A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

A

a00 - Variable in class ome.model.roi.AffineTransform

A00 - Static variable in class ome.model.roi.AffineTransform

a01 - Variable in class ome.model.roi.AffineTransform

A01 - Static variable in class ome.model.roi.AffineTransform

a02 - Variable in class ome.model.roi.AffineTransform

A02 - Static variable in class ome.model.roi.AffineTransform

a10 - Variable in class ome.model.roi.AffineTransform

A10 - Static variable in class ome.model.roi.AffineTransform

a11 - Variable in class ome.model.roi.AffineTransform

A11 - Static variable in class ome.model.roi.AffineTransform

a12 - Variable in class ome.model.roi.AffineTransform

A12 - Static variable in class ome.model.roi.AffineTransform

acceptFilter(Filter) - Method in class ome.model.acquisition.Arc

acceptFilter(Filter) - Method in class ome.model.acquisition.Detector

acceptFilter(Filter) - Method in class ome.model.acquisition.DetectorSettings

acceptFilter(Filter) - Method in class ome.model.acquisition.Dichroic

acceptFilter(Filter) - Method in class ome.model.acquisition.Filament

acceptFilter(Filter) - Method in class ome.model.acquisition.Filter

acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSet

acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

acceptFilter(Filter) - Method in class ome.model.acquisition.GenericExcitationSource

acceptFilter(Filter) - Method in class ome.model.acquisition.ImagingEnvironment

acceptFilter(Filter) - Method in class ome.model.acquisition.Instrument

acceptFilter(Filter) - Method in class ome.model.acquisition.Laser

acceptFilter(Filter) - Method in class ome.model.acquisition.LightEmittingDiode

acceptFilter(Filter) - Method in class ome.model.acquisition.LightPath

acceptFilter(Filter) - Method in class ome.model.acquisition.LightPathEmissionFilterLink

acceptFilter(Filter) - Method in class ome.model.acquisition.LightPathExcitationFilterLink

acceptFilter(Filter) - Method in class ome.model.acquisition.LightSettings

acceptFilter(Filter) - Method in class ome.model.acquisition.LightSource

acceptFilter(Filter) - Method in class ome.model.acquisition.Microscope

acceptFilter(Filter) - Method in class ome.model.acquisition.Objective

acceptFilter(Filter) - Method in class ome.model.acquisition.ObjectiveSettings

acceptFilter(Filter) - Method in class ome.model.acquisition.OTF

acceptFilter(Filter) - Method in class ome.model.acquisition.StageLabel

acceptFilter(Filter) - Method in class ome.model.acquisition.TransmittanceRange

acceptFilter(Filter) - Method in class ome.model.annotations.Annotation

acceptFilter(Filter) - Method in class ome.model.annotations.AnnotationAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.BasicAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.BooleanAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.ChannelAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.CommentAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.DatasetAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.DetectorAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.DichroicAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.DoubleAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.ExperimenterAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.FileAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.FilesetAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.FilterAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.FolderAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.ImageAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.InstrumentAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.LightPathAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.LightSourceAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.ListAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.LongAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.MapAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.NamespaceAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.NodeAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.NumericAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.ObjectiveAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.OriginalFileAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.PlaneInfoAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.PlateAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.ProjectAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.ReagentAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.RoiAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.ScreenAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.SessionAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.ShapeAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.TagAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.TermAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.TextAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.TimestampAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.TypeAnnotation

acceptFilter(Filter) - Method in class ome.model.annotations.WellAnnotationLink

acceptFilter(Filter) - Method in class ome.model.annotations.XmlAnnotation

acceptFilter(Filter) - Method in class ome.model.containers.Dataset

acceptFilter(Filter) - Method in class ome.model.containers.DatasetImageLink

acceptFilter(Filter) - Method in class ome.model.containers.Folder

acceptFilter(Filter) - Method in class ome.model.containers.FolderImageLink

acceptFilter(Filter) - Method in class ome.model.containers.FolderRoiLink

acceptFilter(Filter) - Method in class ome.model.containers.Project

acceptFilter(Filter) - Method in class ome.model.containers.ProjectDatasetLink

acceptFilter(Filter) - Method in class ome.model.core.Channel

acceptFilter(Filter) - Method in class ome.model.core.Image

acceptFilter(Filter) - Method in class ome.model.core.LogicalChannel

acceptFilter(Filter) - Method in class ome.model.core.OriginalFile

acceptFilter(Filter) - Method in class ome.model.core.Pixels

acceptFilter(Filter) - Method in class ome.model.core.PixelsOriginalFileMap

acceptFilter(Filter) - Method in class ome.model.core.PlaneInfo

acceptFilter(Filter) - Method in class ome.model.display.ChannelBinding

acceptFilter(Filter) - Method in class ome.model.display.CodomainMapContext

acceptFilter(Filter) - Method in class ome.model.display.ContrastStretchingContext

acceptFilter(Filter) - Method in class ome.model.display.PlaneSlicingContext

acceptFilter(Filter) - Method in class ome.model.display.ProjectionDef

acceptFilter(Filter) - Method in class ome.model.display.QuantumDef

acceptFilter(Filter) - Method in class ome.model.display.RenderingDef

acceptFilter(Filter) - Method in class ome.model.display.ReverseIntensityContext

acceptFilter(Filter) - Method in class ome.model.display.Thumbnail

acceptFilter(Filter) - Method in class ome.model.enums.AcquisitionMode

acceptFilter(Filter) - Method in class ome.model.enums.AdminPrivilege

acceptFilter(Filter) - Method in class ome.model.enums.ArcType

acceptFilter(Filter) - Method in class ome.model.enums.Binning

acceptFilter(Filter) - Method in class ome.model.enums.ChecksumAlgorithm

acceptFilter(Filter) - Method in class ome.model.enums.ContrastMethod

acceptFilter(Filter) - Method in class ome.model.enums.Correction

acceptFilter(Filter) - Method in class ome.model.enums.DetectorType

acceptFilter(Filter) - Method in class ome.model.enums.DimensionOrder

acceptFilter(Filter) - Method in class ome.model.enums.EventType

acceptFilter(Filter) - Method in class ome.model.enums.ExperimentType

acceptFilter(Filter) - Method in class ome.model.enums.Family

acceptFilter(Filter) - Method in class ome.model.enums.FilamentType

acceptFilter(Filter) - Method in class ome.model.enums.FilterType

acceptFilter(Filter) - Method in class ome.model.enums.Format

acceptFilter(Filter) - Method in class ome.model.enums.Illumination

acceptFilter(Filter) - Method in class ome.model.enums.Immersion

acceptFilter(Filter) - Method in class ome.model.enums.LaserMedium

acceptFilter(Filter) - Method in class ome.model.enums.LaserType

acceptFilter(Filter) - Method in class ome.model.enums.Medium

acceptFilter(Filter) - Method in class ome.model.enums.MicrobeamManipulationType

acceptFilter(Filter) - Method in class ome.model.enums.MicroscopeType

acceptFilter(Filter) - Method in class ome.model.enums.PhotometricInterpretation

acceptFilter(Filter) - Method in class ome.model.enums.PixelsType

acceptFilter(Filter) - Method in class ome.model.enums.ProjectionAxis

acceptFilter(Filter) - Method in class ome.model.enums.ProjectionType

acceptFilter(Filter) - Method in class ome.model.enums.Pulse

acceptFilter(Filter) - Method in class ome.model.enums.RenderingModel

acceptFilter(Filter) - Method in class ome.model.experiment.Experiment

acceptFilter(Filter) - Method in class ome.model.experiment.MicrobeamManipulation

acceptFilter(Filter) - Method in class ome.model.fs.Fileset

acceptFilter(Filter) - Method in class ome.model.fs.FilesetEntry

acceptFilter(Filter) - Method in class ome.model.fs.FilesetJobLink

acceptFilter(Filter) - Method in class ome.model.internal.Details

acceptFilter(Filter) - Method in class ome.model.internal.Link

acceptFilter(Filter) - Method in class ome.model.jobs.ImportJob

Deprecated.

acceptFilter(Filter) - Method in class ome.model.jobs.IndexingJob

acceptFilter(Filter) - Method in class ome.model.jobs.IntegrityCheckJob

acceptFilter(Filter) - Method in class ome.model.jobs.Job

acceptFilter(Filter) - Method in class ome.model.jobs.JobOriginalFileLink

acceptFilter(Filter) - Method in class ome.model.jobs.JobStatus

acceptFilter(Filter) - Method in class ome.model.jobs.MetadataImportJob

acceptFilter(Filter) - Method in class ome.model.jobs.ParseJob

acceptFilter(Filter) - Method in class ome.model.jobs.PixelDataJob

acceptFilter(Filter) - Method in class ome.model.jobs.ScriptJob

acceptFilter(Filter) - Method in class ome.model.jobs.ThumbnailGenerationJob

acceptFilter(Filter) - Method in class ome.model.jobs.UploadJob

acceptFilter(Filter) - Method in class ome.model.meta.DBPatch

acceptFilter(Filter) - Method in class ome.model.meta.Event

acceptFilter(Filter) - Method in class ome.model.meta.EventLog

acceptFilter(Filter) - Method in class ome.model.meta.Experimenter

acceptFilter(Filter) - Method in class ome.model.meta.ExperimenterGroup

acceptFilter(Filter) - Method in class ome.model.meta.ExternalInfo

acceptFilter(Filter) - Method in class ome.model.meta.GroupExperimenterMap

acceptFilter(Filter) - Method in class ome.model.meta.Namespace

acceptFilter(Filter) - Method in class ome.model.meta.Node

acceptFilter(Filter) - Method in class ome.model.meta.Session

acceptFilter(Filter) - Method in class ome.model.meta.Share

acceptFilter(Filter) - Method in class ome.model.meta.ShareMember

acceptFilter(Filter) - Method in class ome.model.roi.AffineTransform

acceptFilter(Filter) - Method in class ome.model.roi.Ellipse

acceptFilter(Filter) - Method in class ome.model.roi.Label

acceptFilter(Filter) - Method in class ome.model.roi.Line

acceptFilter(Filter) - Method in class ome.model.roi.Mask

acceptFilter(Filter) - Method in class ome.model.roi.Path

Deprecated.

acceptFilter(Filter) - Method in class ome.model.roi.Point

acceptFilter(Filter) - Method in class ome.model.roi.Polygon

acceptFilter(Filter) - Method in class ome.model.roi.Polyline

acceptFilter(Filter) - Method in class ome.model.roi.Rectangle

acceptFilter(Filter) - Method in class ome.model.roi.Roi

acceptFilter(Filter) - Method in class ome.model.roi.Shape

acceptFilter(Filter) - Method in class ome.model.screen.Plate

acceptFilter(Filter) - Method in class ome.model.screen.PlateAcquisition

acceptFilter(Filter) - Method in class ome.model.screen.Reagent

acceptFilter(Filter) - Method in class ome.model.screen.Screen

acceptFilter(Filter) - Method in class ome.model.screen.ScreenPlateLink

acceptFilter(Filter) - Method in class ome.model.screen.Well

acceptFilter(Filter) - Method in class ome.model.screen.WellReagentLink

acceptFilter(Filter) - Method in class ome.model.screen.WellSample

acceptFilter(Filter) - Method in class ome.model.stats.StatsInfo

acceptFilter(Filter) - Method in class ome.model.units.ElectricPotential

acceptFilter(Filter) - Method in class ome.model.units.Frequency

acceptFilter(Filter) - Method in class ome.model.units.Length

acceptFilter(Filter) - Method in class ome.model.units.Power

acceptFilter(Filter) - Method in class ome.model.units.Pressure

acceptFilter(Filter) - Method in class ome.model.units.Temperature

acceptFilter(Filter) - Method in class ome.model.units.Time

acceptFilter(Filter) - Method in interface ome.util.Filterable

acceptFilter(Filter) - Method in class ome.util.PermDetails

ACLCreateViolation - Exception in ome.conditions.acl

User does not have permissions to perform given action.

ACLCreateViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLCreateViolation

ACLDeleteViolation - Exception in ome.conditions.acl

User does not have permissions to perform given action.

ACLDeleteViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLDeleteViolation

ACLLoadViolation - Exception in ome.conditions.acl

User does not have permissions to perform given action.

ACLLoadViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLLoadViolation

ACLUpdateViolation - Exception in ome.conditions.acl

User does not have permissions to perform given action.

ACLUpdateViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLUpdateViolation

ACLViolation - Exception in ome.conditions.acl

User has attempted an action which is not permitted by the Permissions of a given instance.

ACLViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLViolation

acquisitionData - Variable in class ome.parameters.Options

acquisitionDate - Variable in class ome.model.core.Image

ACQUISITIONDATE - Static variable in class ome.model.core.Image

AcquisitionMode - Class in ome.model.enums

AcquisitionMode() - Constructor for class ome.model.enums.AcquisitionMode

AcquisitionMode(Long) - Constructor for class ome.model.enums.AcquisitionMode

AcquisitionMode(Long, boolean) - Constructor for class ome.model.enums.AcquisitionMode

Main constructor.

AcquisitionMode(String) - Constructor for class ome.model.enums.AcquisitionMode

AcquisitionMode.Details - Class in ome.model.enums

action - Variable in class ome.model.meta.EventLog

ACTION - Static variable in class ome.model.meta.EventLog

active - Variable in class ome.model.display.ChannelBinding

ACTIVE - Static variable in class ome.model.display.ChannelBinding

active - Variable in class ome.model.display.ProjectionDef

ACTIVE - Static variable in class ome.model.display.ProjectionDef

active - Variable in class ome.model.meta.Share

ACTIVE - Static variable in class ome.model.meta.Share

activeSession(String) - Method in class ome.util.actions.PostgresSqlAction

activeSession(String) - Method in interface ome.util.SqlAction

Returns whether the given string is the UUID of a session that is currently active.

Add(Conversion...) - Static method in class ome.model.units.Conversion

Static helper for creating Conversion.Add instances.

Add(Conversion[]) - Constructor for class ome.model.units.Conversion.Add

add(QueryParameter) - Method in class ome.parameters.Parameters

add(String) - Method in class ome.parameters.Period

addAlgorithm(String) - Method in class ome.parameters.Parameters

addAll(Parameters) - Method in class ome.parameters.Parameters

adds all the information from the passed in Parameters instance to this instance.

addAll(QueryParameter[]) - Method in class ome.parameters.Parameters

adds all the information from the passed in Parameters instance to this instance.

addAnnotationAnnotationLink(AnnotationAnnotationLink) - Method in class ome.model.annotations.Annotation

use instead of setAnnotationLinks .

addAnnotationAnnotationLink(AnnotationAnnotationLink, boolean) - Method in class ome.model.annotations.Annotation

Adds a ome.model.annotations.AnnotationAnnotationLink to annotationLinks, allowing for recursion -- whether or not addAnnotationAnnotationLink will be called on the addition if it is loaded

addAnnotationAnnotationLinkSet(Collection<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation

use like addAnnotationAnnotationLink.

addBoolean(String, Boolean) - Method in class ome.parameters.Parameters

addChannel(Channel) - Method in class ome.model.core.LogicalChannel

use instead of setChannels .

addChannel(Channel) - Method in class ome.model.core.Pixels

use instead of setChannels .

addChannelAnnotationLink(ChannelAnnotationLink) - Method in class ome.model.core.Channel

use instead of setAnnotationLinks .

addChannelAnnotationLink(ChannelAnnotationLink, boolean) - Method in class ome.model.core.Channel

Adds a ome.model.annotations.ChannelAnnotationLink to annotationLinks, allowing for recursion -- whether or not addChannelAnnotationLink will be called on the addition if it is loaded

addChannelAnnotationLinkSet(Collection<ChannelAnnotationLink>) - Method in class ome.model.core.Channel

use like addChannelAnnotationLink.

addChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef

use instead of setWaveRendering .

addChannelBindingSet(Collection<ChannelBinding>) - Method in class ome.model.display.RenderingDef

use like addChannelBinding.

addChannelSet(Collection<Channel>) - Method in class ome.model.core.LogicalChannel

use like addChannel.

addChannelSet(Collection<Channel>) - Method in class ome.model.core.Pixels

use like addChannel.

addChildFolders(Folder) - Method in class ome.model.containers.Folder

use instead of setChildFolders .

addChildFoldersSet(Collection<Folder>) - Method in class ome.model.containers.Folder

use like addFolder.

addClass(Class) - Method in class ome.parameters.Parameters

addClass(String, Class) - Method in class ome.parameters.Parameters

addCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding

use instead of setSpatialDomainEnhancement .

addCodomainMapContextSet(Collection<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding

use like addCodomainMapContext.

addDatasetAnnotationLink(DatasetAnnotationLink) - Method in class ome.model.containers.Dataset

use instead of setAnnotationLinks .

addDatasetAnnotationLink(DatasetAnnotationLink, boolean) - Method in class ome.model.containers.Dataset

Adds a ome.model.annotations.DatasetAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDatasetAnnotationLink will be called on the addition if it is loaded

addDatasetAnnotationLinkSet(Collection<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset

use like addDatasetAnnotationLink.

addDatasetImageLink(DatasetImageLink) - Method in class ome.model.containers.Dataset

use instead of setImageLinks .

addDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.containers.Dataset

Adds a ome.model.containers.DatasetImageLink to imageLinks, allowing for recursion -- whether or not addDatasetImageLink will be called on the addition if it is loaded

addDatasetImageLink(DatasetImageLink) - Method in class ome.model.core.Image

use instead of setDatasetLinks .

addDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.core.Image

Adds a ome.model.containers.DatasetImageLink to datasetLinks, allowing for recursion -- whether or not addDatasetImageLink will be called on the addition if it is loaded

addDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.containers.Dataset

use like addDatasetImageLink.

addDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.core.Image

use like addDatasetImageLink.

