omero.api

Class _IRoiDisp

java.lang.Object

Ice.ObjectImpl

omero.api._IRoiDisp

All Implemented Interfaces:

Ice.Object, java.io.Serializable, java.lang.Cloneable, _IRoiOperations, _IRoiOperationsNC, _ServiceInterfaceOperations, _ServiceInterfaceOperationsNC, IRoi, ServiceInterface

Direct Known Subclasses:

_IRoiTie

public abstract class _IRoiDisp
extends Ice.ObjectImpl
implements IRoi

Interface for working with regions of interest.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String[]	__ids
static long	serialVersionUID

Fields inherited from interface omero.api.IRoi

ice_staticId

Constructor Summary

Constructors

Constructor and Description
_IRoiDisp()

Method Summary

Modifier and Type	Method and Description
static Ice.DispatchStatus	___findByImage(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___findByPlane(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___findByRoi(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getMeasuredRois(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getMeasuredRoisMap(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getPoints(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getRoiMeasurements(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getRoiStats(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getShapeStats(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getShapeStatsList(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getShapeStatsRestricted(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___getTable(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___uploadMask(IRoi __obj, IceInternal.Incoming __inS, Ice.Current __current)
Ice.DispatchStatus	__dispatch(IceInternal.Incoming in, Ice.Current __current)
protected void	__readImpl(IceInternal.BasicStream __is)
protected void	__writeImpl(IceInternal.BasicStream __os)
void	findByImage_async(AMD_IRoi_findByImage __cb, long imageId, RoiOptions opts) Deprecated. IROI is deprecated.
void	findByPlane_async(AMD_IRoi_findByPlane __cb, long imageId, int z, int t, RoiOptions opts) Deprecated. IROI is deprecated.
void	findByRoi_async(AMD_IRoi_findByRoi __cb, long roiId, RoiOptions opts) Deprecated. IROI is deprecated.
void	getMeasuredRois_async(AMD_IRoi_getMeasuredRois __cb, long imageId, long annotationId, RoiOptions opts) Deprecated. IROI is deprecated.
void	getMeasuredRoisMap_async(AMD_IRoi_getMeasuredRoisMap __cb, long imageId, java.util.List<java.lang.Long> annotationIds, RoiOptions opts) Deprecated. IROI is deprecated.
void	getPoints_async(AMD_IRoi_getPoints __cb, long shapeId) Deprecated. IROI is deprecated.
void	getRoiMeasurements_async(AMD_IRoi_getRoiMeasurements __cb, long imageId, RoiOptions opts) Deprecated. IROI is deprecated.
void	getRoiStats_async(AMD_IRoi_getRoiStats __cb, long roiId) Deprecated. IROI is deprecated.
void	getShapeStats_async(AMD_IRoi_getShapeStats __cb, long shapeId) Deprecated. IROI is deprecated.
void	getShapeStatsList_async(AMD_IRoi_getShapeStatsList __cb, java.util.List<java.lang.Long> shapeIdList) Deprecated. IROI is deprecated.
void	getShapeStatsRestricted_async(AMD_IRoi_getShapeStatsRestricted __cb, java.util.List<java.lang.Long> shapeIdList, int zForUnattached, int tForUnattached, int[] channels) Deprecated. IROI is deprecated.
void	getTable_async(AMD_IRoi_getTable __cb, long annotationId) Deprecated. IROI is deprecated.
protected void	ice_copyStateFrom(Ice.Object __obj)
java.lang.String	ice_id()
java.lang.String	ice_id(Ice.Current __current)
java.lang.String[]	ice_ids()
java.lang.String[]	ice_ids(Ice.Current __current)
boolean	ice_isA(java.lang.String s)
boolean	ice_isA(java.lang.String s, Ice.Current __current)
static java.lang.String	ice_staticId()
void	uploadMask_async(AMD_IRoi_uploadMask __cb, long roiId, int z, int t, byte[] bytes) Deprecated. IROI is deprecated.

Methods inherited from class Ice.ObjectImpl

___ice_id, ___ice_ids, ___ice_isA, ___ice_ping, __checkMode, __read, __read, __readImpl, __write, __write, __writeImpl, clone, ice_dispatch, ice_dispatch, ice_operationAttributes, ice_ping, ice_ping, ice_postUnmarshal, ice_preMarshal

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface omero.api._IRoiOperations

findByImage_async, findByPlane_async, findByRoi_async, getMeasuredRois_async, getMeasuredRoisMap_async, getPoints_async, getRoiMeasurements_async, getRoiStats_async, getShapeStats_async, getShapeStatsList_async, getShapeStatsRestricted_async, getTable_async, uploadMask_async

Methods inherited from interface Ice.Object

__read, __read, __write, __write, clone, ice_dispatch, ice_dispatch, ice_operationAttributes, ice_ping, ice_ping, ice_postUnmarshal, ice_preMarshal

