BaseZeissReader¶
This page lists supported metadata fields for the Bio-Formats BaseZeissReader.
These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.
- Of the 476 fields documented in the metadata summary table:
- The file format itself supports 84 of them (17%).
- Of those, Bio-Formats fully or partially converts 84 (100%).
Supported fields¶
- These fields are fully supported by the Bio-Formats BaseZeissReader:
- Channel : Color
- Channel : EmissionWavelength
- Channel : ExcitationWavelength
- Channel : ID
- Channel : Name
- Channel : SamplesPerPixel
- Detector : ID
- Detector : Type
- DetectorSettings : Gain
- DetectorSettings : ID
- DetectorSettings : Offset
- Ellipse : ID
- Ellipse : RadiusX
- Ellipse : RadiusY
- Ellipse : Text
- Ellipse : X
- Ellipse : Y
- Experimenter : FirstName
- Experimenter : ID
- Experimenter : Institution
- Experimenter : LastName
- Image : AcquisitionDate
- Image : Description
- Image : ID
- Image : InstrumentRef
- Image : Name
- Image : ROIRef
- Instrument : ID
- Label : ID
- Label : Text
- Label : X
- Label : Y
- Line : ID
- Line : Text
- Line : X1
- Line : X2
- Line : Y1
- Line : Y2
- Objective : Correction
- Objective : ID
- Objective : Immersion
- Objective : LensNA
- Objective : NominalMagnification
- Objective : WorkingDistance
- ObjectiveSettings : ID
- Pixels : BigEndian
- Pixels : DimensionOrder
- Pixels : ID
- Pixels : Interleaved
- Pixels : PhysicalSizeX
- Pixels : PhysicalSizeY
- Pixels : PhysicalSizeZ
- Pixels : SignificantBits
- Pixels : SizeC
- Pixels : SizeT
- Pixels : SizeX
- Pixels : SizeY
- Pixels : SizeZ
- Pixels : Type
- Plane : DeltaT
- Plane : ExposureTime
- Plane : PositionX
- Plane : PositionY
- Plane : TheC
- Plane : TheT
- Plane : TheZ
- Point : ID
- Point : Text
- Point : X
- Point : Y
- Polygon : ID
- Polygon : Points
- Polygon : Text
- Polyline : ID
- Polyline : Points
- Polyline : Text
- ROI : ID
- ROI : Name
- Rectangle : Height
- Rectangle : ID
- Rectangle : Text
- Rectangle : Width
- Rectangle : X
- Rectangle : Y
Total supported: 84
Total unknown or missing: 392