addDetector(Detector) - Method in class ome.model.acquisition.Instrument

use instead of setDetector .

addDetectorAnnotationLink(DetectorAnnotationLink) - Method in class ome.model.acquisition.Detector

use instead of setAnnotationLinks .

addDetectorAnnotationLink(DetectorAnnotationLink, boolean) - Method in class ome.model.acquisition.Detector

Adds a ome.model.annotations.DetectorAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDetectorAnnotationLink will be called on the addition if it is loaded

addDetectorAnnotationLinkSet(Collection<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector

use like addDetectorAnnotationLink.

addDetectorSet(Collection<Detector>) - Method in class ome.model.acquisition.Instrument

use like addDetector.

addDichroic(Dichroic) - Method in class ome.model.acquisition.Instrument

use instead of setDichroic .

addDichroicAnnotationLink(DichroicAnnotationLink) - Method in class ome.model.acquisition.Dichroic

use instead of setAnnotationLinks .

addDichroicAnnotationLink(DichroicAnnotationLink, boolean) - Method in class ome.model.acquisition.Dichroic

Adds a ome.model.annotations.DichroicAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDichroicAnnotationLink will be called on the addition if it is loaded

addDichroicAnnotationLinkSet(Collection<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic

use like addDichroicAnnotationLink.

addDichroicSet(Collection<Dichroic>) - Method in class ome.model.acquisition.Instrument

use like addDichroic.

addEvent(Event) - Method in class ome.model.meta.Session

use instead of setEvents .

addEventLog(EventLog) - Method in class ome.model.meta.Event

use instead of setLogs .

addEventLogSet(Collection<EventLog>) - Method in class ome.model.meta.Event

use like addEventLog.

addEventSet(Collection<Event>) - Method in class ome.model.meta.Session

use like addEvent.

addExperimenterAnnotationLink(ExperimenterAnnotationLink) - Method in class ome.model.meta.Experimenter

use instead of setAnnotationLinks .

addExperimenterAnnotationLink(ExperimenterAnnotationLink, boolean) - Method in class ome.model.meta.Experimenter

Adds a ome.model.annotations.ExperimenterAnnotationLink to annotationLinks, allowing for recursion -- whether or not addExperimenterAnnotationLink will be called on the addition if it is loaded

addExperimenterAnnotationLinkSet(Collection<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter

use like addExperimenterAnnotationLink.

addExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink) - Method in class ome.model.meta.ExperimenterGroup

use instead of setAnnotationLinks .

addExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink, boolean) - Method in class ome.model.meta.ExperimenterGroup

Adds a ome.model.annotations.ExperimenterGroupAnnotationLink to annotationLinks, allowing for recursion -- whether or not addExperimenterGroupAnnotationLink will be called on the addition if it is loaded

addExperimenterGroupAnnotationLinkSet(Collection<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup

use like addExperimenterGroupAnnotationLink.

addExtendedRestrictions(Set<String>) - Method in class ome.model.internal.Permissions

addFilesetAnnotationLink(FilesetAnnotationLink) - Method in class ome.model.fs.Fileset

use instead of setAnnotationLinks .

addFilesetAnnotationLink(FilesetAnnotationLink, boolean) - Method in class ome.model.fs.Fileset

Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFilesetAnnotationLink will be called on the addition if it is loaded

addFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset

use like addFilesetAnnotationLink.

addFilesetEntry(FilesetEntry) - Method in class ome.model.core.OriginalFile

use instead of setFilesetEntries .

addFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset

use instead of setUsedFiles .

addFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.core.OriginalFile

use like addFilesetEntry.

addFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.fs.Fileset

use like addFilesetEntry.

addFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset

use instead of setJobLinks .

addFilesetJobLink(FilesetJobLink, boolean) - Method in class ome.model.fs.Fileset

Adds a ome.model.fs.FilesetJobLink to jobLinks, allowing for recursion -- whether or not addFilesetJobLink will be called on the addition if it is loaded

addFilesetJobLinkSet(Collection<FilesetJobLink>) - Method in class ome.model.fs.Fileset

use like addFilesetJobLink.

addFilter(Filter) - Method in class ome.model.acquisition.Instrument

use instead of setFilter .

addFilterAnnotationLink(FilterAnnotationLink) - Method in class ome.model.acquisition.Filter

use instead of setAnnotationLinks .

addFilterAnnotationLink(FilterAnnotationLink, boolean) - Method in class ome.model.acquisition.Filter

Adds a ome.model.annotations.FilterAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFilterAnnotationLink will be called on the addition if it is loaded

addFilterAnnotationLinkSet(Collection<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter

use like addFilterAnnotationLink.

addFiltered(String) - Method in class ome.model.internal.Details

consider the collection named by collectionName to be a "filtered" representation of the DB.

addFiltered(Collection<String>) - Method in class ome.model.internal.Details

consider all the collections named by the elements of collection to be a "filtered" representation of the DB.

addFilterSet(Collection<Filter>) - Method in class ome.model.acquisition.Instrument

use like addFilter.

addFilterSet(FilterSet) - Method in class ome.model.acquisition.Instrument

use instead of setFilterSet .

addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.Filter

use instead of setEmissionFilterLink .

addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.Filter

Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addFilterSetEmissionFilterLink will be called on the addition if it is loaded

addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.FilterSet

use instead of setEmissionFilterLink .

addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet

Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addFilterSetEmissionFilterLink will be called on the addition if it is loaded

addFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter

use like addFilterSetEmissionFilterLink.

addFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet

use like addFilterSetEmissionFilterLink.

addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.Filter

use instead of setExcitationFilterLink .

addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.Filter

Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addFilterSetExcitationFilterLink will be called on the addition if it is loaded

addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.FilterSet

use instead of setExcitationFilterLink .

addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet

Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addFilterSetExcitationFilterLink will be called on the addition if it is loaded

addFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter

use like addFilterSetExcitationFilterLink.

addFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet

use like addFilterSetExcitationFilterLink.

addFilterSetSet(Collection<FilterSet>) - Method in class ome.model.acquisition.Instrument

use like addFilterSet.

addFolderAnnotationLink(FolderAnnotationLink) - Method in class ome.model.containers.Folder

use instead of setAnnotationLinks .

addFolderAnnotationLink(FolderAnnotationLink, boolean) - Method in class ome.model.containers.Folder

Adds a ome.model.annotations.FolderAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFolderAnnotationLink will be called on the addition if it is loaded

addFolderAnnotationLinkSet(Collection<FolderAnnotationLink>) - Method in class ome.model.containers.Folder

use like addFolderAnnotationLink.

addFolderImageLink(FolderImageLink) - Method in class ome.model.containers.Folder

use instead of setImageLinks .

addFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.containers.Folder

Adds a ome.model.containers.FolderImageLink to imageLinks, allowing for recursion -- whether or not addFolderImageLink will be called on the addition if it is loaded

addFolderImageLink(FolderImageLink) - Method in class ome.model.core.Image

use instead of setFolderLinks .

addFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.core.Image

Adds a ome.model.containers.FolderImageLink to folderLinks, allowing for recursion -- whether or not addFolderImageLink will be called on the addition if it is loaded

addFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.containers.Folder

use like addFolderImageLink.

addFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.core.Image

use like addFolderImageLink.

addFolderRoiLink(FolderRoiLink) - Method in class ome.model.containers.Folder

use instead of setRoiLinks .

addFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.containers.Folder

Adds a ome.model.containers.FolderRoiLink to roiLinks, allowing for recursion -- whether or not addFolderRoiLink will be called on the addition if it is loaded

addFolderRoiLink(FolderRoiLink) - Method in class ome.model.roi.Roi

use instead of setFolderLinks .

addFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.roi.Roi

Adds a ome.model.containers.FolderRoiLink to folderLinks, allowing for recursion -- whether or not addFolderRoiLink will be called on the addition if it is loaded

addFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.containers.Folder

use like addFolderRoiLink.

addFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.roi.Roi

use like addFolderRoiLink.

addGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter

use instead of setGroupExperimenterMap .

addGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.Experimenter

Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap, allowing for recursion -- whether or not addGroupExperimenterMap will be called on the addition if it is loaded

addGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.ExperimenterGroup

use instead of setGroupExperimenterMap .

addGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.ExperimenterGroup

Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap, allowing for recursion -- whether or not addGroupExperimenterMap will be called on the addition if it is loaded

addGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter

use like addGroupExperimenterMap.

addGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup

use like addGroupExperimenterMap.

addId(Long) - Method in class ome.parameters.Parameters

addIds(Collection) - Method in class ome.parameters.Parameters

addImage(Image) - Method in class ome.model.fs.Fileset

use instead of setImages .

addImageAnnotationLink(ImageAnnotationLink) - Method in class ome.model.core.Image

use instead of setAnnotationLinks .

addImageAnnotationLink(ImageAnnotationLink, boolean) - Method in class ome.model.core.Image

Adds a ome.model.annotations.ImageAnnotationLink to annotationLinks, allowing for recursion -- whether or not addImageAnnotationLink will be called on the addition if it is loaded

addImageAnnotationLinkSet(Collection<ImageAnnotationLink>) - Method in class ome.model.core.Image

use like addImageAnnotationLink.

addImageSet(Collection<Image>) - Method in class ome.model.fs.Fileset

use like addImage.

addInstrumentAnnotationLink(InstrumentAnnotationLink) - Method in class ome.model.acquisition.Instrument

use instead of setAnnotationLinks .

addInstrumentAnnotationLink(InstrumentAnnotationLink, boolean) - Method in class ome.model.acquisition.Instrument

Adds a ome.model.annotations.InstrumentAnnotationLink to annotationLinks, allowing for recursion -- whether or not addInstrumentAnnotationLink will be called on the addition if it is loaded

addInstrumentAnnotationLinkSet(Collection<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument

use like addInstrumentAnnotationLink.

addInteger(String, Integer) - Method in class ome.parameters.Parameters

addJobOriginalFileLink(JobOriginalFileLink) - Method in class ome.model.jobs.Job

use instead of setOriginalFileLinks .

addJobOriginalFileLink(JobOriginalFileLink, boolean) - Method in class ome.model.jobs.Job

Adds a ome.model.jobs.JobOriginalFileLink to originalFileLinks, allowing for recursion -- whether or not addJobOriginalFileLink will be called on the addition if it is loaded

addJobOriginalFileLinkSet(Collection<JobOriginalFileLink>) - Method in class ome.model.jobs.Job

use like addJobOriginalFileLink.

addLightPathAnnotationLink(LightPathAnnotationLink) - Method in class ome.model.acquisition.LightPath

use instead of setAnnotationLinks .

addLightPathAnnotationLink(LightPathAnnotationLink, boolean) - Method in class ome.model.acquisition.LightPath

Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks, allowing for recursion -- whether or not addLightPathAnnotationLink will be called on the addition if it is loaded

addLightPathAnnotationLinkSet(Collection<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath

use like addLightPathAnnotationLink.

addLightPathEmissionFilterLink(LightPathEmissionFilterLink) - Method in class ome.model.acquisition.LightPath

use instead of setEmissionFilterLink .

addLightPathEmissionFilterLink(LightPathEmissionFilterLink, boolean) - Method in class ome.model.acquisition.LightPath

Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addLightPathEmissionFilterLink will be called on the addition if it is loaded

addLightPathEmissionFilterLinkSet(Collection<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath

use like addLightPathEmissionFilterLink.

addLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath

use instead of setExcitationFilterLink .

addLightPathExcitationFilterLink(LightPathExcitationFilterLink, boolean) - Method in class ome.model.acquisition.LightPath

Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addLightPathExcitationFilterLink will be called on the addition if it is loaded

addLightPathExcitationFilterLinkSet(Collection<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath

use like addLightPathExcitationFilterLink.

addLightSettings(LightSettings) - Method in class ome.model.experiment.MicrobeamManipulation

use instead of setLightSourceSettings .

addLightSettingsSet(Collection<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation

use like addLightSettings.

addLightSource(LightSource) - Method in class ome.model.acquisition.Instrument

use instead of setLightSource .

addLightSourceAnnotationLink(LightSourceAnnotationLink) - Method in class ome.model.acquisition.LightSource

use instead of setAnnotationLinks .

addLightSourceAnnotationLink(LightSourceAnnotationLink, boolean) - Method in class ome.model.acquisition.LightSource

Adds a ome.model.annotations.LightSourceAnnotationLink to annotationLinks, allowing for recursion -- whether or not addLightSourceAnnotationLink will be called on the addition if it is loaded

addLightSourceAnnotationLinkSet(Collection<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource

use like addLightSourceAnnotationLink.

addLightSourceSet(Collection<LightSource>) - Method in class ome.model.acquisition.Instrument

use like addLightSource.

addList(String, List) - Method in class ome.parameters.Parameters

addLong(String, Long) - Method in class ome.parameters.Parameters

addMap(String, Map) - Method in class ome.parameters.Parameters

addMessageWithinDbPatchEnd(String, int, String) - Method in interface ome.util.SqlAction

Add a unique message to the DB patch table within the current patch.

addMessageWithinDbPatchEnd(String, int, String) - Method in class ome.util.SqlAction.Impl

addMessageWithinDbPatchStart(String, int, String) - Method in interface ome.util.SqlAction

Add a unique message to the DB patch table within the current patch.

addMessageWithinDbPatchStart(String, int, String) - Method in class ome.util.SqlAction.Impl

addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.experiment.Experiment

use instead of setMicrobeamManipulation .

addMicrobeamManipulationSet(Collection<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment

use like addMicrobeamManipulation.

addMimetypes(Collection<String>, MapSqlParameterSource) - Method in class ome.util.SqlAction.Impl

Returns the "and_mimetype" clause which must be appended to a given query.

addNamespaceAnnotationLink(NamespaceAnnotationLink) - Method in class ome.model.meta.Namespace

use instead of setAnnotationLinks .

addNamespaceAnnotationLink(NamespaceAnnotationLink, boolean) - Method in class ome.model.meta.Namespace

Adds a ome.model.annotations.NamespaceAnnotationLink to annotationLinks, allowing for recursion -- whether or not addNamespaceAnnotationLink will be called on the addition if it is loaded

addNamespaceAnnotationLinkSet(Collection<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace

use like addNamespaceAnnotationLink.

addNodeAnnotationLink(NodeAnnotationLink) - Method in class ome.model.meta.Node

use instead of setAnnotationLinks .

addNodeAnnotationLink(NodeAnnotationLink, boolean) - Method in class ome.model.meta.Node

Adds a ome.model.annotations.NodeAnnotationLink to annotationLinks, allowing for recursion -- whether or not addNodeAnnotationLink will be called on the addition if it is loaded

addNodeAnnotationLinkSet(Collection<NodeAnnotationLink>) - Method in class ome.model.meta.Node

use like addNodeAnnotationLink.

addObjective(Objective) - Method in class ome.model.acquisition.Instrument

use instead of setObjective .

addObjectiveAnnotationLink(ObjectiveAnnotationLink) - Method in class ome.model.acquisition.Objective

use instead of setAnnotationLinks .

addObjectiveAnnotationLink(ObjectiveAnnotationLink, boolean) - Method in class ome.model.acquisition.Objective

Adds a ome.model.annotations.ObjectiveAnnotationLink to annotationLinks, allowing for recursion -- whether or not addObjectiveAnnotationLink will be called on the addition if it is loaded

addObjectiveAnnotationLinkSet(Collection<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective

use like addObjectiveAnnotationLink.

addObjectiveSet(Collection<Objective>) - Method in class ome.model.acquisition.Instrument

use like addObjective.

addOriginalFileAnnotationLink(OriginalFileAnnotationLink) - Method in class ome.model.core.OriginalFile

use instead of setAnnotationLinks .

addOriginalFileAnnotationLink(OriginalFileAnnotationLink, boolean) - Method in class ome.model.core.OriginalFile

Adds a ome.model.annotations.OriginalFileAnnotationLink to annotationLinks, allowing for recursion -- whether or not addOriginalFileAnnotationLink will be called on the addition if it is loaded

addOriginalFileAnnotationLinkSet(Collection<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile

use like addOriginalFileAnnotationLink.

addOTF(OTF) - Method in class ome.model.acquisition.Instrument

use instead of setOtf .

addOTFSet(Collection<OTF>) - Method in class ome.model.acquisition.Instrument

use like addOTF.

addPixels(Pixels) - Method in class ome.model.core.Image

use instead of setPixels .

addPixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.OriginalFile

use instead of setPixelsFileMaps .

addPixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.OriginalFile

Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps, allowing for recursion -- whether or not addPixelsOriginalFileMap will be called on the addition if it is loaded

addPixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.Pixels

use instead of setPixelsFileMaps .

addPixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.Pixels

Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps, allowing for recursion -- whether or not addPixelsOriginalFileMap will be called on the addition if it is loaded

addPixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile

use like addPixelsOriginalFileMap.

addPixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels

use like addPixelsOriginalFileMap.

addPixelsSet(Collection<Pixels>) - Method in class ome.model.core.Image

use like addPixels.

addPlaneInfo(PlaneInfo) - Method in class ome.model.core.Pixels

use instead of setPlaneInfo .

addPlaneInfoAnnotationLink(PlaneInfoAnnotationLink) - Method in class ome.model.core.PlaneInfo

use instead of setAnnotationLinks .

addPlaneInfoAnnotationLink(PlaneInfoAnnotationLink, boolean) - Method in class ome.model.core.PlaneInfo

Adds a ome.model.annotations.PlaneInfoAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlaneInfoAnnotationLink will be called on the addition if it is loaded

addPlaneInfoAnnotationLinkSet(Collection<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo

use like addPlaneInfoAnnotationLink.

addPlaneInfoSet(Collection<PlaneInfo>) - Method in class ome.model.core.Pixels

use like addPlaneInfo.

addPlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.Plate

use instead of setPlateAcquisitions .

addPlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink) - Method in class ome.model.screen.PlateAcquisition

use instead of setAnnotationLinks .

addPlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink, boolean) - Method in class ome.model.screen.PlateAcquisition

Adds a ome.model.annotations.PlateAcquisitionAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAcquisitionAnnotationLink will be called on the addition if it is loaded

addPlateAcquisitionAnnotationLinkSet(Collection<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition

use like addPlateAcquisitionAnnotationLink.

addPlateAcquisitionSet(Collection<PlateAcquisition>) - Method in class ome.model.screen.Plate

use like addPlateAcquisition.

addPlateAnnotationLink(PlateAnnotationLink) - Method in class ome.model.screen.Plate

use instead of setAnnotationLinks .

addPlateAnnotationLink(PlateAnnotationLink, boolean) - Method in class ome.model.screen.Plate

Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAnnotationLink will be called on the addition if it is loaded

addPlateAnnotationLinkSet(Collection<PlateAnnotationLink>) - Method in class ome.model.screen.Plate

use like addPlateAnnotationLink.

addProjectAnnotationLink(ProjectAnnotationLink) - Method in class ome.model.containers.Project

use instead of setAnnotationLinks .

addProjectAnnotationLink(ProjectAnnotationLink, boolean) - Method in class ome.model.containers.Project

Adds a ome.model.annotations.ProjectAnnotationLink to annotationLinks, allowing for recursion -- whether or not addProjectAnnotationLink will be called on the addition if it is loaded

addProjectAnnotationLinkSet(Collection<ProjectAnnotationLink>) - Method in class ome.model.containers.Project

use like addProjectAnnotationLink.

addProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Dataset

use instead of setProjectLinks .

addProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Dataset

Adds a ome.model.containers.ProjectDatasetLink to projectLinks, allowing for recursion -- whether or not addProjectDatasetLink will be called on the addition if it is loaded

addProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Project

use instead of setDatasetLinks .

addProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Project

Adds a ome.model.containers.ProjectDatasetLink to datasetLinks, allowing for recursion -- whether or not addProjectDatasetLink will be called on the addition if it is loaded

addProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset

use like addProjectDatasetLink.

addProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Project

use like addProjectDatasetLink.

addProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef

use instead of setProjections .

addProjectionDefSet(Collection<ProjectionDef>) - Method in class ome.model.display.RenderingDef

use like addProjectionDef.

addReagent(Reagent) - Method in class ome.model.screen.Screen

use instead of setReagents .

addReagentAnnotationLink(ReagentAnnotationLink) - Method in class ome.model.screen.Reagent

use instead of setAnnotationLinks .

addReagentAnnotationLink(ReagentAnnotationLink, boolean) - Method in class ome.model.screen.Reagent

Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks, allowing for recursion -- whether or not addReagentAnnotationLink will be called on the addition if it is loaded

addReagentAnnotationLinkSet(Collection<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent

use like addReagentAnnotationLink.

addReagentSet(Collection<Reagent>) - Method in class ome.model.screen.Screen

use like addReagent.

addRenderingDef(RenderingDef) - Method in class ome.model.core.Pixels

use instead of setSettings .

addRenderingDefSet(Collection<RenderingDef>) - Method in class ome.model.core.Pixels

use like addRenderingDef.

addRoi(Roi) - Method in class ome.model.core.Image

use instead of setRois .

addRoiAnnotationLink(RoiAnnotationLink) - Method in class ome.model.roi.Roi

use instead of setAnnotationLinks .

addRoiAnnotationLink(RoiAnnotationLink, boolean) - Method in class ome.model.roi.Roi

Adds a ome.model.annotations.RoiAnnotationLink to annotationLinks, allowing for recursion -- whether or not addRoiAnnotationLink will be called on the addition if it is loaded

addRoiAnnotationLinkSet(Collection<RoiAnnotationLink>) - Method in class ome.model.roi.Roi

use like addRoiAnnotationLink.

addRoiSet(Collection<Roi>) - Method in class ome.model.core.Image

use like addRoi.

addScreenAnnotationLink(ScreenAnnotationLink) - Method in class ome.model.screen.Screen

use instead of setAnnotationLinks .

addScreenAnnotationLink(ScreenAnnotationLink, boolean) - Method in class ome.model.screen.Screen

Adds a ome.model.annotations.ScreenAnnotationLink to annotationLinks, allowing for recursion -- whether or not addScreenAnnotationLink will be called on the addition if it is loaded

addScreenAnnotationLinkSet(Collection<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen

use like addScreenAnnotationLink.

addScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Plate

use instead of setScreenLinks .

addScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Plate

Adds a ome.model.screen.ScreenPlateLink to screenLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded

addScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Screen

use instead of setPlateLinks .

addScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Screen

Adds a ome.model.screen.ScreenPlateLink to plateLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded

addScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Plate

use like addScreenPlateLink.

addScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Screen

use like addScreenPlateLink.

addSeen(Object) - Method in class ome.util.ContextFilter

addSession(Session) - Method in class ome.model.meta.Node

use instead of setSessions .

addSessionAnnotationLink(SessionAnnotationLink) - Method in class ome.model.meta.Session

use instead of setAnnotationLinks .

addSessionAnnotationLink(SessionAnnotationLink, boolean) - Method in class ome.model.meta.Session

Adds a ome.model.annotations.SessionAnnotationLink to annotationLinks, allowing for recursion -- whether or not addSessionAnnotationLink will be called on the addition if it is loaded

addSessionAnnotationLinkSet(Collection<SessionAnnotationLink>) - Method in class ome.model.meta.Session

use like addSessionAnnotationLink.

addSessionSet(Collection<Session>) - Method in class ome.model.meta.Node

use like addSession.

addSet(String, Set) - Method in class ome.parameters.Parameters

addShape(Shape) - Method in class ome.model.roi.Roi

use instead of setShapes .

addShapeAnnotationLink(ShapeAnnotationLink) - Method in class ome.model.roi.Shape

use instead of setAnnotationLinks .

addShapeAnnotationLink(ShapeAnnotationLink, boolean) - Method in class ome.model.roi.Shape

Adds a ome.model.annotations.ShapeAnnotationLink to annotationLinks, allowing for recursion -- whether or not addShapeAnnotationLink will be called on the addition if it is loaded

addShapeAnnotationLinkSet(Collection<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape

use like addShapeAnnotationLink.

addShapeSet(Collection<Shape>) - Method in class ome.model.roi.Roi

use like addShape.

addString(String, String) - Method in class ome.parameters.Parameters

addThumbnail(Thumbnail) - Method in class ome.model.core.Pixels

use instead of setThumbnails .

addThumbnailSet(Collection<Thumbnail>) - Method in class ome.model.core.Pixels

use like addThumbnail.

addViolation(ACLViolation) - Method in exception ome.conditions.acl.CollectedACLViolations

addWell(Well) - Method in class ome.model.screen.Plate

use instead of setWells .

addWellAnnotationLink(WellAnnotationLink) - Method in class ome.model.screen.Well

use instead of setAnnotationLinks .

addWellAnnotationLink(WellAnnotationLink, boolean) - Method in class ome.model.screen.Well

Adds a ome.model.annotations.WellAnnotationLink to annotationLinks, allowing for recursion -- whether or not addWellAnnotationLink will be called on the addition if it is loaded

addWellAnnotationLinkSet(Collection<WellAnnotationLink>) - Method in class ome.model.screen.Well

use like addWellAnnotationLink.

addWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Reagent

use instead of setWellLinks .

addWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Reagent

Adds a ome.model.screen.WellReagentLink to wellLinks, allowing for recursion -- whether or not addWellReagentLink will be called on the addition if it is loaded

addWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Well

use instead of setReagentLinks .

addWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Well

Adds a ome.model.screen.WellReagentLink to reagentLinks, allowing for recursion -- whether or not addWellReagentLink will be called on the addition if it is loaded

addWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Reagent

use like addWellReagentLink.

addWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Well

use like addWellReagentLink.

addWellSample(WellSample) - Method in class ome.model.core.Image

use instead of setWellSamples .

addWellSample(WellSample) - Method in class ome.model.screen.PlateAcquisition

use instead of setWellSample .

addWellSample(WellSample) - Method in class ome.model.screen.Well

use instead of setWellSamples .

addWellSampleSet(Collection<WellSample>) - Method in class ome.model.core.Image

use like addWellSample.

addWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.PlateAcquisition

use like addWellSample.

addWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.Well

use like addWellSample.

addWellSet(Collection<Well>) - Method in class ome.model.screen.Plate

use like addWell.

AdminPrivilege - Class in ome.model.enums

AdminPrivilege() - Constructor for class ome.model.enums.AdminPrivilege

AdminPrivilege(Long) - Constructor for class ome.model.enums.AdminPrivilege

AdminPrivilege(Long, boolean) - Constructor for class ome.model.enums.AdminPrivilege

Main constructor.

AdminPrivilege(String) - Constructor for class ome.model.enums.AdminPrivilege

AdminPrivilege.Details - Class in ome.model.enums

AffineTransform - Class in ome.model.roi

These filter definitions are used by the security system to eliminate non-readable objects from queries.

AffineTransform() - Constructor for class ome.model.roi.AffineTransform

AffineTransform(Long) - Constructor for class ome.model.roi.AffineTransform

AffineTransform(Long, boolean) - Constructor for class ome.model.roi.AffineTransform

Main constructor.

AffineTransform(Double, Double, Double, Double, Double, Double) - Constructor for class ome.model.roi.AffineTransform

AffineTransform.Details - Class in ome.model.roi

afterFilter(String, Object) - Method in class ome.util.ContextFilter

afterPropertiesSet() - Method in class ome.util.MapPut

airPressure - Variable in class ome.model.acquisition.ImagingEnvironment

AIRPRESSURE - Static variable in class ome.model.acquisition.ImagingEnvironment

ALGORITHM - Static variable in class ome.parameters.Parameters

named parameter "algorithm".

allExps() - Method in class ome.parameters.Parameters

alpha - Variable in class ome.model.core.Channel

ALPHA - Static variable in class ome.model.core.Channel

alpha - Variable in class ome.model.display.ChannelBinding

ALPHA - Static variable in class ome.model.display.ChannelBinding

alpha - Variable in class ome.model.screen.Well

ALPHA - Static variable in class ome.model.screen.Well

amplificationGain - Variable in class ome.model.acquisition.Detector

AMPLIFICATIONGAIN - Static variable in class ome.model.acquisition.Detector

ANNOTATERESTRICTION - Static variable in class ome.model.internal.Permissions

Annotation - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Annotation() - Constructor for class ome.model.annotations.Annotation

Annotation(Long) - Constructor for class ome.model.annotations.Annotation

Annotation(Long, boolean) - Constructor for class ome.model.annotations.Annotation

Main constructor.

Annotation.Details - Class in ome.model.annotations

AnnotationAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

AnnotationAnnotationLink() - Constructor for class ome.model.annotations.AnnotationAnnotationLink

AnnotationAnnotationLink(Long) - Constructor for class ome.model.annotations.AnnotationAnnotationLink

AnnotationAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.AnnotationAnnotationLink

Main constructor.

AnnotationAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.AnnotationAnnotationLink

AnnotationAnnotationLink.Details - Class in ome.model.annotations

annotationLinks - Variable in class ome.model.acquisition.Detector

ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector

annotationLinks - Variable in class ome.model.acquisition.Dichroic

ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic

annotationLinks - Variable in class ome.model.acquisition.Filter

ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter

annotationLinks - Variable in class ome.model.acquisition.Instrument

ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument

annotationLinks - Variable in class ome.model.acquisition.LightPath

ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath

annotationLinks - Variable in class ome.model.acquisition.LightSource

ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource

annotationLinks - Variable in class ome.model.acquisition.Objective

ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective

annotationLinks - Variable in class ome.model.annotations.Annotation

ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation

annotationLinks - Variable in class ome.model.containers.Dataset

ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset

annotationLinks - Variable in class ome.model.containers.Folder

ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder

annotationLinks - Variable in class ome.model.containers.Project

ANNOTATIONLINKS - Static variable in class ome.model.containers.Project

annotationLinks - Variable in class ome.model.core.Channel

ANNOTATIONLINKS - Static variable in class ome.model.core.Channel

annotationLinks - Variable in class ome.model.core.Image

ANNOTATIONLINKS - Static variable in class ome.model.core.Image

annotationLinks - Variable in class ome.model.core.OriginalFile

ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile

annotationLinks - Variable in class ome.model.core.PlaneInfo

ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo

annotationLinks - Variable in class ome.model.fs.Fileset

ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset

annotationLinks - Variable in class ome.model.meta.Experimenter

ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter

annotationLinks - Variable in class ome.model.meta.ExperimenterGroup

ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup

annotationLinks - Variable in class ome.model.meta.Namespace

ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace

annotationLinks - Variable in class ome.model.meta.Node

ANNOTATIONLINKS - Static variable in class ome.model.meta.Node

annotationLinks - Variable in class ome.model.meta.Session

ANNOTATIONLINKS - Static variable in class ome.model.meta.Session

annotationLinks - Variable in class ome.model.roi.Roi

ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi

annotationLinks - Variable in class ome.model.roi.Shape

ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape

annotationLinks - Variable in class ome.model.screen.Plate

ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate

annotationLinks - Variable in class ome.model.screen.PlateAcquisition

ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition

annotationLinks - Variable in class ome.model.screen.Reagent

ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent

annotationLinks - Variable in class ome.model.screen.Screen

ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen

annotationLinks - Variable in class ome.model.screen.Well

ANNOTATIONLINKS - Static variable in class ome.model.screen.Well

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Detector

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Dichroic

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Instrument

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightSource

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Objective

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.annotations.Annotation

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Project

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Channel

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.OriginalFile

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.PlaneInfo

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.fs.Fileset

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Experimenter

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.ExperimenterGroup

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Namespace

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Node

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Session

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Roi

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Shape

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Plate

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.PlateAcquisition

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Reagent

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Screen

ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Well

ApiUsageException - Exception in ome.conditions

Alerts a user to a misuse of an Omero method call.

ApiUsageException(String) - Constructor for exception ome.conditions.ApiUsageException

Arc - Class in ome.model.acquisition

Arc() - Constructor for class ome.model.acquisition.Arc

Arc(Long) - Constructor for class ome.model.acquisition.Arc

Arc(Long, boolean) - Constructor for class ome.model.acquisition.Arc

Main constructor.

Arc(ArcType) - Constructor for class ome.model.acquisition.Arc

archived - Variable in class ome.model.core.Image

ARCHIVED - Static variable in class ome.model.core.Image

ArcType - Class in ome.model.enums

ArcType() - Constructor for class ome.model.enums.ArcType

ArcType(Long) - Constructor for class ome.model.enums.ArcType

ArcType(Long, boolean) - Constructor for class ome.model.enums.ArcType

Main constructor.

ArcType(String) - Constructor for class ome.model.enums.ArcType

ArcType.Details - Class in ome.model.enums

args() - Method in class ome.util.SqlAction.DeleteLog

asBigInteger() - Method in class ome.util.Counter

assemble(Serializable, Object) - Method in class ome.model.units.GenericEnumType

atime - Variable in class ome.model.core.OriginalFile

ATIME - Static variable in class ome.model.core.OriginalFile

attenuation - Variable in class ome.model.acquisition.LightSettings

ATTENUATION - Static variable in class ome.model.acquisition.LightSettings

AuthenticationException - Exception in ome.conditions

Invalid username and/or credential provided.

AuthenticationException(String) - Constructor for exception ome.conditions.AuthenticationException

axis - Variable in class ome.model.display.ProjectionDef

AXIS - Static variable in class ome.model.display.ProjectionDef

B

backOff - Variable in exception ome.conditions.ConcurrencyException

BasicAnnotation - Class in ome.model.annotations

BasicAnnotation() - Constructor for class ome.model.annotations.BasicAnnotation

BasicAnnotation(Long) - Constructor for class ome.model.annotations.BasicAnnotation

BasicAnnotation(Long, boolean) - Constructor for class ome.model.annotations.BasicAnnotation

Main constructor.

beforeFilter(String, Object) - Method in class ome.util.ContextFilter

BigResult - Exception in ome.model.units

Checked exception which is thrown from unit methods which can possibly overflow.

BigResult(BigDecimal, String) - Constructor for exception ome.model.units.BigResult

binning - Variable in class ome.model.acquisition.DetectorSettings

BINNING - Static variable in class ome.model.acquisition.DetectorSettings

Binning - Class in ome.model.enums

Binning() - Constructor for class ome.model.enums.Binning

Binning(Long) - Constructor for class ome.model.enums.Binning

Binning(Long, boolean) - Constructor for class ome.model.enums.Binning

Main constructor.

Binning(String) - Constructor for class ome.model.enums.Binning

Binning.Details - Class in ome.model.enums

bit(Permissions.Flag) - Static method in class ome.model.internal.Permissions

returns the order of the bit representing the given Permissions.Flag.

bit(Permissions.Role, Permissions.Right) - Static method in class ome.model.internal.Permissions

returns the order of the bit representing the given Permissions.Role and Permissions.Right.

