Reagent (omero-model 5.6.7 API)

java.lang.Object
- ome.model.screen.Reagent

All Implemented Interfaces:

java.io.Serializable, IAnnotated, IMutable, IObject, Filterable
```
@Entity
 @Indexed(index="FullText")
 @ClassBridge(name="details",
             impl=DetailsFieldBridge.class,
             index=UN_TOKENIZED,
             store=NO)
public class Reagent
extends java.lang.Object
implements java.io.Serializable, IObject, IMutable, IAnnotated
```
These filter definitions are used by the security system to eliminate non-readable objects from queries. The regular user does not need to worry about them, as they will be injected directly into the SQL (not HQL)

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class Reagent.Details

Nested Classes
Modifier and Type	Class and Description
`static class`	`Reagent.Details`

Field Summary

Fields
Modifier and Type	Field and Description
`protected java.util.Map<java.lang.String,java.lang.Object>`	`_dynamicFields`
`protected boolean`	`_loaded`
`protected java.util.Set<ReagentAnnotationLink>`	`annotationLinks`
`static java.lang.String`	`ANNOTATIONLINKS`
`static java.lang.String`	`ANNOTATIONLINKSCOUNTPEROWNER`
`protected java.lang.String`	`description`
`static java.lang.String`	`DESCRIPTION`
`protected Details`	`details`
`static java.lang.String`	`DETAILS`
`static java.lang.String`	`EVENT_FILTER`
`static java.lang.String`	`EVENT_FILTER_ANNOTATIONLINKS`
`static java.lang.String`	`EVENT_FILTER_WELLLINKS`
`static java.util.Set<java.lang.String>`	`FIELDS`
`static java.lang.String`	`GROUP_FILTER`
`static java.lang.String`	`GROUP_FILTER_ANNOTATIONLINKS`
`static java.lang.String`	`GROUP_FILTER_WELLLINKS`
`protected java.lang.Long`	`id`
`static java.lang.String`	`ID`
`protected java.lang.String`	`name`
`static java.lang.String`	`NAME`
`static java.lang.String`	`OWNER_FILTER`
`static java.lang.String`	`OWNER_FILTER_ANNOTATIONLINKS`
`static java.lang.String`	`OWNER_FILTER_WELLLINKS`
`static java.lang.String`	`PERMS_FILTER`
`static java.lang.String`	`PERMS_FILTER_ANNOTATIONLINKS`
`static java.lang.String`	`PERMS_FILTER_WELLLINKS`
`protected java.lang.String`	`reagentIdentifier`
`static java.lang.String`	`REAGENTIDENTIFIER`
`protected Screen`	`screen`
`static java.lang.String`	`SCREEN`
`protected java.lang.Integer`	`version`
`static java.lang.String`	`VERSION`
`protected java.util.Set<WellReagentLink>`	`wellLinks`
`static java.lang.String`	`WELLLINKS`
`static java.lang.String`	`WELLLINKSCOUNTPEROWNER`

