MetamorphReader

This page lists supported metadata fields for the Bio-Formats Metamorph STK format reader.

These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.

Of the 476 fields documented in the metadata summary table:

• The file format itself supports 58 of them (12%).

• Of those, Bio-Formats fully or partially converts 58 (100%).

Supported fields

These fields are fully supported by the Bio-Formats Metamorph STK format reader:

• Channel : ID

• Channel : LightSourceSettingsID

• Channel : LightSourceSettingsWavelength

• Channel : Name

• Channel : SamplesPerPixel

• Detector : ID

• Detector : Type

• DetectorSettings : Binning

• DetectorSettings : Gain

• DetectorSettings : ID

• DetectorSettings : ReadOutRate

• Image : AcquisitionDate

• Image : Description

• Image : ID

• Image : InstrumentRef

• Image : Name

• ImagingEnvironment : Temperature

• Instrument : ID

• Laser : ID

• Laser : LaserMedium

• Laser : Type

• Objective : ID

• Objective : LensNA

• ObjectiveSettings : ID

• ObjectiveSettings : RefractiveIndex

• Pixels : BigEndian

• Pixels : DimensionOrder

• Pixels : ID

• Pixels : Interleaved

• Pixels : PhysicalSizeX

• Pixels : PhysicalSizeY

• Pixels : PhysicalSizeZ

• Pixels : SignificantBits

• Pixels : SizeC

• Pixels : SizeT

• Pixels : SizeX

• Pixels : SizeY

• Pixels : SizeZ

• Pixels : Type

• Plane : DeltaT

• Plane : ExposureTime

• Plane : PositionX

• Plane : PositionY

• Plane : PositionZ

• Plane : TheC

• Plane : TheT

• Plane : TheZ

• Plate : ColumnNamingConvention

• Plate : Columns

• Plate : ID

• Plate : RowNamingConvention

• Plate : Rows

• Well : Column

• Well : ID

• Well : Row

• WellSample : ID

• WellSample : ImageRef

• WellSample : Index

Total supported: 58

Total unknown or missing: 418