinkSet

public void removeAllWellAnnotationLinkSet(java.util.List<WellAnnotationLink> targets,
                                           Ice.Current current)
                                    throws UnloadedEntityException

Specified by:

removeAllWellAnnotationLinkSet in interface _WellOperations

Throws:

UnloadedEntityException

clearAnnotationLinks

public void clearAnnotationLinks(Ice.Current current)
                          throws UnloadedEntityException

Specified by:

clearAnnotationLinks in interface _WellOperations

Throws:

UnloadedEntityException

reloadAnnotationLinks

public void reloadAnnotationLinks(Well toCopy,
                                  Ice.Current current)
                           throws UnloadedEntityException

Specified by:

reloadAnnotationLinks in interface _WellOperations

Throws:

UnloadedEntityException

getAnnotationLinksCountPerOwner

public java.util.Map<java.lang.Long,java.lang.Long> getAnnotationLinksCountPerOwner(Ice.Current current)

Specified by:

getAnnotationLinksCountPerOwner in interface _WellOperations

linkAnnotation

public WellAnnotationLink linkAnnotation(Annotation addition,
                                         Ice.Current current)
                                  throws UnloadedEntityException

Specified by:

linkAnnotation in interface _WellOperations

Throws:

UnloadedEntityException

addWellAnnotationLinkToBoth

public void addWellAnnotationLinkToBoth(WellAnnotationLink link,
                                        boolean bothSides,
                                        Ice.Current current)
                                 throws UnloadedEntityException

Specified by:

addWellAnnotationLinkToBoth in interface _WellOperations

Throws:

UnloadedEntityException

findWellAnnotationLink

public java.util.List<WellAnnotationLink> findWellAnnotationLink(Annotation removal,
                                                                 Ice.Current current)
                                                          throws UnloadedEntityException

Specified by:

findWellAnnotationLink in interface _WellOperations

Throws:

UnloadedEntityException

unlinkAnnotation

public void unlinkAnnotation(Annotation removal,
                             Ice.Current current)
                      throws UnloadedEntityException

Specified by:

unlinkAnnotation in interface _WellOperations

Throws:

UnloadedEntityException

removeWellAnnotationLinkFromBoth

public void removeWellAnnotationLinkFromBoth(WellAnnotationLink link,
                                             boolean bothSides,
                                             Ice.Current current)
                                      throws UnloadedEntityException,
                                             UnloadedCollectionException

Specified by:

removeWellAnnotationLinkFromBoth in interface _WellOperations

Throws:

UnloadedEntityException

UnloadedCollectionException

linkedAnnotationList

public java.util.List<Annotation> linkedAnnotationList(Ice.Current current)
                                                throws UnloadedEntityException

Specified by:

linkedAnnotationList in interface _WellOperations

Throws:

UnloadedEntityException

copyObject

public void copyObject(ome.util.Filterable model,
                       ome.util.ModelMapper _mapper)

Used by IceMapper to inject an "ome.model" object into this "omero.model" object.

Specified by:

copyObject in interface ome.model.ModelBased

fillObject

public ome.util.Filterable fillObject(ome.util.ReverseModelMapper _mapper)

Used by IceMapper produce an "ome.model" object from this "omero.model" object.

Specified by:

fillObject in interface ome.model.ModelBased

cast

public static java.util.List<WellI> cast(java.util.List list)

Casts (without warning) the given list to a list of the current type.

Throws:

java.lang.ClassCastException