Constructor Summary

Constructors
Modifier	Constructor and Description
	`Reagent()`
`protected`	`Reagent(java.lang.Long id)`
	`Reagent(java.lang.Long id, boolean loaded)` Main constructor.
	`Reagent(Screen _screen)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`acceptFilter(Filter __filter)`
`void`	`addReagentAnnotationLink(ReagentAnnotationLink target)` use instead of setAnnotationLinks .
`void`	`addReagentAnnotationLink(ReagentAnnotationLink link, boolean bothSides)` Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks, allowing for recursion -- whether or not addReagentAnnotationLink will be called on the addition if it is loaded
`void`	`addReagentAnnotationLinkSet(java.util.Collection<ReagentAnnotationLink> targets)` use like addReagentAnnotationLink.
`void`	`addWellReagentLink(WellReagentLink target)` use instead of setWellLinks .
`void`	`addWellReagentLink(WellReagentLink link, boolean bothSides)` Adds a ome.model.screen.WellReagentLink to wellLinks, allowing for recursion -- whether or not addWellReagentLink will be called on the addition if it is loaded
`void`	`addWellReagentLinkSet(java.util.Collection<WellReagentLink> targets)` use like addWellReagentLink.
`void`	`clearAnnotationLinks()` clears the set.
`void`	`clearWellLinks()` clears the set.
`<E> java.util.List<E>`	`collectAnnotationLinks(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.annotations.ReagentAnnotationLink while collecting the results.
`<E> java.util.List<E>`	`collectWellLinks(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while collecting the results.
`<E> java.util.List<E>`	`eachLinkedAnnotation(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
`<E> java.util.List<E>`	`eachLinkedWell(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.
`protected void`	`errorIfUnloaded()`
`java.util.Set<java.lang.String>`	`fields()` returns a Set of field names that belong to this class
`java.util.Set<ReagentAnnotationLink>`	`findReagentAnnotationLink(Annotation target)` find all ome.model.annotations.ReagentAnnotationLink which have the argument as their child.
`java.util.Set<WellReagentLink>`	`findWellReagentLink(Well target)` find all ome.model.screen.WellReagentLink which have the argument as their parent.
`protected java.util.Set<ReagentAnnotationLink>`	`getAnnotationLinks()` returns annotationLinks .
`java.util.Map<java.lang.Long,java.lang.Long>`	`getAnnotationLinksCountPerOwner()` If fetched, returns the count(*) of ome.model.annotations.ReagentAnnotationLink that a user has.
`java.lang.String`	`getDescription()` Simple field ome.model.screen.Reagent.description (java.lang.String)
`Details`	`getDetails()` The details of this object correspond to low-level system information.
`GraphHolder`	`getGraphHolder()` retrieves the `GraphHolder` for this entity.
`java.lang.Long`	`getId()` The DB unique identifier for this object.
`java.lang.String`	`getName()` Simple field ome.model.screen.Reagent.name (java.lang.String)
`java.lang.String`	`getReagentIdentifier()` Simple field ome.model.screen.Reagent.reagentIdentifier (java.lang.String)
`Screen`	`getScreen()` Many-to-one field ome.model.screen.Reagent.screen (ome.model.screen.Screen)
`java.lang.Integer`	`getVersion()` This version number is controlled by the database for optimisitic locking.
`protected java.util.Set<WellReagentLink>`	`getWellLinks()` returns wellLinks .
`java.util.Map<java.lang.Long,java.lang.Long>`	`getWellLinksCountPerOwner()` If fetched, returns the count(*) of ome.model.screen.WellReagentLink that a user has.
`boolean`	`isLoaded()` transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
`boolean`	`isValid()` calls the class-specific validator for this instance and returns the value from `Validation.isValid()`
`java.util.Iterator<ReagentAnnotationLink>`	`iterateAnnotationLinks()` should be used rather than accessing the annotationLinks set directly.
`java.util.Iterator<WellReagentLink>`	`iterateWellLinks()` should be used rather than accessing the wellLinks set directly.
`ReagentAnnotationLink`	`linkAnnotation(Annotation addition)` Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks .
`java.util.Iterator<Annotation>`	`linkedAnnotationIterator()` provides an iterator over the parent values of the annotationLinks.
`java.util.List<Annotation>`	`linkedAnnotationList()` produces a `List`-copy of the underlying collection.
`java.util.Iterator<Well>`	`linkedWellIterator()` provides an iterator over the child values of the wellLinks.
`java.util.List<Well>`	`linkedWellList()` produces a `List`-copy of the underlying collection.
