Package omero.api

Class _IPixelsDisp

java.lang.Object

Ice.ObjectImpl

omero.api._IPixelsDisp

All Implemented Interfaces:

Ice.Object, java.io.Serializable, java.lang.Cloneable, _IPixelsOperations, _IPixelsOperationsNC, _ServiceInterfaceOperations, _ServiceInterfaceOperationsNC, IPixels, ServiceInterface

Direct Known Subclasses:

_IPixelsTie

public abstract class _IPixelsDisp
extends Ice.ObjectImpl
implements IPixels

Metadata gateway for the RenderingEngine and clients. This service provides all DB access that the rendering engine needs as well as Pixels services to a client. It also allows the rendering engine to also be run external to the server (e.g. client-side).

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String[]	__ids
static long	serialVersionUID

Fields inherited from interface omero.api.IPixels

ice_staticId

Fields inherited from interface Ice.Object

ice_staticId

Constructor Summary

Constructors

Constructor	Description
_IPixelsDisp()

Method Summary

Modifier and Type	Method	Description
static Ice.DispatchStatus	___copyAndResizeImage(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___copyAndResizePixels(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___createImage(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getAllEnumerations(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getBitDepth(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getEnumeration(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___loadRndSettings(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___retrieveAllRndSettings(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___retrievePixDescription(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___retrieveRndSettings(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___retrieveRndSettingsFor(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___saveRndSettings(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___setChannelGlobalMinMax(IPixels __obj, IceInternal.Incoming __inS, Ice.Current __current)
Ice.DispatchStatus	__dispatch(IceInternal.Incoming in, Ice.Current __current)
protected void	__readImpl(IceInternal.BasicStream __is)
protected void	__writeImpl(IceInternal.BasicStream __os)
void	copyAndResizeImage_async(AMD_IPixels_copyAndResizeImage __cb, long imageId, RInt sizeX, RInt sizeY, RInt sizeZ, RInt sizeT, java.util.List<java.lang.Integer> channelList, java.lang.String methodology, boolean copyStats)	Copies the metadata, and only the metadata linked to a Image object into a new Image object of equal or differing size across one or many of its three physical dimensions or temporal dimension.
void	copyAndResizePixels_async(AMD_IPixels_copyAndResizePixels __cb, long pixelsId, RInt sizeX, RInt sizeY, RInt sizeZ, RInt sizeT, java.util.List<java.lang.Integer> channelList, java.lang.String methodology, boolean copyStats)	Copies the metadata, and only the metadata linked to a Pixels object into a new Pixels object of equal or differing size across one or many of its three physical dimensions or temporal dimension.
void	createImage_async(AMD_IPixels_createImage __cb, int sizeX, int sizeY, int sizeZ, int sizeT, java.util.List<java.lang.Integer> channelList, PixelsType pixelsType, java.lang.String name, java.lang.String description)	Creates the metadata, and only the metadata linked to an Image object.
void	getAllEnumerations_async(AMD_IPixels_getAllEnumerations __cb, java.lang.String enumClass)	Deprecated. Use ITypes#allEnumerations(string) instead.
void	getBitDepth_async(AMD_IPixels_getBitDepth __cb, PixelsType type)	Bit depth for a given pixel type.
void	getEnumeration_async(AMD_IPixels_getEnumeration __cb, java.lang.String enumClass, java.lang.String value)	Deprecated. Use ITypes#getEnumeration(string, string) instead.
protected void	ice_copyStateFrom(Ice.Object __obj)
java.lang.String	ice_id()
java.lang.String	ice_id(Ice.Current __current)
java.lang.String[]	ice_ids()
java.lang.String[]	ice_ids(Ice.Current __current)
boolean	ice_isA(java.lang.String s)
boolean	ice_isA(java.lang.String s, Ice.Current __current)
static java.lang.String	ice_staticId()
void	loadRndSettings_async(AMD_IPixels_loadRndSettings __cb, long renderingSettingsId)	Loads a specific set of rendering settings.
void	retrieveAllRndSettings_async(AMD_IPixels_retrieveAllRndSettings __cb, long pixId, long userId)	Retrieves all the rendering settings for a given pixels set and the passed user.
void	retrievePixDescription_async(AMD_IPixels_retrievePixDescription __cb, long pixId)	Retrieves the pixels metadata.
void	retrieveRndSettings_async(AMD_IPixels_retrieveRndSettings __cb, long pixId)	Retrieves the rendering settings for a given pixels set and the currently logged in user.
void	retrieveRndSettingsFor_async(AMD_IPixels_retrieveRndSettingsFor __cb, long pixId, long userId)	Retrieves the rendering settings for a given pixels set and the passed user.
void	saveRndSettings_async(AMD_IPixels_saveRndSettings __cb, RenderingDef rndSettings)	Saves the specified rendering settings.
void	setChannelGlobalMinMax_async(AMD_IPixels_setChannelGlobalMinMax __cb, long pixelsId, int channelIndex, double min, double max)	Sets the channel global (all 2D optical sections corresponding to a particular channel) minimum and maximum for a Pixels set.