BIT - Static variable in class ome.util.PixelData

Identifies the type used to store pixel values.

bitResolution - Variable in class ome.model.display.QuantumDef

BITRESOLUTION - Static variable in class ome.model.display.QuantumDef

bitSize - Variable in class ome.model.enums.PixelsType

BITSIZE - Static variable in class ome.model.enums.PixelsType

blue - Variable in class ome.model.core.Channel

BLUE - Static variable in class ome.model.core.Channel

blue - Variable in class ome.model.display.ChannelBinding

BLUE - Static variable in class ome.model.display.ChannelBinding

blue - Variable in class ome.model.screen.Well

BLUE - Static variable in class ome.model.screen.Well

BooleanAnnotation - Class in ome.model.annotations

BooleanAnnotation() - Constructor for class ome.model.annotations.BooleanAnnotation

BooleanAnnotation(Long) - Constructor for class ome.model.annotations.BooleanAnnotation

BooleanAnnotation(Long, boolean) - Constructor for class ome.model.annotations.BooleanAnnotation

Main constructor.

boolValue - Variable in class ome.model.annotations.BooleanAnnotation

BOOLVALUE - Static variable in class ome.model.annotations.BooleanAnnotation

bySymbol(String) - Static method in enum ome.model.enums.UnitsElectricPotential

bySymbol(String) - Static method in enum ome.model.enums.UnitsFrequency

bySymbol(String) - Static method in enum ome.model.enums.UnitsLength

bySymbol(String) - Static method in enum ome.model.enums.UnitsPower

bySymbol(String) - Static method in enum ome.model.enums.UnitsPressure

bySymbol(String) - Static method in enum ome.model.enums.UnitsTemperature

bySymbol(String) - Static method in enum ome.model.enums.UnitsTime

BYTE - Static variable in class ome.util.PixelData

Identifies the type used to store pixel values.

bytes - Variable in class ome.model.roi.Mask

BYTES - Static variable in class ome.model.roi.Mask

bytesPerPixel - Variable in class ome.util.PixelData

The number of bytes per pixel.

bytesPerPixel() - Method in class ome.util.PixelData

Returns the number of byte per pixel for the pixel data.

C

c2c() - Method in class ome.util.ModelMapper

TODO identity versus null mappings

cache() - Method in class ome.parameters.Parameters

Deprecated.

experimental: may be wholly removed in next major version

cacheable - Variable in class ome.parameters.Options

calibratedMagnification - Variable in class ome.model.acquisition.Objective

CALIBRATEDMAGNIFICATION - Static variable in class ome.model.acquisition.Objective

call(IObject) - Method in interface ome.util.CBlock

invoke this block.

call(IObject) - Method in class ome.util.IdBlock

CBlock<E> - Interface in ome.util

Block template used to "C"ollect the results of some function called on each IObject in a collection.

cdEnd - Variable in class ome.model.display.QuantumDef

CDEND - Static variable in class ome.model.display.QuantumDef

cdStart - Variable in class ome.model.display.QuantumDef

CDSTART - Static variable in class ome.model.display.QuantumDef

CGLIB_IDENTIFIER - Static variable in class ome.util.Utils

changeGroupPermissions(Long, Long) - Method in interface ome.util.SqlAction

changeGroupPermissions(Long, Long) - Method in class ome.util.SqlAction.Impl

changeTablePermissionsForGroup(String, Long, Long) - Method in interface ome.util.SqlAction

changeTablePermissionsForGroup(String, Long, Long) - Method in class ome.util.SqlAction.Impl

Channel - Class in ome.model.core

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Channel() - Constructor for class ome.model.core.Channel

Channel(Long) - Constructor for class ome.model.core.Channel

Channel(Long, boolean) - Constructor for class ome.model.core.Channel

Main constructor.

Channel(LogicalChannel, Pixels) - Constructor for class ome.model.core.Channel

Channel.Details - Class in ome.model.core

ChannelAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ChannelAnnotationLink() - Constructor for class ome.model.annotations.ChannelAnnotationLink

ChannelAnnotationLink(Long) - Constructor for class ome.model.annotations.ChannelAnnotationLink

ChannelAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ChannelAnnotationLink

Main constructor.

ChannelAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ChannelAnnotationLink

ChannelAnnotationLink.Details - Class in ome.model.annotations

ChannelBinding - Class in ome.model.display

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ChannelBinding() - Constructor for class ome.model.display.ChannelBinding

ChannelBinding(Long) - Constructor for class ome.model.display.ChannelBinding

ChannelBinding(Long, boolean) - Constructor for class ome.model.display.ChannelBinding

Main constructor.

ChannelBinding(RenderingDef, Family, Double, Double, Double, Boolean, Boolean, Integer, Integer, Integer, Integer) - Constructor for class ome.model.display.ChannelBinding

channelBinding - Variable in class ome.model.display.CodomainMapContext

CHANNELBINDING - Static variable in class ome.model.display.CodomainMapContext

ChannelBinding.Details - Class in ome.model.display

channels - Variable in class ome.model.core.LogicalChannel

CHANNELS - Static variable in class ome.model.core.LogicalChannel

channels - Variable in class ome.model.core.Pixels

CHANNELS - Static variable in class ome.model.core.Pixels

ChecksumAlgorithm - Class in ome.model.enums

ChecksumAlgorithm() - Constructor for class ome.model.enums.ChecksumAlgorithm

ChecksumAlgorithm(Long) - Constructor for class ome.model.enums.ChecksumAlgorithm

ChecksumAlgorithm(Long, boolean) - Constructor for class ome.model.enums.ChecksumAlgorithm

Main constructor.

ChecksumAlgorithm(String) - Constructor for class ome.model.enums.ChecksumAlgorithm

ChecksumAlgorithm.Details - Class in ome.model.enums

CHGRPRESTRICTION - Static variable in class ome.model.internal.Permissions

child - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink

CHILD - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink

child() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

child - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink

CHILD - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink

child() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

child - Variable in class ome.model.acquisition.LightPathEmissionFilterLink

CHILD - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink

child() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

child - Variable in class ome.model.acquisition.LightPathExcitationFilterLink

CHILD - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink

child() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

child - Variable in class ome.model.annotations.AnnotationAnnotationLink

CHILD - Static variable in class ome.model.annotations.AnnotationAnnotationLink

child() - Method in class ome.model.annotations.AnnotationAnnotationLink

child - Variable in class ome.model.annotations.ChannelAnnotationLink

CHILD - Static variable in class ome.model.annotations.ChannelAnnotationLink

child() - Method in class ome.model.annotations.ChannelAnnotationLink

child - Variable in class ome.model.annotations.DatasetAnnotationLink

CHILD - Static variable in class ome.model.annotations.DatasetAnnotationLink

child() - Method in class ome.model.annotations.DatasetAnnotationLink

child - Variable in class ome.model.annotations.DetectorAnnotationLink

CHILD - Static variable in class ome.model.annotations.DetectorAnnotationLink

child() - Method in class ome.model.annotations.DetectorAnnotationLink

child - Variable in class ome.model.annotations.DichroicAnnotationLink

CHILD - Static variable in class ome.model.annotations.DichroicAnnotationLink

child() - Method in class ome.model.annotations.DichroicAnnotationLink

child - Variable in class ome.model.annotations.ExperimenterAnnotationLink

CHILD - Static variable in class ome.model.annotations.ExperimenterAnnotationLink

child() - Method in class ome.model.annotations.ExperimenterAnnotationLink

child - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

CHILD - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

child() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

child - Variable in class ome.model.annotations.FilesetAnnotationLink

CHILD - Static variable in class ome.model.annotations.FilesetAnnotationLink

child() - Method in class ome.model.annotations.FilesetAnnotationLink

child - Variable in class ome.model.annotations.FilterAnnotationLink

CHILD - Static variable in class ome.model.annotations.FilterAnnotationLink

child() - Method in class ome.model.annotations.FilterAnnotationLink

child - Variable in class ome.model.annotations.FolderAnnotationLink

CHILD - Static variable in class ome.model.annotations.FolderAnnotationLink

child() - Method in class ome.model.annotations.FolderAnnotationLink

child - Variable in class ome.model.annotations.ImageAnnotationLink

CHILD - Static variable in class ome.model.annotations.ImageAnnotationLink

child() - Method in class ome.model.annotations.ImageAnnotationLink

child - Variable in class ome.model.annotations.InstrumentAnnotationLink

CHILD - Static variable in class ome.model.annotations.InstrumentAnnotationLink

child() - Method in class ome.model.annotations.InstrumentAnnotationLink

child - Variable in class ome.model.annotations.LightPathAnnotationLink

CHILD - Static variable in class ome.model.annotations.LightPathAnnotationLink

child() - Method in class ome.model.annotations.LightPathAnnotationLink

child - Variable in class ome.model.annotations.LightSourceAnnotationLink

CHILD - Static variable in class ome.model.annotations.LightSourceAnnotationLink

child() - Method in class ome.model.annotations.LightSourceAnnotationLink

child - Variable in class ome.model.annotations.NamespaceAnnotationLink

CHILD - Static variable in class ome.model.annotations.NamespaceAnnotationLink

child() - Method in class ome.model.annotations.NamespaceAnnotationLink

child - Variable in class ome.model.annotations.NodeAnnotationLink

CHILD - Static variable in class ome.model.annotations.NodeAnnotationLink

child() - Method in class ome.model.annotations.NodeAnnotationLink

child - Variable in class ome.model.annotations.ObjectiveAnnotationLink

CHILD - Static variable in class ome.model.annotations.ObjectiveAnnotationLink

child() - Method in class ome.model.annotations.ObjectiveAnnotationLink

child - Variable in class ome.model.annotations.OriginalFileAnnotationLink

CHILD - Static variable in class ome.model.annotations.OriginalFileAnnotationLink

child() - Method in class ome.model.annotations.OriginalFileAnnotationLink

child - Variable in class ome.model.annotations.PlaneInfoAnnotationLink

CHILD - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink

child() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

child - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

CHILD - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

child() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

child - Variable in class ome.model.annotations.PlateAnnotationLink

CHILD - Static variable in class ome.model.annotations.PlateAnnotationLink

child() - Method in class ome.model.annotations.PlateAnnotationLink

child - Variable in class ome.model.annotations.ProjectAnnotationLink

CHILD - Static variable in class ome.model.annotations.ProjectAnnotationLink

child() - Method in class ome.model.annotations.ProjectAnnotationLink

child - Variable in class ome.model.annotations.ReagentAnnotationLink

CHILD - Static variable in class ome.model.annotations.ReagentAnnotationLink

child() - Method in class ome.model.annotations.ReagentAnnotationLink

child - Variable in class ome.model.annotations.RoiAnnotationLink

CHILD - Static variable in class ome.model.annotations.RoiAnnotationLink

child() - Method in class ome.model.annotations.RoiAnnotationLink

child - Variable in class ome.model.annotations.ScreenAnnotationLink

CHILD - Static variable in class ome.model.annotations.ScreenAnnotationLink

child() - Method in class ome.model.annotations.ScreenAnnotationLink

child - Variable in class ome.model.annotations.SessionAnnotationLink

CHILD - Static variable in class ome.model.annotations.SessionAnnotationLink

child() - Method in class ome.model.annotations.SessionAnnotationLink

child - Variable in class ome.model.annotations.ShapeAnnotationLink

CHILD - Static variable in class ome.model.annotations.ShapeAnnotationLink

child() - Method in class ome.model.annotations.ShapeAnnotationLink

child - Variable in class ome.model.annotations.WellAnnotationLink

CHILD - Static variable in class ome.model.annotations.WellAnnotationLink

child() - Method in class ome.model.annotations.WellAnnotationLink

child - Variable in class ome.model.containers.DatasetImageLink

CHILD - Static variable in class ome.model.containers.DatasetImageLink

child() - Method in class ome.model.containers.DatasetImageLink

child - Variable in class ome.model.containers.FolderImageLink

CHILD - Static variable in class ome.model.containers.FolderImageLink

child() - Method in class ome.model.containers.FolderImageLink

child - Variable in class ome.model.containers.FolderRoiLink

CHILD - Static variable in class ome.model.containers.FolderRoiLink

child() - Method in class ome.model.containers.FolderRoiLink

child - Variable in class ome.model.containers.ProjectDatasetLink

CHILD - Static variable in class ome.model.containers.ProjectDatasetLink

child() - Method in class ome.model.containers.ProjectDatasetLink

child - Variable in class ome.model.core.PixelsOriginalFileMap

CHILD - Static variable in class ome.model.core.PixelsOriginalFileMap

child() - Method in class ome.model.core.PixelsOriginalFileMap

child - Variable in class ome.model.fs.FilesetJobLink

CHILD - Static variable in class ome.model.fs.FilesetJobLink

child() - Method in class ome.model.fs.FilesetJobLink

child - Variable in class ome.model.jobs.JobOriginalFileLink

CHILD - Static variable in class ome.model.jobs.JobOriginalFileLink

child() - Method in class ome.model.jobs.JobOriginalFileLink

child - Variable in class ome.model.meta.GroupExperimenterMap

CHILD - Static variable in class ome.model.meta.GroupExperimenterMap

child() - Method in class ome.model.meta.GroupExperimenterMap

child - Variable in class ome.model.meta.ShareMember

CHILD - Static variable in class ome.model.meta.ShareMember

child() - Method in class ome.model.meta.ShareMember

child - Variable in class ome.model.screen.ScreenPlateLink

CHILD - Static variable in class ome.model.screen.ScreenPlateLink

child() - Method in class ome.model.screen.ScreenPlateLink

child - Variable in class ome.model.screen.WellReagentLink

CHILD - Static variable in class ome.model.screen.WellReagentLink

child() - Method in class ome.model.screen.WellReagentLink

childFolders - Variable in class ome.model.containers.Folder

CHILDFOLDERS - Static variable in class ome.model.containers.Folder

CHOWNRESTRICTION - Static variable in class ome.model.internal.Permissions

CLASS - Static variable in class ome.parameters.Parameters

named parameter "class".

clearAnnotationLinks() - Method in class ome.model.acquisition.Detector

clears the set.

clearAnnotationLinks() - Method in class ome.model.acquisition.Dichroic

clears the set.

clearAnnotationLinks() - Method in class ome.model.acquisition.Filter

clears the set.

clearAnnotationLinks() - Method in class ome.model.acquisition.Instrument

clears the set.

clearAnnotationLinks() - Method in class ome.model.acquisition.LightPath

clears the set.

clearAnnotationLinks() - Method in class ome.model.acquisition.LightSource

clears the set.

clearAnnotationLinks() - Method in class ome.model.acquisition.Objective

clears the set.

clearAnnotationLinks() - Method in class ome.model.annotations.Annotation

clears the set.

clearAnnotationLinks() - Method in class ome.model.containers.Dataset

clears the set.

clearAnnotationLinks() - Method in class ome.model.containers.Folder

clears the set.

clearAnnotationLinks() - Method in class ome.model.containers.Project

clears the set.

clearAnnotationLinks() - Method in class ome.model.core.Channel

clears the set.

clearAnnotationLinks() - Method in class ome.model.core.Image

clears the set.

clearAnnotationLinks() - Method in class ome.model.core.OriginalFile

clears the set.

clearAnnotationLinks() - Method in class ome.model.core.PlaneInfo

clears the set.

clearAnnotationLinks() - Method in class ome.model.fs.Fileset

clears the set.

clearAnnotationLinks() - Method in interface ome.model.IAnnotated

clearAnnotationLinks() - Method in class ome.model.meta.Experimenter

clears the set.

clearAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup

clears the set.

clearAnnotationLinks() - Method in class ome.model.meta.Namespace

clears the set.

clearAnnotationLinks() - Method in class ome.model.meta.Node

clears the set.

clearAnnotationLinks() - Method in class ome.model.meta.Session

clears the set.

clearAnnotationLinks() - Method in class ome.model.roi.Roi

clears the set.

clearAnnotationLinks() - Method in class ome.model.roi.Shape

clears the set.

clearAnnotationLinks() - Method in class ome.model.screen.Plate

clears the set.

clearAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition

clears the set.

clearAnnotationLinks() - Method in class ome.model.screen.Reagent

clears the set.

clearAnnotationLinks() - Method in class ome.model.screen.Screen

clears the set.

clearAnnotationLinks() - Method in class ome.model.screen.Well

clears the set.

clearChannels() - Method in class ome.model.core.LogicalChannel

clears the set.

clearChannels() - Method in class ome.model.core.Pixels

clears the set.

clearChildFolders() - Method in class ome.model.containers.Folder

clears the set.

clearDatasetLinks() - Method in class ome.model.containers.Project

clears the set.

clearDatasetLinks() - Method in class ome.model.core.Image

clears the set.

clearDetector() - Method in class ome.model.acquisition.Instrument

clears the set.

clearDichroic() - Method in class ome.model.acquisition.Instrument

clears the set.

clearEmissionFilterLinks() - Method in class ome.model.acquisition.Filter

clears the set.

clearEmissionFilterLinks() - Method in class ome.model.acquisition.FilterSet

clears the set.

clearEmissionFilterLinks() - Method in class ome.model.acquisition.LightPath

clears the set.

clearEvents() - Method in class ome.model.meta.Session

clears the set.

clearExcitationFilterLinks() - Method in class ome.model.acquisition.Filter

clears the set.

clearExcitationFilterLinks() - Method in class ome.model.acquisition.FilterSet

clears the set.

clearExcitationFilterLinks() - Method in class ome.model.acquisition.LightPath

clears the set.

clearExperimenterGroupLinks() - Method in class ome.model.meta.Experimenter

clears the set.

clearExperimenterLinks() - Method in class ome.model.meta.ExperimenterGroup

clears the set.

clearFilesetEntries() - Method in class ome.model.core.OriginalFile

clears the set.

clearFilter() - Method in class ome.model.acquisition.Instrument

clears the set.

clearFiltered() - Method in class ome.model.internal.Details

all currently marked collections are released.

clearFilterSet() - Method in class ome.model.acquisition.Instrument

clears the set.

clearFolderLinks() - Method in class ome.model.core.Image

clears the set.

clearFolderLinks() - Method in class ome.model.roi.Roi

clears the set.

clearImageLinks() - Method in class ome.model.containers.Dataset

clears the set.

clearImageLinks() - Method in class ome.model.containers.Folder

clears the set.

clearImages() - Method in class ome.model.fs.Fileset

clears the set.

clearJobLinks() - Method in class ome.model.fs.Fileset

clears the set.