`WellReagentLink`	`linkWell(Well addition)` Adds a ome.model.screen.WellReagentLink to wellLinks .
`Reagent`	`newInstance()`
`Reagent`	`proxy()`
`void`	`putAt(java.lang.String field, java.lang.Object value)` stores a value in this instance.
`void`	`removeReagentAnnotationLink(ReagentAnnotationLink target)` removes a single element from this set and makes the inverse call on ome.model.annotations.ReagentAnnotationLink
`void`	`removeReagentAnnotationLink(ReagentAnnotationLink link, boolean bothSides)` removes the given ReagentAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkReagent again if loaded.
`void`	`removeReagentAnnotationLinkSet(java.util.Collection<ReagentAnnotationLink> targets)` use like removeReagentAnnotationLink
`void`	`removeWellReagentLink(WellReagentLink target)` removes a single element from this set and makes the inverse call on ome.model.screen.WellReagentLink
`void`	`removeWellReagentLink(WellReagentLink link, boolean bothSides)` removes the given WellReagentLink from wellLinks, allowing for recursion -- whether or not the removal will call unlinkReagent again if loaded.
`void`	`removeWellReagentLinkSet(java.util.Collection<WellReagentLink> targets)` use like removeWellReagentLink
`java.lang.Object`	`retrieve(java.lang.String field)` retrieves a value from this instance.
`protected void`	`setAnnotationLinks(java.util.Set<ReagentAnnotationLink> annotationLinks)` setter for annotationLinks should be avoided.
`protected void`	`setAnnotationLinksCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)`
`void`	`setDescription(java.lang.String description)`
`protected void`	`setDetails(Details details)`
`void`	`setId(java.lang.Long id)` usually unneeded.
`void`	`setName(java.lang.String name)`
`void`	`setReagentIdentifier(java.lang.String reagentIdentifier)`
`void`	`setScreen(Screen screen)`
`void`	`setVersion(java.lang.Integer version)` use with caution.
`protected void`	`setWellLinks(java.util.Set<WellReagentLink> wellLinks)` setter for wellLinks should be avoided.
`protected void`	`setWellLinksCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)`
`int`	`sizeOfAnnotationLinks()` returns the size of annotationLinks.
`int`	`sizeOfWellLinks()` returns the size of wellLinks.
`protected void`	`throwNullCollectionException(java.lang.String propertyName)`
`java.lang.String`	`toString()`
`void`	`unlinkAnnotation(Annotation removal)` unlinks all ome.model.annotations.Annotation instances from this instance.
`void`	`unlinkWell(Well removal)` unlinks all ome.model.screen.Well instances from this instance.
`void`	`unload()` set the loaded field to false, and set all non-ID fields to null.
`java.util.Collection<ReagentAnnotationLink>`	`unmodifiableAnnotationLinks()` Returns an unmodifiable collection-view
`java.util.Collection<WellReagentLink>`	`unmodifiableWellLinks()` Returns an unmodifiable collection-view
`Validation`	`validate()` calls the class-specific validator for this instance and returns the `Validation` object.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - OWNER_FILTER
```
public static final java.lang.String OWNER_FILTER
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER
```
public static final java.lang.String GROUP_FILTER
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER
```
public static final java.lang.String EVENT_FILTER
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER
```
public static final java.lang.String PERMS_FILTER
```
    See Also:
    
    Constant Field Values
  - ID
```
public static final java.lang.String ID
```
    See Also:
    
    Constant Field Values
  - id
```
protected java.lang.Long id
```
  - VERSION
```
public static final java.lang.String VERSION
```
    See Also:
    
    Constant Field Values
  - version
```
protected java.lang.Integer version
```
  - name
```
protected java.lang.String name
```
  - reagentIdentifier
```
protected java.lang.String reagentIdentifier
```
  - screen
```
protected Screen screen
```
  - wellLinks
```
protected java.util.Set<WellReagentLink> wellLinks
```
  - OWNER_FILTER_WELLLINKS
```
public static final java.lang.String OWNER_FILTER_WELLLINKS
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_WELLLINKS
```
public static final java.lang.String GROUP_FILTER_WELLLINKS
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_WELLLINKS
```
public static final java.lang.String EVENT_FILTER_WELLLINKS
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_WELLLINKS
```
public static final java.lang.String PERMS_FILTER_WELLLINKS
```
    See Also:
    