Methods inherited from class Ice.ObjectImpl

___ice_id, ___ice_ids, ___ice_isA, ___ice_ping, __checkMode, __read, __read, __readImpl, __write, __write, __writeImpl, clone, ice_dispatch, ice_dispatch, ice_operationAttributes, ice_ping, ice_ping, ice_postUnmarshal, ice_preMarshal

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface omero.api._IPixelsOperations

copyAndResizeImage_async, copyAndResizePixels_async, createImage_async, getAllEnumerations_async, getBitDepth_async, getEnumeration_async, loadRndSettings_async, retrieveAllRndSettings_async, retrievePixDescription_async, retrieveRndSettings_async, retrieveRndSettingsFor_async, saveRndSettings_async, setChannelGlobalMinMax_async

Methods inherited from interface Ice.Object

__read, __read, __write, __write, clone, ice_dispatch, ice_dispatch, ice_operationAttributes, ice_ping, ice_ping, ice_postUnmarshal, ice_preMarshal

Field Detail

__ids

public static final java.lang.String[] __ids

serialVersionUID

public static final long serialVersionUID

See Also:

Constant Field Values

Constructor Detail

_IPixelsDisp

public _IPixelsDisp()

Method Detail

ice_copyStateFrom

protected void ice_copyStateFrom(Ice.Object __obj)
                          throws java.lang.CloneNotSupportedException

Throws:

java.lang.CloneNotSupportedException

ice_isA

public boolean ice_isA(java.lang.String s)

Specified by:

ice_isA in interface Ice.Object

Overrides:

ice_isA in class Ice.ObjectImpl

ice_isA

public boolean ice_isA(java.lang.String s,
                       Ice.Current __current)

Specified by:

ice_isA in interface Ice.Object

Overrides:

ice_isA in class Ice.ObjectImpl

ice_ids

public java.lang.String[] ice_ids()

Specified by:

ice_ids in interface Ice.Object

Overrides:

ice_ids in class Ice.ObjectImpl

ice_ids

public java.lang.String[] ice_ids(Ice.Current __current)

Specified by:

ice_ids in interface Ice.Object

Overrides:

ice_ids in class Ice.ObjectImpl

ice_id

public java.lang.String ice_id()

Specified by:

ice_id in interface Ice.Object

Overrides:

ice_id in class Ice.ObjectImpl

ice_id

public java.lang.String ice_id(Ice.Current __current)

Specified by:

ice_id in interface Ice.Object

Overrides:

ice_id in class Ice.ObjectImpl

ice_staticId

public static java.lang.String ice_staticId()

copyAndResizeImage_async

public final void copyAndResizeImage_async(AMD_IPixels_copyAndResizeImage __cb,
                                           long imageId,
                                           RInt sizeX,
                                           RInt sizeY,
                                           RInt sizeZ,
                                           RInt sizeT,
                                           java.util.List<java.lang.Integer> channelList,
                                           java.lang.String methodology,
                                           boolean copyStats)
                                    throws ServerError

