ome.logic

Class PixelsImpl

java.lang.Object

ome.logic.AbstractLevel2Service

ome.logic.PixelsImpl

All Implemented Interfaces:

ome.api.IPixels, ome.api.ServiceInterface, ome.system.SelfConfigurableService

@Transactional(readOnly=true)
public class PixelsImpl
extends AbstractLevel2Service
implements ome.api.IPixels

implementation of the Pixels service interface.

Since:

OME2.2

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	RENDERING_DEF_QUERY_PREFIX Standard rendering definition HQL query prefix

Fields inherited from class ome.logic.AbstractLevel2Service

iQuery, iUpdate, metadata, queryFactory, readOnlyStatus, sec

Constructor Summary

Constructors

Constructor and Description
PixelsImpl()

Method Summary

Modifier and Type	Method and Description
java.lang.Long	copyAndResizeImage(long imageId, java.lang.Integer sizeX, java.lang.Integer sizeY, java.lang.Integer sizeZ, java.lang.Integer sizeT, java.util.List<java.lang.Integer> channelList, java.lang.String name, boolean copyStats)
java.lang.Long	copyAndResizePixels(long pixelsId, java.lang.Integer sizeX, java.lang.Integer sizeY, java.lang.Integer sizeZ, java.lang.Integer sizeT, java.util.List<java.lang.Integer> channelList, java.lang.String methodology, boolean copyStats)
java.lang.Long	createImage(int sizeX, int sizeY, int sizeZ, int sizeT, java.util.List<java.lang.Integer> channelList, ome.model.enums.PixelsType pixelsType, java.lang.String name, java.lang.String description)
<T extends ome.model.IObject> java.util.List<T>	getAllEnumerations(java.lang.Class<T> klass) Deprecated.
int	getBitDepth(ome.model.enums.PixelsType pixelsType)
<T extends ome.model.IObject> T	getEnumeration(java.lang.Class<T> klass, java.lang.String value) Deprecated.
java.lang.Class<? extends ome.api.ServiceInterface>	getServiceInterface() Returns the interface this implementation is for.
ome.model.display.RenderingDef	loadRndSettings(long renderingDefId)
java.util.List<ome.model.IObject>	retrieveAllRndSettings(long pixId, long userId)
ome.model.core.Pixels	retrievePixDescription(long pixId)
ome.model.display.RenderingDef	retrieveRndSettings(long pixId)
ome.model.display.RenderingDef	retrieveRndSettingsFor(long pixId, long userId)
void	saveRndSettings(ome.model.display.RenderingDef rndSettings)
void	setChannelGlobalMinMax(long pixelsId, int channelIndex, double min, double max)

Methods inherited from class ome.logic.AbstractLevel2Service

getBeanHelper, getExtendedMetadata, getQueryFactory, getSecuritySystem, selfConfigure, setExtendedMetadata, setQueryFactory, setQueryService, setReadOnlyStatus, setSecuritySystem, setUpdateService

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

RENDERING_DEF_QUERY_PREFIX

public static final java.lang.String RENDERING_DEF_QUERY_PREFIX

Standard rendering definition HQL query prefix

See Also:

Constant Field Values

Constructor Detail

PixelsImpl

public PixelsImpl()

Method Detail

getServiceInterface

public java.lang.Class<? extends ome.api.ServiceInterface> getServiceInterface()

Returns the interface this implementation is for.

Specified by:

getServiceInterface in interface ome.system.SelfConfigurableService

See Also:

SelfConfigurableService.getServiceInterface()

retrievePixDescription

public ome.model.core.Pixels retrievePixDescription(long pixId)

Specified by:

retrievePixDescription in interface ome.api.IPixels

retrieveRndSettingsFor

public ome.model.display.RenderingDef retrieveRndSettingsFor(long pixId,
                                                             long userId)

Specified by:

retrieveRndSettingsFor in interface ome.api.IPixels

retrieveAllRndSettings

public java.util.List<ome.model.IObject> retrieveAllRndSettings(long pixId,
                                                                long userId)

Specified by:

retrieveAllRndSettings in interface ome.api.IPixels

retrieveRndSettings

public ome.model.display.RenderingDef retrieveRndSettings(long pixId)

Specified by:

retrieveRndSettings in interface ome.api.IPixels

loadRndSettings

public ome.model.display.RenderingDef loadRndSettings(long renderingDefId)

Specified by:

loadRndSettings in interface ome.api.IPixels

copyAndResizePixels

@Transactional(readOnly=false)
public java.lang.Long copyAndResizePixels(long pixelsId,
                                                                         java.lang.Integer sizeX,
                                                                         java.lang.Integer sizeY,
                                                                         java.lang.Integer sizeZ,
                                                                         java.lang.Integer sizeT,
                                                                         java.util.List<java.lang.Integer> channelList,
                                                                         java.lang.String methodology,
                                                                         boolean copyStats)

Specified by:

copyAndResizePixels in interface ome.api.IPixels

copyAndResizeImage

@Transactional(readOnly=false)
public java.lang.Long copyAndResizeImage(long imageId,
                                                                        java.lang.Integer sizeX,
                                                                        java.lang.Integer sizeY,
                                                                        java.lang.Integer sizeZ,
                                                                        java.lang.Integer sizeT,
                                                                        java.util.List<java.lang.Integer> channelList,
                                                                        java.lang.String name,
                                                                        boolean copyStats)

Specified by:

copyAndResizeImage in interface ome.api.IPixels

createImage

@Transactional(readOnly=false)
public java.lang.Long createImage(int sizeX,
                                                                 int sizeY,
                                                                 int sizeZ,
                                                                 int sizeT,
                                                                 java.util.List<java.lang.Integer> channelList,
                                                                 ome.model.enums.PixelsType pixelsType,
                                                                 java.lang.String name,
                                                                 java.lang.String description)

Specified by:

createImage in interface ome.api.IPixels

setChannelGlobalMinMax

@Transactional(readOnly=false)
public void setChannelGlobalMinMax(long pixelsId,
                                                                  int channelIndex,
                                                                  double min,
                                                                  double max)

Specified by:

setChannelGlobalMinMax in interface ome.api.IPixels

saveRndSettings

@Transactional(readOnly=false)
public void saveRndSettings(ome.model.display.RenderingDef rndSettings)

Specified by:

saveRndSettings in interface ome.api.IPixels

getBitDepth

public int getBitDepth(ome.model.enums.PixelsType pixelsType)

Specified by:

getBitDepth in interface ome.api.IPixels

getEnumeration

@Deprecated
public <T extends ome.model.IObject> T getEnumeration(java.lang.Class<T> klass,
                                                                  java.lang.String value)

Deprecated.

Specified by:

getEnumeration in interface ome.api.IPixels

getAllEnumerations

@Deprecated
public <T extends ome.model.IObject> java.util.List<T> getAllEnumerations(java.lang.Class<T> klass)

Deprecated.

Specified by:

getAllEnumerations in interface ome.api.IPixels