    Constant Field Values
  - annotationLinks
```
protected java.util.Set<ReagentAnnotationLink> annotationLinks
```
  - OWNER_FILTER_ANNOTATIONLINKS
```
public static final java.lang.String OWNER_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_ANNOTATIONLINKS
```
public static final java.lang.String GROUP_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_ANNOTATIONLINKS
```
public static final java.lang.String EVENT_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_ANNOTATIONLINKS
```
public static final java.lang.String PERMS_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - description
```
protected java.lang.String description
```
  - details
```
protected Details details
```
  - NAME
```
public static final java.lang.String NAME
```
    See Also:
    
    Constant Field Values
  - REAGENTIDENTIFIER
```
public static final java.lang.String REAGENTIDENTIFIER
```
    See Also:
    
    Constant Field Values
  - SCREEN
```
public static final java.lang.String SCREEN
```
    See Also:
    
    Constant Field Values
  - WELLLINKSCOUNTPEROWNER
```
public static final java.lang.String WELLLINKSCOUNTPEROWNER
```
    See Also:
    
    Constant Field Values
  - WELLLINKS
```
public static final java.lang.String WELLLINKS
```
    See Also:
    
    Constant Field Values
  - ANNOTATIONLINKSCOUNTPEROWNER
```
public static final java.lang.String ANNOTATIONLINKSCOUNTPEROWNER
```
    See Also:
    