Field Detail

__ids

public static final java.lang.String[] __ids

serialVersionUID

public static final long serialVersionUID

See Also:

Constant Field Values

Constructor Detail

_IRoiDisp

public _IRoiDisp()

Method Detail

ice_copyStateFrom

protected void ice_copyStateFrom(Ice.Object __obj)
                          throws java.lang.CloneNotSupportedException

Throws:

java.lang.CloneNotSupportedException

ice_isA

public boolean ice_isA(java.lang.String s)

Specified by:

ice_isA in interface Ice.Object

Overrides:

ice_isA in class Ice.ObjectImpl

ice_isA

public boolean ice_isA(java.lang.String s,
                       Ice.Current __current)

Specified by:

ice_isA in interface Ice.Object

Overrides:

ice_isA in class Ice.ObjectImpl

ice_ids

public java.lang.String[] ice_ids()

Specified by:

ice_ids in interface Ice.Object

Overrides:

ice_ids in class Ice.ObjectImpl

ice_ids

public java.lang.String[] ice_ids(Ice.Current __current)

Specified by:

ice_ids in interface Ice.Object

Overrides:

ice_ids in class Ice.ObjectImpl

ice_id

public java.lang.String ice_id()

Specified by:

ice_id in interface Ice.Object

Overrides:

ice_id in class Ice.ObjectImpl

ice_id

public java.lang.String ice_id(Ice.Current __current)

Specified by:

ice_id in interface Ice.Object

Overrides:

ice_id in class Ice.ObjectImpl

ice_staticId

public static java.lang.String ice_staticId()

findByImage_async

public final void findByImage_async(AMD_IRoi_findByImage __cb,
                                    long imageId,
                                    RoiOptions opts)
                             throws ServerError

Deprecated. IROI is deprecated.

Returns all the Rois in an Image, indexed via Shape. Loads Rois as findByRoi.

Specified by:

findByImage_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

findByPlane_async

public final void findByPlane_async(AMD_IRoi_findByPlane __cb,
                                    long imageId,
                                    int z,
                                    int t,
                                    RoiOptions opts)
                             throws ServerError

Deprecated. IROI is deprecated.

Returns all the Rois on the given plane, indexed via Shape. Loads Rois as findByRoi.

Specified by:

findByPlane_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

findByRoi_async

public final void findByRoi_async(AMD_IRoi_findByRoi __cb,
                                  long roiId,
                                  RoiOptions opts)
                           throws ServerError

Deprecated. IROI is deprecated.

Returns a RoiResult with a single Roi member. Shape linkages are properly created. All Shapes are loaded, as is the Pixels and Image object. TODO: Annotations?

Specified by:

findByRoi_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getMeasuredRois_async

public final void getMeasuredRois_async(AMD_IRoi_getMeasuredRois __cb,
                                        long imageId,
                                        long annotationId,
                                        RoiOptions opts)
                                 throws ServerError

Deprecated. IROI is deprecated.

Loads the ROIs which are linked to by the given FileAnnotation id for the given image.

Specified by:

getMeasuredRois_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

annotationId - if -1, logic is identical to findByImage(imageId, opts)

Throws:

ServerError

getMeasuredRoisMap_async

public final void getMeasuredRoisMap_async(AMD_IRoi_getMeasuredRoisMap __cb,
                                           long imageId,
                                           java.util.List<java.lang.Long> annotationIds,
                                           RoiOptions opts)
                                    throws ServerError

Deprecated. IROI is deprecated.

Returns a map from FileAnnotation ids to RoiResult instances. Logic is identical to getMeasuredRois, but Roi data will not be duplicated. (i.e. the objects are referentially identical)

Specified by:

getMeasuredRoisMap_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getPoints_async

public final void getPoints_async(AMD_IRoi_getPoints __cb,
                                  long shapeId)
                           throws ServerError

Deprecated. IROI is deprecated.

Calculate the points contained within a given shape

Specified by:

getPoints_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getRoiMeasurements_async

public final void getRoiMeasurements_async(AMD_IRoi_getRoiMeasurements __cb,
                                           long imageId,
                                           RoiOptions opts)
                                    throws ServerError

Deprecated. IROI is deprecated.

Returns a list of FileAnnotation instances with the namespace openmicroscopy.org/measurements which are attached to the Plate containing the given image AND which are attached to at least one Roi

Specified by:

getRoiMeasurements_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getRoiStats_async

public final void getRoiStats_async(AMD_IRoi_getRoiStats __cb,
                                    long roiId)
                             throws ServerError

Deprecated. IROI is deprecated.

Calculate stats for all the shapes within the given Roi.

Specified by:

getRoiStats_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getShapeStats_async

public final void getShapeStats_async(AMD_IRoi_getShapeStats __cb,
                                      long shapeId)
                               throws ServerError

Deprecated. IROI is deprecated.