clearLightSource() - Method in class ome.model.acquisition.Instrument

clears the set.

clearLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation

clears the set.

clearLogs() - Method in class ome.model.meta.Event

clears the set.

clearMicrobeamManipulation() - Method in class ome.model.experiment.Experiment

clears the set.

clearObjective() - Method in class ome.model.acquisition.Instrument

clears the set.

clearOriginalFileLinks() - Method in class ome.model.core.Pixels

clears the set.

clearOriginalFileLinks() - Method in class ome.model.jobs.Job

clears the set.

clearOtf() - Method in class ome.model.acquisition.Instrument

clears the set.

clearPermissionsBit(String, long, int) - Method in interface ome.util.SqlAction

Sets the given permissions bit to 0.

clearPermissionsBit(String, long, int) - Method in class ome.util.SqlAction.Impl

clearPixels() - Method in class ome.model.core.Image

clears the set.

clearPixelsLinks() - Method in class ome.model.core.OriginalFile

clears the set.

clearPlaneInfo() - Method in class ome.model.core.Pixels

clears the set.

clearPlateAcquisitions() - Method in class ome.model.screen.Plate

clears the set.

clearPlateLinks() - Method in class ome.model.screen.Screen

clears the set.

clearProjections() - Method in class ome.model.display.RenderingDef

clears the set.

clearProjectLinks() - Method in class ome.model.containers.Dataset

clears the set.

clearReagentLinks() - Method in class ome.model.screen.Well

clears the set.

clearReagents() - Method in class ome.model.screen.Screen

clears the set.

clearRoiLinks() - Method in class ome.model.containers.Folder

clears the set.

clearRois() - Method in class ome.model.core.Image

clears the set.

clearScreenLinks() - Method in class ome.model.screen.Plate

clears the set.

clearSessions() - Method in class ome.model.meta.Node

clears the set.

clearSettings() - Method in class ome.model.core.Pixels

clears the set.

clearShapes() - Method in class ome.model.roi.Roi

clears the set.

clearSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding

clears the set.

clearThumbnails() - Method in class ome.model.core.Pixels

clears the set.

clearUsedFiles() - Method in class ome.model.fs.Fileset

clears the set.

clearWaveRendering() - Method in class ome.model.display.RenderingDef

clears the set.

clearWellLinks() - Method in class ome.model.screen.Reagent

clears the set.

clearWells() - Method in class ome.model.screen.Plate

clears the set.

clearWellSample() - Method in class ome.model.screen.PlateAcquisition

clears the set.

clearWellSamples() - Method in class ome.model.core.Image

clears the set.

clearWellSamples() - Method in class ome.model.screen.Well

clears the set.

clientPath - Variable in class ome.model.fs.FilesetEntry

CLIENTPATH - Static variable in class ome.model.fs.FilesetEntry

close() - Method in class ome.services.fulltext.ConfiguredAnalyzer

closed - Variable in class ome.model.meta.Session

CLOSED - Static variable in class ome.model.meta.Session

closeNode(String) - Method in interface ome.util.SqlAction

closeNode(String) - Method in class ome.util.SqlAction.Impl

closeNodeSessions(String) - Method in interface ome.util.SqlAction

closeNodeSessions(String) - Method in class ome.util.SqlAction.Impl

closeQuietly(Closeable) - Static method in class ome.util.Utils

closeSessions(String) - Method in class ome.util.actions.PostgresSqlAction

closeSessions(String) - Method in interface ome.util.SqlAction

co2percent - Variable in class ome.model.acquisition.ImagingEnvironment

CO2PERCENT - Static variable in class ome.model.acquisition.ImagingEnvironment

CodomainMapContext - Class in ome.model.display

These filter definitions are used by the security system to eliminate non-readable objects from queries.

CodomainMapContext() - Constructor for class ome.model.display.CodomainMapContext

CodomainMapContext(Long) - Constructor for class ome.model.display.CodomainMapContext

CodomainMapContext(Long, boolean) - Constructor for class ome.model.display.CodomainMapContext

Main constructor.

CodomainMapContext(ChannelBinding) - Constructor for class ome.model.display.CodomainMapContext

CodomainMapContext.Details - Class in ome.model.display

coefficient - Variable in class ome.model.display.ChannelBinding

COEFFICIENT - Static variable in class ome.model.display.ChannelBinding

COLLAB_READLINK - Static variable in class ome.model.internal.Permissions

an immutable Permissions instance with read and write permissions for group members.

COLLAB_READONLY - Static variable in class ome.model.internal.Permissions

an immutable Permissions instance with permissions for group members to read other members' data.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Detector

takes a CBlock and calls the block once for each ome.model.annotations.DetectorAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Dichroic

takes a CBlock and calls the block once for each ome.model.annotations.DichroicAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Filter

takes a CBlock and calls the block once for each ome.model.annotations.FilterAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Instrument

takes a CBlock and calls the block once for each ome.model.annotations.InstrumentAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.LightPath

takes a CBlock and calls the block once for each ome.model.annotations.LightPathAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.LightSource

takes a CBlock and calls the block once for each ome.model.annotations.LightSourceAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Objective

takes a CBlock and calls the block once for each ome.model.annotations.ObjectiveAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.annotations.Annotation

takes a CBlock and calls the block once for each ome.model.annotations.AnnotationAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Dataset

takes a CBlock and calls the block once for each ome.model.annotations.DatasetAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Folder

takes a CBlock and calls the block once for each ome.model.annotations.FolderAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Project

takes a CBlock and calls the block once for each ome.model.annotations.ProjectAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.Channel

takes a CBlock and calls the block once for each ome.model.annotations.ChannelAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.Image

takes a CBlock and calls the block once for each ome.model.annotations.ImageAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.OriginalFile

takes a CBlock and calls the block once for each ome.model.annotations.OriginalFileAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.PlaneInfo

takes a CBlock and calls the block once for each ome.model.annotations.PlaneInfoAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.fs.Fileset

takes a CBlock and calls the block once for each ome.model.annotations.FilesetAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in interface ome.model.IAnnotated

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Experimenter

takes a CBlock and calls the block once for each ome.model.annotations.ExperimenterAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup

takes a CBlock and calls the block once for each ome.model.annotations.ExperimenterGroupAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Namespace

takes a CBlock and calls the block once for each ome.model.annotations.NamespaceAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Node

takes a CBlock and calls the block once for each ome.model.annotations.NodeAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Session

takes a CBlock and calls the block once for each ome.model.annotations.SessionAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.roi.Roi

takes a CBlock and calls the block once for each ome.model.annotations.RoiAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.roi.Shape

takes a CBlock and calls the block once for each ome.model.annotations.ShapeAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Plate

takes a CBlock and calls the block once for each ome.model.annotations.PlateAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition

takes a CBlock and calls the block once for each ome.model.annotations.PlateAcquisitionAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Reagent

takes a CBlock and calls the block once for each ome.model.annotations.ReagentAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Screen

takes a CBlock and calls the block once for each ome.model.annotations.ScreenAnnotationLink while collecting the results.

collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Well

takes a CBlock and calls the block once for each ome.model.annotations.WellAnnotationLink while collecting the results.

collectChannels(CBlock<E>) - Method in class ome.model.core.LogicalChannel

takes a CBlock and calls the block once for each ome.model.core.Channel while collecting the results.

collectChannels(CBlock<E>) - Method in class ome.model.core.Pixels

takes a CBlock and calls the block once for each ome.model.core.Channel while collecting the results.

collectChildFolders(CBlock<E>) - Method in class ome.model.containers.Folder

takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.

collectDatasetLinks(CBlock<E>) - Method in class ome.model.containers.Project

takes a CBlock and calls the block once for each ome.model.containers.ProjectDatasetLink while collecting the results.

collectDatasetLinks(CBlock<E>) - Method in class ome.model.core.Image

takes a CBlock and calls the block once for each ome.model.containers.DatasetImageLink while collecting the results.

collectDetector(CBlock<E>) - Method in class ome.model.acquisition.Instrument

takes a CBlock and calls the block once for each ome.model.acquisition.Detector while collecting the results.

collectDichroic(CBlock<E>) - Method in class ome.model.acquisition.Instrument

takes a CBlock and calls the block once for each ome.model.acquisition.Dichroic while collecting the results.

CollectedACLViolations - Exception in ome.conditions.acl

User has attempted an action which is not permitted by the Permissions of a given instance.

CollectedACLViolations(String) - Constructor for exception ome.conditions.acl.CollectedACLViolations

collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.Filter

takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetEmissionFilterLink while collecting the results.

collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.FilterSet

takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetEmissionFilterLink while collecting the results.

collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.LightPath

takes a CBlock and calls the block once for each ome.model.acquisition.LightPathEmissionFilterLink while collecting the results.

collectEvents(CBlock<E>) - Method in class ome.model.meta.Session

takes a CBlock and calls the block once for each ome.model.meta.Event while collecting the results.

collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.Filter

takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetExcitationFilterLink while collecting the results.

collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.FilterSet

takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetExcitationFilterLink while collecting the results.

collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.LightPath

takes a CBlock and calls the block once for each ome.model.acquisition.LightPathExcitationFilterLink while collecting the results.

collectFilesetEntries(CBlock<E>) - Method in class ome.model.core.OriginalFile

takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while collecting the results.

collectFilter(CBlock<E>) - Method in class ome.model.acquisition.Instrument

takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.

collectFilterSet(CBlock<E>) - Method in class ome.model.acquisition.Instrument

takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.

collectFolderLinks(CBlock<E>) - Method in class ome.model.core.Image

takes a CBlock and calls the block once for each ome.model.containers.FolderImageLink while collecting the results.

collectFolderLinks(CBlock<E>) - Method in class ome.model.roi.Roi

takes a CBlock and calls the block once for each ome.model.containers.FolderRoiLink while collecting the results.

collectGroupExperimenterMap(CBlock<E>) - Method in class ome.model.meta.Experimenter

takes a CBlock and calls the block once for each ome.model.meta.GroupExperimenterMap while collecting the results.

collectGroupExperimenterMap(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup

takes a CBlock and calls the block once for each ome.model.meta.GroupExperimenterMap while collecting the results.

collectImageLinks(CBlock<E>) - Method in class ome.model.containers.Dataset

takes a CBlock and calls the block once for each ome.model.containers.DatasetImageLink while collecting the results.

collectImageLinks(CBlock<E>) - Method in class ome.model.containers.Folder

takes a CBlock and calls the block once for each ome.model.containers.FolderImageLink while collecting the results.

collectImages(CBlock<E>) - Method in class ome.model.fs.Fileset

takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.

collectJobLinks(CBlock<E>) - Method in class ome.model.fs.Fileset

takes a CBlock and calls the block once for each ome.model.fs.FilesetJobLink while collecting the results.

collectLightSource(CBlock<E>) - Method in class ome.model.acquisition.Instrument

takes a CBlock and calls the block once for each ome.model.acquisition.LightSource while collecting the results.

collectLightSourceSettings(CBlock<E>) - Method in class ome.model.experiment.MicrobeamManipulation

takes a CBlock and calls the block once for each ome.model.acquisition.LightSettings while collecting the results.

collectLogs(CBlock<E>) - Method in class ome.model.meta.Event

takes a CBlock and calls the block once for each ome.model.meta.EventLog while collecting the results.

collectMicrobeamManipulation(CBlock<E>) - Method in class ome.model.experiment.Experiment

takes a CBlock and calls the block once for each ome.model.experiment.MicrobeamManipulation while collecting the results.

collectObjective(CBlock<E>) - Method in class ome.model.acquisition.Instrument

takes a CBlock and calls the block once for each ome.model.acquisition.Objective while collecting the results.

collectOriginalFileLinks(CBlock<E>) - Method in class ome.model.jobs.Job

takes a CBlock and calls the block once for each ome.model.jobs.JobOriginalFileLink while collecting the results.

collectOtf(CBlock<E>) - Method in class ome.model.acquisition.Instrument

takes a CBlock and calls the block once for each ome.model.acquisition.OTF while collecting the results.

collectPixels(CBlock<E>) - Method in class ome.model.core.Image

takes a CBlock and calls the block once for each ome.model.core.Pixels while collecting the results.

collectPixelsFileMaps(CBlock<E>) - Method in class ome.model.core.OriginalFile

takes a CBlock and calls the block once for each ome.model.core.PixelsOriginalFileMap while collecting the results.

collectPixelsFileMaps(CBlock<E>) - Method in class ome.model.core.Pixels

takes a CBlock and calls the block once for each ome.model.core.PixelsOriginalFileMap while collecting the results.

collectPlaneInfo(CBlock<E>) - Method in class ome.model.core.Pixels

takes a CBlock and calls the block once for each ome.model.core.PlaneInfo while collecting the results.

collectPlateAcquisitions(CBlock<E>) - Method in class ome.model.screen.Plate

takes a CBlock and calls the block once for each ome.model.screen.PlateAcquisition while collecting the results.

collectPlateLinks(CBlock<E>) - Method in class ome.model.screen.Screen

takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results.

collectProjections(CBlock<E>) - Method in class ome.model.display.RenderingDef

takes a CBlock and calls the block once for each ome.model.display.ProjectionDef while collecting the results.

collectProjectLinks(CBlock<E>) - Method in class ome.model.containers.Dataset

takes a CBlock and calls the block once for each ome.model.containers.ProjectDatasetLink while collecting the results.

collectReagentLinks(CBlock<E>) - Method in class ome.model.screen.Well

takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while collecting the results.

collectReagents(CBlock<E>) - Method in class ome.model.screen.Screen

takes a CBlock and calls the block once for each ome.model.screen.Reagent while collecting the results.

collectRoiLinks(CBlock<E>) - Method in class ome.model.containers.Folder

takes a CBlock and calls the block once for each ome.model.containers.FolderRoiLink while collecting the results.

collectRois(CBlock<E>) - Method in class ome.model.core.Image

takes a CBlock and calls the block once for each ome.model.roi.Roi while collecting the results.

collectScreenLinks(CBlock<E>) - Method in class ome.model.screen.Plate

takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results.

collectSessions(CBlock<E>) - Method in class ome.model.meta.Node

takes a CBlock and calls the block once for each ome.model.meta.Session while collecting the results.

collectSettings(CBlock<E>) - Method in class ome.model.core.Pixels

takes a CBlock and calls the block once for each ome.model.display.RenderingDef while collecting the results.

collectShapes(CBlock<E>) - Method in class ome.model.roi.Roi

takes a CBlock and calls the block once for each ome.model.roi.Shape while collecting the results.

collectSpatialDomainEnhancement(CBlock<E>) - Method in class ome.model.display.ChannelBinding

takes a CBlock and calls the block once for each ome.model.display.CodomainMapContext while collecting the results.

collectThumbnails(CBlock<E>) - Method in class ome.model.core.Pixels

takes a CBlock and calls the block once for each ome.model.display.Thumbnail while collecting the results.

collectUsedFiles(CBlock<E>) - Method in class ome.model.fs.Fileset

takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while collecting the results.

collectWaveRendering(CBlock<E>) - Method in class ome.model.display.RenderingDef

takes a CBlock and calls the block once for each ome.model.display.ChannelBinding while collecting the results.

collectWellLinks(CBlock<E>) - Method in class ome.model.screen.Reagent

takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while collecting the results.

collectWells(CBlock<E>) - Method in class ome.model.screen.Plate

takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.

collectWellSample(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition

takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.

collectWellSamples(CBlock<E>) - Method in class ome.model.core.Image

takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.

collectWellSamples(CBlock<E>) - Method in class ome.model.screen.Well

takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.

column - Variable in class ome.model.screen.Well

COLUMN - Static variable in class ome.model.screen.Well

columnNamingConvention - Variable in class ome.model.screen.Plate

COLUMNNAMINGCONVENTION - Static variable in class ome.model.screen.Plate

columns - Variable in class ome.model.screen.Plate

COLUMNS - Static variable in class ome.model.screen.Plate

CommentAnnotation - Class in ome.model.annotations

CommentAnnotation() - Constructor for class ome.model.annotations.CommentAnnotation

CommentAnnotation(Long) - Constructor for class ome.model.annotations.CommentAnnotation

CommentAnnotation(Long, boolean) - Constructor for class ome.model.annotations.CommentAnnotation

Main constructor.

compression - Variable in class ome.model.display.RenderingDef

COMPRESSION - Static variable in class ome.model.display.RenderingDef

ConcurrencyException - Exception in ome.conditions

Error due to simultaneous access of some resource.

ConcurrencyException(String, long) - Constructor for exception ome.conditions.ConcurrencyException

config - Variable in class ome.model.meta.Experimenter

CONFIG - Static variable in class ome.model.meta.Experimenter

config - Variable in class ome.model.meta.ExperimenterGroup

CONFIG - Static variable in class ome.model.meta.ExperimenterGroup

CONFIG_KEY - Static variable in class ome.util.PixelData

configure(Type, Properties, Dialect) - Method in class ome.util.TableIdGenerator

ConfiguredAnalyzer - Class in ome.services.fulltext

A full-text search analyzer usable by the OMERO model.

ConfiguredAnalyzer() - Constructor for class ome.services.fulltext.ConfiguredAnalyzer

Construct an analyzer wrapping the same class as previously passed to ConfiguredAnalyzer.ConfiguredAnalyzer(Class).

ConfiguredAnalyzer(Class<? extends Analyzer>) - Constructor for class ome.services.fulltext.ConfiguredAnalyzer

Construct an analyzer wrapping the given class.

configValue(String) - Method in interface ome.util.SqlAction

configValue(String) - Method in class ome.util.SqlAction.Impl

conn - Variable in class ome.model.meta.Node

CONN - Static variable in class ome.model.meta.Node

constant - Variable in class ome.model.display.PlaneSlicingContext

CONSTANT - Static variable in class ome.model.display.PlaneSlicingContext

containingEvent - Variable in class ome.model.meta.Event

CONTAININGEVENT - Static variable in class ome.model.meta.Event

contextAt(int) - Method in class ome.model.internal.Details

ContextFilter - Class in ome.util

modified (hierarchical) visitor pattern.