    Constant Field Values
  - ANNOTATIONLINKS
```
public static final java.lang.String ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - DESCRIPTION
```
public static final java.lang.String DESCRIPTION
```
    See Also:
    
    Constant Field Values
  - DETAILS
```
public static final java.lang.String DETAILS
```
    See Also:
    
    Constant Field Values
  - FIELDS
```
public static final java.util.Set<java.lang.String> FIELDS
```
  - _dynamicFields
```
protected java.util.Map<java.lang.String,java.lang.Object> _dynamicFields
```
  - _loaded
```
protected boolean _loaded
```
- Constructor Detail
  - Reagent
```
public Reagent()
```
  - Reagent
```
protected Reagent(java.lang.Long id)
```
  - Reagent
```
public Reagent(java.lang.Long id,
               boolean loaded)
```
    Main constructor.
  - Reagent
```
public Reagent(Screen _screen)
```
- Method Detail
  - getId
```
@DocumentId
public java.lang.Long getId()
```
    The DB unique identifier for this object. You are not responsible for setting the id; however, it can be useful for creating "unloaded" versions of your objects. Each top-level entity contains an id field of type long. For all objects returned from the server, this value will be non-null, which doesn't necessarily hold for the other fields.
    
    Specified by:
    
    getId in interface IObject
    
    Returns:
    
    Long primary key. May be null.
  - setId
```
public void setId(java.lang.Long id)
```
    Description copied from interface: IObject
    
    usually unneeded. Ids are managed by the backend.
    
    Specified by:
    
    setId in interface IObject
    
    Parameters:
    
    id - Long value for this id.
  - getVersion
```
public java.lang.Integer getVersion()
```
    This version number is controlled by the database for optimisitic locking.
    
    Specified by:
    
    getVersion in interface IMutable
  - setVersion
```
public void setVersion(java.lang.Integer version)
```
    Description copied from interface: IMutable
    
    use with caution. In general, the version should only be altered by the backend. In the best case, an exception will be thrown for a version not equal to the current DB value. In the worst (though rare) case, the new version could match the database, and override optimistic lock checks that are supposed to prevent data loss.
    
    Specified by:
    
    setVersion in interface IMutable
    
    Parameters:
    
    version - Value for this objects version.
  - getName
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields")
public java.lang.String getName()
```
    Simple field ome.model.screen.Reagent.name (java.lang.String)
  - setName
```
public void setName(java.lang.String name)
```
  - getReagentIdentifier
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields")
public java.lang.String getReagentIdentifier()
```
    Simple field ome.model.screen.Reagent.reagentIdentifier (java.lang.String)
  - setReagentIdentifier
```
public void setReagentIdentifier(java.lang.String reagentIdentifier)
```
  - getScreen
```
public Screen getScreen()
```
    Many-to-one field ome.model.screen.Reagent.screen (ome.model.screen.Screen)
  - setScreen
```
public void setScreen(Screen screen)
```
  - getWellLinks
```
protected java.util.Set<WellReagentLink> getWellLinks()
```
    returns wellLinks . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.screen.Reagent.wellLinks (ome.model.screen.WellReagentLink)
  - setWellLinks
```
protected void setWellLinks(java.util.Set<WellReagentLink> wellLinks)
```
    setter for wellLinks should be avoided. Does not fulfill normal semantics.
  - sizeOfWellLinks
```
public int sizeOfWellLinks()
```
    returns the size of wellLinks. If less than zero, the Set was null.
  - iterateWellLinks
```
public java.util.Iterator<WellReagentLink> iterateWellLinks()
```
    should be used rather than accessing the wellLinks set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfWellLinks() is less than zero.
  - unmodifiableWellLinks
```
public java.util.Collection<WellReagentLink> unmodifiableWellLinks()
```
    Returns an unmodifiable collection-view
  - collectWellLinks
```
public <E> java.util.List<E> collectWellLinks(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iterateWellLinks() internally and so will return a value even if the underlying collection is null.
  - addWellReagentLink
```
public void addWellReagentLink(WellReagentLink target)
```
    use instead of setWellLinks . Makes the necessary call on ome.model.screen.WellReagentLink as well.
  - addWellReagentLinkSet
```
public void addWellReagentLinkSet(java.util.Collection<WellReagentLink> targets)
```
    use like addWellReagentLink.
  - removeWellReagentLink
```
public void removeWellReagentLink(WellReagentLink target)
```
    removes a single element from this set and makes the inverse call on ome.model.screen.WellReagentLink
  - removeWellReagentLinkSet
```
public void removeWellReagentLinkSet(java.util.Collection<WellReagentLink> targets)
```
    use like removeWellReagentLink
  - linkWell
```
public WellReagentLink linkWell(Well addition)
```
    Adds a ome.model.screen.WellReagentLink to wellLinks . This entails changing our wellLinks Set, creating a new ome.model.screen.WellReagentLink and calling linkWell on the ome.model.screen.Well.
  - addWellReagentLink
```
public void addWellReagentLink(WellReagentLink link,
                               boolean bothSides)
```
    Adds a ome.model.screen.WellReagentLink to wellLinks, allowing for recursion -- whether or not addWellReagentLink will be called on the addition if it is loaded
  - linkedWellIterator
```
public java.util.Iterator<Well> linkedWellIterator()
```
    provides an iterator over the child values of the wellLinks. Like with most Collection iterators, modifications to the underlying collection while iterating will result in an ConcurrentModificationException. Use linkedWellList() instead.
  - findWellReagentLink
```
public java.util.Set<WellReagentLink> findWellReagentLink(Well target)
```
    find all ome.model.screen.WellReagentLink which have the argument as their parent.
  - linkedWellList
```
public java.util.List<Well> linkedWellList()
```
    produces a List-copy of the underlying collection. Unlike, linkedWellIterator(), while using the returned List, modifications can be made to the underlying collection without throwing ConcurrentModificationException.
  - eachLinkedWell
```
public <E> java.util.List<E> eachLinkedWell(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results. If block == null, then the iterator values themselves are collected.
  - unlinkWell
```
public void unlinkWell(Well removal)
```
    unlinks all ome.model.screen.Well instances from this instance.
  - removeWellReagentLink
```
public void removeWellReagentLink(WellReagentLink link,
                                  boolean bothSides)
```
    removes the given WellReagentLink from wellLinks, allowing for recursion -- whether or not the removal will call unlinkReagent again if loaded.
  - clearWellLinks
```
public void clearWellLinks()
```
    clears the set.
  - setWellLinksCountPerOwner
```
protected void setWellLinksCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
```
  - getWellLinksCountPerOwner
```
public java.util.Map<java.lang.Long,java.lang.Long> getWellLinksCountPerOwner()
```
    If fetched, returns the count(*) of ome.model.screen.WellReagentLink that a user has. If unfetched, returns null. No entries in the collection should be null.
  - getAnnotationLinks
```
protected java.util.Set<ReagentAnnotationLink> getAnnotationLinks()
```
    returns annotationLinks . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.screen.Reagent.annotationLinks (ome.model.annotations.ReagentAnnotationLink)
  - setAnnotationLinks
```
protected void setAnnotationLinks(java.util.Set<ReagentAnnotationLink> annotationLinks)
```
    setter for annotationLinks should be avoided. Does not fulfill normal semantics.
  - sizeOfAnnotationLinks
```
public int sizeOfAnnotationLinks()
```
    returns the size of annotationLinks. If less than zero, the Set was null.
    
    Specified by:
    
    sizeOfAnnotationLinks in interface IAnnotated
  - iterateAnnotationLinks
```
public java.util.Iterator<ReagentAnnotationLink> iterateAnnotationLinks()
```
    should be used rather than accessing the annotationLinks set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfAnnotationLinks() is less than zero.
    
    Specified by:
    
    iterateAnnotationLinks in interface IAnnotated
  - unmodifiableAnnotationLinks
```
public java.util.Collection<ReagentAnnotationLink> unmodifiableAnnotationLinks()
```
    Returns an unmodifiable collection-view
    
    Specified by:
    
    unmodifiableAnnotationLinks in interface IAnnotated
  - collectAnnotationLinks
```
public <E> java.util.List<E> collectAnnotationLinks(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.annotations.ReagentAnnotationLink while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iterateAnnotationLinks() internally and so will return a value even if the underlying collection is null.
    