Calculate the stats for the points within the given Shape.

Specified by:

getShapeStats_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getShapeStatsList_async

public final void getShapeStatsList_async(AMD_IRoi_getShapeStatsList __cb,
                                          java.util.List<java.lang.Long> shapeIdList)
                                   throws ServerError

Deprecated. IROI is deprecated.

Calculate the stats for the points within the given Shapes.

Specified by:

getShapeStatsList_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getShapeStatsRestricted_async

public final void getShapeStatsRestricted_async(AMD_IRoi_getShapeStatsRestricted __cb,
                                                java.util.List<java.lang.Long> shapeIdList,
                                                int zForUnattached,
                                                int tForUnattached,
                                                int[] channels)
                                         throws ServerError

Deprecated. IROI is deprecated.

Calculate the stats for the points within the given Shapes. Varies to the above in the following ways: - does not allow tiled images - shapes have to be all belonging to the same image - unattached z/t use the fallback parameters zForUnattached/tForUnattached that is to say there is never more than 1 z/t combination queried - if channel list is given, only the channels in that list are iterated over - does not request data from reader on each iteration

Specified by:

getShapeStatsRestricted_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

getTable_async

public final void getTable_async(AMD_IRoi_getTable __cb,
                                 long annotationId)
                          throws ServerError

Deprecated. IROI is deprecated.

Returns the OMERO.tables service via the FileAnnotation id returned by getImageMeasurements.

Specified by:

getTable_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

uploadMask_async

public final void uploadMask_async(AMD_IRoi_uploadMask __cb,
                                   long roiId,
                                   int z,
                                   int t,
                                   byte[] bytes)
                            throws ServerError

Deprecated. IROI is deprecated.

Specified by:

uploadMask_async in interface _IRoiOperationsNC

Parameters:

__cb - The callback object for the operation.

Throws:

ServerError

___findByRoi

public static Ice.DispatchStatus ___findByRoi(IRoi __obj,
                                              IceInternal.Incoming __inS,
                                              Ice.Current __current)

___findByImage

public static Ice.DispatchStatus ___findByImage(IRoi __obj,
                                                IceInternal.Incoming __inS,
                                                Ice.Current __current)

___findByPlane

public static Ice.DispatchStatus ___findByPlane(IRoi __obj,
                                                IceInternal.Incoming __inS,
                                                Ice.Current __current)

___getPoints

public static Ice.DispatchStatus ___getPoints(IRoi __obj,
                                              IceInternal.Incoming __inS,
                                              Ice.Current __current)

___getRoiStats

public static Ice.DispatchStatus ___getRoiStats(IRoi __obj,
                                                IceInternal.Incoming __inS,
                                                Ice.Current __current)

___getShapeStats

public static Ice.DispatchStatus ___getShapeStats(IRoi __obj,
                                                  IceInternal.Incoming __inS,
                                                  Ice.Current __current)

___getShapeStatsList

public static Ice.DispatchStatus ___getShapeStatsList(IRoi __obj,
                                                      IceInternal.Incoming __inS,
                                                      Ice.Current __current)

___getShapeStatsRestricted

public static Ice.DispatchStatus ___getShapeStatsRestricted(IRoi __obj,
                                                            IceInternal.Incoming __inS,
                                                            Ice.Current __current)

___getRoiMeasurements

public static Ice.DispatchStatus ___getRoiMeasurements(IRoi __obj,
                                                       IceInternal.Incoming __inS,
                                                       Ice.Current __current)

___getMeasuredRois

public static Ice.DispatchStatus ___getMeasuredRois(IRoi __obj,
                                                    IceInternal.Incoming __inS,
                                                    Ice.Current __current)

___getMeasuredRoisMap

public static Ice.DispatchStatus ___getMeasuredRoisMap(IRoi __obj,
                                                       IceInternal.Incoming __inS,
                                                       Ice.Current __current)

___getTable

public static Ice.DispatchStatus ___getTable(IRoi __obj,
                                             IceInternal.Incoming __inS,
                                             Ice.Current __current)

___uploadMask

public static Ice.DispatchStatus ___uploadMask(IRoi __obj,
                                               IceInternal.Incoming __inS,
                                               Ice.Current __current)

__dispatch

public Ice.DispatchStatus __dispatch(IceInternal.Incoming in,
                                     Ice.Current __current)

Specified by:

__dispatch in interface Ice.Object

Overrides:

__dispatch in class Ice.ObjectImpl

__writeImpl

protected void __writeImpl(IceInternal.BasicStream __os)

Overrides:

__writeImpl in class Ice.ObjectImpl

__readImpl

protected void __readImpl(IceInternal.BasicStream __is)

Overrides:

__readImpl in class Ice.ObjectImpl