ContextFilter() - Constructor for class ome.util.ContextFilter

contexts - Variable in class ome.model.internal.Details

contrastMethod - Variable in class ome.model.core.LogicalChannel

CONTRASTMETHOD - Static variable in class ome.model.core.LogicalChannel

ContrastMethod - Class in ome.model.enums

ContrastMethod() - Constructor for class ome.model.enums.ContrastMethod

ContrastMethod(Long) - Constructor for class ome.model.enums.ContrastMethod

ContrastMethod(Long, boolean) - Constructor for class ome.model.enums.ContrastMethod

Main constructor.

ContrastMethod(String) - Constructor for class ome.model.enums.ContrastMethod

ContrastMethod.Details - Class in ome.model.enums

ContrastStretchingContext - Class in ome.model.display

ContrastStretchingContext() - Constructor for class ome.model.display.ContrastStretchingContext

ContrastStretchingContext(Long) - Constructor for class ome.model.display.ContrastStretchingContext

ContrastStretchingContext(Long, boolean) - Constructor for class ome.model.display.ContrastStretchingContext

Main constructor.

ContrastStretchingContext(Integer, Integer, Integer, Integer) - Constructor for class ome.model.display.ContrastStretchingContext

Conversion - Class in ome.model.units

Base-functor like object which can be used for preparing complex equations for converting from one unit to another.

Conversion(Conversion...) - Constructor for class ome.model.units.Conversion

Primary constructor for a Conversion object.

Conversion.Add - Class in ome.model.units

Sums all Conversion instances via BigDecimal.add(BigDecimal).

Conversion.Int - Class in ome.model.units

Simply is a representation of a possibly large integer.

Conversion.Mul - Class in ome.model.units

Multiplies all Conversion instances via BigDecimal.multiply(BigDecimal).

Conversion.Pow - Class in ome.model.units

Exponentiates two Conversion instances via BigDecimal.pow(int).

Conversion.Rat - Class in ome.model.units

Divides two Conversion instances via BigDecimal.divide(BigDecimal, MathContext).

Conversion.Sym - Class in ome.model.units

Simply represents the variable of the source unit so that Conversion.Sym.convert(double) just returns the value passed in.

conversions - Variable in class ome.model.units.Conversion

Conversions, if any, which are passed into the constructor of this instance.

convert(double) - Method in class ome.model.units.Conversion.Add

convert(double) - Method in class ome.model.units.Conversion

Primary operator for Conversion instances.

convert(double) - Method in class ome.model.units.Conversion.Int

Returns a BigDecimal representation of this int.

convert(double) - Method in class ome.model.units.Conversion.Mul

convert(double) - Method in class ome.model.units.Conversion.Pow

convert(double) - Method in class ome.model.units.Conversion.Rat

convert(double) - Method in class ome.model.units.Conversion.Sym

convertElectricPotential(ElectricPotential) - Static method in class ome.model.units.ElectricPotential

FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.

convertElectricPotential(ElectricPotential, Unit<ElectricPotential>) - Static method in class ome.model.units.ElectricPotential

convertElectricPotential(ElectricPotential, String) - Static method in class ome.model.units.ElectricPotential

convertFrequency(Frequency) - Static method in class ome.model.units.Frequency

FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.

convertFrequency(Frequency, Unit<Frequency>) - Static method in class ome.model.units.Frequency

convertFrequency(Frequency, String) - Static method in class ome.model.units.Frequency

convertLength(Length) - Static method in class ome.model.units.Length

FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.

convertLength(Length, Unit<Length>) - Static method in class ome.model.units.Length

convertLength(Length, String) - Static method in class ome.model.units.Length

convertPower(Power) - Static method in class ome.model.units.Power

FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.

convertPower(Power, Unit<Power>) - Static method in class ome.model.units.Power

convertPower(Power, String) - Static method in class ome.model.units.Power

convertPressure(Pressure) - Static method in class ome.model.units.Pressure

FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.

convertPressure(Pressure, Unit<Pressure>) - Static method in class ome.model.units.Pressure

convertPressure(Pressure, String) - Static method in class ome.model.units.Pressure

convertTemperature(Temperature) - Static method in class ome.model.units.Temperature

FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.

convertTemperature(Temperature, Unit<Temperature>) - Static method in class ome.model.units.Temperature

convertTemperature(Temperature, String) - Static method in class ome.model.units.Temperature

convertTime(Time) - Static method in class ome.model.units.Time

FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.

convertTime(Time, Unit<Time>) - Static method in class ome.model.units.Time

convertTime(Time, String) - Static method in class ome.model.units.Time

copy() - Method in class ome.model.internal.Details

copy(Details) - Method in class ome.model.internal.Details

Method which takes all field values from the given Details instance and copies them into the current instance.

copy(T) - Method in class ome.util.ShallowCopy

copyExtendedRestrictions() - Method in class ome.model.internal.Permissions

Produce a copy of restrictions for use elsewhere.

copyObject(Filterable, ModelMapper) - Method in interface ome.model.ModelBased

copyRestrictions() - Method in class ome.model.internal.Permissions

Deprecated.

copyRestrictions(String[]) - Method in class ome.model.internal.Permissions

Safely copy the source array.

copyRestrictions(boolean[], String[]) - Method in class ome.model.internal.Permissions

Deprecated.

copyRestrictions(int, Set<String>) - Method in class ome.model.internal.Permissions

Copy restrictions based on the integer returned by BasicACLVoter.

copyWhereUnset(Details, Details) - Method in class ome.model.internal.Details

For any field of this which is null (and is NOT null on mask -- assuming mask is not null), copy the same value from copyFrom into this object.

correction - Variable in class ome.model.acquisition.Objective

CORRECTION - Static variable in class ome.model.acquisition.Objective

Correction - Class in ome.model.enums

Correction() - Constructor for class ome.model.enums.Correction

Correction(Long) - Constructor for class ome.model.enums.Correction

Correction(Long, boolean) - Constructor for class ome.model.enums.Correction

Main constructor.

Correction(String) - Constructor for class ome.model.enums.Correction

Correction.Details - Class in ome.model.enums

correctionCollar - Variable in class ome.model.acquisition.ObjectiveSettings

CORRECTIONCOLLAR - Static variable in class ome.model.acquisition.ObjectiveSettings

CountCollectionPersister - Class in ome.util

CollectionPersister which knows how to handle the count views generated by dsl/resources/ome/dsl/views.dm.

CountCollectionPersister(Collection, CollectionRegionAccessStrategy, Configuration, SessionFactoryImplementor) - Constructor for class ome.util.CountCollectionPersister

Counter - Class in ome.util

A simple integral counter that can be incremented.

Counter() - Constructor for class ome.util.Counter

Create a new counter starting at zero.

countFormat(String) - Method in class ome.util.actions.PostgresSqlAction

countFormat(String) - Method in interface ome.util.SqlAction

create() - Static method in class ome.model.internal.Details

Call Details.create(Object[]) with null.

create(Object[]) - Static method in class ome.model.internal.Details

Factory method which returns a Details implementation for passing in API calls, but cannot be stored within an IObject instance.

createBufferedImage(int[], int, int) - Static method in class ome.util.ImageUtil

Creates a buffered image from a rendering engine RGB buffer without data copying.

createIdsTempTable(Collection<Long>) - Method in interface ome.util.SqlAction

Creates a temporary table filled with the given ids and returns its name.

createIdsTempTable(Collection<Long>) - Method in class ome.util.SqlAction.Impl

createInsertTrigger(String, String, String) - Method in interface ome.util.SqlAction

Creates an insert trigger of the given name, for the given table, with the given procedure.

createInsertTrigger(String, String, String) - Method in class ome.util.SqlAction.Impl

createSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction

createSavepoint(String) - Method in interface ome.util.SqlAction

CREATIONEVENT - Static variable in class ome.model.internal.Details

ctime - Variable in class ome.model.core.OriginalFile

CTIME - Static variable in class ome.model.core.OriginalFile

currentContext() - Method in class ome.util.ContextFilter

currentPatch - Variable in class ome.model.meta.DBPatch

CURRENTPATCH - Static variable in class ome.model.meta.DBPatch

currentUserNames() - Method in class ome.util.actions.PostgresSqlAction

currentUserNames() - Method in interface ome.util.SqlAction

currentVersion - Variable in class ome.model.meta.DBPatch

CURRENTVERSION - Static variable in class ome.model.meta.DBPatch

currValue(String) - Method in class ome.util.actions.PostgresSqlAction

currValue(String) - Method in interface ome.util.SqlAction

cutIn - Variable in class ome.model.acquisition.TransmittanceRange

CUTIN - Static variable in class ome.model.acquisition.TransmittanceRange

cutInTolerance - Variable in class ome.model.acquisition.TransmittanceRange

CUTINTOLERANCE - Static variable in class ome.model.acquisition.TransmittanceRange

cutOut - Variable in class ome.model.acquisition.TransmittanceRange

CUTOUT - Static variable in class ome.model.acquisition.TransmittanceRange

cutOutTolerance - Variable in class ome.model.acquisition.TransmittanceRange

CUTOUTTOLERANCE - Static variable in class ome.model.acquisition.TransmittanceRange

D

d - Variable in class ome.model.roi.Path

Deprecated.

D - Static variable in class ome.model.roi.Path

Deprecated.

data - Variable in class ome.model.meta.Share

DATA - Static variable in class ome.model.meta.Share

data - Variable in class ome.util.PixelData

The pixels data backing buffer.

DatabaseBusyException - Exception in ome.conditions

No connections are currently available for the database.

DatabaseBusyException(String, long) - Constructor for exception ome.conditions.DatabaseBusyException

Dataset - Class in ome.model.containers

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Dataset() - Constructor for class ome.model.containers.Dataset

Dataset(Long) - Constructor for class ome.model.containers.Dataset

Dataset(Long, boolean) - Constructor for class ome.model.containers.Dataset

Main constructor.

Dataset(String) - Constructor for class ome.model.containers.Dataset

Dataset.Details - Class in ome.model.containers

DatasetAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

DatasetAnnotationLink() - Constructor for class ome.model.annotations.DatasetAnnotationLink

DatasetAnnotationLink(Long) - Constructor for class ome.model.annotations.DatasetAnnotationLink

DatasetAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DatasetAnnotationLink

Main constructor.

DatasetAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DatasetAnnotationLink

DatasetAnnotationLink.Details - Class in ome.model.annotations

DatasetImageLink - Class in ome.model.containers

These filter definitions are used by the security system to eliminate non-readable objects from queries.

DatasetImageLink() - Constructor for class ome.model.containers.DatasetImageLink

DatasetImageLink(Long) - Constructor for class ome.model.containers.DatasetImageLink

DatasetImageLink(Long, boolean) - Constructor for class ome.model.containers.DatasetImageLink

Main constructor.

DatasetImageLink(IObject, IObject) - Constructor for class ome.model.containers.DatasetImageLink

DatasetImageLink.Details - Class in ome.model.containers

datasetLinks - Variable in class ome.model.containers.Project

DATASETLINKS - Static variable in class ome.model.containers.Project

datasetLinks - Variable in class ome.model.core.Image

DATASETLINKS - Static variable in class ome.model.core.Image

DATASETLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Project

DATASETLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image

DBPatch - Class in ome.model.meta

DBPatch() - Constructor for class ome.model.meta.DBPatch

DBPatch(Long) - Constructor for class ome.model.meta.DBPatch

DBPatch(Long, boolean) - Constructor for class ome.model.meta.DBPatch

Main constructor.

DBPatch(String, Integer, String, Integer) - Constructor for class ome.model.meta.DBPatch

DBPatch.Details - Class in ome.model.meta

dbUuid() - Method in class ome.util.actions.PostgresSqlAction

dbUuid() - Method in interface ome.util.SqlAction

dbVersion() - Method in class ome.util.actions.PostgresSqlAction

dbVersion() - Method in interface ome.util.SqlAction

deepCopy(Object) - Method in class ome.model.units.GenericEnumType

defaultEventType - Variable in class ome.model.meta.Session

DEFAULTEVENTTYPE - Static variable in class ome.model.meta.Session

defaultSample - Variable in class ome.model.screen.Plate

DEFAULTSAMPLE - Static variable in class ome.model.screen.Plate

defaultT - Variable in class ome.model.display.RenderingDef

DEFAULTT - Static variable in class ome.model.display.RenderingDef

defaultZ - Variable in class ome.model.display.RenderingDef

DEFAULTZ - Static variable in class ome.model.display.RenderingDef

deferConstraints() - Method in class ome.util.actions.PostgresSqlAction

deferConstraints() - Method in interface ome.util.SqlAction

delConfigValue(String) - Method in interface ome.util.SqlAction

delConfigValue(String) - Method in class ome.util.SqlAction.Impl

delCurrentEventLog(String) - Method in class ome.util.actions.PostgresSqlAction

delCurrentEventLog(String) - Method in interface ome.util.SqlAction

delCurrentEventLog(String) - Method in class ome.util.SqlAction.Impl

deleteCurrentAdminPrivileges() - Method in interface ome.util.SqlAction

Delete the current light administrator privileges for the current transaction.

deleteCurrentAdminPrivileges() - Method in class ome.util.SqlAction.Impl

DeleteLog() - Constructor for class ome.util.SqlAction.DeleteLog

deleteOldAdminPrivileges(Collection<Long>) - Method in interface ome.util.SqlAction

Delete the current light administrator privileges for the given transactions.

deleteOldAdminPrivileges(Collection<Long>) - Method in class ome.util.SqlAction.Impl

deleteRepoDeleteLogs(SqlAction.DeleteLog) - Method in interface ome.util.SqlAction

Delete all SqlAction.DeleteLog entries which match all of the non-null fields provided in the template.

deleteRepoDeleteLogs(SqlAction.DeleteLog) - Method in class ome.util.SqlAction.Impl

DELETERESTRICTION - Static variable in class ome.model.internal.Permissions

deleteRows(PersistentCollection, Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister

deltaT - Variable in class ome.model.core.PlaneInfo

DELTAT - Static variable in class ome.model.core.PlaneInfo

description - Variable in class ome.model.annotations.Annotation

DESCRIPTION - Static variable in class ome.model.annotations.Annotation

description - Variable in class ome.model.containers.Dataset

DESCRIPTION - Static variable in class ome.model.containers.Dataset

description - Variable in class ome.model.containers.Folder

DESCRIPTION - Static variable in class ome.model.containers.Folder

description - Variable in class ome.model.containers.Project

DESCRIPTION - Static variable in class ome.model.containers.Project

description - Variable in class ome.model.core.Image

DESCRIPTION - Static variable in class ome.model.core.Image

description - Variable in class ome.model.experiment.Experiment

DESCRIPTION - Static variable in class ome.model.experiment.Experiment

description - Variable in class ome.model.experiment.MicrobeamManipulation

DESCRIPTION - Static variable in class ome.model.experiment.MicrobeamManipulation

description - Variable in class ome.model.jobs.ScriptJob

DESCRIPTION - Static variable in class ome.model.jobs.ScriptJob

description - Variable in class ome.model.meta.ExperimenterGroup

DESCRIPTION - Static variable in class ome.model.meta.ExperimenterGroup

description - Variable in class ome.model.meta.Namespace

DESCRIPTION - Static variable in class ome.model.meta.Namespace

description - Variable in class ome.model.roi.Roi

DESCRIPTION - Static variable in class ome.model.roi.Roi

description - Variable in class ome.model.screen.Plate

DESCRIPTION - Static variable in class ome.model.screen.Plate

description - Variable in class ome.model.screen.PlateAcquisition

DESCRIPTION - Static variable in class ome.model.screen.PlateAcquisition

description - Variable in class ome.model.screen.Reagent

DESCRIPTION - Static variable in class ome.model.screen.Reagent

description - Variable in class ome.model.screen.Screen

DESCRIPTION - Static variable in class ome.model.screen.Screen

details - Variable in class ome.model.acquisition.Detector

DETAILS - Static variable in class ome.model.acquisition.Detector

Details() - Constructor for class ome.model.acquisition.Detector.Details

Details(Object[]) - Constructor for class ome.model.acquisition.Detector.Details

details - Variable in class ome.model.acquisition.DetectorSettings

DETAILS - Static variable in class ome.model.acquisition.DetectorSettings

Details() - Constructor for class ome.model.acquisition.DetectorSettings.Details

Details(Object[]) - Constructor for class ome.model.acquisition.DetectorSettings.Details

details - Variable in class ome.model.acquisition.Dichroic

DETAILS - Static variable in class ome.model.acquisition.Dichroic

Details() - Constructor for class ome.model.acquisition.Dichroic.Details

Details(Object[]) - Constructor for class ome.model.acquisition.Dichroic.Details

details - Variable in class ome.model.acquisition.Filter

DETAILS - Static variable in class ome.model.acquisition.Filter

Details() - Constructor for class ome.model.acquisition.Filter.Details

Details(Object[]) - Constructor for class ome.model.acquisition.Filter.Details

details - Variable in class ome.model.acquisition.FilterSet

DETAILS - Static variable in class ome.model.acquisition.FilterSet

Details() - Constructor for class ome.model.acquisition.FilterSet.Details

Details(Object[]) - Constructor for class ome.model.acquisition.FilterSet.Details

details - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink

DETAILS - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink

Details() - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink.Details

Details(Object[]) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink.Details

details - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink

DETAILS - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink

Details() - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink.Details

Details(Object[]) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink.Details

details - Variable in class ome.model.acquisition.ImagingEnvironment

DETAILS - Static variable in class ome.model.acquisition.ImagingEnvironment

Details() - Constructor for class ome.model.acquisition.ImagingEnvironment.Details

Details(Object[]) - Constructor for class ome.model.acquisition.ImagingEnvironment.Details

details - Variable in class ome.model.acquisition.Instrument

DETAILS - Static variable in class ome.model.acquisition.Instrument

Details() - Constructor for class ome.model.acquisition.Instrument.Details

Details(Object[]) - Constructor for class ome.model.acquisition.Instrument.Details

details - Variable in class ome.model.acquisition.LightPath

DETAILS - Static variable in class ome.model.acquisition.LightPath

Details() - Constructor for class ome.model.acquisition.LightPath.Details

Details(Object[]) - Constructor for class ome.model.acquisition.LightPath.Details

details - Variable in class ome.model.acquisition.LightPathEmissionFilterLink

DETAILS - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink

Details() - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink.Details

Details(Object[]) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink.Details

details - Variable in class ome.model.acquisition.LightPathExcitationFilterLink

DETAILS - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink

Details() - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink.Details

Details(Object[]) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink.Details

details - Variable in class ome.model.acquisition.LightSettings

DETAILS - Static variable in class ome.model.acquisition.LightSettings

Details() - Constructor for class ome.model.acquisition.LightSettings.Details

Details(Object[]) - Constructor for class ome.model.acquisition.LightSettings.Details

details - Variable in class ome.model.acquisition.LightSource

DETAILS - Static variable in class ome.model.acquisition.LightSource

Details() - Constructor for class ome.model.acquisition.LightSource.Details

Details(Object[]) - Constructor for class ome.model.acquisition.LightSource.Details

details - Variable in class ome.model.acquisition.Microscope

DETAILS - Static variable in class ome.model.acquisition.Microscope

Details() - Constructor for class ome.model.acquisition.Microscope.Details

Details(Object[]) - Constructor for class ome.model.acquisition.Microscope.Details

details - Variable in class ome.model.acquisition.Objective

DETAILS - Static variable in class ome.model.acquisition.Objective

Details() - Constructor for class ome.model.acquisition.Objective.Details

Details(Object[]) - Constructor for class ome.model.acquisition.Objective.Details

details - Variable in class ome.model.acquisition.ObjectiveSettings

DETAILS - Static variable in class ome.model.acquisition.ObjectiveSettings

Details() - Constructor for class ome.model.acquisition.ObjectiveSettings.Details

Details(Object[]) - Constructor for class ome.model.acquisition.ObjectiveSettings.Details

details - Variable in class ome.model.acquisition.OTF

DETAILS - Static variable in class ome.model.acquisition.OTF

Details() - Constructor for class ome.model.acquisition.OTF.Details

Details(Object[]) - Constructor for class ome.model.acquisition.OTF.Details

details - Variable in class ome.model.acquisition.StageLabel

DETAILS - Static variable in class ome.model.acquisition.StageLabel

Details() - Constructor for class ome.model.acquisition.StageLabel.Details

Details(Object[]) - Constructor for class ome.model.acquisition.StageLabel.Details

details - Variable in class ome.model.acquisition.TransmittanceRange

DETAILS - Static variable in class ome.model.acquisition.TransmittanceRange

Details() - Constructor for class ome.model.acquisition.TransmittanceRange.Details

Details(Object[]) - Constructor for class ome.model.acquisition.TransmittanceRange.Details

details - Variable in class ome.model.annotations.Annotation

DETAILS - Static variable in class ome.model.annotations.Annotation

Details() - Constructor for class ome.model.annotations.Annotation.Details

Details(Object[]) - Constructor for class ome.model.annotations.Annotation.Details

details - Variable in class ome.model.annotations.AnnotationAnnotationLink

DETAILS - Static variable in class ome.model.annotations.AnnotationAnnotationLink

Details() - Constructor for class ome.model.annotations.AnnotationAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.AnnotationAnnotationLink.Details

details - Variable in class ome.model.annotations.ChannelAnnotationLink

DETAILS - Static variable in class ome.model.annotations.ChannelAnnotationLink

Details() - Constructor for class ome.model.annotations.ChannelAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.ChannelAnnotationLink.Details

details - Variable in class ome.model.annotations.DatasetAnnotationLink

DETAILS - Static variable in class ome.model.annotations.DatasetAnnotationLink

Details() - Constructor for class ome.model.annotations.DatasetAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.DatasetAnnotationLink.Details

details - Variable in class ome.model.annotations.DetectorAnnotationLink

DETAILS - Static variable in class ome.model.annotations.DetectorAnnotationLink

Details() - Constructor for class ome.model.annotations.DetectorAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.DetectorAnnotationLink.Details

details - Variable in class ome.model.annotations.DichroicAnnotationLink

DETAILS - Static variable in class ome.model.annotations.DichroicAnnotationLink

Details() - Constructor for class ome.model.annotations.DichroicAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.DichroicAnnotationLink.Details

details - Variable in class ome.model.annotations.ExperimenterAnnotationLink

DETAILS - Static variable in class ome.model.annotations.ExperimenterAnnotationLink

Details() - Constructor for class ome.model.annotations.ExperimenterAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink.Details

details - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

DETAILS - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

Details() - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink.Details

details - Variable in class ome.model.annotations.FilesetAnnotationLink

DETAILS - Static variable in class ome.model.annotations.FilesetAnnotationLink

Details() - Constructor for class ome.model.annotations.FilesetAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.FilesetAnnotationLink.Details

details - Variable in class ome.model.annotations.FilterAnnotationLink

DETAILS - Static variable in class ome.model.annotations.FilterAnnotationLink

Details() - Constructor for class ome.model.annotations.FilterAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.FilterAnnotationLink.Details

details - Variable in class ome.model.annotations.FolderAnnotationLink

DETAILS - Static variable in class ome.model.annotations.FolderAnnotationLink

Details() - Constructor for class ome.model.annotations.FolderAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.FolderAnnotationLink.Details

details - Variable in class ome.model.annotations.ImageAnnotationLink

DETAILS - Static variable in class ome.model.annotations.ImageAnnotationLink

Details() - Constructor for class ome.model.annotations.ImageAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.ImageAnnotationLink.Details

details - Variable in class ome.model.annotations.InstrumentAnnotationLink

DETAILS - Static variable in class ome.model.annotations.InstrumentAnnotationLink

Details() - Constructor for class ome.model.annotations.InstrumentAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.InstrumentAnnotationLink.Details

details - Variable in class ome.model.annotations.LightPathAnnotationLink

DETAILS - Static variable in class ome.model.annotations.LightPathAnnotationLink

Details() - Constructor for class ome.model.annotations.LightPathAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.LightPathAnnotationLink.Details

details - Variable in class ome.model.annotations.LightSourceAnnotationLink

DETAILS - Static variable in class ome.model.annotations.LightSourceAnnotationLink

Details() - Constructor for class ome.model.annotations.LightSourceAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.LightSourceAnnotationLink.Details

details - Variable in class ome.model.annotations.NamespaceAnnotationLink

DETAILS - Static variable in class ome.model.annotations.NamespaceAnnotationLink

Details() - Constructor for class ome.model.annotations.NamespaceAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.NamespaceAnnotationLink.Details

details - Variable in class ome.model.annotations.NodeAnnotationLink

DETAILS - Static variable in class ome.model.annotations.NodeAnnotationLink

Details() - Constructor for class ome.model.annotations.NodeAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.NodeAnnotationLink.Details

details - Variable in class ome.model.annotations.ObjectiveAnnotationLink

DETAILS - Static variable in class ome.model.annotations.ObjectiveAnnotationLink

Details() - Constructor for class ome.model.annotations.ObjectiveAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink.Details

details - Variable in class ome.model.annotations.OriginalFileAnnotationLink

DETAILS - Static variable in class ome.model.annotations.OriginalFileAnnotationLink

Details() - Constructor for class ome.model.annotations.OriginalFileAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink.Details

details - Variable in class ome.model.annotations.PlaneInfoAnnotationLink

DETAILS - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink

Details() - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink.Details

details - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

DETAILS - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

Details() - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink.Details

details - Variable in class ome.model.annotations.PlateAnnotationLink

DETAILS - Static variable in class ome.model.annotations.PlateAnnotationLink

Details() - Constructor for class ome.model.annotations.PlateAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.PlateAnnotationLink.Details

details - Variable in class ome.model.annotations.ProjectAnnotationLink

DETAILS - Static variable in class ome.model.annotations.ProjectAnnotationLink

Details() - Constructor for class ome.model.annotations.ProjectAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.ProjectAnnotationLink.Details

details - Variable in class ome.model.annotations.ReagentAnnotationLink

DETAILS - Static variable in class ome.model.annotations.ReagentAnnotationLink

Details() - Constructor for class ome.model.annotations.ReagentAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.ReagentAnnotationLink.Details

details - Variable in class ome.model.annotations.RoiAnnotationLink

DETAILS - Static variable in class ome.model.annotations.RoiAnnotationLink

Details() - Constructor for class ome.model.annotations.RoiAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.RoiAnnotationLink.Details

details - Variable in class ome.model.annotations.ScreenAnnotationLink

DETAILS - Static variable in class ome.model.annotations.ScreenAnnotationLink

Details() - Constructor for class ome.model.annotations.ScreenAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.ScreenAnnotationLink.Details

details - Variable in class ome.model.annotations.SessionAnnotationLink

DETAILS - Static variable in class ome.model.annotations.SessionAnnotationLink

Details() - Constructor for class ome.model.annotations.SessionAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.SessionAnnotationLink.Details

details - Variable in class ome.model.annotations.ShapeAnnotationLink

DETAILS - Static variable in class ome.model.annotations.ShapeAnnotationLink

Details() - Constructor for class ome.model.annotations.ShapeAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.ShapeAnnotationLink.Details

details - Variable in class ome.model.annotations.WellAnnotationLink

DETAILS - Static variable in class ome.model.annotations.WellAnnotationLink

Details() - Constructor for class ome.model.annotations.WellAnnotationLink.Details

Details(Object[]) - Constructor for class ome.model.annotations.WellAnnotationLink.Details

details - Variable in class ome.model.containers.Dataset

DETAILS - Static variable in class ome.model.containers.Dataset

Details() - Constructor for class ome.model.containers.Dataset.Details

Details(Object[]) - Constructor for class ome.model.containers.Dataset.Details

details - Variable in class ome.model.containers.DatasetImageLink

DETAILS - Static variable in class ome.model.containers.DatasetImageLink

Details() - Constructor for class ome.model.containers.DatasetImageLink.Details

Details(Object[]) - Constructor for class ome.model.containers.DatasetImageLink.Details

details - Variable in class ome.model.containers.Folder

DETAILS - Static variable in class ome.model.containers.Folder

Details() - Constructor for class ome.model.containers.Folder.Details

Details(Object[]) - Constructor for class ome.model.containers.Folder.Details

details - Variable in class ome.model.containers.FolderImageLink

DETAILS - Static variable in class ome.model.containers.FolderImageLink

Details() - Constructor for class ome.model.containers.FolderImageLink.Details

Details(Object[]) - Constructor for class ome.model.containers.FolderImageLink.Details

details - Variable in class ome.model.containers.FolderRoiLink

DETAILS - Static variable in class ome.model.containers.FolderRoiLink

Details() - Constructor for class ome.model.containers.FolderRoiLink.Details

Details(Object[]) - Constructor for class ome.model.containers.FolderRoiLink.Details

details - Variable in class ome.model.containers.Project

DETAILS - Static variable in class ome.model.containers.Project

Details() - Constructor for class ome.model.containers.Project.Details

Details(Object[]) - Constructor for class ome.model.containers.Project.Details

details - Variable in class ome.model.containers.ProjectDatasetLink

DETAILS - Static variable in class ome.model.containers.ProjectDatasetLink

Details() - Constructor for class ome.model.containers.ProjectDatasetLink.Details

Details(Object[]) - Constructor for class ome.model.containers.ProjectDatasetLink.Details

details - Variable in class ome.model.core.Channel

DETAILS - Static variable in class ome.model.core.Channel

Details() - Constructor for class ome.model.core.Channel.Details

Details(Object[]) - Constructor for class ome.model.core.Channel.Details

details - Variable in class ome.model.core.Image

DETAILS - Static variable in class ome.model.core.Image

Details() - Constructor for class ome.model.core.Image.Details

Details(Object[]) - Constructor for class ome.model.core.Image.Details

details - Variable in class ome.model.core.LogicalChannel

DETAILS - Static variable in class ome.model.core.LogicalChannel

Details() - Constructor for class ome.model.core.LogicalChannel.Details

Details(Object[]) - Constructor for class ome.model.core.LogicalChannel.Details

details - Variable in class ome.model.core.OriginalFile

DETAILS - Static variable in class ome.model.core.OriginalFile

Details() - Constructor for class ome.model.core.OriginalFile.Details

Details(Object[]) - Constructor for class ome.model.core.OriginalFile.Details

details - Variable in class ome.model.core.Pixels

DETAILS - Static variable in class ome.model.core.Pixels

Details() - Constructor for class ome.model.core.Pixels.Details

Details(Object[]) - Constructor for class ome.model.core.Pixels.Details

details - Variable in class ome.model.core.PixelsOriginalFileMap

DETAILS - Static variable in class ome.model.core.PixelsOriginalFileMap

Details() - Constructor for class ome.model.core.PixelsOriginalFileMap.Details

Details(Object[]) - Constructor for class ome.model.core.PixelsOriginalFileMap.Details

details - Variable in class ome.model.core.PlaneInfo

DETAILS - Static variable in class ome.model.core.PlaneInfo

Details() - Constructor for class ome.model.core.PlaneInfo.Details

Details(Object[]) - Constructor for class ome.model.core.PlaneInfo.Details

details - Variable in class ome.model.display.ChannelBinding

DETAILS - Static variable in class ome.model.display.ChannelBinding

Details() - Constructor for class ome.model.display.ChannelBinding.Details

Details(Object[]) - Constructor for class ome.model.display.ChannelBinding.Details

details - Variable in class ome.model.display.CodomainMapContext

DETAILS - Static variable in class ome.model.display.CodomainMapContext

Details() - Constructor for class ome.model.display.CodomainMapContext.Details

Details(Object[]) - Constructor for class ome.model.display.CodomainMapContext.Details

details - Variable in class ome.model.display.ProjectionDef

DETAILS - Static variable in class ome.model.display.ProjectionDef

Details() - Constructor for class ome.model.display.ProjectionDef.Details

Details(Object[]) - Constructor for class ome.model.display.ProjectionDef.Details

details - Variable in class ome.model.display.QuantumDef

DETAILS - Static variable in class ome.model.display.QuantumDef

Details() - Constructor for class ome.model.display.QuantumDef.Details

Details(Object[]) - Constructor for class ome.model.display.QuantumDef.Details

details - Variable in class ome.model.display.RenderingDef

DETAILS - Static variable in class ome.model.display.RenderingDef

Details() - Constructor for class ome.model.display.RenderingDef.Details

Details(Object[]) - Constructor for class ome.model.display.RenderingDef.Details

details - Variable in class ome.model.display.Thumbnail

DETAILS - Static variable in class ome.model.display.Thumbnail

Details() - Constructor for class ome.model.display.Thumbnail.Details

Details(Object[]) - Constructor for class ome.model.display.Thumbnail.Details

details - Variable in class ome.model.enums.AcquisitionMode

DETAILS - Static variable in class ome.model.enums.AcquisitionMode

Details() - Constructor for class ome.model.enums.AcquisitionMode.Details

Details(Object[]) - Constructor for class ome.model.enums.AcquisitionMode.Details

details - Variable in class ome.model.enums.AdminPrivilege

DETAILS - Static variable in class ome.model.enums.AdminPrivilege

Details() - Constructor for class ome.model.enums.AdminPrivilege.Details

Details(Object[]) - Constructor for class ome.model.enums.AdminPrivilege.Details

details - Variable in class ome.model.enums.ArcType

DETAILS - Static variable in class ome.model.enums.ArcType

Details() - Constructor for class ome.model.enums.ArcType.Details

Details(Object[]) - Constructor for class ome.model.enums.ArcType.Details

details - Variable in class ome.model.enums.Binning

DETAILS - Static variable in class ome.model.enums.Binning

Details() - Constructor for class ome.model.enums.Binning.Details

Details(Object[]) - Constructor for class ome.model.enums.Binning.Details

details - Variable in class ome.model.enums.ChecksumAlgorithm

DETAILS - Static variable in class ome.model.enums.ChecksumAlgorithm

Details() - Constructor for class ome.model.enums.ChecksumAlgorithm.Details

Details(Object[]) - Constructor for class ome.model.enums.ChecksumAlgorithm.Details

details - Variable in class ome.model.enums.ContrastMethod

DETAILS - Static variable in class ome.model.enums.ContrastMethod

Details() - Constructor for class ome.model.enums.ContrastMethod.Details

Details(Object[]) - Constructor for class ome.model.enums.ContrastMethod.Details

details - Variable in class ome.model.enums.Correction

DETAILS - Static variable in class ome.model.enums.Correction

Details() - Constructor for class ome.model.enums.Correction.Details

Details(Object[]) - Constructor for class ome.model.enums.Correction.Details

details - Variable in class ome.model.enums.DetectorType

DETAILS - Static variable in class ome.model.enums.DetectorType

Details() - Constructor for class ome.model.enums.DetectorType.Details

Details(Object[]) - Constructor for class ome.model.enums.DetectorType.Details

details - Variable in class ome.model.enums.DimensionOrder

DETAILS - Static variable in class ome.model.enums.DimensionOrder

Details() - Constructor for class ome.model.enums.DimensionOrder.Details

Details(Object[]) - Constructor for class ome.model.enums.DimensionOrder.Details

details - Variable in class ome.model.enums.EventType

DETAILS - Static variable in class ome.model.enums.EventType

Details() - Constructor for class ome.model.enums.EventType.Details

Details(Object[]) - Constructor for class ome.model.enums.EventType.Details

details - Variable in class ome.model.enums.ExperimentType

DETAILS - Static variable in class ome.model.enums.ExperimentType

Details() - Constructor for class ome.model.enums.ExperimentType.Details

Details(Object[]) - Constructor for class ome.model.enums.ExperimentType.Details

details - Variable in class ome.model.enums.Family

DETAILS - Static variable in class ome.model.enums.Family

Details() - Constructor for class ome.model.enums.Family.Details

Details(Object[]) - Constructor for class ome.model.enums.Family.Details

details - Variable in class ome.model.enums.FilamentType

DETAILS - Static variable in class ome.model.enums.FilamentType

Details() - Constructor for class ome.model.enums.FilamentType.Details

Details(Object[]) - Constructor for class ome.model.enums.FilamentType.Details

details - Variable in class ome.model.enums.FilterType

DETAILS - Static variable in class ome.model.enums.FilterType

Details() - Constructor for class ome.model.enums.FilterType.Details

Details(Object[]) - Constructor for class ome.model.enums.FilterType.Details

details - Variable in class ome.model.enums.Format

DETAILS - Static variable in class ome.model.enums.Format

Details() - Constructor for class ome.model.enums.Format.Details

Details(Object[]) - Constructor for class ome.model.enums.Format.Details

details - Variable in class ome.model.enums.Illumination

DETAILS - Static variable in class ome.model.enums.Illumination

Details() - Constructor for class ome.model.enums.Illumination.Details

Details(Object[]) - Constructor for class ome.model.enums.Illumination.Details

details - Variable in class ome.model.enums.Immersion

DETAILS - Static variable in class ome.model.enums.Immersion

Details() - Constructor for class ome.model.enums.Immersion.Details

Details(Object[]) - Constructor for class ome.model.enums.Immersion.Details

details - Variable in class ome.model.enums.LaserMedium

DETAILS - Static variable in class ome.model.enums.LaserMedium

Details() - Constructor for class ome.model.enums.LaserMedium.Details

Details(Object[]) - Constructor for class ome.model.enums.LaserMedium.Details

details - Variable in class ome.model.enums.LaserType

DETAILS - Static variable in class ome.model.enums.LaserType

Details() - Constructor for class ome.model.enums.LaserType.Details

Details(Object[]) - Constructor for class ome.model.enums.LaserType.Details

details - Variable in class ome.model.enums.Medium

DETAILS - Static variable in class ome.model.enums.Medium

Details() - Constructor for class ome.model.enums.Medium.Details

Details(Object[]) - Constructor for class ome.model.enums.Medium.Details

details - Variable in class ome.model.enums.MicrobeamManipulationType

DETAILS - Static variable in class ome.model.enums.MicrobeamManipulationType

Details() - Constructor for class ome.model.enums.MicrobeamManipulationType.Details

Details(Object[]) - Constructor for class ome.model.enums.MicrobeamManipulationType.Details

details - Variable in class ome.model.enums.MicroscopeType

DETAILS - Static variable in class ome.model.enums.MicroscopeType

Details() - Constructor for class ome.model.enums.MicroscopeType.Details

Details(Object[]) - Constructor for class ome.model.enums.MicroscopeType.Details

details - Variable in class ome.model.enums.PhotometricInterpretation

DETAILS - Static variable in class ome.model.enums.PhotometricInterpretation

Details() - Constructor for class ome.model.enums.PhotometricInterpretation.Details

Details(Object[]) - Constructor for class ome.model.enums.PhotometricInterpretation.Details

details - Variable in class ome.model.enums.PixelsType

DETAILS - Static variable in class ome.model.enums.PixelsType

Details() - Constructor for class ome.model.enums.PixelsType.Details

Details(Object[]) - Constructor for class ome.model.enums.PixelsType.Details

details - Variable in class ome.model.enums.ProjectionAxis

DETAILS - Static variable in class ome.model.enums.ProjectionAxis

Details() - Constructor for class ome.model.enums.ProjectionAxis.Details

Details(Object[]) - Constructor for class ome.model.enums.ProjectionAxis.Details

details - Variable in class ome.model.enums.ProjectionType

DETAILS - Static variable in class ome.model.enums.ProjectionType

Details() - Constructor for class ome.model.enums.ProjectionType.Details

Details(Object[]) - Constructor for class ome.model.enums.ProjectionType.Details

details - Variable in class ome.model.enums.Pulse

DETAILS - Static variable in class ome.model.enums.Pulse

Details() - Constructor for class ome.model.enums.Pulse.Details

Details(Object[]) - Constructor for class ome.model.enums.Pulse.Details

details - Variable in class ome.model.enums.RenderingModel

DETAILS - Static variable in class ome.model.enums.RenderingModel

Details() - Constructor for class ome.model.enums.RenderingModel.Details

Details(Object[]) - Constructor for class ome.model.enums.RenderingModel.Details

details - Variable in class ome.model.experiment.Experiment

DETAILS - Static variable in class ome.model.experiment.Experiment

Details() - Constructor for class ome.model.experiment.Experiment.Details

Details(Object[]) - Constructor for class ome.model.experiment.Experiment.Details

details - Variable in class ome.model.experiment.MicrobeamManipulation

DETAILS - Static variable in class ome.model.experiment.MicrobeamManipulation

Details() - Constructor for class ome.model.experiment.MicrobeamManipulation.Details

Details(Object[]) - Constructor for class ome.model.experiment.MicrobeamManipulation.Details

details - Variable in class ome.model.fs.Fileset

DETAILS - Static variable in class ome.model.fs.Fileset

Details() - Constructor for class ome.model.fs.Fileset.Details

Details(Object[]) - Constructor for class ome.model.fs.Fileset.Details

details - Variable in class ome.model.fs.FilesetEntry

DETAILS - Static variable in class ome.model.fs.FilesetEntry

Details() - Constructor for class ome.model.fs.FilesetEntry.Details

Details(Object[]) - Constructor for class ome.model.fs.FilesetEntry.Details

details - Variable in class ome.model.fs.FilesetJobLink

DETAILS - Static variable in class ome.model.fs.FilesetJobLink

Details() - Constructor for class ome.model.fs.FilesetJobLink.Details

Details(Object[]) - Constructor for class ome.model.fs.FilesetJobLink.Details

Details - Class in ome.model.internal

value type for low-level (row-level) details for all IObject objects.

Details() - Constructor for class ome.model.internal.Details

default constructor.

Details(Object[]) - Constructor for class ome.model.internal.Details

Details(Details) - Constructor for class ome.model.internal.Details

copy-constructor

details - Variable in class ome.model.internal.Link

DETAILS - Static variable in class ome.model.internal.Link

Details() - Constructor for class ome.model.internal.Link.Details

Details(Object[]) - Constructor for class ome.model.internal.Link.Details

details - Variable in class ome.model.jobs.Job

DETAILS - Static variable in class ome.model.jobs.Job

Details() - Constructor for class ome.model.jobs.Job.Details

Details(Object[]) - Constructor for class ome.model.jobs.Job.Details

details - Variable in class ome.model.jobs.JobOriginalFileLink

DETAILS - Static variable in class ome.model.jobs.JobOriginalFileLink

Details() - Constructor for class ome.model.jobs.JobOriginalFileLink.Details

Details(Object[]) - Constructor for class ome.model.jobs.JobOriginalFileLink.Details

details - Variable in class ome.model.jobs.JobStatus

DETAILS - Static variable in class ome.model.jobs.JobStatus

Details() - Constructor for class ome.model.jobs.JobStatus.Details

Details(Object[]) - Constructor for class ome.model.jobs.JobStatus.Details

details - Variable in class ome.model.meta.DBPatch

DETAILS - Static variable in class ome.model.meta.DBPatch

Details() - Constructor for class ome.model.meta.DBPatch.Details

Details(Object[]) - Constructor for class ome.model.meta.DBPatch.Details

details - Variable in class ome.model.meta.Event

DETAILS - Static variable in class ome.model.meta.Event

Details() - Constructor for class ome.model.meta.Event.Details

Details(Object[]) - Constructor for class ome.model.meta.Event.Details

details - Variable in class ome.model.meta.EventLog

DETAILS - Static variable in class ome.model.meta.EventLog

Details() - Constructor for class ome.model.meta.EventLog.Details

Details(Object[]) - Constructor for class ome.model.meta.EventLog.Details

details - Variable in class ome.model.meta.Experimenter

DETAILS - Static variable in class ome.model.meta.Experimenter

Details() - Constructor for class ome.model.meta.Experimenter.Details

Details(Object[]) - Constructor for class ome.model.meta.Experimenter.Details

details - Variable in class ome.model.meta.ExperimenterGroup

DETAILS - Static variable in class ome.model.meta.ExperimenterGroup

Details() - Constructor for class ome.model.meta.ExperimenterGroup.Details

Details(Object[]) - Constructor for class ome.model.meta.ExperimenterGroup.Details

details - Variable in class ome.model.meta.ExternalInfo

DETAILS - Static variable in class ome.model.meta.ExternalInfo

Details() - Constructor for class ome.model.meta.ExternalInfo.Details

Details(Object[]) - Constructor for class ome.model.meta.ExternalInfo.Details

details - Variable in class ome.model.meta.GroupExperimenterMap

DETAILS - Static variable in class ome.model.meta.GroupExperimenterMap

Details() - Constructor for class ome.model.meta.GroupExperimenterMap.Details

Details(Object[]) - Constructor for class ome.model.meta.GroupExperimenterMap.Details

details - Variable in class ome.model.meta.Namespace

DETAILS - Static variable in class ome.model.meta.Namespace

Details() - Constructor for class ome.model.meta.Namespace.Details

Details(Object[]) - Constructor for class ome.model.meta.Namespace.Details

details - Variable in class ome.model.meta.Node

DETAILS - Static variable in class ome.model.meta.Node

Details() - Constructor for class ome.model.meta.Node.Details

Details(Object[]) - Constructor for class ome.model.meta.Node.Details

details - Variable in class ome.model.meta.Session

DETAILS - Static variable in class ome.model.meta.Session

Details() - Constructor for class ome.model.meta.Session.Details

Details(Object[]) - Constructor for class ome.model.meta.Session.Details

details - Variable in class ome.model.meta.ShareMember

DETAILS - Static variable in class ome.model.meta.ShareMember

Details() - Constructor for class ome.model.meta.ShareMember.Details

Details(Object[]) - Constructor for class ome.model.meta.ShareMember.Details

details - Variable in class ome.model.roi.AffineTransform

DETAILS - Static variable in class ome.model.roi.AffineTransform

Details() - Constructor for class ome.model.roi.AffineTransform.Details

Details(Object[]) - Constructor for class ome.model.roi.AffineTransform.Details

details - Variable in class ome.model.roi.Roi

DETAILS - Static variable in class ome.model.roi.Roi

Details() - Constructor for class ome.model.roi.Roi.Details

Details(Object[]) - Constructor for class ome.model.roi.Roi.Details

details - Variable in class ome.model.roi.Shape

DETAILS - Static variable in class ome.model.roi.Shape

Details() - Constructor for class ome.model.roi.Shape.Details

Details(Object[]) - Constructor for class ome.model.roi.Shape.Details

details - Variable in class ome.model.screen.Plate

DETAILS - Static variable in class ome.model.screen.Plate

Details() - Constructor for class ome.model.screen.Plate.Details

Details(Object[]) - Constructor for class ome.model.screen.Plate.Details

details - Variable in class ome.model.screen.PlateAcquisition

DETAILS - Static variable in class ome.model.screen.PlateAcquisition

Details() - Constructor for class ome.model.screen.PlateAcquisition.Details

Details(Object[]) - Constructor for class ome.model.screen.PlateAcquisition.Details

details - Variable in class ome.model.screen.Reagent

DETAILS - Static variable in class ome.model.screen.Reagent

Details() - Constructor for class ome.model.screen.Reagent.Details

Details(Object[]) - Constructor for class ome.model.screen.Reagent.Details

details - Variable in class ome.model.screen.Screen

DETAILS - Static variable in class ome.model.screen.Screen

Details() - Constructor for class ome.model.screen.Screen.Details

Details(Object[]) - Constructor for class ome.model.screen.Screen.Details

details - Variable in class ome.model.screen.ScreenPlateLink

DETAILS - Static variable in class ome.model.screen.ScreenPlateLink

Details() - Constructor for class ome.model.screen.ScreenPlateLink.Details

Details(Object[]) - Constructor for class ome.model.screen.ScreenPlateLink.Details

details - Variable in class ome.model.screen.Well

DETAILS - Static variable in class ome.model.screen.Well

Details() - Constructor for class ome.model.screen.Well.Details

Details(Object[]) - Constructor for class ome.model.screen.Well.Details

details - Variable in class ome.model.screen.WellReagentLink

DETAILS - Static variable in class ome.model.screen.WellReagentLink

Details() - Constructor for class ome.model.screen.WellReagentLink.Details

Details(Object[]) - Constructor for class ome.model.screen.WellReagentLink.Details

details - Variable in class ome.model.screen.WellSample

DETAILS - Static variable in class ome.model.screen.WellSample

Details() - Constructor for class ome.model.screen.WellSample.Details

Details(Object[]) - Constructor for class ome.model.screen.WellSample.Details

details - Variable in class ome.model.stats.StatsInfo

DETAILS - Static variable in class ome.model.stats.StatsInfo

Details() - Constructor for class ome.model.stats.StatsInfo.Details

Details(Object[]) - Constructor for class ome.model.stats.StatsInfo.Details

DetailsFieldBridge - Class in ome.util

Delegating FieldBridge which passes the "fieldBridge" bean from the "ome.model" Spring ApplicationContext all arguments.

DetailsFieldBridge() - Constructor for class ome.util.DetailsFieldBridge

Detector - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Detector() - Constructor for class ome.model.acquisition.Detector

Detector(Long) - Constructor for class ome.model.acquisition.Detector

Detector(Long, boolean) - Constructor for class ome.model.acquisition.Detector

Main constructor.

Detector(DetectorType, Instrument) - Constructor for class ome.model.acquisition.Detector

detector - Variable in class ome.model.acquisition.DetectorSettings

DETECTOR - Static variable in class ome.model.acquisition.DetectorSettings

detector - Variable in class ome.model.acquisition.Instrument

DETECTOR - Static variable in class ome.model.acquisition.Instrument

Detector.Details - Class in ome.model.acquisition

DetectorAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

DetectorAnnotationLink() - Constructor for class ome.model.annotations.DetectorAnnotationLink

DetectorAnnotationLink(Long) - Constructor for class ome.model.annotations.DetectorAnnotationLink

DetectorAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DetectorAnnotationLink

Main constructor.

DetectorAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DetectorAnnotationLink

DetectorAnnotationLink.Details - Class in ome.model.annotations

DetectorSettings - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

DetectorSettings() - Constructor for class ome.model.acquisition.DetectorSettings

DetectorSettings(Long) - Constructor for class ome.model.acquisition.DetectorSettings

DetectorSettings(Long, boolean) - Constructor for class ome.model.acquisition.DetectorSettings

Main constructor.

DetectorSettings(Detector) - Constructor for class ome.model.acquisition.DetectorSettings

detectorSettings - Variable in class ome.model.core.LogicalChannel

DETECTORSETTINGS - Static variable in class ome.model.core.LogicalChannel

DetectorSettings.Details - Class in ome.model.acquisition

DetectorType - Class in ome.model.enums

DetectorType() - Constructor for class ome.model.enums.DetectorType

DetectorType(Long) - Constructor for class ome.model.enums.DetectorType

DetectorType(Long, boolean) - Constructor for class ome.model.enums.DetectorType

Main constructor.

DetectorType(String) - Constructor for class ome.model.enums.DetectorType

DetectorType.Details - Class in ome.model.enums

Dichroic - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Dichroic() - Constructor for class ome.model.acquisition.Dichroic

Dichroic(Long) - Constructor for class ome.model.acquisition.Dichroic

Dichroic(Long, boolean) - Constructor for class ome.model.acquisition.Dichroic

Main constructor.

Dichroic(Instrument) - Constructor for class ome.model.acquisition.Dichroic

dichroic - Variable in class ome.model.acquisition.FilterSet

DICHROIC - Static variable in class ome.model.acquisition.FilterSet

dichroic - Variable in class ome.model.acquisition.Instrument

DICHROIC - Static variable in class ome.model.acquisition.Instrument

dichroic - Variable in class ome.model.acquisition.LightPath

DICHROIC - Static variable in class ome.model.acquisition.LightPath

Dichroic.Details - Class in ome.model.acquisition

DichroicAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

DichroicAnnotationLink() - Constructor for class ome.model.annotations.DichroicAnnotationLink

DichroicAnnotationLink(Long) - Constructor for class ome.model.annotations.DichroicAnnotationLink

DichroicAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DichroicAnnotationLink

Main constructor.

DichroicAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DichroicAnnotationLink

DichroicAnnotationLink.Details - Class in ome.model.annotations

dimensionOrder - Variable in class ome.model.core.Pixels

DIMENSIONORDER - Static variable in class ome.model.core.Pixels

DimensionOrder - Class in ome.model.enums

DimensionOrder() - Constructor for class ome.model.enums.DimensionOrder

DimensionOrder(Long) - Constructor for class ome.model.enums.DimensionOrder

DimensionOrder(Long, boolean) - Constructor for class ome.model.enums.DimensionOrder

Main constructor.

DimensionOrder(String) - Constructor for class ome.model.enums.DimensionOrder

DimensionOrder.Details - Class in ome.model.enums

disassemble(Object) - Method in class ome.model.units.GenericEnumType

display - