omero.api

Interface _IRoiOperations

All Superinterfaces:

_ServiceInterfaceOperations

All Known Subinterfaces:

IRoi

All Known Implementing Classes:

_IRoiDisp, _IRoiTie, RoiI

public interface _IRoiOperations
extends _ServiceInterfaceOperations

Interface for working with regions of interest.

Method Summary

Modifier and Type	Method and Description
void	findByImage_async(AMD_IRoi_findByImage __cb, long imageId, RoiOptions opts, Ice.Current __current) Deprecated. IROI is deprecated.
void	findByPlane_async(AMD_IRoi_findByPlane __cb, long imageId, int z, int t, RoiOptions opts, Ice.Current __current) Deprecated. IROI is deprecated.
void	findByRoi_async(AMD_IRoi_findByRoi __cb, long roiId, RoiOptions opts, Ice.Current __current) Deprecated. IROI is deprecated.
void	getMeasuredRois_async(AMD_IRoi_getMeasuredRois __cb, long imageId, long annotationId, RoiOptions opts, Ice.Current __current) Deprecated. IROI is deprecated.
void	getMeasuredRoisMap_async(AMD_IRoi_getMeasuredRoisMap __cb, long imageId, java.util.List<java.lang.Long> annotationIds, RoiOptions opts, Ice.Current __current) Deprecated. IROI is deprecated.
void	getPoints_async(AMD_IRoi_getPoints __cb, long shapeId, Ice.Current __current) Deprecated. IROI is deprecated.
void	getRoiMeasurements_async(AMD_IRoi_getRoiMeasurements __cb, long imageId, RoiOptions opts, Ice.Current __current) Deprecated. IROI is deprecated.
void	getRoiStats_async(AMD_IRoi_getRoiStats __cb, long roiId, Ice.Current __current) Deprecated. IROI is deprecated.
void	getShapeStats_async(AMD_IRoi_getShapeStats __cb, long shapeId, Ice.Current __current) Deprecated. IROI is deprecated.
void	getShapeStatsList_async(AMD_IRoi_getShapeStatsList __cb, java.util.List<java.lang.Long> shapeIdList, Ice.Current __current) Deprecated. IROI is deprecated.
void	getShapeStatsRestricted_async(AMD_IRoi_getShapeStatsRestricted __cb, java.util.List<java.lang.Long> shapeIdList, int zForUnattached, int tForUnattached, int[] channels, Ice.Current __current) Deprecated. IROI is deprecated.
void	getTable_async(AMD_IRoi_getTable __cb, long annotationId, Ice.Current __current) Deprecated. IROI is deprecated.
void	uploadMask_async(AMD_IRoi_uploadMask __cb, long roiId, int z, int t, byte[] bytes, Ice.Current __current) Deprecated. IROI is deprecated.

Method Detail

findByRoi_async

void findByRoi_async(AMD_IRoi_findByRoi __cb,
                     long roiId,
                     RoiOptions opts,
                     Ice.Current __current)
              throws ServerError

Deprecated. IROI is deprecated.

Returns a RoiResult with a single Roi member. Shape linkages are properly created. All Shapes are loaded, as is the Pixels and Image object. TODO: Annotations?

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

findByImage_async

void findByImage_async(AMD_IRoi_findByImage __cb,
                       long imageId,
                       RoiOptions opts,
                       Ice.Current __current)
                throws ServerError

Deprecated. IROI is deprecated.

Returns all the Rois in an Image, indexed via Shape. Loads Rois as findByRoi.

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

findByPlane_async

void findByPlane_async(AMD_IRoi_findByPlane __cb,
                       long imageId,
                       int z,
                       int t,
                       RoiOptions opts,
                       Ice.Current __current)
                throws ServerError

Deprecated. IROI is deprecated.

Returns all the Rois on the given plane, indexed via Shape. Loads Rois as findByRoi.

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

getPoints_async

void getPoints_async(AMD_IRoi_getPoints __cb,
                     long shapeId,
                     Ice.Current __current)
              throws ServerError

Deprecated. IROI is deprecated.

Calculate the points contained within a given shape

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

getRoiStats_async

void getRoiStats_async(AMD_IRoi_getRoiStats __cb,
                       long roiId,
                       Ice.Current __current)
                throws ServerError

Deprecated. IROI is deprecated.

Calculate stats for all the shapes within the given Roi.

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

getShapeStats_async

void getShapeStats_async(AMD_IRoi_getShapeStats __cb,
                         long shapeId,
                         Ice.Current __current)
                  throws ServerError

Deprecated. IROI is deprecated.

Calculate the stats for the points within the given Shape.

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

getShapeStatsList_async

void getShapeStatsList_async(AMD_IRoi_getShapeStatsList __cb,
                             java.util.List<java.lang.Long> shapeIdList,
                             Ice.Current __current)
                      throws ServerError

Deprecated. IROI is deprecated.

Calculate the stats for the points within the given Shapes.

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

getShapeStatsRestricted_async

void getShapeStatsRestricted_async(AMD_IRoi_getShapeStatsRestricted __cb,
                                   java.util.List<java.lang.Long> shapeIdList,
                                   int zForUnattached,
                                   int tForUnattached,
                                   int[] channels,
                                   Ice.Current __current)
                            throws ServerError

Deprecated. IROI is deprecated.

Calculate the stats for the points within the given Shapes. Varies to the above in the following ways: - does not allow tiled images - shapes have to be all belonging to the same image - unattached z/t use the fallback parameters zForUnattached/tForUnattached that is to say there is never more than 1 z/t combination queried - if channel list is given, only the channels in that list are iterated over - does not request data from reader on each iteration

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

getRoiMeasurements_async

void getRoiMeasurements_async(AMD_IRoi_getRoiMeasurements __cb,
                              long imageId,
                              RoiOptions opts,
                              Ice.Current __current)
                       throws ServerError

Deprecated. IROI is deprecated.

Returns a list of FileAnnotation instances with the namespace openmicroscopy.org/measurements which are attached to the Plate containing the given image AND which are attached to at least one Roi

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

getMeasuredRois_async

void getMeasuredRois_async(AMD_IRoi_getMeasuredRois __cb,
                           long imageId,
                           long annotationId,
                           RoiOptions opts,
                           Ice.Current __current)
                    throws ServerError

Deprecated. IROI is deprecated.

Loads the ROIs which are linked to by the given FileAnnotation id for the given image.

Parameters:

__cb - The callback object for the operation.

annotationId - if -1, logic is identical to findByImage(imageId, opts)

__current - The Current object for the invocation.

Throws:

ServerError

getMeasuredRoisMap_async

void getMeasuredRoisMap_async(AMD_IRoi_getMeasuredRoisMap __cb,
                              long imageId,
                              java.util.List<java.lang.Long> annotationIds,
                              RoiOptions opts,
                              Ice.Current __current)
                       throws ServerError

Deprecated. IROI is deprecated.

Returns a map from FileAnnotation ids to RoiResult instances. Logic is identical to getMeasuredRois, but Roi data will not be duplicated. (i.e. the objects are referentially identical)

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

getTable_async

void getTable_async(AMD_IRoi_getTable __cb,
                    long annotationId,
                    Ice.Current __current)
             throws ServerError

Deprecated. IROI is deprecated.

Returns the OMERO.tables service via the FileAnnotation id returned by getImageMeasurements.

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError

uploadMask_async

void uploadMask_async(AMD_IRoi_uploadMask __cb,
                      long roiId,
                      int z,
                      int t,
                      byte[] bytes,
                      Ice.Current __current)
               throws ServerError

Deprecated. IROI is deprecated.

Parameters:

__cb - The callback object for the operation.

__current - The Current object for the invocation.

Throws:

ServerError