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A

a00 - Variable in class ome.model.roi.AffineTransform
 
A00 - Static variable in class ome.model.roi.AffineTransform
 
a01 - Variable in class ome.model.roi.AffineTransform
 
A01 - Static variable in class ome.model.roi.AffineTransform
 
a02 - Variable in class ome.model.roi.AffineTransform
 
A02 - Static variable in class ome.model.roi.AffineTransform
 
a10 - Variable in class ome.model.roi.AffineTransform
 
A10 - Static variable in class ome.model.roi.AffineTransform
 
a11 - Variable in class ome.model.roi.AffineTransform
 
A11 - Static variable in class ome.model.roi.AffineTransform
 
a12 - Variable in class ome.model.roi.AffineTransform
 
A12 - Static variable in class ome.model.roi.AffineTransform
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Arc
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Detector
 
acceptFilter(Filter) - Method in class ome.model.acquisition.DetectorSettings
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Dichroic
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Filament
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Filter
 
acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSet
 
acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
acceptFilter(Filter) - Method in class ome.model.acquisition.GenericExcitationSource
 
acceptFilter(Filter) - Method in class ome.model.acquisition.ImagingEnvironment
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Instrument
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Laser
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightEmittingDiode
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightPath
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightSettings
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightSource
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Microscope
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Objective
 
acceptFilter(Filter) - Method in class ome.model.acquisition.ObjectiveSettings
 
acceptFilter(Filter) - Method in class ome.model.acquisition.OTF
 
acceptFilter(Filter) - Method in class ome.model.acquisition.StageLabel
 
acceptFilter(Filter) - Method in class ome.model.acquisition.TransmittanceRange
 
acceptFilter(Filter) - Method in class ome.model.annotations.Annotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.BasicAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.BooleanAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.ChannelAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.CommentAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.DatasetAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.DetectorAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.DichroicAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.DoubleAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.FileAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.FilesetAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.FilterAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.FolderAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ImageAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.LightPathAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ListAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.LongAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.MapAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.NodeAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.NumericAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.PlateAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ProjectAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ReagentAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.RoiAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ScreenAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.SessionAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ShapeAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.TagAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.TermAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.TextAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.TimestampAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.TypeAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.WellAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.XmlAnnotation
 
acceptFilter(Filter) - Method in class ome.model.containers.Dataset
 
acceptFilter(Filter) - Method in class ome.model.containers.DatasetImageLink
 
acceptFilter(Filter) - Method in class ome.model.containers.Folder
 
acceptFilter(Filter) - Method in class ome.model.containers.FolderImageLink
 
acceptFilter(Filter) - Method in class ome.model.containers.FolderRoiLink
 
acceptFilter(Filter) - Method in class ome.model.containers.Project
 
acceptFilter(Filter) - Method in class ome.model.containers.ProjectDatasetLink
 
acceptFilter(Filter) - Method in class ome.model.core.Channel
 
acceptFilter(Filter) - Method in class ome.model.core.Image
 
acceptFilter(Filter) - Method in class ome.model.core.LogicalChannel
 
acceptFilter(Filter) - Method in class ome.model.core.OriginalFile
 
acceptFilter(Filter) - Method in class ome.model.core.Pixels
 
acceptFilter(Filter) - Method in class ome.model.core.PixelsOriginalFileMap
 
acceptFilter(Filter) - Method in class ome.model.core.PlaneInfo
 
acceptFilter(Filter) - Method in class ome.model.display.ChannelBinding
 
acceptFilter(Filter) - Method in class ome.model.display.CodomainMapContext
 
acceptFilter(Filter) - Method in class ome.model.display.ContrastStretchingContext
 
acceptFilter(Filter) - Method in class ome.model.display.PlaneSlicingContext
 
acceptFilter(Filter) - Method in class ome.model.display.ProjectionDef
 
acceptFilter(Filter) - Method in class ome.model.display.QuantumDef
 
acceptFilter(Filter) - Method in class ome.model.display.RenderingDef
 
acceptFilter(Filter) - Method in class ome.model.display.ReverseIntensityContext
 
acceptFilter(Filter) - Method in class ome.model.display.Thumbnail
 
acceptFilter(Filter) - Method in class ome.model.enums.AcquisitionMode
 
acceptFilter(Filter) - Method in class ome.model.enums.AdminPrivilege
 
acceptFilter(Filter) - Method in class ome.model.enums.ArcType
 
acceptFilter(Filter) - Method in class ome.model.enums.Binning
 
acceptFilter(Filter) - Method in class ome.model.enums.ChecksumAlgorithm
 
acceptFilter(Filter) - Method in class ome.model.enums.ContrastMethod
 
acceptFilter(Filter) - Method in class ome.model.enums.Correction
 
acceptFilter(Filter) - Method in class ome.model.enums.DetectorType
 
acceptFilter(Filter) - Method in class ome.model.enums.DimensionOrder
 
acceptFilter(Filter) - Method in class ome.model.enums.EventType
 
acceptFilter(Filter) - Method in class ome.model.enums.ExperimentType
 
acceptFilter(Filter) - Method in class ome.model.enums.Family
 
acceptFilter(Filter) - Method in class ome.model.enums.FilamentType
 
acceptFilter(Filter) - Method in class ome.model.enums.FilterType
 
acceptFilter(Filter) - Method in class ome.model.enums.Format
 
acceptFilter(Filter) - Method in class ome.model.enums.Illumination
 
acceptFilter(Filter) - Method in class ome.model.enums.Immersion
 
acceptFilter(Filter) - Method in class ome.model.enums.LaserMedium
 
acceptFilter(Filter) - Method in class ome.model.enums.LaserType
 
acceptFilter(Filter) - Method in class ome.model.enums.Medium
 
acceptFilter(Filter) - Method in class ome.model.enums.MicrobeamManipulationType
 
acceptFilter(Filter) - Method in class ome.model.enums.MicroscopeType
 
acceptFilter(Filter) - Method in class ome.model.enums.PhotometricInterpretation
 
acceptFilter(Filter) - Method in class ome.model.enums.PixelsType
 
acceptFilter(Filter) - Method in class ome.model.enums.ProjectionAxis
 
acceptFilter(Filter) - Method in class ome.model.enums.ProjectionType
 
acceptFilter(Filter) - Method in class ome.model.enums.Pulse
 
acceptFilter(Filter) - Method in class ome.model.enums.RenderingModel
 
acceptFilter(Filter) - Method in class ome.model.experiment.Experiment
 
acceptFilter(Filter) - Method in class ome.model.experiment.MicrobeamManipulation
 
acceptFilter(Filter) - Method in class ome.model.fs.Fileset
 
acceptFilter(Filter) - Method in class ome.model.fs.FilesetEntry
 
acceptFilter(Filter) - Method in class ome.model.fs.FilesetJobLink
 
acceptFilter(Filter) - Method in class ome.model.internal.Details
 
acceptFilter(Filter) - Method in class ome.model.internal.Link
 
acceptFilter(Filter) - Method in class ome.model.jobs.ImportJob
Deprecated.
 
acceptFilter(Filter) - Method in class ome.model.jobs.IndexingJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.IntegrityCheckJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.Job
 
acceptFilter(Filter) - Method in class ome.model.jobs.JobOriginalFileLink
 
acceptFilter(Filter) - Method in class ome.model.jobs.JobStatus
 
acceptFilter(Filter) - Method in class ome.model.jobs.MetadataImportJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.ParseJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.PixelDataJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.ScriptJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.ThumbnailGenerationJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.UploadJob
 
acceptFilter(Filter) - Method in class ome.model.meta.DBPatch
 
acceptFilter(Filter) - Method in class ome.model.meta.Event
 
acceptFilter(Filter) - Method in class ome.model.meta.EventLog
 
acceptFilter(Filter) - Method in class ome.model.meta.Experimenter
 
acceptFilter(Filter) - Method in class ome.model.meta.ExperimenterGroup
 
acceptFilter(Filter) - Method in class ome.model.meta.ExternalInfo
 
acceptFilter(Filter) - Method in class ome.model.meta.GroupExperimenterMap
 
acceptFilter(Filter) - Method in class ome.model.meta.Namespace
 
acceptFilter(Filter) - Method in class ome.model.meta.Node
 
acceptFilter(Filter) - Method in class ome.model.meta.Session
 
acceptFilter(Filter) - Method in class ome.model.meta.Share
 
acceptFilter(Filter) - Method in class ome.model.meta.ShareMember
 
acceptFilter(Filter) - Method in class ome.model.roi.AffineTransform
 
acceptFilter(Filter) - Method in class ome.model.roi.Ellipse
 
acceptFilter(Filter) - Method in class ome.model.roi.Label
 
acceptFilter(Filter) - Method in class ome.model.roi.Line
 
acceptFilter(Filter) - Method in class ome.model.roi.Mask
 
acceptFilter(Filter) - Method in class ome.model.roi.Path
Deprecated.
 
acceptFilter(Filter) - Method in class ome.model.roi.Point
 
acceptFilter(Filter) - Method in class ome.model.roi.Polygon
 
acceptFilter(Filter) - Method in class ome.model.roi.Polyline
 
acceptFilter(Filter) - Method in class ome.model.roi.Rectangle
 
acceptFilter(Filter) - Method in class ome.model.roi.Roi
 
acceptFilter(Filter) - Method in class ome.model.roi.Shape
 
acceptFilter(Filter) - Method in class ome.model.screen.Plate
 
acceptFilter(Filter) - Method in class ome.model.screen.PlateAcquisition
 
acceptFilter(Filter) - Method in class ome.model.screen.Reagent
 
acceptFilter(Filter) - Method in class ome.model.screen.Screen
 
acceptFilter(Filter) - Method in class ome.model.screen.ScreenPlateLink
 
acceptFilter(Filter) - Method in class ome.model.screen.Well
 
acceptFilter(Filter) - Method in class ome.model.screen.WellReagentLink
 
acceptFilter(Filter) - Method in class ome.model.screen.WellSample
 
acceptFilter(Filter) - Method in class ome.model.stats.StatsInfo
 
acceptFilter(Filter) - Method in class ome.model.units.ElectricPotential
 
acceptFilter(Filter) - Method in class ome.model.units.Frequency
 
acceptFilter(Filter) - Method in class ome.model.units.Length
 
acceptFilter(Filter) - Method in class ome.model.units.Power
 
acceptFilter(Filter) - Method in class ome.model.units.Pressure
 
acceptFilter(Filter) - Method in class ome.model.units.Temperature
 
acceptFilter(Filter) - Method in class ome.model.units.Time
 
acceptFilter(Filter) - Method in interface ome.util.Filterable
 
acceptFilter(Filter) - Method in class ome.util.PermDetails
 
ACLCreateViolation - Exception in ome.conditions.acl
User does not have permissions to perform given action.
ACLCreateViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLCreateViolation
 
ACLDeleteViolation - Exception in ome.conditions.acl
User does not have permissions to perform given action.
ACLDeleteViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLDeleteViolation
 
ACLLoadViolation - Exception in ome.conditions.acl
User does not have permissions to perform given action.
ACLLoadViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLLoadViolation
 
ACLUpdateViolation - Exception in ome.conditions.acl
User does not have permissions to perform given action.
ACLUpdateViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLUpdateViolation
 
ACLViolation - Exception in ome.conditions.acl
User has attempted an action which is not permitted by the Permissions of a given instance.
ACLViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLViolation
 
acquisitionData - Variable in class ome.parameters.Options
 
acquisitionDate - Variable in class ome.model.core.Image
 
ACQUISITIONDATE - Static variable in class ome.model.core.Image
 
AcquisitionMode - Class in ome.model.enums
 
AcquisitionMode() - Constructor for class ome.model.enums.AcquisitionMode
 
AcquisitionMode(Long) - Constructor for class ome.model.enums.AcquisitionMode
 
AcquisitionMode(Long, boolean) - Constructor for class ome.model.enums.AcquisitionMode
Main constructor.
AcquisitionMode(String) - Constructor for class ome.model.enums.AcquisitionMode
 
AcquisitionMode.Details - Class in ome.model.enums
 
action - Variable in class ome.model.meta.EventLog
 
ACTION - Static variable in class ome.model.meta.EventLog
 
active - Variable in class ome.model.display.ChannelBinding
 
ACTIVE - Static variable in class ome.model.display.ChannelBinding
 
active - Variable in class ome.model.display.ProjectionDef
 
ACTIVE - Static variable in class ome.model.display.ProjectionDef
 
active - Variable in class ome.model.meta.Share
 
ACTIVE - Static variable in class ome.model.meta.Share
 
activeSession(String) - Method in class ome.util.actions.PostgresSqlAction
 
activeSession(String) - Method in interface ome.util.SqlAction
Returns whether the given string is the UUID of a session that is currently active.
Add(Conversion...) - Static method in class ome.model.units.Conversion
Static helper for creating Conversion.Add instances.
Add(Conversion[]) - Constructor for class ome.model.units.Conversion.Add
 
add(QueryParameter) - Method in class ome.parameters.Parameters
 
add(String) - Method in class ome.parameters.Period
 
addAlgorithm(String) - Method in class ome.parameters.Parameters
 
addAll(Parameters) - Method in class ome.parameters.Parameters
adds all the information from the passed in Parameters instance to this instance.
addAll(QueryParameter[]) - Method in class ome.parameters.Parameters
adds all the information from the passed in Parameters instance to this instance.
addAnnotationAnnotationLink(AnnotationAnnotationLink) - Method in class ome.model.annotations.Annotation
use instead of setAnnotationLinks .
addAnnotationAnnotationLink(AnnotationAnnotationLink, boolean) - Method in class ome.model.annotations.Annotation
Adds a ome.model.annotations.AnnotationAnnotationLink to annotationLinks, allowing for recursion -- whether or not addAnnotationAnnotationLink will be called on the addition if it is loaded
addAnnotationAnnotationLinkSet(Collection<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation
use like addAnnotationAnnotationLink.
addBoolean(String, Boolean) - Method in class ome.parameters.Parameters
 
addChannel(Channel) - Method in class ome.model.core.LogicalChannel
use instead of setChannels .
addChannel(Channel) - Method in class ome.model.core.Pixels
use instead of setChannels .
addChannelAnnotationLink(ChannelAnnotationLink) - Method in class ome.model.core.Channel
use instead of setAnnotationLinks .
addChannelAnnotationLink(ChannelAnnotationLink, boolean) - Method in class ome.model.core.Channel
Adds a ome.model.annotations.ChannelAnnotationLink to annotationLinks, allowing for recursion -- whether or not addChannelAnnotationLink will be called on the addition if it is loaded
addChannelAnnotationLinkSet(Collection<ChannelAnnotationLink>) - Method in class ome.model.core.Channel
use like addChannelAnnotationLink.
addChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef
use instead of setWaveRendering .
addChannelBindingSet(Collection<ChannelBinding>) - Method in class ome.model.display.RenderingDef
use like addChannelBinding.
addChannelSet(Collection<Channel>) - Method in class ome.model.core.LogicalChannel
use like addChannel.
addChannelSet(Collection<Channel>) - Method in class ome.model.core.Pixels
use like addChannel.
addChildFolders(Folder) - Method in class ome.model.containers.Folder
use instead of setChildFolders .
addChildFoldersSet(Collection<Folder>) - Method in class ome.model.containers.Folder
use like addFolder.
addClass(Class) - Method in class ome.parameters.Parameters
 
addClass(String, Class) - Method in class ome.parameters.Parameters
 
addCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding
use instead of setSpatialDomainEnhancement .
addCodomainMapContextSet(Collection<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding
use like addCodomainMapContext.
addDatasetAnnotationLink(DatasetAnnotationLink) - Method in class ome.model.containers.Dataset
use instead of setAnnotationLinks .
addDatasetAnnotationLink(DatasetAnnotationLink, boolean) - Method in class ome.model.containers.Dataset
Adds a ome.model.annotations.DatasetAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDatasetAnnotationLink will be called on the addition if it is loaded
addDatasetAnnotationLinkSet(Collection<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset
use like addDatasetAnnotationLink.
addDatasetImageLink(DatasetImageLink) - Method in class ome.model.containers.Dataset
use instead of setImageLinks .
addDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.containers.Dataset
Adds a ome.model.containers.DatasetImageLink to imageLinks, allowing for recursion -- whether or not addDatasetImageLink will be called on the addition if it is loaded
addDatasetImageLink(DatasetImageLink) - Method in class ome.model.core.Image
use instead of setDatasetLinks .
addDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.core.Image
Adds a ome.model.containers.DatasetImageLink to datasetLinks, allowing for recursion -- whether or not addDatasetImageLink will be called on the addition if it is loaded
addDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.containers.Dataset
use like addDatasetImageLink.
addDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.core.Image
use like addDatasetImageLink.
addDetector(Detector) - Method in class ome.model.acquisition.Instrument
use instead of setDetector .
addDetectorAnnotationLink(DetectorAnnotationLink) - Method in class ome.model.acquisition.Detector
use instead of setAnnotationLinks .
addDetectorAnnotationLink(DetectorAnnotationLink, boolean) - Method in class ome.model.acquisition.Detector
Adds a ome.model.annotations.DetectorAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDetectorAnnotationLink will be called on the addition if it is loaded
addDetectorAnnotationLinkSet(Collection<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector
use like addDetectorAnnotationLink.
addDetectorSet(Collection<Detector>) - Method in class ome.model.acquisition.Instrument
use like addDetector.
addDichroic(Dichroic) - Method in class ome.model.acquisition.Instrument
use instead of setDichroic .
addDichroicAnnotationLink(DichroicAnnotationLink) - Method in class ome.model.acquisition.Dichroic
use instead of setAnnotationLinks .
addDichroicAnnotationLink(DichroicAnnotationLink, boolean) - Method in class ome.model.acquisition.Dichroic
Adds a ome.model.annotations.DichroicAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDichroicAnnotationLink will be called on the addition if it is loaded
addDichroicAnnotationLinkSet(Collection<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic
use like addDichroicAnnotationLink.
addDichroicSet(Collection<Dichroic>) - Method in class ome.model.acquisition.Instrument
use like addDichroic.
addEvent(Event) - Method in class ome.model.meta.Session
use instead of setEvents .
addEventLog(EventLog) - Method in class ome.model.meta.Event
use instead of setLogs .
addEventLogSet(Collection<EventLog>) - Method in class ome.model.meta.Event
use like addEventLog.
addEventSet(Collection<Event>) - Method in class ome.model.meta.Session
use like addEvent.
addExperimenterAnnotationLink(ExperimenterAnnotationLink) - Method in class ome.model.meta.Experimenter
use instead of setAnnotationLinks .
addExperimenterAnnotationLink(ExperimenterAnnotationLink, boolean) - Method in class ome.model.meta.Experimenter
Adds a ome.model.annotations.ExperimenterAnnotationLink to annotationLinks, allowing for recursion -- whether or not addExperimenterAnnotationLink will be called on the addition if it is loaded
addExperimenterAnnotationLinkSet(Collection<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter
use like addExperimenterAnnotationLink.
addExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink) - Method in class ome.model.meta.ExperimenterGroup
use instead of setAnnotationLinks .
addExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink, boolean) - Method in class ome.model.meta.ExperimenterGroup
Adds a ome.model.annotations.ExperimenterGroupAnnotationLink to annotationLinks, allowing for recursion -- whether or not addExperimenterGroupAnnotationLink will be called on the addition if it is loaded
addExperimenterGroupAnnotationLinkSet(Collection<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup
use like addExperimenterGroupAnnotationLink.
addExtendedRestrictions(Set<String>) - Method in class ome.model.internal.Permissions
 
addFilesetAnnotationLink(FilesetAnnotationLink) - Method in class ome.model.fs.Fileset
use instead of setAnnotationLinks .
addFilesetAnnotationLink(FilesetAnnotationLink, boolean) - Method in class ome.model.fs.Fileset
Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFilesetAnnotationLink will be called on the addition if it is loaded
addFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset
use like addFilesetAnnotationLink.
addFilesetEntry(FilesetEntry) - Method in class ome.model.core.OriginalFile
use instead of setFilesetEntries .
addFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset
use instead of setUsedFiles .
addFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.core.OriginalFile
use like addFilesetEntry.
addFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.fs.Fileset
use like addFilesetEntry.
addFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset
use instead of setJobLinks .
addFilesetJobLink(FilesetJobLink, boolean) - Method in class ome.model.fs.Fileset
Adds a ome.model.fs.FilesetJobLink to jobLinks, allowing for recursion -- whether or not addFilesetJobLink will be called on the addition if it is loaded
addFilesetJobLinkSet(Collection<FilesetJobLink>) - Method in class ome.model.fs.Fileset
use like addFilesetJobLink.
addFilter(Filter) - Method in class ome.model.acquisition.Instrument
use instead of setFilter .
addFilterAnnotationLink(FilterAnnotationLink) - Method in class ome.model.acquisition.Filter
use instead of setAnnotationLinks .
addFilterAnnotationLink(FilterAnnotationLink, boolean) - Method in class ome.model.acquisition.Filter
Adds a ome.model.annotations.FilterAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFilterAnnotationLink will be called on the addition if it is loaded
addFilterAnnotationLinkSet(Collection<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter
use like addFilterAnnotationLink.
addFiltered(String) - Method in class ome.model.internal.Details
consider the collection named by collectionName to be a "filtered" representation of the DB.
addFiltered(Collection<String>) - Method in class ome.model.internal.Details
consider all the collections named by the elements of collection to be a "filtered" representation of the DB.
addFilterSet(Collection<Filter>) - Method in class ome.model.acquisition.Instrument
use like addFilter.
addFilterSet(FilterSet) - Method in class ome.model.acquisition.Instrument
use instead of setFilterSet .
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.Filter
use instead of setEmissionFilterLink .
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.Filter
Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addFilterSetEmissionFilterLink will be called on the addition if it is loaded
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.FilterSet
use instead of setEmissionFilterLink .
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet
Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addFilterSetEmissionFilterLink will be called on the addition if it is loaded
addFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter
use like addFilterSetEmissionFilterLink.
addFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet
use like addFilterSetEmissionFilterLink.
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.Filter
use instead of setExcitationFilterLink .
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.Filter
Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addFilterSetExcitationFilterLink will be called on the addition if it is loaded
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.FilterSet
use instead of setExcitationFilterLink .
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet
Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addFilterSetExcitationFilterLink will be called on the addition if it is loaded
addFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter
use like addFilterSetExcitationFilterLink.
addFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet
use like addFilterSetExcitationFilterLink.
addFilterSetSet(Collection<FilterSet>) - Method in class ome.model.acquisition.Instrument
use like addFilterSet.
addFolderAnnotationLink(FolderAnnotationLink) - Method in class ome.model.containers.Folder
use instead of setAnnotationLinks .
addFolderAnnotationLink(FolderAnnotationLink, boolean) - Method in class ome.model.containers.Folder
Adds a ome.model.annotations.FolderAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFolderAnnotationLink will be called on the addition if it is loaded
addFolderAnnotationLinkSet(Collection<FolderAnnotationLink>) - Method in class ome.model.containers.Folder
use like addFolderAnnotationLink.
addFolderImageLink(FolderImageLink) - Method in class ome.model.containers.Folder
use instead of setImageLinks .
addFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.containers.Folder
Adds a ome.model.containers.FolderImageLink to imageLinks, allowing for recursion -- whether or not addFolderImageLink will be called on the addition if it is loaded
addFolderImageLink(FolderImageLink) - Method in class ome.model.core.Image
use instead of setFolderLinks .
addFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.core.Image
Adds a ome.model.containers.FolderImageLink to folderLinks, allowing for recursion -- whether or not addFolderImageLink will be called on the addition if it is loaded
addFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.containers.Folder
use like addFolderImageLink.
addFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.core.Image
use like addFolderImageLink.
addFolderRoiLink(FolderRoiLink) - Method in class ome.model.containers.Folder
use instead of setRoiLinks .
addFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.containers.Folder
Adds a ome.model.containers.FolderRoiLink to roiLinks, allowing for recursion -- whether or not addFolderRoiLink will be called on the addition if it is loaded
addFolderRoiLink(FolderRoiLink) - Method in class ome.model.roi.Roi
use instead of setFolderLinks .
addFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.roi.Roi
Adds a ome.model.containers.FolderRoiLink to folderLinks, allowing for recursion -- whether or not addFolderRoiLink will be called on the addition if it is loaded
addFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.containers.Folder
use like addFolderRoiLink.
addFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.roi.Roi
use like addFolderRoiLink.
addGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter
use instead of setGroupExperimenterMap .
addGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.Experimenter
Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap, allowing for recursion -- whether or not addGroupExperimenterMap will be called on the addition if it is loaded
addGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.ExperimenterGroup
use instead of setGroupExperimenterMap .
addGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.ExperimenterGroup
Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap, allowing for recursion -- whether or not addGroupExperimenterMap will be called on the addition if it is loaded
addGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter
use like addGroupExperimenterMap.
addGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup
use like addGroupExperimenterMap.
addId(Long) - Method in class ome.parameters.Parameters
 
addIds(Collection) - Method in class ome.parameters.Parameters
 
addImage(Image) - Method in class ome.model.fs.Fileset
use instead of setImages .
addImageAnnotationLink(ImageAnnotationLink) - Method in class ome.model.core.Image
use instead of setAnnotationLinks .
addImageAnnotationLink(ImageAnnotationLink, boolean) - Method in class ome.model.core.Image
Adds a ome.model.annotations.ImageAnnotationLink to annotationLinks, allowing for recursion -- whether or not addImageAnnotationLink will be called on the addition if it is loaded
addImageAnnotationLinkSet(Collection<ImageAnnotationLink>) - Method in class ome.model.core.Image
use like addImageAnnotationLink.
addImageSet(Collection<Image>) - Method in class ome.model.fs.Fileset
use like addImage.
addInstrumentAnnotationLink(InstrumentAnnotationLink) - Method in class ome.model.acquisition.Instrument
use instead of setAnnotationLinks .
addInstrumentAnnotationLink(InstrumentAnnotationLink, boolean) - Method in class ome.model.acquisition.Instrument
Adds a ome.model.annotations.InstrumentAnnotationLink to annotationLinks, allowing for recursion -- whether or not addInstrumentAnnotationLink will be called on the addition if it is loaded
addInstrumentAnnotationLinkSet(Collection<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument
use like addInstrumentAnnotationLink.
addInteger(String, Integer) - Method in class ome.parameters.Parameters
 
addJobOriginalFileLink(JobOriginalFileLink) - Method in class ome.model.jobs.Job
use instead of setOriginalFileLinks .
addJobOriginalFileLink(JobOriginalFileLink, boolean) - Method in class ome.model.jobs.Job
Adds a ome.model.jobs.JobOriginalFileLink to originalFileLinks, allowing for recursion -- whether or not addJobOriginalFileLink will be called on the addition if it is loaded
addJobOriginalFileLinkSet(Collection<JobOriginalFileLink>) - Method in class ome.model.jobs.Job
use like addJobOriginalFileLink.
addLightPathAnnotationLink(LightPathAnnotationLink) - Method in class ome.model.acquisition.LightPath
use instead of setAnnotationLinks .
addLightPathAnnotationLink(LightPathAnnotationLink, boolean) - Method in class ome.model.acquisition.LightPath
Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks, allowing for recursion -- whether or not addLightPathAnnotationLink will be called on the addition if it is loaded
addLightPathAnnotationLinkSet(Collection<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath
use like addLightPathAnnotationLink.
addLightPathEmissionFilterLink(LightPathEmissionFilterLink) - Method in class ome.model.acquisition.LightPath
use instead of setEmissionFilterLink .
addLightPathEmissionFilterLink(LightPathEmissionFilterLink, boolean) - Method in class ome.model.acquisition.LightPath
Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addLightPathEmissionFilterLink will be called on the addition if it is loaded
addLightPathEmissionFilterLinkSet(Collection<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath
use like addLightPathEmissionFilterLink.
addLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath
use instead of setExcitationFilterLink .
addLightPathExcitationFilterLink(LightPathExcitationFilterLink, boolean) - Method in class ome.model.acquisition.LightPath
Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addLightPathExcitationFilterLink will be called on the addition if it is loaded
addLightPathExcitationFilterLinkSet(Collection<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath
use like addLightPathExcitationFilterLink.
addLightSettings(LightSettings) - Method in class ome.model.experiment.MicrobeamManipulation
use instead of setLightSourceSettings .
addLightSettingsSet(Collection<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation
use like addLightSettings.
addLightSource(LightSource) - Method in class ome.model.acquisition.Instrument
use instead of setLightSource .
addLightSourceAnnotationLink(LightSourceAnnotationLink) - Method in class ome.model.acquisition.LightSource
use instead of setAnnotationLinks .
addLightSourceAnnotationLink(LightSourceAnnotationLink, boolean) - Method in class ome.model.acquisition.LightSource
Adds a ome.model.annotations.LightSourceAnnotationLink to annotationLinks, allowing for recursion -- whether or not addLightSourceAnnotationLink will be called on the addition if it is loaded
addLightSourceAnnotationLinkSet(Collection<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource
use like addLightSourceAnnotationLink.
addLightSourceSet(Collection<LightSource>) - Method in class ome.model.acquisition.Instrument
use like addLightSource.
addList(String, List) - Method in class ome.parameters.Parameters
 
addLong(String, Long) - Method in class ome.parameters.Parameters
 
addMap(String, Map) - Method in class ome.parameters.Parameters
 
addMessageWithinDbPatchEnd(String, int, String) - Method in interface ome.util.SqlAction
Add a unique message to the DB patch table within the current patch.
addMessageWithinDbPatchEnd(String, int, String) - Method in class ome.util.SqlAction.Impl
 
addMessageWithinDbPatchStart(String, int, String) - Method in interface ome.util.SqlAction
Add a unique message to the DB patch table within the current patch.
addMessageWithinDbPatchStart(String, int, String) - Method in class ome.util.SqlAction.Impl
 
addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.experiment.Experiment
use instead of setMicrobeamManipulation .
addMicrobeamManipulationSet(Collection<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment
use like addMicrobeamManipulation.
addMimetypes(Collection<String>, MapSqlParameterSource) - Method in class ome.util.SqlAction.Impl
Returns the "and_mimetype" clause which must be appended to a given query.
addNamespaceAnnotationLink(NamespaceAnnotationLink) - Method in class ome.model.meta.Namespace
use instead of setAnnotationLinks .
addNamespaceAnnotationLink(NamespaceAnnotationLink, boolean) - Method in class ome.model.meta.Namespace
Adds a ome.model.annotations.NamespaceAnnotationLink to annotationLinks, allowing for recursion -- whether or not addNamespaceAnnotationLink will be called on the addition if it is loaded
addNamespaceAnnotationLinkSet(Collection<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace
use like addNamespaceAnnotationLink.
addNodeAnnotationLink(NodeAnnotationLink) - Method in class ome.model.meta.Node
use instead of setAnnotationLinks .
addNodeAnnotationLink(NodeAnnotationLink, boolean) - Method in class ome.model.meta.Node
Adds a ome.model.annotations.NodeAnnotationLink to annotationLinks, allowing for recursion -- whether or not addNodeAnnotationLink will be called on the addition if it is loaded
addNodeAnnotationLinkSet(Collection<NodeAnnotationLink>) - Method in class ome.model.meta.Node
use like addNodeAnnotationLink.
addObjective(Objective) - Method in class ome.model.acquisition.Instrument
use instead of setObjective .
addObjectiveAnnotationLink(ObjectiveAnnotationLink) - Method in class ome.model.acquisition.Objective
use instead of setAnnotationLinks .
addObjectiveAnnotationLink(ObjectiveAnnotationLink, boolean) - Method in class ome.model.acquisition.Objective
Adds a ome.model.annotations.ObjectiveAnnotationLink to annotationLinks, allowing for recursion -- whether or not addObjectiveAnnotationLink will be called on the addition if it is loaded
addObjectiveAnnotationLinkSet(Collection<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective
use like addObjectiveAnnotationLink.
addObjectiveSet(Collection<Objective>) - Method in class ome.model.acquisition.Instrument
use like addObjective.
addOriginalFileAnnotationLink(OriginalFileAnnotationLink) - Method in class ome.model.core.OriginalFile
use instead of setAnnotationLinks .
addOriginalFileAnnotationLink(OriginalFileAnnotationLink, boolean) - Method in class ome.model.core.OriginalFile
Adds a ome.model.annotations.OriginalFileAnnotationLink to annotationLinks, allowing for recursion -- whether or not addOriginalFileAnnotationLink will be called on the addition if it is loaded
addOriginalFileAnnotationLinkSet(Collection<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile
use like addOriginalFileAnnotationLink.
addOTF(OTF) - Method in class ome.model.acquisition.Instrument
use instead of setOtf .
addOTFSet(Collection<OTF>) - Method in class ome.model.acquisition.Instrument
use like addOTF.
addPixels(Pixels) - Method in class ome.model.core.Image
use instead of setPixels .
addPixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.OriginalFile
use instead of setPixelsFileMaps .
addPixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.OriginalFile
Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps, allowing for recursion -- whether or not addPixelsOriginalFileMap will be called on the addition if it is loaded
addPixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.Pixels
use instead of setPixelsFileMaps .
addPixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.Pixels
Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps, allowing for recursion -- whether or not addPixelsOriginalFileMap will be called on the addition if it is loaded
addPixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile
use like addPixelsOriginalFileMap.
addPixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels
use like addPixelsOriginalFileMap.
addPixelsSet(Collection<Pixels>) - Method in class ome.model.core.Image
use like addPixels.
addPlaneInfo(PlaneInfo) - Method in class ome.model.core.Pixels
use instead of setPlaneInfo .
addPlaneInfoAnnotationLink(PlaneInfoAnnotationLink) - Method in class ome.model.core.PlaneInfo
use instead of setAnnotationLinks .
addPlaneInfoAnnotationLink(PlaneInfoAnnotationLink, boolean) - Method in class ome.model.core.PlaneInfo
Adds a ome.model.annotations.PlaneInfoAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlaneInfoAnnotationLink will be called on the addition if it is loaded
addPlaneInfoAnnotationLinkSet(Collection<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo
use like addPlaneInfoAnnotationLink.
addPlaneInfoSet(Collection<PlaneInfo>) - Method in class ome.model.core.Pixels
use like addPlaneInfo.
addPlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.Plate
use instead of setPlateAcquisitions .
addPlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink) - Method in class ome.model.screen.PlateAcquisition
use instead of setAnnotationLinks .
addPlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink, boolean) - Method in class ome.model.screen.PlateAcquisition
Adds a ome.model.annotations.PlateAcquisitionAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAcquisitionAnnotationLink will be called on the addition if it is loaded
addPlateAcquisitionAnnotationLinkSet(Collection<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition
use like addPlateAcquisitionAnnotationLink.
addPlateAcquisitionSet(Collection<PlateAcquisition>) - Method in class ome.model.screen.Plate
use like addPlateAcquisition.
addPlateAnnotationLink(PlateAnnotationLink) - Method in class ome.model.screen.Plate
use instead of setAnnotationLinks .
addPlateAnnotationLink(PlateAnnotationLink, boolean) - Method in class ome.model.screen.Plate
Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAnnotationLink will be called on the addition if it is loaded
addPlateAnnotationLinkSet(Collection<PlateAnnotationLink>) - Method in class ome.model.screen.Plate
use like addPlateAnnotationLink.
addProjectAnnotationLink(ProjectAnnotationLink) - Method in class ome.model.containers.Project
use instead of setAnnotationLinks .
addProjectAnnotationLink(ProjectAnnotationLink, boolean) - Method in class ome.model.containers.Project
Adds a ome.model.annotations.ProjectAnnotationLink to annotationLinks, allowing for recursion -- whether or not addProjectAnnotationLink will be called on the addition if it is loaded
addProjectAnnotationLinkSet(Collection<ProjectAnnotationLink>) - Method in class ome.model.containers.Project
use like addProjectAnnotationLink.
addProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Dataset
use instead of setProjectLinks .
addProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Dataset
Adds a ome.model.containers.ProjectDatasetLink to projectLinks, allowing for recursion -- whether or not addProjectDatasetLink will be called on the addition if it is loaded
addProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Project
use instead of setDatasetLinks .
addProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Project
Adds a ome.model.containers.ProjectDatasetLink to datasetLinks, allowing for recursion -- whether or not addProjectDatasetLink will be called on the addition if it is loaded
addProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset
use like addProjectDatasetLink.
addProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Project
use like addProjectDatasetLink.
addProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef
use instead of setProjections .
addProjectionDefSet(Collection<ProjectionDef>) - Method in class ome.model.display.RenderingDef
use like addProjectionDef.
addReagent(Reagent) - Method in class ome.model.screen.Screen
use instead of setReagents .
addReagentAnnotationLink(ReagentAnnotationLink) - Method in class ome.model.screen.Reagent
use instead of setAnnotationLinks .
addReagentAnnotationLink(ReagentAnnotationLink, boolean) - Method in class ome.model.screen.Reagent
Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks, allowing for recursion -- whether or not addReagentAnnotationLink will be called on the addition if it is loaded
addReagentAnnotationLinkSet(Collection<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent
use like addReagentAnnotationLink.
addReagentSet(Collection<Reagent>) - Method in class ome.model.screen.Screen
use like addReagent.
addRenderingDef(RenderingDef) - Method in class ome.model.core.Pixels
use instead of setSettings .
addRenderingDefSet(Collection<RenderingDef>) - Method in class ome.model.core.Pixels
use like addRenderingDef.
addRoi(Roi) - Method in class ome.model.core.Image
use instead of setRois .
addRoiAnnotationLink(RoiAnnotationLink) - Method in class ome.model.roi.Roi
use instead of setAnnotationLinks .
addRoiAnnotationLink(RoiAnnotationLink, boolean) - Method in class ome.model.roi.Roi
Adds a ome.model.annotations.RoiAnnotationLink to annotationLinks, allowing for recursion -- whether or not addRoiAnnotationLink will be called on the addition if it is loaded
addRoiAnnotationLinkSet(Collection<RoiAnnotationLink>) - Method in class ome.model.roi.Roi
use like addRoiAnnotationLink.
addRoiSet(Collection<Roi>) - Method in class ome.model.core.Image
use like addRoi.
addScreenAnnotationLink(ScreenAnnotationLink) - Method in class ome.model.screen.Screen
use instead of setAnnotationLinks .
addScreenAnnotationLink(ScreenAnnotationLink, boolean) - Method in class ome.model.screen.Screen
Adds a ome.model.annotations.ScreenAnnotationLink to annotationLinks, allowing for recursion -- whether or not addScreenAnnotationLink will be called on the addition if it is loaded
addScreenAnnotationLinkSet(Collection<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen
use like addScreenAnnotationLink.
addScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Plate
use instead of setScreenLinks .
addScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Plate
Adds a ome.model.screen.ScreenPlateLink to screenLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded
addScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Screen
use instead of setPlateLinks .
addScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Screen
Adds a ome.model.screen.ScreenPlateLink to plateLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded
addScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Plate
use like addScreenPlateLink.
addScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Screen
use like addScreenPlateLink.
addSeen(Object) - Method in class ome.util.ContextFilter
 
addSession(Session) - Method in class ome.model.meta.Node
use instead of setSessions .
addSessionAnnotationLink(SessionAnnotationLink) - Method in class ome.model.meta.Session
use instead of setAnnotationLinks .
addSessionAnnotationLink(SessionAnnotationLink, boolean) - Method in class ome.model.meta.Session
Adds a ome.model.annotations.SessionAnnotationLink to annotationLinks, allowing for recursion -- whether or not addSessionAnnotationLink will be called on the addition if it is loaded
addSessionAnnotationLinkSet(Collection<SessionAnnotationLink>) - Method in class ome.model.meta.Session
use like addSessionAnnotationLink.
addSessionSet(Collection<Session>) - Method in class ome.model.meta.Node
use like addSession.
addSet(String, Set) - Method in class ome.parameters.Parameters
 
addShape(Shape) - Method in class ome.model.roi.Roi
use instead of setShapes .
addShapeAnnotationLink(ShapeAnnotationLink) - Method in class ome.model.roi.Shape
use instead of setAnnotationLinks .
addShapeAnnotationLink(ShapeAnnotationLink, boolean) - Method in class ome.model.roi.Shape
Adds a ome.model.annotations.ShapeAnnotationLink to annotationLinks, allowing for recursion -- whether or not addShapeAnnotationLink will be called on the addition if it is loaded
addShapeAnnotationLinkSet(Collection<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape
use like addShapeAnnotationLink.
addShapeSet(Collection<Shape>) - Method in class ome.model.roi.Roi
use like addShape.
addString(String, String) - Method in class ome.parameters.Parameters
 
addThumbnail(Thumbnail) - Method in class ome.model.core.Pixels
use instead of setThumbnails .
addThumbnailSet(Collection<Thumbnail>) - Method in class ome.model.core.Pixels
use like addThumbnail.
addViolation(ACLViolation) - Method in exception ome.conditions.acl.CollectedACLViolations
 
addWell(Well) - Method in class ome.model.screen.Plate
use instead of setWells .
addWellAnnotationLink(WellAnnotationLink) - Method in class ome.model.screen.Well
use instead of setAnnotationLinks .
addWellAnnotationLink(WellAnnotationLink, boolean) - Method in class ome.model.screen.Well
Adds a ome.model.annotations.WellAnnotationLink to annotationLinks, allowing for recursion -- whether or not addWellAnnotationLink will be called on the addition if it is loaded
addWellAnnotationLinkSet(Collection<WellAnnotationLink>) - Method in class ome.model.screen.Well
use like addWellAnnotationLink.
addWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Reagent
use instead of setWellLinks .
addWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Reagent
Adds a ome.model.screen.WellReagentLink to wellLinks, allowing for recursion -- whether or not addWellReagentLink will be called on the addition if it is loaded
addWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Well
use instead of setReagentLinks .
addWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Well
Adds a ome.model.screen.WellReagentLink to reagentLinks, allowing for recursion -- whether or not addWellReagentLink will be called on the addition if it is loaded
addWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Reagent
use like addWellReagentLink.
addWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Well
use like addWellReagentLink.
addWellSample(WellSample) - Method in class ome.model.core.Image
use instead of setWellSamples .
addWellSample(WellSample) - Method in class ome.model.screen.PlateAcquisition
use instead of setWellSample .
addWellSample(WellSample) - Method in class ome.model.screen.Well
use instead of setWellSamples .
addWellSampleSet(Collection<WellSample>) - Method in class ome.model.core.Image
use like addWellSample.
addWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.PlateAcquisition
use like addWellSample.
addWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.Well
use like addWellSample.
addWellSet(Collection<Well>) - Method in class ome.model.screen.Plate
use like addWell.
AdminPrivilege - Class in ome.model.enums
 
AdminPrivilege() - Constructor for class ome.model.enums.AdminPrivilege
 
AdminPrivilege(Long) - Constructor for class ome.model.enums.AdminPrivilege
 
AdminPrivilege(Long, boolean) - Constructor for class ome.model.enums.AdminPrivilege
Main constructor.
AdminPrivilege(String) - Constructor for class ome.model.enums.AdminPrivilege
 
AdminPrivilege.Details - Class in ome.model.enums
 
AffineTransform - Class in ome.model.roi
These filter definitions are used by the security system to eliminate non-readable objects from queries.
AffineTransform() - Constructor for class ome.model.roi.AffineTransform
 
AffineTransform(Long) - Constructor for class ome.model.roi.AffineTransform
 
AffineTransform(Long, boolean) - Constructor for class ome.model.roi.AffineTransform
Main constructor.
AffineTransform(Double, Double, Double, Double, Double, Double) - Constructor for class ome.model.roi.AffineTransform
 
AffineTransform.Details - Class in ome.model.roi
 
afterFilter(String, Object) - Method in class ome.util.ContextFilter
 
afterPropertiesSet() - Method in class ome.util.MapPut
 
airPressure - Variable in class ome.model.acquisition.ImagingEnvironment
 
AIRPRESSURE - Static variable in class ome.model.acquisition.ImagingEnvironment
 
ALGORITHM - Static variable in class ome.parameters.Parameters
named parameter "algorithm".
allExps() - Method in class ome.parameters.Parameters
 
alpha - Variable in class ome.model.core.Channel
 
ALPHA - Static variable in class ome.model.core.Channel
 
alpha - Variable in class ome.model.display.ChannelBinding
 
ALPHA - Static variable in class ome.model.display.ChannelBinding
 
alpha - Variable in class ome.model.screen.Well
 
ALPHA - Static variable in class ome.model.screen.Well
 
amplificationGain - Variable in class ome.model.acquisition.Detector
 
AMPLIFICATIONGAIN - Static variable in class ome.model.acquisition.Detector
 
ANNOTATERESTRICTION - Static variable in class ome.model.internal.Permissions
 
Annotation - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Annotation() - Constructor for class ome.model.annotations.Annotation
 
Annotation(Long) - Constructor for class ome.model.annotations.Annotation
 
Annotation(Long, boolean) - Constructor for class ome.model.annotations.Annotation
Main constructor.
Annotation.Details - Class in ome.model.annotations
 
AnnotationAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
AnnotationAnnotationLink() - Constructor for class ome.model.annotations.AnnotationAnnotationLink
 
AnnotationAnnotationLink(Long) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
 
AnnotationAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
Main constructor.
AnnotationAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
 
AnnotationAnnotationLink.Details - Class in ome.model.annotations
 
annotationLinks - Variable in class ome.model.acquisition.Detector
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
 
annotationLinks - Variable in class ome.model.acquisition.Dichroic
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
 
annotationLinks - Variable in class ome.model.acquisition.Filter
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
 
annotationLinks - Variable in class ome.model.acquisition.Instrument
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
 
annotationLinks - Variable in class ome.model.acquisition.LightPath
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
 
annotationLinks - Variable in class ome.model.acquisition.LightSource
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
 
annotationLinks - Variable in class ome.model.acquisition.Objective
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
 
annotationLinks - Variable in class ome.model.annotations.Annotation
 
ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
 
annotationLinks - Variable in class ome.model.containers.Dataset
 
ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
 
annotationLinks - Variable in class ome.model.containers.Folder
 
ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
 
annotationLinks - Variable in class ome.model.containers.Project
 
ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
 
annotationLinks - Variable in class ome.model.core.Channel
 
ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
 
annotationLinks - Variable in class ome.model.core.Image
 
ANNOTATIONLINKS - Static variable in class ome.model.core.Image
 
annotationLinks - Variable in class ome.model.core.OriginalFile
 
ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
 
annotationLinks - Variable in class ome.model.core.PlaneInfo
 
ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
 
annotationLinks - Variable in class ome.model.fs.Fileset
 
ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
 
annotationLinks - Variable in class ome.model.meta.Experimenter
 
ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
 
annotationLinks - Variable in class ome.model.meta.ExperimenterGroup
 
ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
 
annotationLinks - Variable in class ome.model.meta.Namespace
 
ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
 
annotationLinks - Variable in class ome.model.meta.Node
 
ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
 
annotationLinks - Variable in class ome.model.meta.Session
 
ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
 
annotationLinks - Variable in class ome.model.roi.Roi
 
ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
 
annotationLinks - Variable in class ome.model.roi.Shape
 
ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
 
annotationLinks - Variable in class ome.model.screen.Plate
 
ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
 
annotationLinks - Variable in class ome.model.screen.PlateAcquisition
 
ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
 
annotationLinks - Variable in class ome.model.screen.Reagent
 
ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
 
annotationLinks - Variable in class ome.model.screen.Screen
 
ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
 
annotationLinks - Variable in class ome.model.screen.Well
 
ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Detector
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Dichroic
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Instrument
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightSource
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Objective
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.annotations.Annotation
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Project
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Channel
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.OriginalFile
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.PlaneInfo
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.fs.Fileset
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Experimenter
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.ExperimenterGroup
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Namespace
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Node
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Session
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Roi
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Shape
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Plate
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.PlateAcquisition
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Reagent
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Screen
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Well
 
ApiUsageException - Exception in ome.conditions
Alerts a user to a misuse of an Omero method call.
ApiUsageException(String) - Constructor for exception ome.conditions.ApiUsageException
 
Arc - Class in ome.model.acquisition
 
Arc() - Constructor for class ome.model.acquisition.Arc
 
Arc(Long) - Constructor for class ome.model.acquisition.Arc
 
Arc(Long, boolean) - Constructor for class ome.model.acquisition.Arc
Main constructor.
Arc(ArcType) - Constructor for class ome.model.acquisition.Arc
 
archived - Variable in class ome.model.core.Image
 
ARCHIVED - Static variable in class ome.model.core.Image
 
ArcType - Class in ome.model.enums
 
ArcType() - Constructor for class ome.model.enums.ArcType
 
ArcType(Long) - Constructor for class ome.model.enums.ArcType
 
ArcType(Long, boolean) - Constructor for class ome.model.enums.ArcType
Main constructor.
ArcType(String) - Constructor for class ome.model.enums.ArcType
 
ArcType.Details - Class in ome.model.enums
 
args() - Method in class ome.util.SqlAction.DeleteLog
 
asBigInteger() - Method in class ome.util.Counter
 
assemble(Serializable, Object) - Method in class ome.model.units.GenericEnumType
 
atime - Variable in class ome.model.core.OriginalFile
 
ATIME - Static variable in class ome.model.core.OriginalFile
 
attenuation - Variable in class ome.model.acquisition.LightSettings
 
ATTENUATION - Static variable in class ome.model.acquisition.LightSettings
 
AuthenticationException - Exception in ome.conditions
Invalid username and/or credential provided.
AuthenticationException(String) - Constructor for exception ome.conditions.AuthenticationException
 
axis - Variable in class ome.model.display.ProjectionDef
 
AXIS - Static variable in class ome.model.display.ProjectionDef
 

B

backOff - Variable in exception ome.conditions.ConcurrencyException
 
BasicAnnotation - Class in ome.model.annotations
 
BasicAnnotation() - Constructor for class ome.model.annotations.BasicAnnotation
 
BasicAnnotation(Long) - Constructor for class ome.model.annotations.BasicAnnotation
 
BasicAnnotation(Long, boolean) - Constructor for class ome.model.annotations.BasicAnnotation
Main constructor.
beforeFilter(String, Object) - Method in class ome.util.ContextFilter
 
BigResult - Exception in ome.model.units
Checked exception which is thrown from unit methods which can possibly overflow.
BigResult(BigDecimal, String) - Constructor for exception ome.model.units.BigResult
 
binning - Variable in class ome.model.acquisition.DetectorSettings
 
BINNING - Static variable in class ome.model.acquisition.DetectorSettings
 
Binning - Class in ome.model.enums
 
Binning() - Constructor for class ome.model.enums.Binning
 
Binning(Long) - Constructor for class ome.model.enums.Binning
 
Binning(Long, boolean) - Constructor for class ome.model.enums.Binning
Main constructor.
Binning(String) - Constructor for class ome.model.enums.Binning
 
Binning.Details - Class in ome.model.enums
 
bit(Permissions.Flag) - Static method in class ome.model.internal.Permissions
returns the order of the bit representing the given Permissions.Flag.
bit(Permissions.Role, Permissions.Right) - Static method in class ome.model.internal.Permissions
returns the order of the bit representing the given Permissions.Role and Permissions.Right.
BIT - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
bitResolution - Variable in class ome.model.display.QuantumDef
 
BITRESOLUTION - Static variable in class ome.model.display.QuantumDef
 
bitSize - Variable in class ome.model.enums.PixelsType
 
BITSIZE - Static variable in class ome.model.enums.PixelsType
 
blue - Variable in class ome.model.core.Channel
 
BLUE - Static variable in class ome.model.core.Channel
 
blue - Variable in class ome.model.display.ChannelBinding
 
BLUE - Static variable in class ome.model.display.ChannelBinding
 
blue - Variable in class ome.model.screen.Well
 
BLUE - Static variable in class ome.model.screen.Well
 
BooleanAnnotation - Class in ome.model.annotations
 
BooleanAnnotation() - Constructor for class ome.model.annotations.BooleanAnnotation
 
BooleanAnnotation(Long) - Constructor for class ome.model.annotations.BooleanAnnotation
 
BooleanAnnotation(Long, boolean) - Constructor for class ome.model.annotations.BooleanAnnotation
Main constructor.
boolValue - Variable in class ome.model.annotations.BooleanAnnotation
 
BOOLVALUE - Static variable in class ome.model.annotations.BooleanAnnotation
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsElectricPotential
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsFrequency
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsLength
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsPower
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsPressure
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsTemperature
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsTime
 
BYTE - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
bytes - Variable in class ome.model.roi.Mask
 
BYTES - Static variable in class ome.model.roi.Mask
 
bytesPerPixel - Variable in class ome.util.PixelData
The number of bytes per pixel.
bytesPerPixel() - Method in class ome.util.PixelData
Returns the number of byte per pixel for the pixel data.

C

c2c() - Method in class ome.util.ModelMapper
TODO identity versus null mappings
cache() - Method in class ome.parameters.Parameters
Deprecated.
experimental: may be wholly removed in next major version
cacheable - Variable in class ome.parameters.Options
 
calibratedMagnification - Variable in class ome.model.acquisition.Objective
 
CALIBRATEDMAGNIFICATION - Static variable in class ome.model.acquisition.Objective
 
call(IObject) - Method in interface ome.util.CBlock
invoke this block.
call(IObject) - Method in class ome.util.IdBlock
 
CBlock<E> - Interface in ome.util
Block template used to "C"ollect the results of some function called on each IObject in a collection.
cdEnd - Variable in class ome.model.display.QuantumDef
 
CDEND - Static variable in class ome.model.display.QuantumDef
 
cdStart - Variable in class ome.model.display.QuantumDef
 
CDSTART - Static variable in class ome.model.display.QuantumDef
 
CGLIB_IDENTIFIER - Static variable in class ome.util.Utils
 
changeGroupPermissions(Long, Long) - Method in interface ome.util.SqlAction
 
changeGroupPermissions(Long, Long) - Method in class ome.util.SqlAction.Impl
 
changeTablePermissionsForGroup(String, Long, Long) - Method in interface ome.util.SqlAction
 
changeTablePermissionsForGroup(String, Long, Long) - Method in class ome.util.SqlAction.Impl
 
Channel - Class in ome.model.core
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Channel() - Constructor for class ome.model.core.Channel
 
Channel(Long) - Constructor for class ome.model.core.Channel
 
Channel(Long, boolean) - Constructor for class ome.model.core.Channel
Main constructor.
Channel(LogicalChannel, Pixels) - Constructor for class ome.model.core.Channel
 
Channel.Details - Class in ome.model.core
 
ChannelAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ChannelAnnotationLink() - Constructor for class ome.model.annotations.ChannelAnnotationLink
 
ChannelAnnotationLink(Long) - Constructor for class ome.model.annotations.ChannelAnnotationLink
 
ChannelAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ChannelAnnotationLink
Main constructor.
ChannelAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ChannelAnnotationLink
 
ChannelAnnotationLink.Details - Class in ome.model.annotations
 
ChannelBinding - Class in ome.model.display
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ChannelBinding() - Constructor for class ome.model.display.ChannelBinding
 
ChannelBinding(Long) - Constructor for class ome.model.display.ChannelBinding
 
ChannelBinding(Long, boolean) - Constructor for class ome.model.display.ChannelBinding
Main constructor.
ChannelBinding(RenderingDef, Family, Double, Double, Double, Boolean, Boolean, Integer, Integer, Integer, Integer) - Constructor for class ome.model.display.ChannelBinding
 
channelBinding - Variable in class ome.model.display.CodomainMapContext
 
CHANNELBINDING - Static variable in class ome.model.display.CodomainMapContext
 
ChannelBinding.Details - Class in ome.model.display
 
channels - Variable in class ome.model.core.LogicalChannel
 
CHANNELS - Static variable in class ome.model.core.LogicalChannel
 
channels - Variable in class ome.model.core.Pixels
 
CHANNELS - Static variable in class ome.model.core.Pixels
 
ChecksumAlgorithm - Class in ome.model.enums
 
ChecksumAlgorithm() - Constructor for class ome.model.enums.ChecksumAlgorithm
 
ChecksumAlgorithm(Long) - Constructor for class ome.model.enums.ChecksumAlgorithm
 
ChecksumAlgorithm(Long, boolean) - Constructor for class ome.model.enums.ChecksumAlgorithm
Main constructor.
ChecksumAlgorithm(String) - Constructor for class ome.model.enums.ChecksumAlgorithm
 
ChecksumAlgorithm.Details - Class in ome.model.enums
 
CHGRPRESTRICTION - Static variable in class ome.model.internal.Permissions
 
child - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
CHILD - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
child() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
child - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
CHILD - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
child() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
child - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
CHILD - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
child() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
child - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
CHILD - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
child() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
child - Variable in class ome.model.annotations.AnnotationAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
child() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
child - Variable in class ome.model.annotations.ChannelAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
child() - Method in class ome.model.annotations.ChannelAnnotationLink
 
child - Variable in class ome.model.annotations.DatasetAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
child() - Method in class ome.model.annotations.DatasetAnnotationLink
 
child - Variable in class ome.model.annotations.DetectorAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
child() - Method in class ome.model.annotations.DetectorAnnotationLink
 
child - Variable in class ome.model.annotations.DichroicAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
child() - Method in class ome.model.annotations.DichroicAnnotationLink
 
child - Variable in class ome.model.annotations.ExperimenterAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
child() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
child - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
child() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
child - Variable in class ome.model.annotations.FilesetAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
child() - Method in class ome.model.annotations.FilesetAnnotationLink
 
child - Variable in class ome.model.annotations.FilterAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.FilterAnnotationLink
 
child() - Method in class ome.model.annotations.FilterAnnotationLink
 
child - Variable in class ome.model.annotations.FolderAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.FolderAnnotationLink
 
child() - Method in class ome.model.annotations.FolderAnnotationLink
 
child - Variable in class ome.model.annotations.ImageAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ImageAnnotationLink
 
child() - Method in class ome.model.annotations.ImageAnnotationLink
 
child - Variable in class ome.model.annotations.InstrumentAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
child() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
child - Variable in class ome.model.annotations.LightPathAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
child() - Method in class ome.model.annotations.LightPathAnnotationLink
 
child - Variable in class ome.model.annotations.LightSourceAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
child() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
child - Variable in class ome.model.annotations.NamespaceAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
child() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
child - Variable in class ome.model.annotations.NodeAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.NodeAnnotationLink
 
child() - Method in class ome.model.annotations.NodeAnnotationLink
 
child - Variable in class ome.model.annotations.ObjectiveAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
child() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
child - Variable in class ome.model.annotations.OriginalFileAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
child() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
child - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
child() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
child - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
child() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
child - Variable in class ome.model.annotations.PlateAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.PlateAnnotationLink
 
child() - Method in class ome.model.annotations.PlateAnnotationLink
 
child - Variable in class ome.model.annotations.ProjectAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
child() - Method in class ome.model.annotations.ProjectAnnotationLink
 
child - Variable in class ome.model.annotations.ReagentAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
child() - Method in class ome.model.annotations.ReagentAnnotationLink
 
child - Variable in class ome.model.annotations.RoiAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.RoiAnnotationLink
 
child() - Method in class ome.model.annotations.RoiAnnotationLink
 
child - Variable in class ome.model.annotations.ScreenAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
child() - Method in class ome.model.annotations.ScreenAnnotationLink
 
child - Variable in class ome.model.annotations.SessionAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.SessionAnnotationLink
 
child() - Method in class ome.model.annotations.SessionAnnotationLink
 
child - Variable in class ome.model.annotations.ShapeAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
child() - Method in class ome.model.annotations.ShapeAnnotationLink
 
child - Variable in class ome.model.annotations.WellAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.WellAnnotationLink
 
child() - Method in class ome.model.annotations.WellAnnotationLink
 
child - Variable in class ome.model.containers.DatasetImageLink
 
CHILD - Static variable in class ome.model.containers.DatasetImageLink
 
child() - Method in class ome.model.containers.DatasetImageLink
 
child - Variable in class ome.model.containers.FolderImageLink
 
CHILD - Static variable in class ome.model.containers.FolderImageLink
 
child() - Method in class ome.model.containers.FolderImageLink
 
child - Variable in class ome.model.containers.FolderRoiLink
 
CHILD - Static variable in class ome.model.containers.FolderRoiLink
 
child() - Method in class ome.model.containers.FolderRoiLink
 
child - Variable in class ome.model.containers.ProjectDatasetLink
 
CHILD - Static variable in class ome.model.containers.ProjectDatasetLink
 
child() - Method in class ome.model.containers.ProjectDatasetLink
 
child - Variable in class ome.model.core.PixelsOriginalFileMap
 
CHILD - Static variable in class ome.model.core.PixelsOriginalFileMap
 
child() - Method in class ome.model.core.PixelsOriginalFileMap
 
child - Variable in class ome.model.fs.FilesetJobLink
 
CHILD - Static variable in class ome.model.fs.FilesetJobLink
 
child() - Method in class ome.model.fs.FilesetJobLink
 
child - Variable in class ome.model.jobs.JobOriginalFileLink
 
CHILD - Static variable in class ome.model.jobs.JobOriginalFileLink
 
child() - Method in class ome.model.jobs.JobOriginalFileLink
 
child - Variable in class ome.model.meta.GroupExperimenterMap
 
CHILD - Static variable in class ome.model.meta.GroupExperimenterMap
 
child() - Method in class ome.model.meta.GroupExperimenterMap
 
child - Variable in class ome.model.meta.ShareMember
 
CHILD - Static variable in class ome.model.meta.ShareMember
 
child() - Method in class ome.model.meta.ShareMember
 
child - Variable in class ome.model.screen.ScreenPlateLink
 
CHILD - Static variable in class ome.model.screen.ScreenPlateLink
 
child() - Method in class ome.model.screen.ScreenPlateLink
 
child - Variable in class ome.model.screen.WellReagentLink
 
CHILD - Static variable in class ome.model.screen.WellReagentLink
 
child() - Method in class ome.model.screen.WellReagentLink
 
childFolders - Variable in class ome.model.containers.Folder
 
CHILDFOLDERS - Static variable in class ome.model.containers.Folder
 
CHOWNRESTRICTION - Static variable in class ome.model.internal.Permissions
 
CLASS - Static variable in class ome.parameters.Parameters
named parameter "class".
clearAnnotationLinks() - Method in class ome.model.acquisition.Detector
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Dichroic
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Filter
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Instrument
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.LightPath
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.LightSource
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Objective
clears the set.
clearAnnotationLinks() - Method in class ome.model.annotations.Annotation
clears the set.
clearAnnotationLinks() - Method in class ome.model.containers.Dataset
clears the set.
clearAnnotationLinks() - Method in class ome.model.containers.Folder
clears the set.
clearAnnotationLinks() - Method in class ome.model.containers.Project
clears the set.
clearAnnotationLinks() - Method in class ome.model.core.Channel
clears the set.
clearAnnotationLinks() - Method in class ome.model.core.Image
clears the set.
clearAnnotationLinks() - Method in class ome.model.core.OriginalFile
clears the set.
clearAnnotationLinks() - Method in class ome.model.core.PlaneInfo
clears the set.
clearAnnotationLinks() - Method in class ome.model.fs.Fileset
clears the set.
clearAnnotationLinks() - Method in interface ome.model.IAnnotated
 
clearAnnotationLinks() - Method in class ome.model.meta.Experimenter
clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup
clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.Namespace
clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.Node
clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.Session
clears the set.
clearAnnotationLinks() - Method in class ome.model.roi.Roi
clears the set.
clearAnnotationLinks() - Method in class ome.model.roi.Shape
clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Plate
clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition
clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Reagent
clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Screen
clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Well
clears the set.
clearChannels() - Method in class ome.model.core.LogicalChannel
clears the set.
clearChannels() - Method in class ome.model.core.Pixels
clears the set.
clearChildFolders() - Method in class ome.model.containers.Folder
clears the set.
clearDatasetLinks() - Method in class ome.model.containers.Project
clears the set.
clearDatasetLinks() - Method in class ome.model.core.Image
clears the set.
clearDetector() - Method in class ome.model.acquisition.Instrument
clears the set.
clearDichroic() - Method in class ome.model.acquisition.Instrument
clears the set.
clearEmissionFilterLinks() - Method in class ome.model.acquisition.Filter
clears the set.
clearEmissionFilterLinks() - Method in class ome.model.acquisition.FilterSet
clears the set.
clearEmissionFilterLinks() - Method in class ome.model.acquisition.LightPath
clears the set.
clearEvents() - Method in class ome.model.meta.Session
clears the set.
clearExcitationFilterLinks() - Method in class ome.model.acquisition.Filter
clears the set.
clearExcitationFilterLinks() - Method in class ome.model.acquisition.FilterSet
clears the set.
clearExcitationFilterLinks() - Method in class ome.model.acquisition.LightPath
clears the set.
clearExperimenterGroupLinks() - Method in class ome.model.meta.Experimenter
clears the set.
clearExperimenterLinks() - Method in class ome.model.meta.ExperimenterGroup
clears the set.
clearFilesetEntries() - Method in class ome.model.core.OriginalFile
clears the set.
clearFilter() - Method in class ome.model.acquisition.Instrument
clears the set.
clearFiltered() - Method in class ome.model.internal.Details
all currently marked collections are released.
clearFilterSet() - Method in class ome.model.acquisition.Instrument
clears the set.
clearFolderLinks() - Method in class ome.model.core.Image
clears the set.
clearFolderLinks() - Method in class ome.model.roi.Roi
clears the set.
clearImageLinks() - Method in class ome.model.containers.Dataset
clears the set.
clearImageLinks() - Method in class ome.model.containers.Folder
clears the set.
clearImages() - Method in class ome.model.fs.Fileset
clears the set.
clearJobLinks() - Method in class ome.model.fs.Fileset
clears the set.
clearLightSource() - Method in class ome.model.acquisition.Instrument
clears the set.
clearLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation
clears the set.
clearLogs() - Method in class ome.model.meta.Event
clears the set.
clearMicrobeamManipulation() - Method in class ome.model.experiment.Experiment
clears the set.
clearObjective() - Method in class ome.model.acquisition.Instrument
clears the set.
clearOriginalFileLinks() - Method in class ome.model.core.Pixels
clears the set.
clearOriginalFileLinks() - Method in class ome.model.jobs.Job
clears the set.
clearOtf() - Method in class ome.model.acquisition.Instrument
clears the set.
clearPermissionsBit(String, long, int) - Method in interface ome.util.SqlAction
Sets the given permissions bit to 0.
clearPermissionsBit(String, long, int) - Method in class ome.util.SqlAction.Impl
 
clearPixels() - Method in class ome.model.core.Image
clears the set.
clearPixelsLinks() - Method in class ome.model.core.OriginalFile
clears the set.
clearPlaneInfo() - Method in class ome.model.core.Pixels
clears the set.
clearPlateAcquisitions() - Method in class ome.model.screen.Plate
clears the set.
clearPlateLinks() - Method in class ome.model.screen.Screen
clears the set.
clearProjections() - Method in class ome.model.display.RenderingDef
clears the set.
clearProjectLinks() - Method in class ome.model.containers.Dataset
clears the set.
clearReagentLinks() - Method in class ome.model.screen.Well
clears the set.
clearReagents() - Method in class ome.model.screen.Screen
clears the set.
clearRoiLinks() - Method in class ome.model.containers.Folder
clears the set.
clearRois() - Method in class ome.model.core.Image
clears the set.
clearScreenLinks() - Method in class ome.model.screen.Plate
clears the set.
clearSessions() - Method in class ome.model.meta.Node
clears the set.
clearSettings() - Method in class ome.model.core.Pixels
clears the set.
clearShapes() - Method in class ome.model.roi.Roi
clears the set.
clearSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding
clears the set.
clearThumbnails() - Method in class ome.model.core.Pixels
clears the set.
clearUsedFiles() - Method in class ome.model.fs.Fileset
clears the set.
clearWaveRendering() - Method in class ome.model.display.RenderingDef
clears the set.
clearWellLinks() - Method in class ome.model.screen.Reagent
clears the set.
clearWells() - Method in class ome.model.screen.Plate
clears the set.
clearWellSample() - Method in class ome.model.screen.PlateAcquisition
clears the set.
clearWellSamples() - Method in class ome.model.core.Image
clears the set.
clearWellSamples() - Method in class ome.model.screen.Well
clears the set.
clientPath - Variable in class ome.model.fs.FilesetEntry
 
CLIENTPATH - Static variable in class ome.model.fs.FilesetEntry
 
close() - Method in class ome.services.fulltext.ConfiguredAnalyzer
 
closed - Variable in class ome.model.meta.Session
 
CLOSED - Static variable in class ome.model.meta.Session
 
closeNode(String) - Method in interface ome.util.SqlAction
 
closeNode(String) - Method in class ome.util.SqlAction.Impl
 
closeNodeSessions(String) - Method in interface ome.util.SqlAction
 
closeNodeSessions(String) - Method in class ome.util.SqlAction.Impl
 
closeQuietly(Closeable) - Static method in class ome.util.Utils
 
closeSessions(String) - Method in class ome.util.actions.PostgresSqlAction
 
closeSessions(String) - Method in interface ome.util.SqlAction
 
co2percent - Variable in class ome.model.acquisition.ImagingEnvironment
 
CO2PERCENT - Static variable in class ome.model.acquisition.ImagingEnvironment
 
CodomainMapContext - Class in ome.model.display
These filter definitions are used by the security system to eliminate non-readable objects from queries.
CodomainMapContext() - Constructor for class ome.model.display.CodomainMapContext
 
CodomainMapContext(Long) - Constructor for class ome.model.display.CodomainMapContext
 
CodomainMapContext(Long, boolean) - Constructor for class ome.model.display.CodomainMapContext
Main constructor.
CodomainMapContext(ChannelBinding) - Constructor for class ome.model.display.CodomainMapContext
 
CodomainMapContext.Details - Class in ome.model.display
 
coefficient - Variable in class ome.model.display.ChannelBinding
 
COEFFICIENT - Static variable in class ome.model.display.ChannelBinding
 
COLLAB_READLINK - Static variable in class ome.model.internal.Permissions
an immutable Permissions instance with read and write permissions for group members.
COLLAB_READONLY - Static variable in class ome.model.internal.Permissions
an immutable Permissions instance with permissions for group members to read other members' data.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Detector
takes a CBlock and calls the block once for each ome.model.annotations.DetectorAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Dichroic
takes a CBlock and calls the block once for each ome.model.annotations.DichroicAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.annotations.FilterAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.annotations.InstrumentAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.annotations.LightPathAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.LightSource
takes a CBlock and calls the block once for each ome.model.annotations.LightSourceAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Objective
takes a CBlock and calls the block once for each ome.model.annotations.ObjectiveAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.annotations.Annotation
takes a CBlock and calls the block once for each ome.model.annotations.AnnotationAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.annotations.DatasetAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.annotations.FolderAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Project
takes a CBlock and calls the block once for each ome.model.annotations.ProjectAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.Channel
takes a CBlock and calls the block once for each ome.model.annotations.ChannelAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.annotations.ImageAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.OriginalFile
takes a CBlock and calls the block once for each ome.model.annotations.OriginalFileAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.PlaneInfo
takes a CBlock and calls the block once for each ome.model.annotations.PlaneInfoAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.annotations.FilesetAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in interface ome.model.IAnnotated
 
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Experimenter
takes a CBlock and calls the block once for each ome.model.annotations.ExperimenterAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
takes a CBlock and calls the block once for each ome.model.annotations.ExperimenterGroupAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Namespace
takes a CBlock and calls the block once for each ome.model.annotations.NamespaceAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Node
takes a CBlock and calls the block once for each ome.model.annotations.NodeAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Session
takes a CBlock and calls the block once for each ome.model.annotations.SessionAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.roi.Roi
takes a CBlock and calls the block once for each ome.model.annotations.RoiAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.roi.Shape
takes a CBlock and calls the block once for each ome.model.annotations.ShapeAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.annotations.PlateAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition
takes a CBlock and calls the block once for each ome.model.annotations.PlateAcquisitionAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Reagent
takes a CBlock and calls the block once for each ome.model.annotations.ReagentAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Screen
takes a CBlock and calls the block once for each ome.model.annotations.ScreenAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Well
takes a CBlock and calls the block once for each ome.model.annotations.WellAnnotationLink while collecting the results.
collectChannels(CBlock<E>) - Method in class ome.model.core.LogicalChannel
takes a CBlock and calls the block once for each ome.model.core.Channel while collecting the results.
collectChannels(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.core.Channel while collecting the results.
collectChildFolders(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.
collectDatasetLinks(CBlock<E>) - Method in class ome.model.containers.Project
takes a CBlock and calls the block once for each ome.model.containers.ProjectDatasetLink while collecting the results.
collectDatasetLinks(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.containers.DatasetImageLink while collecting the results.
collectDetector(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.Detector while collecting the results.
collectDichroic(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.Dichroic while collecting the results.
CollectedACLViolations - Exception in ome.conditions.acl
User has attempted an action which is not permitted by the Permissions of a given instance.
CollectedACLViolations(String) - Constructor for exception ome.conditions.acl.CollectedACLViolations
 
collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetEmissionFilterLink while collecting the results.
collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetEmissionFilterLink while collecting the results.
collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.acquisition.LightPathEmissionFilterLink while collecting the results.
collectEvents(CBlock<E>) - Method in class ome.model.meta.Session
takes a CBlock and calls the block once for each ome.model.meta.Event while collecting the results.
collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetExcitationFilterLink while collecting the results.
collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetExcitationFilterLink while collecting the results.
collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.acquisition.LightPathExcitationFilterLink while collecting the results.
collectFilesetEntries(CBlock<E>) - Method in class ome.model.core.OriginalFile
takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while collecting the results.
collectFilter(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
collectFilterSet(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.
collectFolderLinks(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.containers.FolderImageLink while collecting the results.
collectFolderLinks(CBlock<E>) - Method in class ome.model.roi.Roi
takes a CBlock and calls the block once for each ome.model.containers.FolderRoiLink while collecting the results.
collectGroupExperimenterMap(CBlock<E>) - Method in class ome.model.meta.Experimenter
takes a CBlock and calls the block once for each ome.model.meta.GroupExperimenterMap while collecting the results.
collectGroupExperimenterMap(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
takes a CBlock and calls the block once for each ome.model.meta.GroupExperimenterMap while collecting the results.
collectImageLinks(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.containers.DatasetImageLink while collecting the results.
collectImageLinks(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.containers.FolderImageLink while collecting the results.
collectImages(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.
collectJobLinks(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.fs.FilesetJobLink while collecting the results.
collectLightSource(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.LightSource while collecting the results.
collectLightSourceSettings(CBlock<E>) - Method in class ome.model.experiment.MicrobeamManipulation
takes a CBlock and calls the block once for each ome.model.acquisition.LightSettings while collecting the results.
collectLogs(CBlock<E>) - Method in class ome.model.meta.Event
takes a CBlock and calls the block once for each ome.model.meta.EventLog while collecting the results.
collectMicrobeamManipulation(CBlock<E>) - Method in class ome.model.experiment.Experiment
takes a CBlock and calls the block once for each ome.model.experiment.MicrobeamManipulation while collecting the results.
collectObjective(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.Objective while collecting the results.
collectOriginalFileLinks(CBlock<E>) - Method in class ome.model.jobs.Job
takes a CBlock and calls the block once for each ome.model.jobs.JobOriginalFileLink while collecting the results.
collectOtf(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.OTF while collecting the results.
collectPixels(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.core.Pixels while collecting the results.
collectPixelsFileMaps(CBlock<E>) - Method in class ome.model.core.OriginalFile
takes a CBlock and calls the block once for each ome.model.core.PixelsOriginalFileMap while collecting the results.
collectPixelsFileMaps(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.core.PixelsOriginalFileMap while collecting the results.
collectPlaneInfo(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.core.PlaneInfo while collecting the results.
collectPlateAcquisitions(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.screen.PlateAcquisition while collecting the results.
collectPlateLinks(CBlock<E>) - Method in class ome.model.screen.Screen
takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results.
collectProjections(CBlock<E>) - Method in class ome.model.display.RenderingDef
takes a CBlock and calls the block once for each ome.model.display.ProjectionDef while collecting the results.
collectProjectLinks(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.containers.ProjectDatasetLink while collecting the results.
collectReagentLinks(CBlock<E>) - Method in class ome.model.screen.Well
takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while collecting the results.
collectReagents(CBlock<E>) - Method in class ome.model.screen.Screen
takes a CBlock and calls the block once for each ome.model.screen.Reagent while collecting the results.
collectRoiLinks(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.containers.FolderRoiLink while collecting the results.
collectRois(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.roi.Roi while collecting the results.
collectScreenLinks(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results.
collectSessions(CBlock<E>) - Method in class ome.model.meta.Node
takes a CBlock and calls the block once for each ome.model.meta.Session while collecting the results.
collectSettings(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.display.RenderingDef while collecting the results.
collectShapes(CBlock<E>) - Method in class ome.model.roi.Roi
takes a CBlock and calls the block once for each ome.model.roi.Shape while collecting the results.
collectSpatialDomainEnhancement(CBlock<E>) - Method in class ome.model.display.ChannelBinding
takes a CBlock and calls the block once for each ome.model.display.CodomainMapContext while collecting the results.
collectThumbnails(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.display.Thumbnail while collecting the results.
collectUsedFiles(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while collecting the results.
collectWaveRendering(CBlock<E>) - Method in class ome.model.display.RenderingDef
takes a CBlock and calls the block once for each ome.model.display.ChannelBinding while collecting the results.
collectWellLinks(CBlock<E>) - Method in class ome.model.screen.Reagent
takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while collecting the results.
collectWells(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.
collectWellSample(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition
takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.
collectWellSamples(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.
collectWellSamples(CBlock<E>) - Method in class ome.model.screen.Well
takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.
column - Variable in class ome.model.screen.Well
 
COLUMN - Static variable in class ome.model.screen.Well
 
columnNamingConvention - Variable in class ome.model.screen.Plate
 
COLUMNNAMINGCONVENTION - Static variable in class ome.model.screen.Plate
 
columns - Variable in class ome.model.screen.Plate
 
COLUMNS - Static variable in class ome.model.screen.Plate
 
CommentAnnotation - Class in ome.model.annotations
 
CommentAnnotation() - Constructor for class ome.model.annotations.CommentAnnotation
 
CommentAnnotation(Long) - Constructor for class ome.model.annotations.CommentAnnotation
 
CommentAnnotation(Long, boolean) - Constructor for class ome.model.annotations.CommentAnnotation
Main constructor.
compression - Variable in class ome.model.display.RenderingDef
 
COMPRESSION - Static variable in class ome.model.display.RenderingDef
 
ConcurrencyException - Exception in ome.conditions
Error due to simultaneous access of some resource.
ConcurrencyException(String, long) - Constructor for exception ome.conditions.ConcurrencyException
 
config - Variable in class ome.model.meta.Experimenter
 
CONFIG - Static variable in class ome.model.meta.Experimenter
 
config - Variable in class ome.model.meta.ExperimenterGroup
 
CONFIG - Static variable in class ome.model.meta.ExperimenterGroup
 
CONFIG_KEY - Static variable in class ome.util.PixelData
 
configure(Type, Properties, Dialect) - Method in class ome.util.TableIdGenerator
 
ConfiguredAnalyzer - Class in ome.services.fulltext
A full-text search analyzer usable by the OMERO model.
ConfiguredAnalyzer() - Constructor for class ome.services.fulltext.ConfiguredAnalyzer
Construct an analyzer wrapping the same class as previously passed to ConfiguredAnalyzer.ConfiguredAnalyzer(Class).
ConfiguredAnalyzer(Class<? extends Analyzer>) - Constructor for class ome.services.fulltext.ConfiguredAnalyzer
Construct an analyzer wrapping the given class.
configValue(String) - Method in interface ome.util.SqlAction
 
configValue(String) - Method in class ome.util.SqlAction.Impl
 
conn - Variable in class ome.model.meta.Node
 
CONN - Static variable in class ome.model.meta.Node
 
constant - Variable in class ome.model.display.PlaneSlicingContext
 
CONSTANT - Static variable in class ome.model.display.PlaneSlicingContext
 
containingEvent - Variable in class ome.model.meta.Event
 
CONTAININGEVENT - Static variable in class ome.model.meta.Event
 
contextAt(int) - Method in class ome.model.internal.Details
 
ContextFilter - Class in ome.util
modified (hierarchical) visitor pattern.
ContextFilter() - Constructor for class ome.util.ContextFilter
 
contexts - Variable in class ome.model.internal.Details
 
contrastMethod - Variable in class ome.model.core.LogicalChannel
 
CONTRASTMETHOD - Static variable in class ome.model.core.LogicalChannel
 
ContrastMethod - Class in ome.model.enums
 
ContrastMethod() - Constructor for class ome.model.enums.ContrastMethod
 
ContrastMethod(Long) - Constructor for class ome.model.enums.ContrastMethod
 
ContrastMethod(Long, boolean) - Constructor for class ome.model.enums.ContrastMethod
Main constructor.
ContrastMethod(String) - Constructor for class ome.model.enums.ContrastMethod
 
ContrastMethod.Details - Class in ome.model.enums
 
ContrastStretchingContext - Class in ome.model.display
 
ContrastStretchingContext() - Constructor for class ome.model.display.ContrastStretchingContext
 
ContrastStretchingContext(Long) - Constructor for class ome.model.display.ContrastStretchingContext
 
ContrastStretchingContext(Long, boolean) - Constructor for class ome.model.display.ContrastStretchingContext
Main constructor.
ContrastStretchingContext(Integer, Integer, Integer, Integer) - Constructor for class ome.model.display.ContrastStretchingContext
 