Copies the metadata, and only the metadata linked to a Image object into a new Image object of equal or differing size across one or many of its three physical dimensions or temporal dimension. It is beyond the scope of this method to handle updates or changes to the raw pixel data available through RawPixelsStore or to add and link PlaneInfo and/or other Pixels set specific metadata. It is also assumed that the caller wishes the pixels dimensions and PixelsType to remain the same; changing these is outside the scope of this method. NOTE: As Channel objects are only able to apply to a single set of Pixels any annotations or linkage to these objects will be lost.

Specified by:

copyAndResizeImage_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

imageId - The source Image id.

sizeY - The new size across the Y-axis. null if the copy should maintain the same size.

sizeZ - The new size across the Z-axis. null if the copy should maintain the same size.

sizeT - The new number of timepoints. null if the copy should maintain the same number.

channelList - The channels that should be copied into the new Pixels set.

methodology - The name of the new Image.

Throws:

ValidationException - If the X, Y, Z, T or channelList dimensions are out of bounds or the Pixels object corresponding to pixelsId is unlocatable.

ServerError

copyAndResizePixels_async

public final void copyAndResizePixels_async(AMD_IPixels_copyAndResizePixels __cb,
                                            long pixelsId,
                                            RInt sizeX,
                                            RInt sizeY,
                                            RInt sizeZ,
                                            RInt sizeT,
                                            java.util.List<java.lang.Integer> channelList,
                                            java.lang.String methodology,
                                            boolean copyStats)
                                     throws ServerError

Copies the metadata, and only the metadata linked to a Pixels object into a new Pixels object of equal or differing size across one or many of its three physical dimensions or temporal dimension. It is beyond the scope of this method to handle updates or changes to the raw pixel data available through RawPixelsStore or to add and link PlaneInfo and/or other Pixels set specific metadata. It is also assumed that the caller wishes the pixels dimensions and PixelsType to remain the same; changing these is outside the scope of this method. NOTE: As Channel objects are only able to apply to a single set of Pixels any annotations or linkage to these objects will be lost.

Specified by:

copyAndResizePixels_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

pixelsId - The source Pixels set id.

sizeY - The new size across the Y-axis. null if the copy should maintain the same size.

sizeZ - The new size across the Z-axis. null if the copy should maintain the same size.

sizeT - The new number of timepoints. null if the copy should maintain the same number.

channelList - The channels that should be copied into the new Pixels set.

methodology - An optional string signifying the methodology that will be used to produce this new Pixels set.

copyStats - Whether or not to copy the StatsInfo for each channel.

Throws:

ValidationException - If the X, Y, Z, T or channelList dimensions are out of bounds or the Pixels object corresponding to pixelsId is unlocatable.

ServerError

createImage_async

public final void createImage_async(AMD_IPixels_createImage __cb,
                                    int sizeX,
                                    int sizeY,
                                    int sizeZ,
                                    int sizeT,
                                    java.util.List<java.lang.Integer> channelList,
                                    PixelsType pixelsType,
                                    java.lang.String name,
                                    java.lang.String description)
                             throws ServerError

Creates the metadata, and only the metadata linked to an Image object. It is beyond the scope of this method to handle updates or changes to the raw pixel data available through RawPixelsStore or to add and link PlaneInfo or StatsInfo objects and/or other Pixels set specific metadata. It is also up to the caller to update the pixels dimensions.

Specified by:

createImage_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

sizeX - The new size across the X-axis.

sizeZ - The new size across the Z-axis.

pixelsType - The pixelsType

description - The description of the new Image.

Throws:

ValidationException - If the channel list is null or of size == 0.

ServerError

getAllEnumerations_async

public final void getAllEnumerations_async(AMD_IPixels_getAllEnumerations __cb,
                                           java.lang.String enumClass)
                                    throws ServerError

Deprecated.

Use ITypes#allEnumerations(string) instead.

Retrieves the exhaustive list of enumerations for a given enumeration class.

Specified by:

getAllEnumerations_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

enumClass - Enumeration class.

Throws:

ServerError

getBitDepth_async

public final void getBitDepth_async(AMD_IPixels_getBitDepth __cb,
                                    PixelsType type)
                             throws ServerError

Bit depth for a given pixel type.

Specified by:

getBitDepth_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

type - Pixels type.

Throws:

ServerError

getEnumeration_async

public final void getEnumeration_async(AMD_IPixels_getEnumeration __cb,
                                       java.lang.String enumClass,
                                       java.lang.String value)
                                throws ServerError

Deprecated.

Use ITypes#getEnumeration(string, string) instead.

Retrieves a particular enumeration for a given enumeration class.

Specified by:

getEnumeration_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

enumClass - Enumeration class.

Throws:

ServerError

loadRndSettings_async

public final void loadRndSettings_async(AMD_IPixels_loadRndSettings __cb,
                                        long renderingSettingsId)
                                 throws ServerError

Loads a specific set of rendering settings. The following objects are pre-linked:

• renderingDef.quantization
• renderingDef.model
• renderingDef.waveRendering
• renderingDef.waveRendering.color
• renderingDef.waveRendering.family
• renderingDef.spatialDomainEnhancement

Specified by:

loadRndSettings_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

renderingSettingsId - Rendering definition id.

Throws:

ValidationException - If no RenderingDef matches the ID renderingDefId.

ServerError

retrieveAllRndSettings_async

public final void retrieveAllRndSettings_async(AMD_IPixels_retrieveAllRndSettings __cb,
                                               long pixId,
                                               long userId)
                                        throws ServerError

Retrieves all the rendering settings for a given pixels set and the passed user. The following objects are pre-linked:

• renderingDef.quantization
• renderingDef.model
• renderingDef.waveRendering
• renderingDef.waveRendering.color
• renderingDef.waveRendering.family
• renderingDef.spatialDomainEnhancement

Specified by:

retrieveAllRndSettings_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

pixId - Pixels id.

Throws:

ServerError

retrievePixDescription_async

public final void retrievePixDescription_async(AMD_IPixels_retrievePixDescription __cb,
                                               long pixId)
                                        throws ServerError

Retrieves the pixels metadata. The following objects are pre-linked:

• pixels.pixelsType
• pixels.pixelsDimensions
• pixels.channels
• pixels.channnels.statsInfo
• pixels.channnels.colorComponent
• pixels.channnels.logicalChannel
• pixels.channnels.logicalChannel.photometricInterpretation

Specified by:

retrievePixDescription_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

pixId - Pixels id.

Throws:

ServerError

retrieveRndSettings_async

public final void retrieveRndSettings_async(AMD_IPixels_retrieveRndSettings __cb,
                                            long pixId)
                                     throws ServerError

Retrieves the rendering settings for a given pixels set and the currently logged in user. If the current user has no RenderingDef, and the user is an administrator, then a RenderingDef may be returned for the owner of the Pixels. This matches the behavior of the Rendering service. The following objects will be pre-linked:

• renderingDef.quantization
• renderingDef.model
• renderingDef.waveRendering
• renderingDef.waveRendering.color
• renderingDef.waveRendering.family
• renderingDef.spatialDomainEnhancement

Specified by:

retrieveRndSettings_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

pixId - Pixels id.

Throws:

ServerError

retrieveRndSettingsFor_async

public final void retrieveRndSettingsFor_async(AMD_IPixels_retrieveRndSettingsFor __cb,
                                               long pixId,
                                               long userId)
                                        throws ServerError

Retrieves the rendering settings for a given pixels set and the passed user. The following objects are pre-linked:

• renderingDef.quantization
• renderingDef.model
• renderingDef.waveRendering
• renderingDef.waveRendering.color
• renderingDef.waveRendering.family
• renderingDef.spatialDomainEnhancement

Specified by:

retrieveRndSettingsFor_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

pixId - Pixels id.

Throws:

ServerError

saveRndSettings_async

public final void saveRndSettings_async(AMD_IPixels_saveRndSettings __cb,
                                        RenderingDef rndSettings)
                                 throws ServerError

Saves the specified rendering settings.

Specified by:

saveRndSettings_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

rndSettings - Rendering settings.

Throws:

ServerError

setChannelGlobalMinMax_async

public final void setChannelGlobalMinMax_async(AMD_IPixels_setChannelGlobalMinMax __cb,
                                               long pixelsId,
                                               int channelIndex,
                                               double min,
                                               double max)
                                        throws ServerError

Sets the channel global (all 2D optical sections corresponding to a particular channel) minimum and maximum for a Pixels set.

Specified by:

setChannelGlobalMinMax_async in interface _IPixelsOperationsNC

Parameters:

__cb - The callback object for the operation.

pixelsId - The source Pixels set id.

min - The channel global minimum.

Throws:

ServerError

___retrievePixDescription

public static Ice.DispatchStatus ___retrievePixDescription(IPixels __obj,
                                                           IceInternal.Incoming __inS,
                                                           Ice.Current __current)

___retrieveRndSettings

public static Ice.DispatchStatus ___retrieveRndSettings(IPixels __obj,
                                                        IceInternal.Incoming __inS,
                                                        Ice.Current __current)

___retrieveRndSettingsFor

public static Ice.DispatchStatus ___retrieveRndSettingsFor(IPixels __obj,
                                                           IceInternal.Incoming __inS,
                                                           Ice.Current __current)

___retrieveAllRndSettings

public static Ice.DispatchStatus ___retrieveAllRndSettings(IPixels __obj,
                                                           IceInternal.Incoming __inS,
                                                           Ice.Current __current)

___loadRndSettings

public static Ice.DispatchStatus ___loadRndSettings(IPixels __obj,
                                                    IceInternal.Incoming __inS,
                                                    Ice.Current __current)

___saveRndSettings

public static Ice.DispatchStatus ___saveRndSettings(IPixels __obj,
                                                    IceInternal.Incoming __inS,
                                                    Ice.Current __current)

___getBitDepth

public static Ice.DispatchStatus ___getBitDepth(IPixels __obj,
                                                IceInternal.Incoming __inS,
                                                Ice.Current __current)

___getEnumeration

public static Ice.DispatchStatus ___getEnumeration(IPixels __obj,
                                                   IceInternal.Incoming __inS,
                                                   Ice.Current __current)

___getAllEnumerations

public static Ice.DispatchStatus ___getAllEnumerations(IPixels __obj,
                                                       IceInternal.Incoming __inS,
                                                       Ice.Current __current)

___copyAndResizePixels

public static Ice.DispatchStatus ___copyAndResizePixels(IPixels __obj,
                                                        IceInternal.Incoming __inS,
                                                        Ice.Current __current)

___copyAndResizeImage

public static Ice.DispatchStatus ___copyAndResizeImage(IPixels __obj,
                                                       IceInternal.Incoming __inS,
                                                       Ice.Current __current)

___createImage

public static Ice.DispatchStatus ___createImage(IPixels __obj,
                                                IceInternal.Incoming __inS,
                                                Ice.Current __current)

___setChannelGlobalMinMax

public static Ice.DispatchStatus ___setChannelGlobalMinMax(IPixels __obj,
                                                           IceInternal.Incoming __inS,
                                                           Ice.Current __current)

__dispatch

public Ice.DispatchStatus __dispatch(IceInternal.Incoming in,
                                     Ice.Current __current)

Specified by:

__dispatch in interface Ice.Object

Overrides:

__dispatch in class Ice.ObjectImpl

__writeImpl

protected void __writeImpl(IceInternal.BasicStream __os)

Overrides:

__writeImpl in class Ice.ObjectImpl

__readImpl

protected void __readImpl(IceInternal.BasicStream __is)

Overrides:

__readImpl in class Ice.ObjectImpl