    Specified by:
    
    collectAnnotationLinks in interface IAnnotated
  - addReagentAnnotationLink
```
public void addReagentAnnotationLink(ReagentAnnotationLink target)
```
    use instead of setAnnotationLinks . Makes the necessary call on ome.model.annotations.ReagentAnnotationLink as well.
  - addReagentAnnotationLinkSet
```
public void addReagentAnnotationLinkSet(java.util.Collection<ReagentAnnotationLink> targets)
```
    use like addReagentAnnotationLink.
  - removeReagentAnnotationLink
```
public void removeReagentAnnotationLink(ReagentAnnotationLink target)
```
    removes a single element from this set and makes the inverse call on ome.model.annotations.ReagentAnnotationLink
  - removeReagentAnnotationLinkSet
```
public void removeReagentAnnotationLinkSet(java.util.Collection<ReagentAnnotationLink> targets)
```
    use like removeReagentAnnotationLink
  - linkAnnotation
```
public ReagentAnnotationLink linkAnnotation(Annotation addition)
```
    Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks . This entails changing our annotationLinks Set, creating a new ome.model.annotations.ReagentAnnotationLink and calling linkAnnotation on the ome.model.annotations.Annotation.
    
    Specified by:
    
    linkAnnotation in interface IAnnotated
  - addReagentAnnotationLink
```
public void addReagentAnnotationLink(ReagentAnnotationLink link,
                                     boolean bothSides)
```
    Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks, allowing for recursion -- whether or not addReagentAnnotationLink will be called on the addition if it is loaded
  - linkedAnnotationIterator
```
public java.util.Iterator<Annotation> linkedAnnotationIterator()
```
    provides an iterator over the parent values of the annotationLinks. Like with most Collection iterators, modifications to the underlying collection while iterating will result in an ConcurrentModificationException. Use linkedAnnotationList() instead.
    