Conversion - Class in ome.model.units
Base-functor like object which can be used for preparing complex equations for converting from one unit to another.
Conversion(Conversion...) - Constructor for class ome.model.units.Conversion
Primary constructor for a Conversion object.
Conversion.Add - Class in ome.model.units
Sums all Conversion instances via BigDecimal.add(BigDecimal).
Conversion.Int - Class in ome.model.units
Simply is a representation of a possibly large integer.
Conversion.Mul - Class in ome.model.units
Multiplies all Conversion instances via BigDecimal.multiply(BigDecimal).
Conversion.Pow - Class in ome.model.units
Exponentiates two Conversion instances via BigDecimal.pow(int).
Conversion.Rat - Class in ome.model.units
Divides two Conversion instances via BigDecimal.divide(BigDecimal, MathContext).
Conversion.Sym - Class in ome.model.units
Simply represents the variable of the source unit so that Conversion.Sym.convert(double) just returns the value passed in.
conversions - Variable in class ome.model.units.Conversion
Conversions, if any, which are passed into the constructor of this instance.
convert(double) - Method in class ome.model.units.Conversion.Add
 
convert(double) - Method in class ome.model.units.Conversion
Primary operator for Conversion instances.
convert(double) - Method in class ome.model.units.Conversion.Int
Returns a BigDecimal representation of this int.
convert(double) - Method in class ome.model.units.Conversion.Mul
 
convert(double) - Method in class ome.model.units.Conversion.Pow
 
convert(double) - Method in class ome.model.units.Conversion.Rat
 
convert(double) - Method in class ome.model.units.Conversion.Sym
 
convertElectricPotential(ElectricPotential) - Static method in class ome.model.units.ElectricPotential
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertElectricPotential(ElectricPotential, Unit<ElectricPotential>) - Static method in class ome.model.units.ElectricPotential
 
convertElectricPotential(ElectricPotential, String) - Static method in class ome.model.units.ElectricPotential
 
convertFrequency(Frequency) - Static method in class ome.model.units.Frequency
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertFrequency(Frequency, Unit<Frequency>) - Static method in class ome.model.units.Frequency
 
convertFrequency(Frequency, String) - Static method in class ome.model.units.Frequency
 
convertLength(Length) - Static method in class ome.model.units.Length
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertLength(Length, Unit<Length>) - Static method in class ome.model.units.Length
 
convertLength(Length, String) - Static method in class ome.model.units.Length
 
convertPower(Power) - Static method in class ome.model.units.Power
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertPower(Power, Unit<Power>) - Static method in class ome.model.units.Power
 
convertPower(Power, String) - Static method in class ome.model.units.Power
 
convertPressure(Pressure) - Static method in class ome.model.units.Pressure
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertPressure(Pressure, Unit<Pressure>) - Static method in class ome.model.units.Pressure
 
convertPressure(Pressure, String) - Static method in class ome.model.units.Pressure
 
convertTemperature(Temperature) - Static method in class ome.model.units.Temperature
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertTemperature(Temperature, Unit<Temperature>) - Static method in class ome.model.units.Temperature
 
convertTemperature(Temperature, String) - Static method in class ome.model.units.Temperature
 
convertTime(Time) - Static method in class ome.model.units.Time
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertTime(Time, Unit<Time>) - Static method in class ome.model.units.Time
 
convertTime(Time, String) - Static method in class ome.model.units.Time
 
copy() - Method in class ome.model.internal.Details
 
copy(Details) - Method in class ome.model.internal.Details
Method which takes all field values from the given Details instance and copies them into the current instance.
copy(T) - Method in class ome.util.ShallowCopy
 
copyExtendedRestrictions() - Method in class ome.model.internal.Permissions
Produce a copy of restrictions for use elsewhere.
copyObject(Filterable, ModelMapper) - Method in interface ome.model.ModelBased
 
copyRestrictions() - Method in class ome.model.internal.Permissions
Deprecated.
copyRestrictions(String[]) - Method in class ome.model.internal.Permissions
Safely copy the source array.
copyRestrictions(boolean[], String[]) - Method in class ome.model.internal.Permissions
Deprecated.
copyRestrictions(int, Set<String>) - Method in class ome.model.internal.Permissions
Copy restrictions based on the integer returned by BasicACLVoter.
copyWhereUnset(Details, Details) - Method in class ome.model.internal.Details
For any field of this which is null (and is NOT null on mask -- assuming mask is not null), copy the same value from copyFrom into this object.
correction - Variable in class ome.model.acquisition.Objective
 
CORRECTION - Static variable in class ome.model.acquisition.Objective
 
Correction - Class in ome.model.enums
 
Correction() - Constructor for class ome.model.enums.Correction
 
Correction(Long) - Constructor for class ome.model.enums.Correction
 
Correction(Long, boolean) - Constructor for class ome.model.enums.Correction
Main constructor.
Correction(String) - Constructor for class ome.model.enums.Correction
 
Correction.Details - Class in ome.model.enums
 
correctionCollar - Variable in class ome.model.acquisition.ObjectiveSettings
 
CORRECTIONCOLLAR - Static variable in class ome.model.acquisition.ObjectiveSettings
 
CountCollectionPersister - Class in ome.util
CollectionPersister which knows how to handle the count views generated by dsl/resources/ome/dsl/views.dm.
CountCollectionPersister(Collection, CollectionRegionAccessStrategy, Configuration, SessionFactoryImplementor) - Constructor for class ome.util.CountCollectionPersister
 
Counter - Class in ome.util
A simple integral counter that can be incremented.
Counter() - Constructor for class ome.util.Counter
Create a new counter starting at zero.
countFormat(String) - Method in class ome.util.actions.PostgresSqlAction
 
countFormat(String) - Method in interface ome.util.SqlAction
 
create() - Static method in class ome.model.internal.Details
Call Details.create(Object[]) with null.
create(Object[]) - Static method in class ome.model.internal.Details
Factory method which returns a Details implementation for passing in API calls, but cannot be stored within an IObject instance.
createBufferedImage(int[], int, int) - Static method in class ome.util.ImageUtil
Creates a buffered image from a rendering engine RGB buffer without data copying.
createIdsTempTable(Collection<Long>) - Method in interface ome.util.SqlAction
Creates a temporary table filled with the given ids and returns its name.
createIdsTempTable(Collection<Long>) - Method in class ome.util.SqlAction.Impl
 
createInsertTrigger(String, String, String) - Method in interface ome.util.SqlAction
Creates an insert trigger of the given name, for the given table, with the given procedure.
createInsertTrigger(String, String, String) - Method in class ome.util.SqlAction.Impl
 
createSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction
 
createSavepoint(String) - Method in interface ome.util.SqlAction
 
CREATIONEVENT - Static variable in class ome.model.internal.Details
 
ctime - Variable in class ome.model.core.OriginalFile
 
CTIME - Static variable in class ome.model.core.OriginalFile
 
currentContext() - Method in class ome.util.ContextFilter
 
currentPatch - Variable in class ome.model.meta.DBPatch
 
CURRENTPATCH - Static variable in class ome.model.meta.DBPatch
 
currentUserNames() - Method in class ome.util.actions.PostgresSqlAction
 
currentUserNames() - Method in interface ome.util.SqlAction
 
currentVersion - Variable in class ome.model.meta.DBPatch
 
CURRENTVERSION - Static variable in class ome.model.meta.DBPatch
 
currValue(String) - Method in class ome.util.actions.PostgresSqlAction
 
currValue(String) - Method in interface ome.util.SqlAction
 
cutIn - Variable in class ome.model.acquisition.TransmittanceRange
 
CUTIN - Static variable in class ome.model.acquisition.TransmittanceRange
 
cutInTolerance - Variable in class ome.model.acquisition.TransmittanceRange
 
CUTINTOLERANCE - Static variable in class ome.model.acquisition.TransmittanceRange
 
cutOut - Variable in class ome.model.acquisition.TransmittanceRange
 
CUTOUT - Static variable in class ome.model.acquisition.TransmittanceRange
 
cutOutTolerance - Variable in class ome.model.acquisition.TransmittanceRange
 
CUTOUTTOLERANCE - Static variable in class ome.model.acquisition.TransmittanceRange
 

D

d - Variable in class ome.model.roi.Path
Deprecated.
 
D - Static variable in class ome.model.roi.Path
Deprecated.
 
data - Variable in class ome.model.meta.Share
 
DATA - Static variable in class ome.model.meta.Share
 
data - Variable in class ome.util.PixelData
The pixels data backing buffer.
DatabaseBusyException - Exception in ome.conditions
No connections are currently available for the database.
DatabaseBusyException(String, long) - Constructor for exception ome.conditions.DatabaseBusyException
 
Dataset - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Dataset() - Constructor for class ome.model.containers.Dataset
 
Dataset(Long) - Constructor for class ome.model.containers.Dataset
 
Dataset(Long, boolean) - Constructor for class ome.model.containers.Dataset
Main constructor.
Dataset(String) - Constructor for class ome.model.containers.Dataset
 
Dataset.Details - Class in ome.model.containers
 
DatasetAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
DatasetAnnotationLink() - Constructor for class ome.model.annotations.DatasetAnnotationLink
 
DatasetAnnotationLink(Long) - Constructor for class ome.model.annotations.DatasetAnnotationLink
 
DatasetAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DatasetAnnotationLink
Main constructor.
DatasetAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DatasetAnnotationLink
 
DatasetAnnotationLink.Details - Class in ome.model.annotations
 
DatasetImageLink - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
DatasetImageLink() - Constructor for class ome.model.containers.DatasetImageLink
 
DatasetImageLink(Long) - Constructor for class ome.model.containers.DatasetImageLink
 
DatasetImageLink(Long, boolean) - Constructor for class ome.model.containers.DatasetImageLink
Main constructor.
DatasetImageLink(IObject, IObject) - Constructor for class ome.model.containers.DatasetImageLink
 
DatasetImageLink.Details - Class in ome.model.containers
 
datasetLinks - Variable in class ome.model.containers.Project
 
DATASETLINKS - Static variable in class ome.model.containers.Project
 
datasetLinks - Variable in class ome.model.core.Image
 
DATASETLINKS - Static variable in class ome.model.core.Image
 
DATASETLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Project
 
DATASETLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
 
DBPatch - Class in ome.model.meta
 
DBPatch() - Constructor for class ome.model.meta.DBPatch
 
DBPatch(Long) - Constructor for class ome.model.meta.DBPatch
 
DBPatch(Long, boolean) - Constructor for class ome.model.meta.DBPatch
Main constructor.
DBPatch(String, Integer, String, Integer) - Constructor for class ome.model.meta.DBPatch
 
DBPatch.Details - Class in ome.model.meta
 
dbUuid() - Method in class ome.util.actions.PostgresSqlAction
 
dbUuid() - Method in interface ome.util.SqlAction
 
dbVersion() - Method in class ome.util.actions.PostgresSqlAction
 
dbVersion() - Method in interface ome.util.SqlAction
 
deepCopy(Object) - Method in class ome.model.units.GenericEnumType
 
defaultEventType - Variable in class ome.model.meta.Session
 
DEFAULTEVENTTYPE - Static variable in class ome.model.meta.Session
 
defaultSample - Variable in class ome.model.screen.Plate
 
DEFAULTSAMPLE - Static variable in class ome.model.screen.Plate
 
defaultT - Variable in class ome.model.display.RenderingDef
 
DEFAULTT - Static variable in class ome.model.display.RenderingDef
 
defaultZ - Variable in class ome.model.display.RenderingDef
 
DEFAULTZ - Static variable in class ome.model.display.RenderingDef
 
deferConstraints() - Method in class ome.util.actions.PostgresSqlAction
 
deferConstraints() - Method in interface ome.util.SqlAction
 
delConfigValue(String) - Method in interface ome.util.SqlAction
 
delConfigValue(String) - Method in class ome.util.SqlAction.Impl
 
delCurrentEventLog(String) - Method in class ome.util.actions.PostgresSqlAction
 
delCurrentEventLog(String) - Method in interface ome.util.SqlAction
 
delCurrentEventLog(String) - Method in class ome.util.SqlAction.Impl
 
deleteCurrentAdminPrivileges() - Method in interface ome.util.SqlAction
Delete the current light administrator privileges for the current transaction.
deleteCurrentAdminPrivileges() - Method in class ome.util.SqlAction.Impl
 
DeleteLog() - Constructor for class ome.util.SqlAction.DeleteLog
 
deleteOldAdminPrivileges(Collection<Long>) - Method in interface ome.util.SqlAction
Delete the current light administrator privileges for the given transactions.
deleteOldAdminPrivileges(Collection<Long>) - Method in class ome.util.SqlAction.Impl
 
deleteRepoDeleteLogs(SqlAction.DeleteLog) - Method in interface ome.util.SqlAction
Delete all SqlAction.DeleteLog entries which match all of the non-null fields provided in the template.
deleteRepoDeleteLogs(SqlAction.DeleteLog) - Method in class ome.util.SqlAction.Impl
 
DELETERESTRICTION - Static variable in class ome.model.internal.Permissions
 
deleteRows(PersistentCollection, Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister
 
deltaT - Variable in class ome.model.core.PlaneInfo
 
DELTAT - Static variable in class ome.model.core.PlaneInfo
 
description - Variable in class ome.model.annotations.Annotation
 
DESCRIPTION - Static variable in class ome.model.annotations.Annotation
 
description - Variable in class ome.model.containers.Dataset
 
DESCRIPTION - Static variable in class ome.model.containers.Dataset
 
description - Variable in class ome.model.containers.Folder
 
DESCRIPTION - Static variable in class ome.model.containers.Folder
 
description - Variable in class ome.model.containers.Project
 
DESCRIPTION - Static variable in class ome.model.containers.Project
 
description - Variable in class ome.model.core.Image
 
DESCRIPTION - Static variable in class ome.model.core.Image
 
description - Variable in class ome.model.experiment.Experiment
 
DESCRIPTION - Static variable in class ome.model.experiment.Experiment
 
description - Variable in class ome.model.experiment.MicrobeamManipulation
 
DESCRIPTION - Static variable in class ome.model.experiment.MicrobeamManipulation
 
description - Variable in class ome.model.jobs.ScriptJob
 
DESCRIPTION - Static variable in class ome.model.jobs.ScriptJob
 
description - Variable in class ome.model.meta.ExperimenterGroup
 
DESCRIPTION - Static variable in class ome.model.meta.ExperimenterGroup
 
description - Variable in class ome.model.meta.Namespace
 
DESCRIPTION - Static variable in class ome.model.meta.Namespace
 
description - Variable in class ome.model.roi.Roi
 
DESCRIPTION - Static variable in class ome.model.roi.Roi
 
description - Variable in class ome.model.screen.Plate
 
DESCRIPTION - Static variable in class ome.model.screen.Plate
 
description - Variable in class ome.model.screen.PlateAcquisition
 
DESCRIPTION - Static variable in class ome.model.screen.PlateAcquisition
 
description - Variable in class ome.model.screen.Reagent
 
DESCRIPTION - Static variable in class ome.model.screen.Reagent
 
description - Variable in class ome.model.screen.Screen
 
DESCRIPTION - Static variable in class ome.model.screen.Screen
 
details - Variable in class ome.model.acquisition.Detector
 
DETAILS - Static variable in class ome.model.acquisition.Detector
 
Details() - Constructor for class ome.model.acquisition.Detector.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Detector.Details
 
details - Variable in class ome.model.acquisition.DetectorSettings
 
DETAILS - Static variable in class ome.model.acquisition.DetectorSettings
 
Details() - Constructor for class ome.model.acquisition.DetectorSettings.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.DetectorSettings.Details
 
details - Variable in class ome.model.acquisition.Dichroic
 
DETAILS - Static variable in class ome.model.acquisition.Dichroic
 
Details() - Constructor for class ome.model.acquisition.Dichroic.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Dichroic.Details
 
details - Variable in class ome.model.acquisition.Filter
 
DETAILS - Static variable in class ome.model.acquisition.Filter
 
Details() - Constructor for class ome.model.acquisition.Filter.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Filter.Details
 
details - Variable in class ome.model.acquisition.FilterSet
 
DETAILS - Static variable in class ome.model.acquisition.FilterSet
 
Details() - Constructor for class ome.model.acquisition.FilterSet.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.FilterSet.Details
 
details - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
DETAILS - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
Details() - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
details - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
DETAILS - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
Details() - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
details - Variable in class ome.model.acquisition.ImagingEnvironment
 
DETAILS - Static variable in class ome.model.acquisition.ImagingEnvironment
 
Details() - Constructor for class ome.model.acquisition.ImagingEnvironment.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.ImagingEnvironment.Details
 
details - Variable in class ome.model.acquisition.Instrument
 
DETAILS - Static variable in class ome.model.acquisition.Instrument
 
Details() - Constructor for class ome.model.acquisition.Instrument.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Instrument.Details
 
details - Variable in class ome.model.acquisition.LightPath
 
DETAILS - Static variable in class ome.model.acquisition.LightPath
 
Details() - Constructor for class ome.model.acquisition.LightPath.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.LightPath.Details
 
details - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
DETAILS - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
Details() - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
details - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
DETAILS - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
Details() - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
details - Variable in class ome.model.acquisition.LightSettings
 
DETAILS - Static variable in class ome.model.acquisition.LightSettings
 
Details() - Constructor for class ome.model.acquisition.LightSettings.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.LightSettings.Details
 
details - Variable in class ome.model.acquisition.LightSource
 
DETAILS - Static variable in class ome.model.acquisition.LightSource
 
Details() - Constructor for class ome.model.acquisition.LightSource.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.LightSource.Details
 
details - Variable in class ome.model.acquisition.Microscope
 
DETAILS - Static variable in class ome.model.acquisition.Microscope
 
Details() - Constructor for class ome.model.acquisition.Microscope.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Microscope.Details
 
details - Variable in class ome.model.acquisition.Objective
 
DETAILS - Static variable in class ome.model.acquisition.Objective
 
Details() - Constructor for class ome.model.acquisition.Objective.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Objective.Details
 
details - Variable in class ome.model.acquisition.ObjectiveSettings
 
DETAILS - Static variable in class ome.model.acquisition.ObjectiveSettings
 
Details() - Constructor for class ome.model.acquisition.ObjectiveSettings.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.ObjectiveSettings.Details
 
details - Variable in class ome.model.acquisition.OTF
 
DETAILS - Static variable in class ome.model.acquisition.OTF
 
Details() - Constructor for class ome.model.acquisition.OTF.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.OTF.Details
 
details - Variable in class ome.model.acquisition.StageLabel
 
DETAILS - Static variable in class ome.model.acquisition.StageLabel
 
Details() - Constructor for class ome.model.acquisition.StageLabel.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.StageLabel.Details
 
details - Variable in class ome.model.acquisition.TransmittanceRange
 
DETAILS - Static variable in class ome.model.acquisition.TransmittanceRange
 
Details() - Constructor for class ome.model.acquisition.TransmittanceRange.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.TransmittanceRange.Details
 
details - Variable in class ome.model.annotations.Annotation
 
DETAILS - Static variable in class ome.model.annotations.Annotation
 
Details() - Constructor for class ome.model.annotations.Annotation.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.Annotation.Details
 
details - Variable in class ome.model.annotations.AnnotationAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
Details() - Constructor for class ome.model.annotations.AnnotationAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.AnnotationAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ChannelAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ChannelAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ChannelAnnotationLink.Details
 
details - Variable in class ome.model.annotations.DatasetAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
Details() - Constructor for class ome.model.annotations.DatasetAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.DatasetAnnotationLink.Details
 
details - Variable in class ome.model.annotations.DetectorAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
Details() - Constructor for class ome.model.annotations.DetectorAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.DetectorAnnotationLink.Details
 
details - Variable in class ome.model.annotations.DichroicAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
Details() - Constructor for class ome.model.annotations.DichroicAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.DichroicAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ExperimenterAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ExperimenterAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
details - Variable in class ome.model.annotations.FilesetAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
Details() - Constructor for class ome.model.annotations.FilesetAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.FilesetAnnotationLink.Details
 
details - Variable in class ome.model.annotations.FilterAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.FilterAnnotationLink
 
Details() - Constructor for class ome.model.annotations.FilterAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.FilterAnnotationLink.Details
 
details - Variable in class ome.model.annotations.FolderAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.FolderAnnotationLink
 
Details() - Constructor for class ome.model.annotations.FolderAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.FolderAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ImageAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ImageAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ImageAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ImageAnnotationLink.Details
 
details - Variable in class ome.model.annotations.InstrumentAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
Details() - Constructor for class ome.model.annotations.InstrumentAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.InstrumentAnnotationLink.Details
 
details - Variable in class ome.model.annotations.LightPathAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
Details() - Constructor for class ome.model.annotations.LightPathAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.LightPathAnnotationLink.Details
 
details - Variable in class ome.model.annotations.LightSourceAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
Details() - Constructor for class ome.model.annotations.LightSourceAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.LightSourceAnnotationLink.Details
 
details - Variable in class ome.model.annotations.NamespaceAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
Details() - Constructor for class ome.model.annotations.NamespaceAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.NamespaceAnnotationLink.Details
 
details - Variable in class ome.model.annotations.NodeAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.NodeAnnotationLink
 
Details() - Constructor for class ome.model.annotations.NodeAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.NodeAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ObjectiveAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ObjectiveAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink.Details
 
details - Variable in class ome.model.annotations.OriginalFileAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
Details() - Constructor for class ome.model.annotations.OriginalFileAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink.Details
 
details - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
Details() - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
details - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
Details() - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
details - Variable in class ome.model.annotations.PlateAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.PlateAnnotationLink
 
Details() - Constructor for class ome.model.annotations.PlateAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.PlateAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ProjectAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ProjectAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ProjectAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ReagentAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ReagentAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ReagentAnnotationLink.Details
 
details - Variable in class ome.model.annotations.RoiAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.RoiAnnotationLink
 
Details() - Constructor for class ome.model.annotations.RoiAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.RoiAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ScreenAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ScreenAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ScreenAnnotationLink.Details
 
details - Variable in class ome.model.annotations.SessionAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.SessionAnnotationLink
 
Details() - Constructor for class ome.model.annotations.SessionAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.SessionAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ShapeAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ShapeAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ShapeAnnotationLink.Details
 
details - Variable in class ome.model.annotations.WellAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.WellAnnotationLink
 
Details() - Constructor for class ome.model.annotations.WellAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.WellAnnotationLink.Details
 
details - Variable in class ome.model.containers.Dataset
 
DETAILS - Static variable in class ome.model.containers.Dataset
 
Details() - Constructor for class ome.model.containers.Dataset.Details
 
Details(Object[]) - Constructor for class ome.model.containers.Dataset.Details
 
details - Variable in class ome.model.containers.DatasetImageLink
 
DETAILS - Static variable in class ome.model.containers.DatasetImageLink
 
Details() - Constructor for class ome.model.containers.DatasetImageLink.Details
 
Details(Object[]) - Constructor for class ome.model.containers.DatasetImageLink.Details
 
details - Variable in class ome.model.containers.Folder
 
DETAILS - Static variable in class ome.model.containers.Folder
 
Details() - Constructor for class ome.model.containers.Folder.Details
 
Details(Object[]) - Constructor for class ome.model.containers.Folder.Details
 
details - Variable in class ome.model.containers.FolderImageLink
 
DETAILS - Static variable in class ome.model.containers.FolderImageLink
 
Details() - Constructor for class ome.model.containers.FolderImageLink.Details
 
Details(Object[]) - Constructor for class ome.model.containers.FolderImageLink.Details
 
details - Variable in class ome.model.containers.FolderRoiLink
 
DETAILS - Static variable in class ome.model.containers.FolderRoiLink
 
Details() - Constructor for class ome.model.containers.FolderRoiLink.Details
 
Details(Object[]) - Constructor for class ome.model.containers.FolderRoiLink.Details
 
details - Variable in class ome.model.containers.Project
 
DETAILS - Static variable in class ome.model.containers.Project
 
Details() - Constructor for class ome.model.containers.Project.Details
 
Details(Object[]) - Constructor for class ome.model.containers.Project.Details
 
details - Variable in class ome.model.containers.ProjectDatasetLink
 
DETAILS - Static variable in class ome.model.containers.ProjectDatasetLink
 
Details() - Constructor for class ome.model.containers.ProjectDatasetLink.Details
 
Details(Object[]) - Constructor for class ome.model.containers.ProjectDatasetLink.Details
 
details - Variable in class ome.model.core.Channel
 
DETAILS - Static variable in class ome.model.core.Channel
 
Details() - Constructor for class ome.model.core.Channel.Details
 
Details(Object[]) - Constructor for class ome.model.core.Channel.Details
 
details - Variable in class ome.model.core.Image
 
DETAILS - Static variable in class ome.model.core.Image
 
Details() - Constructor for class ome.model.core.Image.Details
 
Details(Object[]) - Constructor for class ome.model.core.Image.Details
 
details - Variable in class ome.model.core.LogicalChannel
 
DETAILS - Static variable in class ome.model.core.LogicalChannel
 
Details() - Constructor for class ome.model.core.LogicalChannel.Details
 
Details(Object[]) - Constructor for class ome.model.core.LogicalChannel.Details
 
details - Variable in class ome.model.core.OriginalFile
 
DETAILS - Static variable in class ome.model.core.OriginalFile
 
Details() - Constructor for class ome.model.core.OriginalFile.Details
 
Details(Object[]) - Constructor for class ome.model.core.OriginalFile.Details
 
details - Variable in class ome.model.core.Pixels
 
DETAILS - Static variable in class ome.model.core.Pixels
 
Details() - Constructor for class ome.model.core.Pixels.Details
 
Details(Object[]) - Constructor for class ome.model.core.Pixels.Details
 
details - Variable in class ome.model.core.PixelsOriginalFileMap
 
DETAILS - Static variable in class ome.model.core.PixelsOriginalFileMap
 
Details() - Constructor for class ome.model.core.PixelsOriginalFileMap.Details
 
Details(Object[]) - Constructor for class ome.model.core.PixelsOriginalFileMap.Details
 
details - Variable in class ome.model.core.PlaneInfo
 
DETAILS - Static variable in class ome.model.core.PlaneInfo
 
Details() - Constructor for class ome.model.core.PlaneInfo.Details
 
Details(Object[]) - Constructor for class ome.model.core.PlaneInfo.Details
 
details - Variable in class ome.model.display.ChannelBinding
 
DETAILS - Static variable in class ome.model.display.ChannelBinding
 
Details() - Constructor for class ome.model.display.ChannelBinding.Details
 
Details(Object[]) - Constructor for class ome.model.display.ChannelBinding.Details
 
details - Variable in class ome.model.display.CodomainMapContext
 
DETAILS - Static variable in class ome.model.display.CodomainMapContext
 
Details() - Constructor for class ome.model.display.CodomainMapContext.Details
 
Details(Object[]) - Constructor for class ome.model.display.CodomainMapContext.Details
 
details - Variable in class ome.model.display.ProjectionDef
 
DETAILS - Static variable in class ome.model.display.ProjectionDef
 
Details() - Constructor for class ome.model.display.ProjectionDef.Details
 
Details(Object[]) - Constructor for class ome.model.display.ProjectionDef.Details
 
details - Variable in class ome.model.display.QuantumDef
 
DETAILS - Static variable in class ome.model.display.QuantumDef
 
Details() - Constructor for class ome.model.display.QuantumDef.Details
 
Details(Object[]) - Constructor for class ome.model.display.QuantumDef.Details
 
details - Variable in class ome.model.display.RenderingDef
 
DETAILS - Static variable in class ome.model.display.RenderingDef
 
Details() - Constructor for class ome.model.display.RenderingDef.Details
 
Details(Object[]) - Constructor for class ome.model.display.RenderingDef.Details
 
details - Variable in class ome.model.display.Thumbnail
 
DETAILS - Static variable in class ome.model.display.Thumbnail
 
Details() - Constructor for class ome.model.display.Thumbnail.Details
 
Details(Object[]) - Constructor for class ome.model.display.Thumbnail.Details
 
details - Variable in class ome.model.enums.AcquisitionMode
 
DETAILS - Static variable in class ome.model.enums.AcquisitionMode
 
Details() - Constructor for class ome.model.enums.AcquisitionMode.Details
 
Details(Object[]) - Constructor for class ome.model.enums.AcquisitionMode.Details
 
details - Variable in class ome.model.enums.AdminPrivilege
 
DETAILS - Static variable in class ome.model.enums.AdminPrivilege
 
Details() - Constructor for class ome.model.enums.AdminPrivilege.Details
 
Details(Object[]) - Constructor for class ome.model.enums.AdminPrivilege.Details
 
details - Variable in class ome.model.enums.ArcType
 
DETAILS - Static variable in class ome.model.enums.ArcType
 
Details() - Constructor for class ome.model.enums.ArcType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ArcType.Details
 
details - Variable in class ome.model.enums.Binning
 
DETAILS - Static variable in class ome.model.enums.Binning
 
Details() - Constructor for class ome.model.enums.Binning.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Binning.Details
 
details - Variable in class ome.model.enums.ChecksumAlgorithm
 
DETAILS - Static variable in class ome.model.enums.ChecksumAlgorithm
 
Details() - Constructor for class ome.model.enums.ChecksumAlgorithm.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ChecksumAlgorithm.Details
 
details - Variable in class ome.model.enums.ContrastMethod
 
DETAILS - Static variable in class ome.model.enums.ContrastMethod
 
Details() - Constructor for class ome.model.enums.ContrastMethod.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ContrastMethod.Details
 
details - Variable in class ome.model.enums.Correction
 
DETAILS - Static variable in class ome.model.enums.Correction
 
Details() - Constructor for class ome.model.enums.Correction.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Correction.Details
 
details - Variable in class ome.model.enums.DetectorType
 
DETAILS - Static variable in class ome.model.enums.DetectorType
 
Details() - Constructor for class ome.model.enums.DetectorType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.DetectorType.Details
 
details - Variable in class ome.model.enums.DimensionOrder
 
DETAILS - Static variable in class ome.model.enums.DimensionOrder
 
Details() - Constructor for class ome.model.enums.DimensionOrder.Details
 
Details(Object[]) - Constructor for class ome.model.enums.DimensionOrder.Details
 
details - Variable in class ome.model.enums.EventType
 
DETAILS - Static variable in class ome.model.enums.EventType
 
Details() - Constructor for class ome.model.enums.EventType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.EventType.Details
 
details - Variable in class ome.model.enums.ExperimentType
 
DETAILS - Static variable in class ome.model.enums.ExperimentType
 
Details() - Constructor for class ome.model.enums.ExperimentType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ExperimentType.Details
 
details - Variable in class ome.model.enums.Family
 
DETAILS - Static variable in class ome.model.enums.Family
 
Details() - Constructor for class ome.model.enums.Family.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Family.Details
 
details - Variable in class ome.model.enums.FilamentType
 
DETAILS - Static variable in class ome.model.enums.FilamentType
 
Details() - Constructor for class ome.model.enums.FilamentType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.FilamentType.Details
 
details - Variable in class ome.model.enums.FilterType
 
DETAILS - Static variable in class ome.model.enums.FilterType
 
Details() - Constructor for class ome.model.enums.FilterType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.FilterType.Details
 
details - Variable in class ome.model.enums.Format
 
DETAILS - Static variable in class ome.model.enums.Format
 
Details() - Constructor for class ome.model.enums.Format.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Format.Details
 
details - Variable in class ome.model.enums.Illumination
 
DETAILS - Static variable in class ome.model.enums.Illumination
 
Details() - Constructor for class ome.model.enums.Illumination.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Illumination.Details
 
details - Variable in class ome.model.enums.Immersion
 
DETAILS - Static variable in class ome.model.enums.Immersion
 
Details() - Constructor for class ome.model.enums.Immersion.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Immersion.Details
 
details - Variable in class ome.model.enums.LaserMedium
 
DETAILS - Static variable in class ome.model.enums.LaserMedium
 
Details() - Constructor for class ome.model.enums.LaserMedium.Details
 
Details(Object[]) - Constructor for class ome.model.enums.LaserMedium.Details
 
details - Variable in class ome.model.enums.LaserType
 
DETAILS - Static variable in class ome.model.enums.LaserType
 
Details() - Constructor for class ome.model.enums.LaserType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.LaserType.Details
 
details - Variable in class ome.model.enums.Medium
 
DETAILS - Static variable in class ome.model.enums.Medium
 
Details() - Constructor for class ome.model.enums.Medium.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Medium.Details
 
details - Variable in class ome.model.enums.MicrobeamManipulationType
 
DETAILS - Static variable in class ome.model.enums.MicrobeamManipulationType
 
Details() - Constructor for class ome.model.enums.MicrobeamManipulationType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.MicrobeamManipulationType.Details
 
details - Variable in class ome.model.enums.MicroscopeType
 
DETAILS - Static variable in class ome.model.enums.MicroscopeType
 
Details() - Constructor for class ome.model.enums.MicroscopeType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.MicroscopeType.Details
 
details - Variable in class ome.model.enums.PhotometricInterpretation
 
DETAILS - Static variable in class ome.model.enums.PhotometricInterpretation
 
Details() - Constructor for class ome.model.enums.PhotometricInterpretation.Details
 
Details(Object[]) - Constructor for class ome.model.enums.PhotometricInterpretation.Details
 
details - Variable in class ome.model.enums.PixelsType
 
DETAILS - Static variable in class ome.model.enums.PixelsType
 
Details() - Constructor for class ome.model.enums.PixelsType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.PixelsType.Details
 
details - Variable in class ome.model.enums.ProjectionAxis
 
DETAILS - Static variable in class ome.model.enums.ProjectionAxis
 
Details() - Constructor for class ome.model.enums.ProjectionAxis.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ProjectionAxis.Details
 
details - Variable in class ome.model.enums.ProjectionType
 
DETAILS - Static variable in class ome.model.enums.ProjectionType
 
Details() - Constructor for class ome.model.enums.ProjectionType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ProjectionType.Details
 
details - Variable in class ome.model.enums.Pulse
 
DETAILS - Static variable in class ome.model.enums.Pulse
 
Details() - Constructor for class ome.model.enums.Pulse.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Pulse.Details
 
details - Variable in class ome.model.enums.RenderingModel
 
DETAILS - Static variable in class ome.model.enums.RenderingModel
 
Details() - Constructor for class ome.model.enums.RenderingModel.Details
 
Details(Object[]) - Constructor for class ome.model.enums.RenderingModel.Details
 
details - Variable in class ome.model.experiment.Experiment
 
DETAILS - Static variable in class ome.model.experiment.Experiment
 
Details() - Constructor for class ome.model.experiment.Experiment.Details
 
Details(Object[]) - Constructor for class ome.model.experiment.Experiment.Details
 
details - Variable in class ome.model.experiment.MicrobeamManipulation
 
DETAILS - Static variable in class ome.model.experiment.MicrobeamManipulation
 
Details() - Constructor for class ome.model.experiment.MicrobeamManipulation.Details
 
Details(Object[]) - Constructor for class ome.model.experiment.MicrobeamManipulation.Details
 
details - Variable in class ome.model.fs.Fileset
 
DETAILS - Static variable in class ome.model.fs.Fileset
 
Details() - Constructor for class ome.model.fs.Fileset.Details
 
Details(Object[]) - Constructor for class ome.model.fs.Fileset.Details
 
details - Variable in class ome.model.fs.FilesetEntry
 
DETAILS - Static variable in class ome.model.fs.FilesetEntry
 
Details() - Constructor for class ome.model.fs.FilesetEntry.Details
 
Details(Object[]) - Constructor for class ome.model.fs.FilesetEntry.Details
 
details - Variable in class ome.model.fs.FilesetJobLink
 
DETAILS - Static variable in class ome.model.fs.FilesetJobLink
 
Details() - Constructor for class ome.model.fs.FilesetJobLink.Details
 
Details(Object[]) - Constructor for class ome.model.fs.FilesetJobLink.Details
 
Details - Class in ome.model.internal
value type for low-level (row-level) details for all IObject objects.
Details() - Constructor for class ome.model.internal.Details
default constructor.
Details(Object[]) - Constructor for class ome.model.internal.Details
 
Details(Details) - Constructor for class ome.model.internal.Details
copy-constructor
details - Variable in class ome.model.internal.Link
 
DETAILS - Static variable in class ome.model.internal.Link
 
Details() - Constructor for class ome.model.internal.Link.Details
 
Details(Object[]) - Constructor for class ome.model.internal.Link.Details
 
details - Variable in class ome.model.jobs.Job
 
DETAILS - Static variable in class ome.model.jobs.Job
 
Details() - Constructor for class ome.model.jobs.Job.Details
 
Details(Object[]) - Constructor for class ome.model.jobs.Job.Details
 
details - Variable in class ome.model.jobs.JobOriginalFileLink
 
DETAILS - Static variable in class ome.model.jobs.JobOriginalFileLink
 
Details() - Constructor for class ome.model.jobs.JobOriginalFileLink.Details
 
Details(Object[]) - Constructor for class ome.model.jobs.JobOriginalFileLink.Details
 
details - Variable in class ome.model.jobs.JobStatus
 
DETAILS - Static variable in class ome.model.jobs.JobStatus
 
Details() - Constructor for class ome.model.jobs.JobStatus.Details
 
Details(Object[]) - Constructor for class ome.model.jobs.JobStatus.Details
 
details - Variable in class ome.model.meta.DBPatch
 
DETAILS - Static variable in class ome.model.meta.DBPatch
 
Details() - Constructor for class ome.model.meta.DBPatch.Details
 
Details(Object[]) - Constructor for class ome.model.meta.DBPatch.Details
 
details - Variable in class ome.model.meta.Event
 
DETAILS - Static variable in class ome.model.meta.Event
 
Details() - Constructor for class ome.model.meta.Event.Details
 
Details(Object[]) - Constructor for class ome.model.meta.Event.Details
 
details - Variable in class ome.model.meta.EventLog
 
DETAILS - Static variable in class ome.model.meta.EventLog
 
Details() - Constructor for class ome.model.meta.EventLog.Details
 
Details(Object[]) - Constructor for class ome.model.meta.EventLog.Details
 
details - Variable in class ome.model.meta.Experimenter
 
DETAILS - Static variable in class ome.model.meta.Experimenter
 
Details() - Constructor for class ome.model.meta.Experimenter.Details
 
Details(Object[]) - Constructor for class ome.model.meta.Experimenter.Details
 
details - Variable in class ome.model.meta.ExperimenterGroup
 
DETAILS - Static variable in class ome.model.meta.ExperimenterGroup
 
Details() - Constructor for class ome.model.meta.ExperimenterGroup.Details
 
Details(Object[]) - Constructor for class ome.model.meta.ExperimenterGroup.Details
 
details - Variable in class ome.model.meta.ExternalInfo
 
DETAILS - Static variable in class ome.model.meta.ExternalInfo
 
Details() - Constructor for class ome.model.meta.ExternalInfo.Details
 
Details(Object[]) - Constructor for class ome.model.meta.ExternalInfo.Details
 
details - Variable in class ome.model.meta.GroupExperimenterMap
 
DETAILS - Static variable in class ome.model.meta.GroupExperimenterMap
 
Details() - Constructor for class ome.model.meta.GroupExperimenterMap.Details
 
Details(Object[]) - Constructor for class ome.model.meta.GroupExperimenterMap.Details
 
details - Variable in class ome.model.meta.Namespace
 
DETAILS - Static variable in class ome.model.meta.Namespace
 
Details() - Constructor for class ome.model.meta.Namespace.Details
 
Details(Object[]) - Constructor for class ome.model.meta.Namespace.Details
 
details - Variable in class ome.model.meta.Node
 
DETAILS - Static variable in class ome.model.meta.Node
 
Details() - Constructor for class ome.model.meta.Node.Details
 
Details(Object[]) - Constructor for class ome.model.meta.Node.Details
 
details - Variable in class ome.model.meta.Session
 
DETAILS - Static variable in class ome.model.meta.Session
 
Details() - Constructor for class ome.model.meta.Session.Details
 
Details(Object[]) - Constructor for class ome.model.meta.Session.Details
 
details - Variable in class ome.model.meta.ShareMember
 
DETAILS - Static variable in class ome.model.meta.ShareMember
 
Details() - Constructor for class ome.model.meta.ShareMember.Details
 
Details(Object[]) - Constructor for class ome.model.meta.ShareMember.Details
 
details - Variable in class ome.model.roi.AffineTransform
 
DETAILS - Static variable in class ome.model.roi.AffineTransform
 
Details() - Constructor for class ome.model.roi.AffineTransform.Details
 
Details(Object[]) - Constructor for class ome.model.roi.AffineTransform.Details
 
details - Variable in class ome.model.roi.Roi
 
DETAILS - Static variable in class ome.model.roi.Roi
 
Details() - Constructor for class ome.model.roi.Roi.Details
 
Details(Object[]) - Constructor for class ome.model.roi.Roi.Details
 
details - Variable in class ome.model.roi.Shape
 
DETAILS - Static variable in class ome.model.roi.Shape
 
Details() - Constructor for class ome.model.roi.Shape.Details
 
Details(Object[]) - Constructor for class ome.model.roi.Shape.Details
 
details - Variable in class ome.model.screen.Plate
 
DETAILS - Static variable in class ome.model.screen.Plate
 
Details() - Constructor for class ome.model.screen.Plate.Details
 
Details(Object[]) - Constructor for class ome.model.screen.Plate.Details
 
details - Variable in class ome.model.screen.PlateAcquisition
 
DETAILS - Static variable in class ome.model.screen.PlateAcquisition
 
Details() - Constructor for class ome.model.screen.PlateAcquisition.Details
 
Details(Object[]) - Constructor for class ome.model.screen.PlateAcquisition.Details
 
details - Variable in class ome.model.screen.Reagent
 
DETAILS - Static variable in class ome.model.screen.Reagent
 
Details() - Constructor for class ome.model.screen.Reagent.Details
 
Details(Object[]) - Constructor for class ome.model.screen.Reagent.Details
 
details - Variable in class ome.model.screen.Screen
 
DETAILS - Static variable in class ome.model.screen.Screen
 
Details() - Constructor for class ome.model.screen.Screen.Details
 
Details(Object[]) - Constructor for class ome.model.screen.Screen.Details
 
details - Variable in class ome.model.screen.ScreenPlateLink
 
DETAILS - Static variable in class ome.model.screen.ScreenPlateLink
 
Details() - Constructor for class ome.model.screen.ScreenPlateLink.Details
 
Details(Object[]) - Constructor for class ome.model.screen.ScreenPlateLink.Details
 
details - Variable in class ome.model.screen.Well
 
DETAILS - Static variable in class ome.model.screen.Well
 
Details() - Constructor for class ome.model.screen.Well.Details
 
Details(Object[]) - Constructor for class ome.model.screen.Well.Details
 
details - Variable in class ome.model.screen.WellReagentLink
 
DETAILS - Static variable in class ome.model.screen.WellReagentLink
 
Details() - Constructor for class ome.model.screen.WellReagentLink.Details
 
Details(Object[]) - Constructor for class ome.model.screen.WellReagentLink.Details
 
details - Variable in class ome.model.screen.WellSample
 
DETAILS - Static variable in class ome.model.screen.WellSample
 
Details() - Constructor for class ome.model.screen.WellSample.Details
 
Details(Object[]) - Constructor for class ome.model.screen.WellSample.Details
 
details - Variable in class ome.model.stats.StatsInfo
 
DETAILS - Static variable in class ome.model.stats.StatsInfo
 
Details() - Constructor for class ome.model.stats.StatsInfo.Details
 
Details(Object[]) - Constructor for class ome.model.stats.StatsInfo.Details
 
DetailsFieldBridge - Class in ome.util
Delegating FieldBridge which passes the "fieldBridge" bean from the "ome.model" Spring ApplicationContext all arguments.
DetailsFieldBridge() - Constructor for class ome.util.DetailsFieldBridge
 
Detector - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Detector() - Constructor for class ome.model.acquisition.Detector
 
Detector(Long) - Constructor for class ome.model.acquisition.Detector
 
Detector(Long, boolean) - Constructor for class ome.model.acquisition.Detector
Main constructor.
Detector(DetectorType, Instrument) - Constructor for class ome.model.acquisition.Detector
 
detector - Variable in class ome.model.acquisition.DetectorSettings
 
DETECTOR - Static variable in class ome.model.acquisition.DetectorSettings
 
detector - Variable in class ome.model.acquisition.Instrument
 
DETECTOR - Static variable in class ome.model.acquisition.Instrument
 
Detector.Details - Class in ome.model.acquisition
 
DetectorAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
DetectorAnnotationLink() - Constructor for class ome.model.annotations.DetectorAnnotationLink
 
DetectorAnnotationLink(Long) - Constructor for class ome.model.annotations.DetectorAnnotationLink
 
DetectorAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DetectorAnnotationLink
Main constructor.
DetectorAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DetectorAnnotationLink
 
DetectorAnnotationLink.Details - Class in ome.model.annotations
 
DetectorSettings - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
DetectorSettings() - Constructor for class ome.model.acquisition.DetectorSettings
 
DetectorSettings(Long) - Constructor for class ome.model.acquisition.DetectorSettings
 
DetectorSettings(Long, boolean) - Constructor for class ome.model.acquisition.DetectorSettings
Main constructor.
DetectorSettings(Detector) - Constructor for class ome.model.acquisition.DetectorSettings
 
detectorSettings - Variable in class ome.model.core.LogicalChannel
 
DETECTORSETTINGS - Static variable in class ome.model.core.LogicalChannel
 
DetectorSettings.Details - Class in ome.model.acquisition
 
DetectorType - Class in ome.model.enums
 
DetectorType() - Constructor for class ome.model.enums.DetectorType
 
DetectorType(Long) - Constructor for class ome.model.enums.DetectorType
 
DetectorType(Long, boolean) - Constructor for class ome.model.enums.DetectorType
Main constructor.
DetectorType(String) - Constructor for class ome.model.enums.DetectorType
 
DetectorType.Details - Class in ome.model.enums
 
Dichroic - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Dichroic() - Constructor for class ome.model.acquisition.Dichroic
 
Dichroic(Long) - Constructor for class ome.model.acquisition.Dichroic
 
Dichroic(Long, boolean) - Constructor for class ome.model.acquisition.Dichroic
Main constructor.
Dichroic(Instrument) - Constructor for class ome.model.acquisition.Dichroic
 
dichroic - Variable in class ome.model.acquisition.FilterSet
 
DICHROIC - Static variable in class ome.model.acquisition.FilterSet
 
dichroic - Variable in class ome.model.acquisition.Instrument
 
DICHROIC - Static variable in class ome.model.acquisition.Instrument
 
dichroic - Variable in class ome.model.acquisition.LightPath
 
DICHROIC - Static variable in class ome.model.acquisition.LightPath
 
Dichroic.Details - Class in ome.model.acquisition
 
DichroicAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
DichroicAnnotationLink() - Constructor for class ome.model.annotations.DichroicAnnotationLink
 
DichroicAnnotationLink(Long) - Constructor for class ome.model.annotations.DichroicAnnotationLink
 
DichroicAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DichroicAnnotationLink
Main constructor.
DichroicAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DichroicAnnotationLink
 
DichroicAnnotationLink.Details - Class in ome.model.annotations
 
dimensionOrder - Variable in class ome.model.core.Pixels
 
DIMENSIONORDER - Static variable in class ome.model.core.Pixels
 
DimensionOrder - Class in ome.model.enums
 
DimensionOrder() - Constructor for class ome.model.enums.DimensionOrder
 
DimensionOrder(Long) - Constructor for class ome.model.enums.DimensionOrder
 
DimensionOrder(Long, boolean) - Constructor for class ome.model.enums.DimensionOrder
Main constructor.
DimensionOrder(String) - Constructor for class ome.model.enums.DimensionOrder
 
DimensionOrder.Details - Class in ome.model.enums
 
disassemble(Object) - Method in class ome.model.units.GenericEnumType
 
display - Variable in class ome.model.meta.Namespace
 
DISPLAY - Static variable in class ome.model.meta.Namespace
 
displayName - Variable in class ome.model.meta.Namespace
 
DISPLAYNAME - Static variable in class ome.model.meta.Namespace
 
dispose() - Method in class ome.util.PixelData
Attempt to free up any native memory resources associated with the data buffer.
doFilter(String, Object) - Method in class ome.util.ContextFilter
 
doFilter(String, Filterable) - Method in class ome.util.ContextFilter
 
doFilter(String, Collection) - Method in class ome.util.ContextFilter
 
DOUBLE - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
DoubleAnnotation - Class in ome.model.annotations
 
DoubleAnnotation() - Constructor for class ome.model.annotations.DoubleAnnotation
 
DoubleAnnotation(Long) - Constructor for class ome.model.annotations.DoubleAnnotation
 
DoubleAnnotation(Long, boolean) - Constructor for class ome.model.annotations.DoubleAnnotation
Main constructor.
doubleValue - Variable in class ome.model.annotations.DoubleAnnotation
 
DOUBLEVALUE - Static variable in class ome.model.annotations.DoubleAnnotation
 
doUpdateRows(Serializable, PersistentCollection, SessionImplementor) - Method in class ome.util.CountCollectionPersister
 
down - Variable in class ome.model.meta.Node
 
DOWN - Static variable in class ome.model.meta.Node
 
DUMMY - Static variable in class ome.model.internal.Permissions
Marker object which can be set on objects to show that the Permissions instance given contains no value.

E

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Detector
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Dichroic
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.LightSource
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Objective
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.annotations.Annotation
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Project
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.Channel
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.OriginalFile
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.PlaneInfo
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in interface ome.model.IAnnotated
 
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Experimenter
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Namespace
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Node
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Session
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.roi.Roi
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.roi.Shape
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Reagent
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Screen
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Well
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedDataset(CBlock<E>) - Method in class ome.model.containers.Project
takes a CBlock and calls the block once for each ome.model.containers.Dataset while collecting the results.
eachLinkedDataset(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.containers.Dataset while collecting the results.
eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.
eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.
eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedExperimenter(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
takes a CBlock and calls the block once for each ome.model.meta.Experimenter while collecting the results.
eachLinkedExperimenterGroup(CBlock<E>) - Method in class ome.model.meta.Experimenter
takes a CBlock and calls the block once for each ome.model.meta.ExperimenterGroup while collecting the results.
eachLinkedFolder(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.
eachLinkedFolder(CBlock<E>) - Method in class ome.model.roi.Roi
takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.
eachLinkedImage(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.
eachLinkedImage(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.
eachLinkedJob(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.jobs.Job while collecting the results.
eachLinkedOriginalFile(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.core.OriginalFile while collecting the results.
eachLinkedOriginalFile(CBlock<E>) - Method in class ome.model.jobs.Job
takes a CBlock and calls the block once for each ome.model.core.OriginalFile while collecting the results.
eachLinkedPixels(CBlock<E>) - Method in class ome.model.core.OriginalFile
takes a CBlock and calls the block once for each ome.model.core.Pixels while collecting the results.
eachLinkedPlate(CBlock<E>) - Method in class ome.model.screen.Screen
takes a CBlock and calls the block once for each ome.model.screen.Plate while collecting the results.
eachLinkedProject(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.containers.Project while collecting the results.
eachLinkedReagent(CBlock<E>) - Method in class ome.model.screen.Well
takes a CBlock and calls the block once for each ome.model.screen.Reagent while collecting the results.
eachLinkedRoi(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.roi.Roi while collecting the results.
eachLinkedScreen(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.screen.Screen while collecting the results.
eachLinkedWell(CBlock<E>) - Method in class ome.model.screen.Reagent
takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.
EDITRESTRICTION - Static variable in class ome.model.internal.Permissions
 
ElectricPotential - Class in ome.model.units
class storing both a ElectricPotential and a unit for that ElectricPotential (e.g.
ElectricPotential() - Constructor for class ome.model.units.ElectricPotential
Deprecated.
ElectricPotential(double, String) - Constructor for class ome.model.units.ElectricPotential
 
ElectricPotential(double, UnitsElectricPotential) - Constructor for class ome.model.units.ElectricPotential
 
ElectricPotential(double, Unit<ElectricPotential>) - Constructor for class ome.model.units.ElectricPotential
 
ElectricPotential(ElectricPotential) - Constructor for class ome.model.units.ElectricPotential
 
Ellipse - Class in ome.model.roi
 
Ellipse() - Constructor for class ome.model.roi.Ellipse
 
Ellipse(Long) - Constructor for class ome.model.roi.Ellipse
 
Ellipse(Long, boolean) - Constructor for class ome.model.roi.Ellipse
Main constructor.
email - Variable in class ome.model.meta.Experimenter
 
EMAIL - Static variable in class ome.model.meta.Experimenter
 
emissionFilterLink - Variable in class ome.model.acquisition.Filter
 
EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
emissionFilterLink - Variable in class ome.model.acquisition.FilterSet
 
EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
emissionFilterLink - Variable in class ome.model.acquisition.LightPath
 
EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
 
EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.FilterSet
 
EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
 
emissionWave - Variable in class ome.model.core.LogicalChannel
 
EMISSIONWAVE - Static variable in class ome.model.core.LogicalChannel
 
EMPTY - Static variable in class ome.model.internal.Permissions
an immutable Permissions instance with all rights turned off.
EmptyIterator<E> - Class in ome.util
utility iterator which does nothing as quickly as possible.
EmptyIterator() - Constructor for class ome.util.EmptyIterator
 
endPlane - Variable in class ome.model.display.ProjectionDef
 
ENDPLANE - Static variable in class ome.model.display.ProjectionDef
 
endTime - Variable in class ome.model.screen.PlateAcquisition
 
ENDTIME - Static variable in class ome.model.screen.PlateAcquisition
 
endTime - Variable in class ome.parameters.Filter
 
endTime(Timestamp) - Method in class ome.parameters.Parameters
 
enter(Object) - Method in class ome.util.ContextFilter
 
entityId - Variable in class ome.model.meta.EventLog
 
ENTITYID - Static variable in class ome.model.meta.EventLog
 
entityId - Variable in class ome.model.meta.ExternalInfo
 
ENTITYID - Static variable in class ome.model.meta.ExternalInfo
 
entityType - Variable in class ome.model.meta.EventLog
 
ENTITYTYPE - Static variable in class ome.model.meta.EventLog
 
entityType - Variable in class ome.model.meta.ExternalInfo
 
ENTITYTYPE - Static variable in class ome.model.meta.ExternalInfo
 
entry(String, Object) - Method in class ome.util.RdfPrinter
 
equals(Object) - Method in class ome.model.enums.AcquisitionMode
 
equals(Object) - Method in class ome.model.enums.AdminPrivilege
 
equals(Object) - Method in class ome.model.enums.ArcType
 
equals(Object) - Method in class ome.model.enums.Binning
 
equals(Object) - Method in class ome.model.enums.ChecksumAlgorithm
 
equals(Object) - Method in class ome.model.enums.ContrastMethod
 
equals(Object) - Method in class ome.model.enums.Correction
 
equals(Object) - Method in class ome.model.enums.DetectorType
 
equals(Object) - Method in class ome.model.enums.DimensionOrder
 
equals(Object) - Method in class ome.model.enums.EventType
 
equals(Object) - Method in class ome.model.enums.ExperimentType
 
equals(Object) - Method in class ome.model.enums.Family
 
equals(Object) - Method in class ome.model.enums.FilamentType
 
equals(Object) - Method in class ome.model.enums.FilterType
 
equals(Object) - Method in class ome.model.enums.Format
 
equals(Object) - Method in class ome.model.enums.Illumination
 
equals(Object) - Method in class ome.model.enums.Immersion
 
equals(Object) - Method in class ome.model.enums.LaserMedium
 
equals(Object) - Method in class ome.model.enums.LaserType
 
equals(Object) - Method in class ome.model.enums.Medium
 
equals(Object) - Method in class ome.model.enums.MicrobeamManipulationType
 
equals(Object) - Method in class ome.model.enums.MicroscopeType
 
equals(Object) - Method in class ome.model.enums.PhotometricInterpretation
 
equals(Object) - Method in class ome.model.enums.PixelsType
 
equals(Object) - Method in class ome.model.enums.ProjectionAxis
 
equals(Object) - Method in class ome.model.enums.ProjectionType
 
equals(Object) - Method in class ome.model.enums.Pulse
 
equals(Object) - Method in class ome.model.enums.RenderingModel
 
equals(Object) - Method in class ome.model.internal.NamedValue
 
equals(Object) - Method in class ome.model.jobs.JobStatus
 
equals(Object) - Method in class ome.model.units.ElectricPotential
 
equals(Object) - Method in class ome.model.units.Frequency
 
equals(Object, Object) - Method in class ome.model.units.GenericEnumType
 
equals(Object) - Method in class ome.model.units.Length
 
equals(Object) - Method in class ome.model.units.Power
 
equals(Object) - Method in class ome.model.units.Pressure
 
equals(Object) - Method in class ome.model.units.Temperature
 
equals(Object) - Method in class ome.model.units.Time
 
equals(Object) - Method in class ome.parameters.QueryParameter
 
equals(Object) - Method in class ome.util.LSID
 
errorIfUnloaded() - Method in class ome.model.acquisition.Detector
 
errorIfUnloaded() - Method in class ome.model.acquisition.DetectorSettings
 
errorIfUnloaded() - Method in class ome.model.acquisition.Dichroic
 
errorIfUnloaded() - Method in class ome.model.acquisition.Filter
 
errorIfUnloaded() - Method in class ome.model.acquisition.FilterSet
 
errorIfUnloaded() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
errorIfUnloaded() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
errorIfUnloaded() - Method in class ome.model.acquisition.ImagingEnvironment
 
errorIfUnloaded() - Method in class ome.model.acquisition.Instrument
 
errorIfUnloaded() - Method in class ome.model.acquisition.LightPath
 
errorIfUnloaded() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
errorIfUnloaded() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
errorIfUnloaded() - Method in class ome.model.acquisition.LightSettings
 
errorIfUnloaded() - Method in class ome.model.acquisition.LightSource
 
errorIfUnloaded() - Method in class ome.model.acquisition.Microscope
 
errorIfUnloaded() - Method in class ome.model.acquisition.Objective
 
errorIfUnloaded() - Method in class ome.model.acquisition.ObjectiveSettings
 
errorIfUnloaded() - Method in class ome.model.acquisition.OTF
 
errorIfUnloaded() - Method in class ome.model.acquisition.StageLabel
 
errorIfUnloaded() - Method in class ome.model.acquisition.TransmittanceRange
 
errorIfUnloaded() - Method in class ome.model.annotations.Annotation
 
errorIfUnloaded() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ChannelAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.DatasetAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.DetectorAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.DichroicAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.FilesetAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.FilterAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.FolderAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ImageAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.LightPathAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.NodeAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.PlateAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ProjectAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ReagentAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.RoiAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ScreenAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.SessionAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ShapeAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.WellAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.containers.Dataset
 
errorIfUnloaded() - Method in class ome.model.containers.DatasetImageLink
 
errorIfUnloaded() - Method in class ome.model.containers.Folder
 
errorIfUnloaded() - Method in class ome.model.containers.FolderImageLink
 
errorIfUnloaded() - Method in class ome.model.containers.FolderRoiLink
 
errorIfUnloaded() - Method in class ome.model.containers.Project
 
errorIfUnloaded() - Method in class ome.model.containers.ProjectDatasetLink
 
errorIfUnloaded() - Method in class ome.model.core.Channel
 
errorIfUnloaded() - Method in class ome.model.core.Image
 
errorIfUnloaded() - Method in class ome.model.core.LogicalChannel
 
errorIfUnloaded() - Method in class ome.model.core.OriginalFile
 
errorIfUnloaded() - Method in class ome.model.core.Pixels
 
errorIfUnloaded() - Method in class ome.model.core.PixelsOriginalFileMap
 
errorIfUnloaded() - Method in class ome.model.core.PlaneInfo
 
errorIfUnloaded() - Method in class ome.model.display.ChannelBinding
 
errorIfUnloaded() - Method in class ome.model.display.CodomainMapContext
 
errorIfUnloaded() - Method in class ome.model.display.ProjectionDef
 
errorIfUnloaded() - Method in class ome.model.display.QuantumDef
 
errorIfUnloaded() - Method in class ome.model.display.RenderingDef
 
errorIfUnloaded() - Method in class ome.model.display.Thumbnail
 
errorIfUnloaded() - Method in class ome.model.enums.AcquisitionMode
 
errorIfUnloaded() - Method in class ome.model.enums.AdminPrivilege
 
errorIfUnloaded() - Method in class ome.model.enums.ArcType
 
errorIfUnloaded() - Method in class ome.model.enums.Binning
 
errorIfUnloaded() - Method in class ome.model.enums.ChecksumAlgorithm
 
errorIfUnloaded() - Method in class ome.model.enums.ContrastMethod
 
errorIfUnloaded() - Method in class ome.model.enums.Correction
 
errorIfUnloaded() - Method in class ome.model.enums.DetectorType
 
errorIfUnloaded() - Method in class ome.model.enums.DimensionOrder
 
errorIfUnloaded() - Method in class ome.model.enums.EventType
 
errorIfUnloaded() - Method in class ome.model.enums.ExperimentType
 
errorIfUnloaded() - Method in class ome.model.enums.Family
 
errorIfUnloaded() - Method in class ome.model.enums.FilamentType
 
errorIfUnloaded() - Method in class ome.model.enums.FilterType
 
errorIfUnloaded() - Method in class ome.model.enums.Format
 
errorIfUnloaded() - Method in class ome.model.enums.Illumination
 
errorIfUnloaded() - Method in class ome.model.enums.Immersion
 
errorIfUnloaded() - Method in class ome.model.enums.LaserMedium
 
errorIfUnloaded() - Method in class ome.model.enums.LaserType
 
errorIfUnloaded() - Method in class ome.model.enums.Medium
 
errorIfUnloaded() - Method in class ome.model.enums.MicrobeamManipulationType
 
errorIfUnloaded() - Method in class ome.model.enums.MicroscopeType
 
errorIfUnloaded() - Method in class ome.model.enums.PhotometricInterpretation
 
errorIfUnloaded() - Method in class ome.model.enums.PixelsType
 
errorIfUnloaded() - Method in class ome.model.enums.ProjectionAxis
 
errorIfUnloaded() - Method in class ome.model.enums.ProjectionType
 
errorIfUnloaded() - Method in class ome.model.enums.Pulse
 
errorIfUnloaded() - Method in class ome.model.enums.RenderingModel
 
errorIfUnloaded() - Method in class ome.model.experiment.Experiment
 
errorIfUnloaded() - Method in class ome.model.experiment.MicrobeamManipulation
 
errorIfUnloaded() - Method in class ome.model.fs.Fileset
 
errorIfUnloaded() - Method in class ome.model.fs.FilesetEntry
 
errorIfUnloaded() - Method in class ome.model.fs.FilesetJobLink
 
errorIfUnloaded() - Method in class ome.model.internal.Link
 
errorIfUnloaded() - Method in class ome.model.jobs.Job
 
errorIfUnloaded() - Method in class ome.model.jobs.JobOriginalFileLink
 
errorIfUnloaded() - Method in class ome.model.jobs.JobStatus
 
errorIfUnloaded() - Method in class ome.model.meta.DBPatch
 
errorIfUnloaded() - Method in class ome.model.meta.Event
 
errorIfUnloaded() - Method in class ome.model.meta.EventLog
 
errorIfUnloaded() - Method in class ome.model.meta.Experimenter
 
errorIfUnloaded() - Method in class ome.model.meta.ExperimenterGroup
 
errorIfUnloaded() - Method in class ome.model.meta.ExternalInfo
 
errorIfUnloaded() - Method in class ome.model.meta.GroupExperimenterMap
 
errorIfUnloaded() - Method in class ome.model.meta.Namespace
 
errorIfUnloaded() - Method in class ome.model.meta.Node
 
errorIfUnloaded() - Method in class ome.model.meta.Session
 
errorIfUnloaded() - Method in class ome.model.meta.ShareMember
 
errorIfUnloaded() - Method in class ome.model.roi.AffineTransform
 
errorIfUnloaded() - Method in class ome.model.roi.Roi
 
errorIfUnloaded() - Method in class ome.model.roi.Shape
 
errorIfUnloaded() - Method in class ome.model.screen.Plate
 
errorIfUnloaded() - Method in class ome.model.screen.PlateAcquisition
 
errorIfUnloaded() - Method in class ome.model.screen.Reagent
 
errorIfUnloaded() - Method in class ome.model.screen.Screen
 
errorIfUnloaded() - Method in class ome.model.screen.ScreenPlateLink
 
errorIfUnloaded() - Method in class ome.model.screen.Well
 
errorIfUnloaded() - Method in class ome.model.screen.WellReagentLink
 
errorIfUnloaded() - Method in class ome.model.screen.WellSample
 
errorIfUnloaded() - Method in class ome.model.stats.StatsInfo
 
Event - Class in ome.model.meta
 
Event() - Constructor for class ome.model.meta.Event
 
Event(Long) - Constructor for class ome.model.meta.Event
 
Event(Long, boolean) - Constructor for class ome.model.meta.Event
Main constructor.
Event(Timestamp, Experimenter, ExperimenterGroup, EventType, Session) - Constructor for class ome.model.meta.Event
 
event - Variable in class ome.model.meta.EventLog
 
EVENT - Static variable in class ome.model.meta.EventLog
 
Event.Details - Class in ome.model.meta
 
event2timestamp(Event) - Method in class ome.util.ModelMapper
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Arc
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Detector
 
EVENT_FILTER - Static variable in class ome.model.acquisition.DetectorSettings
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Dichroic
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Filament
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Filter
 
EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSet
 
EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
EVENT_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource
 
EVENT_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Laser
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightPath
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightSettings
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightSource
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Microscope
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Objective
 
EVENT_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings
 
EVENT_FILTER - Static variable in class ome.model.acquisition.OTF
 
EVENT_FILTER - Static variable in class ome.model.acquisition.StageLabel
 
EVENT_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange
 
EVENT_FILTER - Static variable in class ome.model.annotations.Annotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.BasicAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.CommentAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.FileAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ListAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.LongAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.MapAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.NumericAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.TagAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.TermAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.TextAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.TypeAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.XmlAnnotation
 
EVENT_FILTER - Static variable in class ome.model.containers.Dataset
 
EVENT_FILTER - Static variable in class ome.model.containers.DatasetImageLink
 
EVENT_FILTER - Static variable in class ome.model.containers.Folder
 
EVENT_FILTER - Static variable in class ome.model.containers.FolderImageLink
 
EVENT_FILTER - Static variable in class ome.model.containers.FolderRoiLink
 
EVENT_FILTER - Static variable in class ome.model.containers.Project
 
EVENT_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink
 
EVENT_FILTER - Static variable in class ome.model.core.Channel
 
EVENT_FILTER - Static variable in class ome.model.core.Image
 
EVENT_FILTER - Static variable in class ome.model.core.LogicalChannel
 
EVENT_FILTER - Static variable in class ome.model.core.OriginalFile
 
EVENT_FILTER - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap
 
EVENT_FILTER - Static variable in class ome.model.core.PlaneInfo
 
EVENT_FILTER - Static variable in class ome.model.display.ChannelBinding
 
EVENT_FILTER - Static variable in class ome.model.display.CodomainMapContext
 
EVENT_FILTER - Static variable in class ome.model.display.ContrastStretchingContext
 
EVENT_FILTER - Static variable in class ome.model.display.PlaneSlicingContext
 
EVENT_FILTER - Static variable in class ome.model.display.ProjectionDef
 
EVENT_FILTER - Static variable in class ome.model.display.QuantumDef
 
EVENT_FILTER - Static variable in class ome.model.display.RenderingDef
 
EVENT_FILTER - Static variable in class ome.model.display.ReverseIntensityContext
 
EVENT_FILTER - Static variable in class ome.model.display.Thumbnail
 
EVENT_FILTER - Static variable in class ome.model.experiment.Experiment
 
EVENT_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation
 
EVENT_FILTER - Static variable in class ome.model.fs.Fileset
 
EVENT_FILTER - Static variable in class ome.model.fs.FilesetEntry
 
EVENT_FILTER - Static variable in class ome.model.fs.FilesetJobLink
 
EVENT_FILTER - Static variable in class ome.model.internal.Link
 
EVENT_FILTER - Static variable in class ome.model.jobs.ImportJob
Deprecated.
 
EVENT_FILTER - Static variable in class ome.model.jobs.IndexingJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.Job
 
EVENT_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink
 
EVENT_FILTER - Static variable in class ome.model.jobs.MetadataImportJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.ParseJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.PixelDataJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.ScriptJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.UploadJob
 
EVENT_FILTER - Static variable in class ome.model.meta.ExternalInfo
 
EVENT_FILTER - Static variable in class ome.model.roi.AffineTransform
 
EVENT_FILTER - Static variable in class ome.model.roi.Ellipse
 
EVENT_FILTER - Static variable in class ome.model.roi.Label
 
EVENT_FILTER - Static variable in class ome.model.roi.Line
 
EVENT_FILTER - Static variable in class ome.model.roi.Mask
 
EVENT_FILTER - Static variable in class ome.model.roi.Path
Deprecated.
 
EVENT_FILTER - Static variable in class ome.model.roi.Point
 
EVENT_FILTER - Static variable in class ome.model.roi.Polygon
 
EVENT_FILTER - Static variable in class ome.model.roi.Polyline
 
EVENT_FILTER - Static variable in class ome.model.roi.Rectangle
 
EVENT_FILTER - Static variable in class ome.model.roi.Roi
 
EVENT_FILTER - Static variable in class ome.model.roi.Shape
 
EVENT_FILTER - Static variable in class ome.model.screen.Plate
 
EVENT_FILTER - Static variable in class ome.model.screen.PlateAcquisition
 
EVENT_FILTER - Static variable in class ome.model.screen.Reagent
 
EVENT_FILTER - Static variable in class ome.model.screen.Screen
 
EVENT_FILTER - Static variable in class ome.model.screen.ScreenPlateLink
 
EVENT_FILTER - Static variable in class ome.model.screen.Well
 
EVENT_FILTER - Static variable in class ome.model.screen.WellReagentLink
 
EVENT_FILTER - Static variable in class ome.model.screen.WellSample
 
EVENT_FILTER - Static variable in class ome.model.stats.StatsInfo
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
 
EVENT_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel
 
EVENT_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder
 
EVENT_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project
 
EVENT_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image
 
EVENT_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
EVENT_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
 
EVENT_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image
 
EVENT_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi
 
EVENT_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset
 
EVENT_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder
 
EVENT_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset
 
EVENT_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset
 
EVENT_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
 
EVENT_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
 
EVENT_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
 
EVENT_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_PIXELS - Static variable in class ome.model.core.Image
 
EVENT_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
 
EVENT_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
 
EVENT_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen
 
EVENT_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef
 
EVENT_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset
 
EVENT_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well
 
EVENT_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen
 
EVENT_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder
 
EVENT_FILTER_ROIS - Static variable in class ome.model.core.Image
 
EVENT_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate
 
EVENT_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER_SHAPES - Static variable in class ome.model.roi.Roi
 
EVENT_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
 
EVENT_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset
 
EVENT_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef
 
EVENT_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent
 
EVENT_FILTER_WELLS - Static variable in class ome.model.screen.Plate
 
EVENT_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
 
EVENT_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image
 
EVENT_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well
 
eventId - Variable in class ome.util.SqlAction.DeleteLog
 
EventLog - Class in ome.model.meta
 
EventLog() - Constructor for class ome.model.meta.EventLog
 
EventLog(Long) - Constructor for class ome.model.meta.EventLog
 
EventLog(Long, boolean) - Constructor for class ome.model.meta.EventLog
Main constructor.
EventLog(Long, String, String, Event) - Constructor for class ome.model.meta.EventLog
 
EventLog.Details - Class in ome.model.meta
 
events - Variable in class ome.model.meta.Session
 
EVENTS - Static variable in class ome.model.meta.Session
 
EventType - Class in ome.model.enums
 
EventType() - Constructor for class ome.model.enums.EventType
 
EventType(Long) - Constructor for class ome.model.enums.EventType
 
EventType(Long, boolean) - Constructor for class ome.model.enums.EventType
Main constructor.
EventType(String) - Constructor for class ome.model.enums.EventType
 
EventType.Details - Class in ome.model.enums
 
excitationFilterLink - Variable in class ome.model.acquisition.Filter
 
EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
excitationFilterLink - Variable in class ome.model.acquisition.FilterSet
 
EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
excitationFilterLink - Variable in class ome.model.acquisition.LightPath
 
EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
 
EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.FilterSet
 
EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
 
excitationWave - Variable in class ome.model.core.LogicalChannel
 
EXCITATIONWAVE - Static variable in class ome.model.core.LogicalChannel
 
exit(Object) - Method in class ome.util.ContextFilter
 
exp(long) - Method in class ome.parameters.Parameters
 
experiment - Variable in class ome.model.core.Image
 
EXPERIMENT - Static variable in class ome.model.core.Image
 
Experiment - Class in ome.model.experiment
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Experiment() - Constructor for class ome.model.experiment.Experiment
 
Experiment(Long) - Constructor for class ome.model.experiment.Experiment
 
Experiment(Long, boolean) - Constructor for class ome.model.experiment.Experiment
Main constructor.
Experiment(ExperimentType) - Constructor for class ome.model.experiment.Experiment
 
experiment - Variable in class ome.model.experiment.MicrobeamManipulation
 
EXPERIMENT - Static variable in class ome.model.experiment.MicrobeamManipulation
 
Experiment.Details - Class in ome.model.experiment
 
experimenter - Variable in class ome.model.meta.Event
 
EXPERIMENTER - Static variable in class ome.model.meta.Event
 
Experimenter - Class in ome.model.meta
 
Experimenter() - Constructor for class ome.model.meta.Experimenter
 
Experimenter(Long) - Constructor for class ome.model.meta.Experimenter
 
Experimenter(Long, boolean) - Constructor for class ome.model.meta.Experimenter
Main constructor.
Experimenter(String, String, String, Boolean) - Constructor for class ome.model.meta.Experimenter
 
Experimenter.Details - Class in ome.model.meta
 
ExperimenterAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ExperimenterAnnotationLink() - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
 
ExperimenterAnnotationLink(Long) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
 
ExperimenterAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
Main constructor.
ExperimenterAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
 
ExperimenterAnnotationLink.Details - Class in ome.model.annotations
 
experimenterGroup - Variable in class ome.model.meta.Event
 
EXPERIMENTERGROUP - Static variable in class ome.model.meta.Event
 
ExperimenterGroup - Class in ome.model.meta
 
ExperimenterGroup() - Constructor for class ome.model.meta.ExperimenterGroup
 
ExperimenterGroup(Long) - Constructor for class ome.model.meta.ExperimenterGroup
 
ExperimenterGroup(Long, boolean) - Constructor for class ome.model.meta.ExperimenterGroup
Main constructor.
ExperimenterGroup(String, Boolean) - Constructor for class ome.model.meta.ExperimenterGroup
 
ExperimenterGroup.Details - Class in ome.model.meta
 
ExperimenterGroupAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ExperimenterGroupAnnotationLink() - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
 
ExperimenterGroupAnnotationLink(Long) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
 
ExperimenterGroupAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
Main constructor.
ExperimenterGroupAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
 
ExperimenterGroupAnnotationLink.Details - Class in ome.model.annotations
 
ExperimentType - Class in ome.model.enums
 
ExperimentType() - Constructor for class ome.model.enums.ExperimentType
 
ExperimentType(Long) - Constructor for class ome.model.enums.ExperimentType
 
ExperimentType(Long, boolean) - Constructor for class ome.model.enums.ExperimentType
Main constructor.
ExperimentType(String) - Constructor for class ome.model.enums.ExperimentType
 
ExperimentType.Details - Class in ome.model.enums
 
ExpiredCredentialException - Exception in ome.conditions
Correct username and credentials provided, but credentials expired.
ExpiredCredentialException(String) - Constructor for exception ome.conditions.ExpiredCredentialException
 
exposureTime - Variable in class ome.model.core.PlaneInfo
 
EXPOSURETIME - Static variable in class ome.model.core.PlaneInfo
 
externalDescription - Variable in class ome.model.screen.Well
 
EXTERNALDESCRIPTION - Static variable in class ome.model.screen.Well
 
externalIdentifier - Variable in class ome.model.screen.Plate
 
EXTERNALIDENTIFIER - Static variable in class ome.model.screen.Plate
 
externalIdentifier - Variable in class ome.model.screen.Well
 
EXTERNALIDENTIFIER - Static variable in class ome.model.screen.Well
 
EXTERNALINFO - Static variable in class ome.model.internal.Details
 
ExternalInfo - Class in ome.model.meta
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ExternalInfo() - Constructor for class ome.model.meta.ExternalInfo
 
ExternalInfo(Long) - Constructor for class ome.model.meta.ExternalInfo
 
ExternalInfo(Long, boolean) - Constructor for class ome.model.meta.ExternalInfo
Main constructor.
ExternalInfo(Long, String) - Constructor for class ome.model.meta.ExternalInfo
 
ExternalInfo.Details - Class in ome.model.meta
 

F

family - Variable in class ome.model.display.ChannelBinding
 
FAMILY - Static variable in class ome.model.display.ChannelBinding
 
Family - Class in ome.model.enums
 
Family() - Constructor for class ome.model.enums.Family
 
Family(Long) - Constructor for class ome.model.enums.Family
 
Family(Long, boolean) - Constructor for class ome.model.enums.Family
Main constructor.
Family(String) - Constructor for class ome.model.enums.Family
 
Family.Details - Class in ome.model.enums
 
FIELDS - Static variable in class ome.model.acquisition.Arc
 
fields() - Method in class ome.model.acquisition.Arc
 
FIELDS - Static variable in class ome.model.acquisition.Detector
 
fields() - Method in class ome.model.acquisition.Detector
 
FIELDS - Static variable in class ome.model.acquisition.DetectorSettings
 
fields() - Method in class ome.model.acquisition.DetectorSettings
 
FIELDS - Static variable in class ome.model.acquisition.Dichroic
 
fields() - Method in class ome.model.acquisition.Dichroic
 
FIELDS - Static variable in class ome.model.acquisition.Filament
 
fields() - Method in class ome.model.acquisition.Filament
 
FIELDS - Static variable in class ome.model.acquisition.Filter
 
fields() - Method in class ome.model.acquisition.Filter
 
FIELDS - Static variable in class ome.model.acquisition.FilterSet
 
fields() - Method in class ome.model.acquisition.FilterSet
 
FIELDS - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
fields() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
FIELDS - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
fields() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
FIELDS - Static variable in class ome.model.acquisition.GenericExcitationSource
 
fields() - Method in class ome.model.acquisition.GenericExcitationSource
 
FIELDS - Static variable in class ome.model.acquisition.ImagingEnvironment
 
fields() - Method in class ome.model.acquisition.ImagingEnvironment
 
FIELDS - Static variable in class ome.model.acquisition.Instrument
 
fields() - Method in class ome.model.acquisition.Instrument
 
FIELDS - Static variable in class ome.model.acquisition.Laser
 
fields() - Method in class ome.model.acquisition.Laser
 
FIELDS - Static variable in class ome.model.acquisition.LightEmittingDiode
 
fields() - Method in class ome.model.acquisition.LightEmittingDiode
 
FIELDS - Static variable in class ome.model.acquisition.LightPath
 
fields() - Method in class ome.model.acquisition.LightPath
 
FIELDS - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
fields() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
FIELDS - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
fields() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
FIELDS - Static variable in class ome.model.acquisition.LightSettings
 
fields() - Method in class ome.model.acquisition.LightSettings
 
FIELDS - Static variable in class ome.model.acquisition.LightSource
 
fields() - Method in class ome.model.acquisition.LightSource
 
FIELDS - Static variable in class ome.model.acquisition.Microscope
 
fields() - Method in class ome.model.acquisition.Microscope
 
FIELDS - Static variable in class ome.model.acquisition.Objective
 
fields() - Method in class ome.model.acquisition.Objective
 
FIELDS - Static variable in class ome.model.acquisition.ObjectiveSettings
 
fields() - Method in class ome.model.acquisition.ObjectiveSettings
 
FIELDS - Static variable in class ome.model.acquisition.OTF
 
fields() - Method in class ome.model.acquisition.OTF
 
FIELDS - Static variable in class ome.model.acquisition.StageLabel
 
fields() - Method in class ome.model.acquisition.StageLabel
 
FIELDS - Static variable in class ome.model.acquisition.TransmittanceRange
 
fields() - Method in class ome.model.acquisition.TransmittanceRange
 
FIELDS - Static variable in class ome.model.annotations.Annotation
 
fields() - Method in class ome.model.annotations.Annotation
 
FIELDS - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
fields() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.BasicAnnotation
 
fields() - Method in class ome.model.annotations.BasicAnnotation
 
FIELDS - Static variable in class ome.model.annotations.BooleanAnnotation
 
fields() - Method in class ome.model.annotations.BooleanAnnotation
 
FIELDS - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
fields() - Method in class ome.model.annotations.ChannelAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.CommentAnnotation
 
fields() - Method in class ome.model.annotations.CommentAnnotation
 
FIELDS - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
fields() - Method in class ome.model.annotations.DatasetAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
fields() - Method in class ome.model.annotations.DetectorAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
fields() - Method in class ome.model.annotations.DichroicAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.DoubleAnnotation
 
fields() - Method in class ome.model.annotations.DoubleAnnotation
 
FIELDS - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
fields() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
fields() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.FileAnnotation
 
fields() - Method in class ome.model.annotations.FileAnnotation
 
FIELDS - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
fields() - Method in class ome.model.annotations.FilesetAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.FilterAnnotationLink
 
fields() - Method in class ome.model.annotations.FilterAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.FolderAnnotationLink
 
fields() - Method in class ome.model.annotations.FolderAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ImageAnnotationLink
 
fields() - Method in class ome.model.annotations.ImageAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
fields() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
fields() - Method in class ome.model.annotations.LightPathAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
fields() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ListAnnotation
 
fields() - Method in class ome.model.annotations.ListAnnotation
 
FIELDS - Static variable in class ome.model.annotations.LongAnnotation
 
fields() - Method in class ome.model.annotations.LongAnnotation
 
FIELDS - Static variable in class ome.model.annotations.MapAnnotation
 
fields() - Method in class ome.model.annotations.MapAnnotation
 
FIELDS - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
fields() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.NodeAnnotationLink
 
fields() - Method in class ome.model.annotations.NodeAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.NumericAnnotation
 
fields() - Method in class ome.model.annotations.NumericAnnotation
 
FIELDS - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
fields() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
fields() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
fields() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
fields() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.PlateAnnotationLink
 
fields() - Method in class ome.model.annotations.PlateAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
fields() - Method in class ome.model.annotations.ProjectAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
fields() - Method in class ome.model.annotations.ReagentAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.RoiAnnotationLink
 
fields() - Method in class ome.model.annotations.RoiAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
fields() - Method in class ome.model.annotations.ScreenAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.SessionAnnotationLink
 
fields() - Method in class ome.model.annotations.SessionAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
fields() - Method in class ome.model.annotations.ShapeAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.TagAnnotation
 
fields() - Method in class ome.model.annotations.TagAnnotation
 
FIELDS - Static variable in class ome.model.annotations.TermAnnotation
 
fields() - Method in class ome.model.annotations.TermAnnotation
 
FIELDS - Static variable in class ome.model.annotations.TextAnnotation
 
fields() - Method in class ome.model.annotations.TextAnnotation
 
FIELDS - Static variable in class ome.model.annotations.TimestampAnnotation
 
fields() - Method in class ome.model.annotations.TimestampAnnotation
 
FIELDS - Static variable in class ome.model.annotations.TypeAnnotation
 
fields() - Method in class ome.model.annotations.TypeAnnotation
 
FIELDS - Static variable in class ome.model.annotations.WellAnnotationLink
 
fields() - Method in class ome.model.annotations.WellAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.XmlAnnotation
 
fields() - Method in class ome.model.annotations.XmlAnnotation
 
FIELDS - Static variable in class ome.model.containers.Dataset
 
fields() - Method in class ome.model.containers.Dataset
 
FIELDS - Static variable in class ome.model.containers.DatasetImageLink
 
fields() - Method in class ome.model.containers.DatasetImageLink
 
FIELDS - Static variable in class ome.model.containers.Folder
 
fields() - Method in class ome.model.containers.Folder
 
FIELDS - Static variable in class ome.model.containers.FolderImageLink
 
fields() - Method in class ome.model.containers.FolderImageLink
 
FIELDS - Static variable in class ome.model.containers.FolderRoiLink
 
fields() - Method in class ome.model.containers.FolderRoiLink
 
FIELDS - Static variable in class ome.model.containers.Project
 
fields() - Method in class ome.model.containers.Project
 
FIELDS - Static variable in class ome.model.containers.ProjectDatasetLink
 
fields() - Method in class ome.model.containers.ProjectDatasetLink
 
FIELDS - Static variable in class ome.model.core.Channel
 
fields() - Method in class ome.model.core.Channel
 
FIELDS - Static variable in class ome.model.core.Image
 
fields() - Method in class ome.model.core.Image
 
FIELDS - Static variable in class ome.model.core.LogicalChannel
 
fields() - Method in class ome.model.core.LogicalChannel
 
FIELDS - Static variable in class ome.model.core.OriginalFile
 
fields() - Method in class ome.model.core.OriginalFile
 
FIELDS - Static variable in class ome.model.core.Pixels
 
fields() - Method in class ome.model.core.Pixels
 
FIELDS - Static variable in class ome.model.core.PixelsOriginalFileMap
 
fields() - Method in class ome.model.core.PixelsOriginalFileMap
 
FIELDS - Static variable in class ome.model.core.PlaneInfo
 
fields() - Method in class ome.model.core.PlaneInfo
 
FIELDS - Static variable in class ome.model.display.ChannelBinding
 
fields() - Method in class ome.model.display.ChannelBinding
 
FIELDS - Static variable in class ome.model.display.CodomainMapContext
 
fields() - Method in class ome.model.display.CodomainMapContext
 
FIELDS - Static variable in class ome.model.display.ContrastStretchingContext
 
fields() - Method in class ome.model.display.ContrastStretchingContext
 
FIELDS - Static variable in class ome.model.display.PlaneSlicingContext
 
fields() - Method in class ome.model.display.PlaneSlicingContext
 
FIELDS - Static variable in class ome.model.display.ProjectionDef
 
fields() - Method in class ome.model.display.ProjectionDef
 
FIELDS - Static variable in class ome.model.display.QuantumDef
 
fields() - Method in class ome.model.display.QuantumDef
 
FIELDS - Static variable in class ome.model.display.RenderingDef
 
fields() - Method in class ome.model.display.RenderingDef
 
FIELDS - Static variable in class ome.model.display.ReverseIntensityContext
 
fields() - Method in class ome.model.display.ReverseIntensityContext
 
FIELDS - Static variable in class ome.model.display.Thumbnail
 
fields() - Method in class ome.model.display.Thumbnail
 
FIELDS - Static variable in class ome.model.enums.AcquisitionMode
 
fields() - Method in class ome.model.enums.AcquisitionMode
 
FIELDS - Static variable in class ome.model.enums.AdminPrivilege
 
fields() - Method in class ome.model.enums.AdminPrivilege
 
FIELDS - Static variable in class ome.model.enums.ArcType
 
fields() - Method in class ome.model.enums.ArcType
 
FIELDS - Static variable in class ome.model.enums.Binning
 
fields() - Method in class ome.model.enums.Binning
 
FIELDS - Static variable in class ome.model.enums.ChecksumAlgorithm
 
fields() - Method in class ome.model.enums.ChecksumAlgorithm
 
FIELDS - Static variable in class ome.model.enums.ContrastMethod
 
fields() - Method in class ome.model.enums.ContrastMethod
 
FIELDS - Static variable in class ome.model.enums.Correction
 
fields() - Method in class ome.model.enums.Correction
 
FIELDS - Static variable in class ome.model.enums.DetectorType
 
fields() - Method in class ome.model.enums.DetectorType
 
FIELDS - Static variable in class ome.model.enums.DimensionOrder
 
fields() - Method in class ome.model.enums.DimensionOrder
 
FIELDS - Static variable in class ome.model.enums.EventType
 
fields() - Method in class ome.model.enums.EventType
 
FIELDS - Static variable in class ome.model.enums.ExperimentType
 
fields() - Method in class ome.model.enums.ExperimentType
 
FIELDS - Static variable in class ome.model.enums.Family
 
fields() - Method in class ome.model.enums.Family
 
FIELDS - Static variable in class ome.model.enums.FilamentType
 
fields() - Method in class ome.model.enums.FilamentType
 
FIELDS - Static variable in class ome.model.enums.FilterType
 
fields() - Method in class ome.model.enums.FilterType
 
FIELDS - Static variable in class ome.model.enums.Format
 
fields() - Method in class ome.model.enums.Format
 
FIELDS - Static variable in class ome.model.enums.Illumination
 
fields() - Method in class ome.model.enums.Illumination
 
FIELDS - Static variable in class ome.model.enums.Immersion
 
fields() - Method in class ome.model.enums.Immersion
 
FIELDS - Static variable in class ome.model.enums.LaserMedium
 
fields() - Method in class ome.model.enums.LaserMedium
 
FIELDS - Static variable in class ome.model.enums.LaserType
 
fields() - Method in class ome.model.enums.LaserType
 
FIELDS - Static variable in class ome.model.enums.Medium
 
fields() - Method in class ome.model.enums.Medium
 
FIELDS - Static variable in class ome.model.enums.MicrobeamManipulationType
 
fields() - Method in class ome.model.enums.MicrobeamManipulationType
 
FIELDS - Static variable in class ome.model.enums.MicroscopeType
 
fields() - Method in class ome.model.enums.MicroscopeType
 
FIELDS - Static variable in class ome.model.enums.PhotometricInterpretation
 
fields() - Method in class ome.model.enums.PhotometricInterpretation
 
FIELDS - Static variable in class ome.model.enums.PixelsType
 
fields() - Method in class ome.model.enums.PixelsType
 
FIELDS - Static variable in class ome.model.enums.ProjectionAxis
 
fields() - Method in class ome.model.enums.ProjectionAxis
 
FIELDS - Static variable in class ome.model.enums.ProjectionType
 
fields() - Method in class ome.model.enums.ProjectionType
 
FIELDS - Static variable in class ome.model.enums.Pulse
 
fields() - Method in class ome.model.enums.Pulse
 
FIELDS - Static variable in class ome.model.enums.RenderingModel
 
fields() - Method in class ome.model.enums.RenderingModel
 
FIELDS - Static variable in class ome.model.experiment.Experiment
 
fields() - Method in class ome.model.experiment.Experiment
 
FIELDS - Static variable in class ome.model.experiment.MicrobeamManipulation
 
fields() - Method in class ome.model.experiment.MicrobeamManipulation
 
FIELDS - Static variable in class ome.model.fs.Fileset
 
fields() - Method in class ome.model.fs.Fileset
 
FIELDS - Static variable in class ome.model.fs.FilesetEntry
 
fields() - Method in class ome.model.fs.FilesetEntry
 
FIELDS - Static variable in class ome.model.fs.FilesetJobLink
 
fields() - Method in class ome.model.fs.FilesetJobLink
 
FIELDS - Static variable in class ome.model.internal.Link
 
fields() - Method in class ome.model.internal.Link
 
fields() - Method in interface ome.model.IObject
returns a Set of field names that belong to this class
FIELDS - Static variable in class ome.model.jobs.ImportJob
Deprecated.
 
fields() - Method in class ome.model.jobs.ImportJob
Deprecated.
 
FIELDS - Static variable in class ome.model.jobs.IndexingJob
 
fields() - Method in class ome.model.jobs.IndexingJob
 
FIELDS - Static variable in class ome.model.jobs.IntegrityCheckJob
 
fields() - Method in class ome.model.jobs.IntegrityCheckJob
 
FIELDS - Static variable in class ome.model.jobs.Job
 
fields() - Method in class ome.model.jobs.Job
 
FIELDS - Static variable in class ome.model.jobs.JobOriginalFileLink
 
fields() - Method in class ome.model.jobs.JobOriginalFileLink
 
FIELDS - Static variable in class ome.model.jobs.JobStatus
 
fields() - Method in class ome.model.jobs.JobStatus
 
FIELDS - Static variable in class ome.model.jobs.MetadataImportJob
 
fields() - Method in class ome.model.jobs.MetadataImportJob
 
FIELDS - Static variable in class ome.model.jobs.ParseJob
 
fields() - Method in class ome.model.jobs.ParseJob
 
FIELDS - Static variable in class ome.model.jobs.PixelDataJob
 
fields() - Method in class ome.model.jobs.PixelDataJob
 
FIELDS - Static variable in class ome.model.jobs.ScriptJob
 
fields() - Method in class ome.model.jobs.ScriptJob
 
FIELDS - Static variable in class ome.model.jobs.ThumbnailGenerationJob
 
fields() - Method in class ome.model.jobs.ThumbnailGenerationJob
 
FIELDS - Static variable in class ome.model.jobs.UploadJob
 
fields() - Method in class ome.model.jobs.UploadJob
 
FIELDS - Static variable in class ome.model.meta.DBPatch
 
fields() - Method in class ome.model.meta.DBPatch
 
FIELDS - Static variable in class ome.model.meta.Event
 
fields() - Method in class ome.model.meta.Event
 
FIELDS - Static variable in class ome.model.meta.EventLog
 
fields() - Method in class ome.model.meta.EventLog
 
FIELDS - Static variable in class ome.model.meta.Experimenter
 
fields() - Method in class ome.model.meta.Experimenter
 
FIELDS - Static variable in class ome.model.meta.ExperimenterGroup
 
fields() - Method in class ome.model.meta.ExperimenterGroup
 
FIELDS - Static variable in class ome.model.meta.ExternalInfo
 
fields() - Method in class ome.model.meta.ExternalInfo
 
FIELDS - Static variable in class ome.model.meta.GroupExperimenterMap
 
fields() - Method in class ome.model.meta.GroupExperimenterMap
 
FIELDS - Static variable in class ome.model.meta.Namespace
 
fields() - Method in class ome.model.meta.Namespace
 
FIELDS - Static variable in class ome.model.meta.Node
 
fields() - Method in class ome.model.meta.Node
 
FIELDS - Static variable in class ome.model.meta.Session
 
fields() - Method in class ome.model.meta.Session
 
FIELDS - Static variable in class ome.model.meta.Share
 
fields() - Method in class ome.model.meta.Share
 
FIELDS - Static variable in class ome.model.meta.ShareMember
 
fields() - Method in class ome.model.meta.ShareMember
 
FIELDS - Static variable in class ome.model.roi.AffineTransform
 
fields() - Method in class ome.model.roi.AffineTransform
 
FIELDS - Static variable in class ome.model.roi.Ellipse
 
fields() - Method in class ome.model.roi.Ellipse
 
FIELDS - Static variable in class ome.model.roi.Label
 
fields() - Method in class ome.model.roi.Label
 
FIELDS - Static variable in class ome.model.roi.Line
 
fields() - Method in class ome.model.roi.Line
 
FIELDS - Static variable in class ome.model.roi.Mask
 
fields() - Method in class ome.model.roi.Mask
 
FIELDS - Static variable in class ome.model.roi.Path
Deprecated.
 
fields() - Method in class ome.model.roi.Path
Deprecated.
 
FIELDS - Static variable in class ome.model.roi.Point
 
fields() - Method in class ome.model.roi.Point
 
FIELDS - Static variable in class ome.model.roi.Polygon
 
fields() - Method in class ome.model.roi.Polygon
 
FIELDS - Static variable in class ome.model.roi.Polyline
 
fields() - Method in class ome.model.roi.Polyline
 
FIELDS - Static variable in class ome.model.roi.Rectangle
 
fields() - Method in class ome.model.roi.Rectangle
 
FIELDS - Static variable in class ome.model.roi.Roi
 
fields() - Method in class ome.model.roi.Roi
 
FIELDS - Static variable in class ome.model.roi.Shape
 
fields() - Method in class ome.model.roi.Shape
 
FIELDS - Static variable in class ome.model.screen.Plate
 
fields() - Method in class ome.model.screen.Plate
 
FIELDS - Static variable in class ome.model.screen.PlateAcquisition
 
fields() - Method in class ome.model.screen.PlateAcquisition
 
FIELDS - Static variable in class ome.model.screen.Reagent
 
fields() - Method in class ome.model.screen.Reagent
 
FIELDS - Static variable in class ome.model.screen.Screen
 
fields() - Method in class ome.model.screen.Screen
 
FIELDS - Static variable in class ome.model.screen.ScreenPlateLink
 
fields() - Method in class ome.model.screen.ScreenPlateLink
 
FIELDS - Static variable in class ome.model.screen.Well
 
fields() - Method in class ome.model.screen.Well
 
FIELDS - Static variable in class ome.model.screen.WellReagentLink
 
fields() - Method in class ome.model.screen.WellReagentLink
 
FIELDS - Static variable in class ome.model.screen.WellSample
 
fields() - Method in class ome.model.screen.WellSample
 
FIELDS - Static variable in class ome.model.stats.StatsInfo
 
fields() - Method in class ome.model.stats.StatsInfo
 
fields() - Method in class ome.util.PermDetails
 
Filament - Class in ome.model.acquisition
 
Filament() - Constructor for class ome.model.acquisition.Filament
 
Filament(Long) - Constructor for class ome.model.acquisition.Filament
 
Filament(Long, boolean) - Constructor for class ome.model.acquisition.Filament
Main constructor.
Filament(FilamentType) - Constructor for class ome.model.acquisition.Filament
 
FilamentType - Class in ome.model.enums
 
FilamentType() - Constructor for class ome.model.enums.FilamentType
 
FilamentType(Long) - Constructor for class ome.model.enums.FilamentType
 
FilamentType(Long, boolean) - Constructor for class ome.model.enums.FilamentType
Main constructor.
FilamentType(String) - Constructor for class ome.model.enums.FilamentType
 
FilamentType.Details - Class in ome.model.enums
 
file - Variable in class ome.model.annotations.FileAnnotation
 
FILE - Static variable in class ome.model.annotations.FileAnnotation
 
FileAnnotation - Class in ome.model.annotations
 
FileAnnotation() - Constructor for class ome.model.annotations.FileAnnotation
 
FileAnnotation(Long) - Constructor for class ome.model.annotations.FileAnnotation
 
FileAnnotation(Long, boolean) - Constructor for class ome.model.annotations.FileAnnotation
Main constructor.
fileId - Variable in class ome.util.SqlAction.DeleteLog
 
fileIdsInDb(String, Set<String>) - Method in interface ome.util.SqlAction
Return all IDs matching the given mimetypes, or all IDs if mimetypes is null.
fileIdsInDb(String, Set<String>) - Method in class ome.util.SqlAction.Impl
 
fileRepo(long) - Method in interface ome.util.SqlAction
 
fileRepo(long) - Method in class ome.util.SqlAction.Impl
 
fileset - Variable in class ome.model.core.Image
 
FILESET - Static variable in class ome.model.core.Image
 
Fileset - Class in ome.model.fs
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Fileset() - Constructor for class ome.model.fs.Fileset
 
Fileset(Long) - Constructor for class ome.model.fs.Fileset
 
Fileset(Long, boolean) - Constructor for class ome.model.fs.Fileset
Main constructor.
Fileset(String) - Constructor for class ome.model.fs.Fileset
 
fileset - Variable in class ome.model.fs.FilesetEntry
 
FILESET - Static variable in class ome.model.fs.FilesetEntry
 
Fileset.Details - Class in ome.model.fs
 
FilesetAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilesetAnnotationLink() - Constructor for class ome.model.annotations.FilesetAnnotationLink
 
FilesetAnnotationLink(Long) - Constructor for class ome.model.annotations.FilesetAnnotationLink
 
FilesetAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FilesetAnnotationLink
Main constructor.
FilesetAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FilesetAnnotationLink
 
FilesetAnnotationLink.Details - Class in ome.model.annotations
 
filesetEntries - Variable in class ome.model.core.OriginalFile
 
FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
 
FilesetEntry - Class in ome.model.fs
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilesetEntry() - Constructor for class ome.model.fs.FilesetEntry
 
FilesetEntry(Long) - Constructor for class ome.model.fs.FilesetEntry
 
FilesetEntry(Long, boolean) - Constructor for class ome.model.fs.FilesetEntry
Main constructor.
FilesetEntry(Fileset, OriginalFile, String) - Constructor for class ome.model.fs.FilesetEntry
 
FilesetEntry.Details - Class in ome.model.fs
 
FilesetJobLink - Class in ome.model.fs
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilesetJobLink() - Constructor for class ome.model.fs.FilesetJobLink
 
FilesetJobLink(Long) - Constructor for class ome.model.fs.FilesetJobLink
 
FilesetJobLink(Long, boolean) - Constructor for class ome.model.fs.FilesetJobLink
Main constructor.
FilesetJobLink(IObject, IObject) - Constructor for class ome.model.fs.FilesetJobLink
 
FilesetJobLink.Details - Class in ome.model.fs
 
fillColor - Variable in class ome.model.roi.Shape
 
FILLCOLOR - Static variable in class ome.model.roi.Shape
 
fillObject(ReverseModelMapper) - Method in interface ome.model.ModelBased
 
fillRule - Variable in class ome.model.roi.Shape
 
FILLRULE - Static variable in class ome.model.roi.Shape
 
Filter - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Filter() - Constructor for class ome.model.acquisition.Filter
 
Filter(Long) - Constructor for class ome.model.acquisition.Filter
 
Filter(Long, boolean) - Constructor for class ome.model.acquisition.Filter
Main constructor.
Filter(Instrument) - Constructor for class ome.model.acquisition.Filter
 
filter - Variable in class ome.model.acquisition.Instrument
 
FILTER - Static variable in class ome.model.acquisition.Instrument
 
Filter - Class in ome.parameters
parameter to generally reduce the size of a query result set.
Filter() - Constructor for class ome.parameters.Filter
 
filter(String, Filterable) - Method in class ome.util.ContextFilter
 
filter(String, Collection) - Method in class ome.util.ContextFilter
iterates over the contents of the collection and filters each.
filter(String, Map) - Method in class ome.util.ContextFilter
filters both the key and value sets of the map.
filter(String, Object) - Method in class ome.util.ContextFilter
used when type is unknown.
filter(String, ContextFilter.Entry) - Method in class ome.util.ContextFilter
doesn't return a new entry.
Filter - Interface in ome.util
marks objects which can be filtered using {see FIXME }.
filter(String, Filterable) - Method in interface ome.util.Filter
 
filter(String, Collection) - Method in interface ome.util.Filter
 
filter(String, Map) - Method in interface ome.util.Filter
 
filter(String, Object) - Method in interface ome.util.Filter
 
filter(String, Filterable) - Method in class ome.util.ModelMapper
 
filter(String, Collection) - Method in class ome.util.ModelMapper
 
filter(String, Map) - Method in class ome.util.ModelMapper
 
filter(String, Object) - Method in class ome.util.RdfPrinter
 
filter(String, Filterable) - Method in class ome.util.RdfPrinter
 
filter(String, Collection) - Method in class ome.util.RdfPrinter
 
Filter.Details - Class in ome.model.acquisition
 
Filterable - Interface in ome.util
marks objects which can be filtered using {see FIXME }.
FilterAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterAnnotationLink() - Constructor for class ome.model.annotations.FilterAnnotationLink
 
FilterAnnotationLink(Long) - Constructor for class ome.model.annotations.FilterAnnotationLink
 
FilterAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FilterAnnotationLink
Main constructor.
FilterAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FilterAnnotationLink
 
FilterAnnotationLink.Details - Class in ome.model.annotations
 
FilteredFullAdmin() - Constructor for class ome.util.PrivilegedStringType.FilteredFullAdmin
 
FilteredFullAdmin() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdmin
 
FilteredFullAdminHidden() - Constructor for class ome.util.PrivilegedStringType.FilteredFullAdminHidden
 
FilteredFullAdminHidden() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdminHidden
 
FilteredFullAdminUUID() - Constructor for class ome.util.PrivilegedStringType.FilteredFullAdminUUID
 
FilteredFullAdminUUID() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdminUUID
 
FilteredRelatedUser() - Constructor for class ome.util.PrivilegedStringType.FilteredRelatedUser
 
FilteredRelatedUser() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredRelatedUser
 
FilteredRelatedUserHidden() - Constructor for class ome.util.PrivilegedStringType.FilteredRelatedUserHidden
 
FilteredRelatedUserHidden() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredRelatedUserHidden
 
filteredSet() - Method in class ome.model.internal.Details
copy of the current collection of filtered names.
filteredSize() - Method in class ome.model.internal.Details
the count of collections which were filtered.
filterFileIdsByRepo(String, List<Long>) - Method in interface ome.util.SqlAction
Find the original file IDs among those given that are in the given repository.
filterFileIdsByRepo(String, List<Long>) - Method in class ome.util.SqlAction.Impl
 
FilterSet - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterSet() - Constructor for class ome.model.acquisition.FilterSet
 
FilterSet(Long) - Constructor for class ome.model.acquisition.FilterSet
 
FilterSet(Long, boolean) - Constructor for class ome.model.acquisition.FilterSet
Main constructor.
FilterSet(Instrument) - Constructor for class ome.model.acquisition.FilterSet
 
filterSet - Variable in class ome.model.acquisition.Instrument
 
FILTERSET - Static variable in class ome.model.acquisition.Instrument
 
filterSet - Variable in class ome.model.acquisition.OTF
 
FILTERSET - Static variable in class ome.model.acquisition.OTF
 
filterSet - Variable in class ome.model.core.LogicalChannel
 
FILTERSET - Static variable in class ome.model.core.LogicalChannel
 
FilterSet.Details - Class in ome.model.acquisition
 
FilterSetEmissionFilterLink - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterSetEmissionFilterLink() - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
 
FilterSetEmissionFilterLink(Long) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
 
FilterSetEmissionFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
Main constructor.
FilterSetEmissionFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
 
FilterSetEmissionFilterLink.Details - Class in ome.model.acquisition
 
FilterSetExcitationFilterLink - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterSetExcitationFilterLink() - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
 
FilterSetExcitationFilterLink(Long) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
 
FilterSetExcitationFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
Main constructor.
FilterSetExcitationFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
 
FilterSetExcitationFilterLink.Details - Class in ome.model.acquisition
 
FilterType - Class in ome.model.enums
 
FilterType() - Constructor for class ome.model.enums.FilterType
 
FilterType(Long) - Constructor for class ome.model.enums.FilterType
 
FilterType(Long, boolean) - Constructor for class ome.model.enums.FilterType
Main constructor.
FilterType(String) - Constructor for class ome.model.enums.FilterType
 
FilterType.Details - Class in ome.model.enums
 
filterWheel - Variable in class ome.model.acquisition.Filter
 
FILTERWHEEL - Static variable in class ome.model.acquisition.Filter
 
findAnnotationAnnotationLink(Annotation) - Method in class ome.model.annotations.Annotation
find all ome.model.annotations.AnnotationAnnotationLink which have the argument as their child.
findChannelAnnotationLink(Annotation) - Method in class ome.model.core.Channel
find all ome.model.annotations.ChannelAnnotationLink which have the argument as their child.
findClass(Class) - Method in class ome.util.ModelMapper
 
findCollection(Collection) - Method in class ome.util.ModelMapper
 
findCollectionTarget(Object) - Method in class ome.util.ModelMapper
extension point which subclasses can override to better map the values of collections and maps.
findDatasetAnnotationLink(Annotation) - Method in class ome.model.containers.Dataset
find all ome.model.annotations.DatasetAnnotationLink which have the argument as their child.
findDatasetImageLink(Image) - Method in class ome.model.containers.Dataset
find all ome.model.containers.DatasetImageLink which have the argument as their child.
findDatasetImageLink(Dataset) - Method in class ome.model.core.Image
find all ome.model.containers.DatasetImageLink which have the argument as their parent.
findDetectorAnnotationLink(Annotation) - Method in class ome.model.acquisition.Detector
find all ome.model.annotations.DetectorAnnotationLink which have the argument as their child.
findDichroicAnnotationLink(Annotation) - Method in class ome.model.acquisition.Dichroic
find all ome.model.annotations.DichroicAnnotationLink which have the argument as their child.
findExperimenterAnnotationLink(Annotation) - Method in class ome.model.meta.Experimenter
find all ome.model.annotations.ExperimenterAnnotationLink which have the argument as their child.
findExperimenterGroupAnnotationLink(Annotation) - Method in class ome.model.meta.ExperimenterGroup
find all ome.model.annotations.ExperimenterGroupAnnotationLink which have the argument as their child.
findFilesetAnnotationLink(Annotation) - Method in class ome.model.fs.Fileset
find all ome.model.annotations.FilesetAnnotationLink which have the argument as their child.
findFilesetJobLink(Job) - Method in class ome.model.fs.Fileset
find all ome.model.fs.FilesetJobLink which have the argument as their child.
findFilterAnnotationLink(Annotation) - Method in class ome.model.acquisition.Filter
find all ome.model.annotations.FilterAnnotationLink which have the argument as their child.
findFilterSetEmissionFilterLink(FilterSet) - Method in class ome.model.acquisition.Filter
find all ome.model.acquisition.FilterSetEmissionFilterLink which have the argument as their parent.
findFilterSetEmissionFilterLink(Filter) - Method in class ome.model.acquisition.FilterSet
find all ome.model.acquisition.FilterSetEmissionFilterLink which have the argument as their child.
findFilterSetExcitationFilterLink(FilterSet) - Method in class ome.model.acquisition.Filter
find all ome.model.acquisition.FilterSetExcitationFilterLink which have the argument as their parent.
findFilterSetExcitationFilterLink(Filter) - Method in class ome.model.acquisition.FilterSet
find all ome.model.acquisition.FilterSetExcitationFilterLink which have the argument as their child.
findFolderAnnotationLink(Annotation) - Method in class ome.model.containers.Folder
find all ome.model.annotations.FolderAnnotationLink which have the argument as their child.
findFolderImageLink(Image) - Method in class ome.model.containers.Folder
find all ome.model.containers.FolderImageLink which have the argument as their child.
findFolderImageLink(Folder) - Method in class ome.model.core.Image
find all ome.model.containers.FolderImageLink which have the argument as their parent.
findFolderRoiLink(Roi) - Method in class ome.model.containers.Folder
find all ome.model.containers.FolderRoiLink which have the argument as their child.
findFolderRoiLink(Folder) - Method in class ome.model.roi.Roi
find all ome.model.containers.FolderRoiLink which have the argument as their parent.
findGroupExperimenterMap(ExperimenterGroup) - Method in class ome.model.meta.Experimenter
find all ome.model.meta.GroupExperimenterMap which have the argument as their parent.
findGroupExperimenterMap(Experimenter) - Method in class ome.model.meta.ExperimenterGroup
find all ome.model.meta.GroupExperimenterMap which have the argument as their child.
findImageAnnotationLink(Annotation) - Method in class ome.model.core.Image
find all ome.model.annotations.ImageAnnotationLink which have the argument as their child.
findInstrumentAnnotationLink(Annotation) - Method in class ome.model.acquisition.Instrument
find all ome.model.annotations.InstrumentAnnotationLink which have the argument as their child.
findJobOriginalFileLink(OriginalFile) - Method in class ome.model.jobs.Job
find all ome.model.jobs.JobOriginalFileLink which have the argument as their child.
findKeyTarget(Object) - Method in class ome.util.ModelMapper
extension point which subclasses can override to better map the keys of maps.
findLightPathAnnotationLink(Annotation) - Method in class ome.model.acquisition.LightPath
find all ome.model.annotations.LightPathAnnotationLink which have the argument as their child.
findLightPathEmissionFilterLink(Filter) - Method in class ome.model.acquisition.LightPath
find all ome.model.acquisition.LightPathEmissionFilterLink which have the argument as their child.
findLightPathExcitationFilterLink(Filter) - Method in class ome.model.acquisition.LightPath
find all ome.model.acquisition.LightPathExcitationFilterLink which have the argument as their child.
findLightSourceAnnotationLink(Annotation) - Method in class ome.model.acquisition.LightSource
find all ome.model.annotations.LightSourceAnnotationLink which have the argument as their child.
findMap(Map) - Method in class ome.util.ModelMapper
 