    Specified by:
    
    linkedAnnotationIterator in interface IAnnotated
  - findReagentAnnotationLink
```
public java.util.Set<ReagentAnnotationLink> findReagentAnnotationLink(Annotation target)
```
    find all ome.model.annotations.ReagentAnnotationLink which have the argument as their child.
  - linkedAnnotationList
```
public java.util.List<Annotation> linkedAnnotationList()
```
    produces a List-copy of the underlying collection. Unlike, linkedAnnotationIterator(), while using the returned List, modifications can be made to the underlying collection without throwing ConcurrentModificationException.
    
    Specified by:
    
    linkedAnnotationList in interface IAnnotated
  - eachLinkedAnnotation
```
public <E> java.util.List<E> eachLinkedAnnotation(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results. If block == null, then the iterator values themselves are collected.
    
    Specified by:
    
    eachLinkedAnnotation in interface IAnnotated
  - unlinkAnnotation
```
public void unlinkAnnotation(Annotation removal)
```
    unlinks all ome.model.annotations.Annotation instances from this instance.
    
    Specified by:
    
    unlinkAnnotation in interface IAnnotated
  - removeReagentAnnotationLink
```
public void removeReagentAnnotationLink(ReagentAnnotationLink link,
                                        boolean bothSides)
```
    removes the given ReagentAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkReagent again if loaded.
  - clearAnnotationLinks
```
public void clearAnnotationLinks()
```
    clears the set.
    
    Specified by:
    
    clearAnnotationLinks in interface IAnnotated
  - setAnnotationLinksCountPerOwner
```
protected void setAnnotationLinksCountPerOwner(java.util.Map<java.lang.Long,java.lang.Long> map)
```
  - getAnnotationLinksCountPerOwner
```
public java.util.Map<java.lang.Long,java.lang.Long> getAnnotationLinksCountPerOwner()
```
    If fetched, returns the count(*) of ome.model.annotations.ReagentAnnotationLink that a user has. If unfetched, returns null. No entries in the collection should be null.
  - getDescription
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,analyzer=@Analyzer(impl=ConfiguredAnalyzer.class),name="combined_fields")
public java.lang.String getDescription()
```
    Simple field ome.model.screen.Reagent.description (java.lang.String)
  - setDescription
```
public void setDescription(java.lang.String description)
```
  - getDetails
```
public Details getDetails()
```
    The details of this object correspond to low-level system information. Owner, permissions, Details is always guaranteed to be non-null, unless the user actively nulls it. Every entity also contains a Detail reference, which doesn't refer to a separate table but rather to a collection of fields collected into a Hibernate "component" which is embedded in the object. HQL queries which refer to the Details component cannot directly fetch the entity like this: select o from Object join fetch o.details but rather each field of the Details instance must be explicitly joined: select o from Object join fetch o.details.owner It should also be noted that not all types have all the fields which are present on Details. For example, select e from Experimenter e join fetch e.details.owner will fail. Experimenter has no owner, for obvious reasons. Note: subclasses of this class will return a subclass of the Details type.
    
    Specified by:
    
    getDetails in interface IObject
  - setDetails
```
protected void setDetails(Details details)
```
  - isValid
```
public boolean isValid()
```
    Description copied from interface: IObject
    
    calls the class-specific validator for this instance and returns the value from Validation.isValid()
    
    Specified by:
    
    isValid in interface IObject
  - validate
```
public Validation validate()
```
    Description copied from interface: IObject
    
    calls the class-specific validator for this instance and returns the Validation object.
    
    Specified by:
    
    validate in interface IObject
    
    Returns:
    
    Validation collecting parameter.
  - newInstance
```
public Reagent newInstance()
```
  - proxy
```
public Reagent proxy()
```
  - acceptFilter
```
public boolean acceptFilter(Filter __filter)
```
    Specified by:
    
    acceptFilter in interface Filterable
  - toString
```
public java.lang.String toString()
```
    Overrides:
    
    toString in class java.lang.Object
  - fields
```
public java.util.Set<java.lang.String> fields()
```
    Description copied from interface: IObject
    
    returns a Set of field names that belong to this class
    
    Specified by:
    
    fields in interface IObject
  - retrieve
```
public java.lang.Object retrieve(java.lang.String field)
```
    Description copied from interface: IObject
    
    retrieves a value from this instance. Values for field which match a field of this instance will be delegated to the accessors. Otherwise, values will be retrieved from a lazy-loaded map filled by calls to IObject.putAt(String, Object)
    
    Specified by:
    
    retrieve in interface IObject
  - putAt
```
public void putAt(java.lang.String field,
                  java.lang.Object value)
```
    Description copied from interface: IObject
    
    stores a value in this instance. Values for field which match a field of this instance will be delegated to the accessors. Otherwise, values will be stored in a lazy-loaded map.
    
    Specified by:
    
    putAt in interface IObject
    
    Parameters:
    
    field - Field name
    
    value - Any object to be stored.
  - isLoaded
```
public boolean isLoaded()
```
    Description copied from interface: IObject
    
    transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
    
    Specified by:
    
    isLoaded in interface IObject
  - errorIfUnloaded
```
protected void errorIfUnloaded()
```
  - unload
```
public void unload()
```
    Description copied from interface: IObject
    
    set the loaded field to false, and set all non-ID fields to null. Subsequent calls to all accessors other than getId/setId will throw an ApiUsageException
    
    Specified by:
    
    unload in interface IObject
  - getGraphHolder
```
public final GraphHolder getGraphHolder()
```
    Description copied from interface: IObject
    
    retrieves the GraphHolder for this entity. If the GraphHolder has not been actively set, a new one will be instatiated.
    
    Specified by:
    
    getGraphHolder in interface IObject
    
    Returns:
    
    Non-null GraphHolder
  - throwNullCollectionException
```
protected void throwNullCollectionException(java.lang.String propertyName)
```

Class Reagent

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

OWNER_FILTER

GROUP_FILTER

EVENT_FILTER

PERMS_FILTER

ID

id

VERSION

version

name

reagentIdentifier

screen

wellLinks

OWNER_FILTER_WELLLINKS

GROUP_FILTER_WELLLINKS

EVENT_FILTER_WELLLINKS

PERMS_FILTER_WELLLINKS

annotationLinks

OWNER_FILTER_ANNOTATIONLINKS

GROUP_FILTER_ANNOTATIONLINKS

EVENT_FILTER_ANNOTATIONLINKS

PERMS_FILTER_ANNOTATIONLINKS

description

details

NAME

REAGENTIDENTIFIER

SCREEN

WELLLINKSCOUNTPEROWNER

WELLLINKS

ANNOTATIONLINKSCOUNTPEROWNER

ANNOTATIONLINKS

DESCRIPTION

DETAILS

FIELDS

_dynamicFields

_loaded

Constructor Detail

Reagent

Reagent

Reagent

Reagent

Method Detail

getId

setId

getVersion

setVersion

getName

setName

getReagentIdentifier

setReagentIdentifier

getScreen

setScreen

getWellLinks

setWellLinks

sizeOfWellLinks

iterateWellLinks

unmodifiableWellLinks

collectWellLinks

addWellReagentLink

addWellReagentLinkSet

removeWellReagentLink

removeWellReagentLinkSet

linkWell

addWellReagentLink

linkedWellIterator

findWellReagentLink

linkedWellList

eachLinkedWell

unlinkWell

removeWellReagentLink

clearWellLinks

setWellLinksCountPerOwner

getWellLinksCountPerOwner

getAnnotationLinks