findNamespaceAnnotationLink(Annotation) - Method in class ome.model.meta.Namespace
find all ome.model.annotations.NamespaceAnnotationLink which have the argument as their child.
findNodeAnnotationLink(Annotation) - Method in class ome.model.meta.Node
find all ome.model.annotations.NodeAnnotationLink which have the argument as their child.
findObjectiveAnnotationLink(Annotation) - Method in class ome.model.acquisition.Objective
find all ome.model.annotations.ObjectiveAnnotationLink which have the argument as their child.
findOldAdminPrivileges() - Method in interface ome.util.SqlAction
Find the completed transactions among the current light administrator privileges.
findOldAdminPrivileges() - Method in class ome.util.SqlAction.Impl
 
findOriginalFileAnnotationLink(Annotation) - Method in class ome.model.core.OriginalFile
find all ome.model.annotations.OriginalFileAnnotationLink which have the argument as their child.
findPixelsOriginalFileMap(Pixels) - Method in class ome.model.core.OriginalFile
find all ome.model.core.PixelsOriginalFileMap which have the argument as their child.
findPixelsOriginalFileMap(OriginalFile) - Method in class ome.model.core.Pixels
find all ome.model.core.PixelsOriginalFileMap which have the argument as their parent.
findPlaneInfoAnnotationLink(Annotation) - Method in class ome.model.core.PlaneInfo
find all ome.model.annotations.PlaneInfoAnnotationLink which have the argument as their child.
findPlateAcquisitionAnnotationLink(Annotation) - Method in class ome.model.screen.PlateAcquisition
find all ome.model.annotations.PlateAcquisitionAnnotationLink which have the argument as their child.
findPlateAnnotationLink(Annotation) - Method in class ome.model.screen.Plate
find all ome.model.annotations.PlateAnnotationLink which have the argument as their child.
findProjectAnnotationLink(Annotation) - Method in class ome.model.containers.Project
find all ome.model.annotations.ProjectAnnotationLink which have the argument as their child.
findProjectDatasetLink(Project) - Method in class ome.model.containers.Dataset
find all ome.model.containers.ProjectDatasetLink which have the argument as their parent.
findProjectDatasetLink(Dataset) - Method in class ome.model.containers.Project
find all ome.model.containers.ProjectDatasetLink which have the argument as their child.
findReagentAnnotationLink(Annotation) - Method in class ome.model.screen.Reagent
find all ome.model.annotations.ReagentAnnotationLink which have the argument as their child.
findRepoDeleteLogs(SqlAction.DeleteLog) - Method in interface ome.util.SqlAction
Find all SqlAction.DeleteLog entries which match all of the non-null fields provided in the template.
findRepoDeleteLogs(SqlAction.DeleteLog) - Method in class ome.util.SqlAction.Impl
 
findRepoFile(String, String, String) - Method in interface ome.util.SqlAction
findRepoFile(String, String, String, String) - Method in interface ome.util.SqlAction
findRepoFile(String, String, String, Set<String>) - Method in interface ome.util.SqlAction
Lookup the id of an OriginalFile in a given repository or return null if none is found.
findRepoFile(String, String, String) - Method in class ome.util.SqlAction.Impl
 
findRepoFile(String, String, String, String) - Method in class ome.util.SqlAction.Impl
 
findRepoFile(String, String, String, Set<String>) - Method in class ome.util.SqlAction.Impl
 
findRepoFilePath(String, long) - Method in interface ome.util.SqlAction
 
findRepoFilePath(String, long) - Method in class ome.util.SqlAction.Impl
 
findRepoFiles(String, String, List<String>, Set<String>) - Method in interface ome.util.SqlAction
Like SqlAction.findRepoFile(String, String, String, Set), but queries in bulk and returns a map for the found IDs.
findRepoFiles(String, String) - Method in interface ome.util.SqlAction
Return a list of original file ids that all have a path value matching the passed dirname in the given repository.
findRepoFiles(String, String, List<String>, Set<String>) - Method in class ome.util.SqlAction.Impl
 
findRepoFiles(String, String) - Method in class ome.util.SqlAction.Impl
 
findRepoImageFromPixels(long) - Method in class ome.util.actions.PostgresSqlAction
 
findRepoImageFromPixels(long) - Method in interface ome.util.SqlAction
 
findRepoPixels(String, String, String) - Method in class ome.util.actions.PostgresSqlAction
 
findRepoPixels(String, String, String) - Method in interface ome.util.SqlAction
 
findRepoRootPath(String) - Method in interface ome.util.SqlAction
Find the path of the repository root.
findRepoRootPath(String) - Method in class ome.util.SqlAction.Impl
 
findRoiAnnotationLink(Annotation) - Method in class ome.model.roi.Roi
find all ome.model.annotations.RoiAnnotationLink which have the argument as their child.
findScreenAnnotationLink(Annotation) - Method in class ome.model.screen.Screen
find all ome.model.annotations.ScreenAnnotationLink which have the argument as their child.
findScreenPlateLink(Screen) - Method in class ome.model.screen.Plate
find all ome.model.screen.ScreenPlateLink which have the argument as their parent.
findScreenPlateLink(Plate) - Method in class ome.model.screen.Screen
find all ome.model.screen.ScreenPlateLink which have the argument as their child.
findSessionAnnotationLink(Annotation) - Method in class ome.model.meta.Session
find all ome.model.annotations.SessionAnnotationLink which have the argument as their child.
findShapeAnnotationLink(Annotation) - Method in class ome.model.roi.Shape
find all ome.model.annotations.ShapeAnnotationLink which have the argument as their child.
findTarget(Object) - Method in class ome.util.ModelMapper
known immutables are return unchanged.
findWellAnnotationLink(Annotation) - Method in class ome.model.screen.Well
find all ome.model.annotations.WellAnnotationLink which have the argument as their child.
findWellReagentLink(Well) - Method in class ome.model.screen.Reagent
find all ome.model.screen.WellReagentLink which have the argument as their parent.
findWellReagentLink(Reagent) - Method in class ome.model.screen.Well
find all ome.model.screen.WellReagentLink which have the argument as their child.
finished - Variable in class ome.model.jobs.Job
 
FINISHED - Static variable in class ome.model.jobs.Job
 
finished - Variable in class ome.model.meta.DBPatch
 
FINISHED - Static variable in class ome.model.meta.DBPatch
 
firstName - Variable in class ome.model.meta.Experimenter
 
FIRSTNAME - Static variable in class ome.model.meta.Experimenter
 
FLOAT - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
fluor - Variable in class ome.model.core.LogicalChannel
 
FLUOR - Static variable in class ome.model.core.LogicalChannel
 
Folder - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Folder() - Constructor for class ome.model.containers.Folder
 
Folder(Long) - Constructor for class ome.model.containers.Folder
 
Folder(Long, boolean) - Constructor for class ome.model.containers.Folder
Main constructor.
Folder(String) - Constructor for class ome.model.containers.Folder
 
Folder.Details - Class in ome.model.containers
 
FolderAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FolderAnnotationLink() - Constructor for class ome.model.annotations.FolderAnnotationLink
 
FolderAnnotationLink(Long) - Constructor for class ome.model.annotations.FolderAnnotationLink
 
FolderAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FolderAnnotationLink
Main constructor.
FolderAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FolderAnnotationLink
 
FolderAnnotationLink.Details - Class in ome.model.annotations
 
FolderImageLink - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FolderImageLink() - Constructor for class ome.model.containers.FolderImageLink
 
FolderImageLink(Long) - Constructor for class ome.model.containers.FolderImageLink
 
FolderImageLink(Long, boolean) - Constructor for class ome.model.containers.FolderImageLink
Main constructor.
FolderImageLink(IObject, IObject) - Constructor for class ome.model.containers.FolderImageLink
 
FolderImageLink.Details - Class in ome.model.containers
 
folderLinks - Variable in class ome.model.core.Image
 
FOLDERLINKS - Static variable in class ome.model.core.Image
 
folderLinks - Variable in class ome.model.roi.Roi
 
FOLDERLINKS - Static variable in class ome.model.roi.Roi
 
FOLDERLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
 
FOLDERLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Roi
 
FolderRoiLink - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FolderRoiLink() - Constructor for class ome.model.containers.FolderRoiLink
 
FolderRoiLink(Long) - Constructor for class ome.model.containers.FolderRoiLink
 
FolderRoiLink(Long, boolean) - Constructor for class ome.model.containers.FolderRoiLink
Main constructor.
FolderRoiLink(IObject, IObject) - Constructor for class ome.model.containers.FolderRoiLink
 
FolderRoiLink.Details - Class in ome.model.containers
 
fontFamily - Variable in class ome.model.roi.Shape
 
FONTFAMILY - Static variable in class ome.model.roi.Shape
 
fontSize - Variable in class ome.model.roi.Shape
 
FONTSIZE - Static variable in class ome.model.roi.Shape
 
fontStyle - Variable in class ome.model.roi.Shape
 
FONTSTYLE - Static variable in class ome.model.roi.Shape
 
format - Variable in class ome.model.core.Image
 
FORMAT - Static variable in class ome.model.core.Image
 
Format - Class in ome.model.enums
 
Format() - Constructor for class ome.model.enums.Format
 
Format(Long) - Constructor for class ome.model.enums.Format
 
Format(Long, boolean) - Constructor for class ome.model.enums.Format
Main constructor.
Format(String) - Constructor for class ome.model.enums.Format
 
Format.Details - Class in ome.model.enums
 
Frequency - Class in ome.model.units
class storing both a Frequency and a unit for that Frequency (e.g.
Frequency() - Constructor for class ome.model.units.Frequency
Deprecated.
Frequency(double, String) - Constructor for class ome.model.units.Frequency
 
Frequency(double, UnitsFrequency) - Constructor for class ome.model.units.Frequency
 
Frequency(double, Unit<Frequency>) - Constructor for class ome.model.units.Frequency
 
Frequency(Frequency) - Constructor for class ome.model.units.Frequency
 
frequencyMultiplication - Variable in class ome.model.acquisition.Laser
 
FREQUENCYMULTIPLICATION - Static variable in class ome.model.acquisition.Laser
 
fromdbvalue(String) - Method in enum ome.model.units.UNITS
Perform the reverse lookup from todbvalue(Object) converting the DB's enums which contain invalid characters to the upper-cased CODE-based enums used elsewhere.

G

gain - Variable in class ome.model.acquisition.Detector
 
GAIN - Static variable in class ome.model.acquisition.Detector
 
gain - Variable in class ome.model.acquisition.DetectorSettings
 
GAIN - Static variable in class ome.model.acquisition.DetectorSettings
 
generate(SessionImplementor, Object) - Method in class ome.util.TableIdGenerator
 
GenericEnumType<E extends java.lang.Enum<E>> - Class in ome.model.units
http://octagen.at/2014/10/postgresql-custom-data-types-enum-in-hibernate/
GenericEnumType() - Constructor for class ome.model.units.GenericEnumType
 
GenericExcitationSource - Class in ome.model.acquisition
 
GenericExcitationSource() - Constructor for class ome.model.acquisition.GenericExcitationSource
 
GenericExcitationSource(Long) - Constructor for class ome.model.acquisition.GenericExcitationSource
 
GenericExcitationSource(Long, boolean) - Constructor for class ome.model.acquisition.GenericExcitationSource
Main constructor.
get(String) - Method in class ome.parameters.Parameters
lookup a QueryParameter by name.
getA00() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a00 (java.lang.Double)
getA01() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a01 (java.lang.Double)
getA02() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a02 (java.lang.Double)
getA10() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a10 (java.lang.Double)
getA11() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a11 (java.lang.Double)
getA12() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a12 (java.lang.Double)
getAcquisitionDate() - Method in class ome.model.core.Image
Simple field ome.model.core.Image.acquisitionDate (java.sql.Timestamp)
getAction() - Method in class ome.model.meta.EventLog
Simple field ome.model.meta.EventLog.action (java.lang.String)
getActive() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.active (java.lang.Boolean)
getActive() - Method in class ome.model.display.ProjectionDef
Simple field ome.model.display.ProjectionDef.active (java.lang.Boolean)
getActive() - Method in class ome.model.meta.Share
Simple field ome.model.meta.Share.active (java.lang.Boolean)
getAirPressure() - Method in class ome.model.acquisition.ImagingEnvironment
Enum-mapped unit-based field ome.model.acquisition.ImagingEnvironment.airPressure (ome.model.units.Pressure)
getAlpha() - Method in class ome.model.core.Channel
Simple field ome.model.core.Channel.alpha (java.lang.Integer)
getAlpha() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.alpha (java.lang.Integer)
getAlpha() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.alpha (java.lang.Integer)
getAmplificationGain() - Method in class ome.model.acquisition.Detector
Simple field ome.model.acquisition.Detector.amplificationGain (java.lang.Double)
getAnnotationLinks() - Method in class ome.model.acquisition.Detector
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Dichroic
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Filter
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Instrument
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.LightPath
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.LightSource
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Objective
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.annotations.Annotation
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.containers.Dataset
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.containers.Folder
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.containers.Project
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.Channel
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.Image
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.OriginalFile
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.PlaneInfo
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.fs.Fileset
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Experimenter
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Namespace
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Node
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Session
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.roi.Roi
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.roi.Shape
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Plate
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Reagent
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Screen
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Well
returns annotationLinks .
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Detector
If fetched, returns the count(*) of ome.model.annotations.DetectorAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Dichroic
If fetched, returns the count(*) of ome.model.annotations.DichroicAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Filter
If fetched, returns the count(*) of ome.model.annotations.FilterAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Instrument
If fetched, returns the count(*) of ome.model.annotations.InstrumentAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.LightPath
If fetched, returns the count(*) of ome.model.annotations.LightPathAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.LightSource
If fetched, returns the count(*) of ome.model.annotations.LightSourceAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Objective
If fetched, returns the count(*) of ome.model.annotations.ObjectiveAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.annotations.Annotation
If fetched, returns the count(*) of ome.model.annotations.AnnotationAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Dataset
If fetched, returns the count(*) of ome.model.annotations.DatasetAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Folder
If fetched, returns the count(*) of ome.model.annotations.FolderAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Project
If fetched, returns the count(*) of ome.model.annotations.ProjectAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.Channel
If fetched, returns the count(*) of ome.model.annotations.ChannelAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.Image
If fetched, returns the count(*) of ome.model.annotations.ImageAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.OriginalFile
If fetched, returns the count(*) of ome.model.annotations.OriginalFileAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.PlaneInfo
If fetched, returns the count(*) of ome.model.annotations.PlaneInfoAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.fs.Fileset
If fetched, returns the count(*) of ome.model.annotations.FilesetAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Experimenter
If fetched, returns the count(*) of ome.model.annotations.ExperimenterAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.ExperimenterGroup
If fetched, returns the count(*) of ome.model.annotations.ExperimenterGroupAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Namespace
If fetched, returns the count(*) of ome.model.annotations.NamespaceAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Node
If fetched, returns the count(*) of ome.model.annotations.NodeAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Session
If fetched, returns the count(*) of ome.model.annotations.SessionAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.roi.Roi
If fetched, returns the count(*) of ome.model.annotations.RoiAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.roi.Shape
If fetched, returns the count(*) of ome.model.annotations.ShapeAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Plate
If fetched, returns the count(*) of ome.model.annotations.PlateAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.PlateAcquisition
If fetched, returns the count(*) of ome.model.annotations.PlateAcquisitionAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Reagent
If fetched, returns the count(*) of ome.model.annotations.ReagentAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Screen
If fetched, returns the count(*) of ome.model.annotations.ScreenAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Well
If fetched, returns the count(*) of ome.model.annotations.WellAnnotationLink that a user has.
getArchived() - Method in class ome.model.core.Image
Simple field ome.model.core.Image.archived (java.lang.Boolean)
getAtime() - Method in class ome.model.core.OriginalFile
Simple field ome.model.core.OriginalFile.atime (java.sql.Timestamp)
getAttenuation() - Method in class ome.model.acquisition.LightSettings
Simple field ome.model.acquisition.LightSettings.attenuation (java.lang.Double)
getAxis() - Method in class ome.model.display.ProjectionDef
Many-to-one field ome.model.display.ProjectionDef.axis (ome.model.enums.ProjectionAxis)
getBinning() - Method in class ome.model.acquisition.DetectorSettings
Many-to-one field ome.model.acquisition.DetectorSettings.binning (ome.model.enums.Binning)
getBitDepth(String) - Static method in class ome.util.PixelData
Retrieves the bit width of a particular PixelsType.
getBitResolution() - Method in class ome.model.display.QuantumDef
Simple field ome.model.display.QuantumDef.bitResolution (java.lang.Integer)
getBitSize() - Method in class ome.model.enums.PixelsType
Simple field ome.model.enums.PixelsType.bitSize (java.lang.Integer)
getBlue() - Method in class ome.model.core.Channel
Simple field ome.model.core.Channel.blue (java.lang.Integer)
getBlue() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.blue (java.lang.Integer)
getBlue() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.blue (java.lang.Integer)
getBoolValue() - Method in class ome.model.annotations.BooleanAnnotation
Simple field ome.model.annotations.BooleanAnnotation.boolValue (java.lang.Boolean)
getBytes() - Method in class ome.model.roi.Mask
Simple field ome.model.roi.Mask.bytes (byte[])
getCalibratedMagnification() - Method in class ome.model.acquisition.Objective
Simple field ome.model.acquisition.Objective.calibratedMagnification (java.lang.Double)
getCdEnd() - Method in class ome.model.display.QuantumDef
Simple field ome.model.display.QuantumDef.cdEnd (java.lang.Integer)
getCdStart() - Method in class ome.model.display.QuantumDef
Simple field ome.model.display.QuantumDef.cdStart (java.lang.Integer)
getChannel(int) - Method in class ome.model.core.Pixels
Gets the ome.model.core.Channel at the given index.
getChannelBinding() - Method in class ome.model.display.CodomainMapContext
Many-to-one field ome.model.display.CodomainMapContext.channelBinding (ome.model.display.ChannelBinding)
getChannelBinding(int) - Method in class ome.model.display.RenderingDef
Gets the ome.model.display.ChannelBinding at the given index.
getChannels() - Method in class ome.model.core.LogicalChannel
returns channels .
getChannels() - Method in class ome.model.core.Pixels
returns channels .
getChild() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
Many-to-one field ome.model.acquisition.FilterSetEmissionFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
Many-to-one field ome.model.acquisition.FilterSetExcitationFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
Many-to-one field ome.model.acquisition.LightPathEmissionFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
Many-to-one field ome.model.acquisition.LightPathExcitationFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.annotations.AnnotationAnnotationLink
Many-to-one field ome.model.annotations.AnnotationAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ChannelAnnotationLink
Many-to-one field ome.model.annotations.ChannelAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.DatasetAnnotationLink
Many-to-one field ome.model.annotations.DatasetAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.DetectorAnnotationLink
Many-to-one field ome.model.annotations.DetectorAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.DichroicAnnotationLink
Many-to-one field ome.model.annotations.DichroicAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ExperimenterAnnotationLink
Many-to-one field ome.model.annotations.ExperimenterAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
Many-to-one field ome.model.annotations.ExperimenterGroupAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.FilesetAnnotationLink
Many-to-one field ome.model.annotations.FilesetAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.FilterAnnotationLink
Many-to-one field ome.model.annotations.FilterAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.FolderAnnotationLink
Many-to-one field ome.model.annotations.FolderAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ImageAnnotationLink
Many-to-one field ome.model.annotations.ImageAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.InstrumentAnnotationLink
Many-to-one field ome.model.annotations.InstrumentAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.LightPathAnnotationLink
Many-to-one field ome.model.annotations.LightPathAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.LightSourceAnnotationLink
Many-to-one field ome.model.annotations.LightSourceAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.NamespaceAnnotationLink
Many-to-one field ome.model.annotations.NamespaceAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.NodeAnnotationLink
Many-to-one field ome.model.annotations.NodeAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ObjectiveAnnotationLink
Many-to-one field ome.model.annotations.ObjectiveAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.OriginalFileAnnotationLink
Many-to-one field ome.model.annotations.OriginalFileAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
Many-to-one field ome.model.annotations.PlaneInfoAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
Many-to-one field ome.model.annotations.PlateAcquisitionAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.PlateAnnotationLink
Many-to-one field ome.model.annotations.PlateAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ProjectAnnotationLink
Many-to-one field ome.model.annotations.ProjectAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ReagentAnnotationLink
Many-to-one field ome.model.annotations.ReagentAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.RoiAnnotationLink
Many-to-one field ome.model.annotations.RoiAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ScreenAnnotationLink
Many-to-one field ome.model.annotations.ScreenAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.SessionAnnotationLink
Many-to-one field ome.model.annotations.SessionAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ShapeAnnotationLink
Many-to-one field ome.model.annotations.ShapeAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.WellAnnotationLink
Many-to-one field ome.model.annotations.WellAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.containers.DatasetImageLink
Many-to-one field ome.model.containers.DatasetImageLink.child (ome.model.core.Image)
getChild() - Method in class ome.model.containers.FolderImageLink
Many-to-one field ome.model.containers.FolderImageLink.child (ome.model.core.Image)
getChild() - Method in class ome.model.containers.FolderRoiLink
Many-to-one field ome.model.containers.FolderRoiLink.child (ome.model.roi.Roi)
getChild() - Method in class ome.model.containers.ProjectDatasetLink
Many-to-one field ome.model.containers.ProjectDatasetLink.child (ome.model.containers.Dataset)
getChild() - Method in class ome.model.core.PixelsOriginalFileMap
Many-to-one field ome.model.core.PixelsOriginalFileMap.child (ome.model.core.Pixels)
getChild() - Method in class ome.model.fs.FilesetJobLink
Many-to-one field ome.model.fs.FilesetJobLink.child (ome.model.jobs.Job)
getChild() - Method in interface ome.model.ILink
 
getChild() - Method in class ome.model.jobs.JobOriginalFileLink
Many-to-one field ome.model.jobs.JobOriginalFileLink.child (ome.model.core.OriginalFile)
getChild() - Method in class ome.model.meta.GroupExperimenterMap
Many-to-one field ome.model.meta.GroupExperimenterMap.child (ome.model.meta.Experimenter)
getChild() - Method in class ome.model.meta.ShareMember
Many-to-one field ome.model.meta.ShareMember.child (ome.model.meta.Experimenter)
getChild() - Method in class ome.model.screen.ScreenPlateLink
Many-to-one field ome.model.screen.ScreenPlateLink.child (ome.model.screen.Plate)
getChild() - Method in class ome.model.screen.WellReagentLink
Many-to-one field ome.model.screen.WellReagentLink.child (ome.model.screen.Reagent)
getChildFolders() - Method in class ome.model.containers.Folder
returns childFolders .
getClientPath() - Method in class ome.model.fs.FilesetEntry
Simple field ome.model.fs.FilesetEntry.clientPath (java.lang.String)
getClosed() - Method in class ome.model.meta.Session
Simple field ome.model.meta.Session.closed (java.sql.Timestamp)
getCo2percent() - Method in class ome.model.acquisition.ImagingEnvironment
Simple field ome.model.acquisition.ImagingEnvironment.co2percent (java.lang.Double)
getCodomainMapContext(int) - Method in class ome.model.display.ChannelBinding
Gets the ome.model.display.CodomainMapContext at the given index.
getCoefficient() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.coefficient (java.lang.Double)
getColumn() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.column (java.lang.Integer)
getColumnNamingConvention() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.columnNamingConvention (java.lang.String)
getColumns() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.columns (java.lang.Integer)
getCompression() - Method in class ome.model.display.RenderingDef
Simple field ome.model.display.RenderingDef.compression (java.lang.Double)
getConfig() - Method in class ome.model.meta.Experimenter
 
getConfig() - Method in class ome.model.meta.ExperimenterGroup
 
getConn() - Method in class ome.model.meta.Node
Simple field ome.model.meta.Node.conn (java.lang.String)
getConstant() - Method in class ome.model.display.PlaneSlicingContext
Simple field ome.model.display.PlaneSlicingContext.constant (java.lang.Boolean)
getContainingEvent() - Method in class ome.model.meta.Event
Many-to-one field ome.model.meta.Event.containingEvent (ome.model.meta.Event)
getContext() - Method in class ome.model.internal.Details
reference to the entity which this Details is contained in.
getContrastMethod() - Method in class ome.model.core.LogicalChannel
Many-to-one field ome.model.core.LogicalChannel.contrastMethod (ome.model.enums.ContrastMethod)
getCorrection() - Method in class ome.model.acquisition.Objective
Many-to-one field ome.model.acquisition.Objective.correction (ome.model.enums.Correction)
getCorrectionCollar() - Method in class ome.model.acquisition.ObjectiveSettings
Simple field ome.model.acquisition.ObjectiveSettings.correctionCollar (java.lang.Double)
getCreationEvent() - Method in class ome.model.acquisition.Detector.Details
 
getCreationEvent() - Method in class ome.model.acquisition.DetectorSettings.Details
 
getCreationEvent() - Method in class ome.model.acquisition.Dichroic.Details
 
getCreationEvent() - Method in class ome.model.acquisition.Filter.Details
 
getCreationEvent() - Method in class ome.model.acquisition.FilterSet.Details
 
getCreationEvent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
getCreationEvent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
getCreationEvent() - Method in class ome.model.acquisition.ImagingEnvironment.Details
 
getCreationEvent() - Method in class ome.model.acquisition.Instrument.Details
 
getCreationEvent() - Method in class ome.model.acquisition.LightPath.Details
 
getCreationEvent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
getCreationEvent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
getCreationEvent() - Method in class ome.model.acquisition.LightSettings.Details
 
getCreationEvent() - Method in class ome.model.acquisition.LightSource.Details
 
getCreationEvent() - Method in class ome.model.acquisition.Microscope.Details
 
getCreationEvent() - Method in class ome.model.acquisition.Objective.Details
 
getCreationEvent() - Method in class ome.model.acquisition.ObjectiveSettings.Details
 
getCreationEvent() - Method in class ome.model.acquisition.OTF.Details
 
getCreationEvent() - Method in class ome.model.acquisition.StageLabel.Details
 
getCreationEvent() - Method in class ome.model.acquisition.TransmittanceRange.Details
 
getCreationEvent() - Method in class ome.model.annotations.Annotation.Details
 
getCreationEvent() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.FilterAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.FolderAnnotationLink.Details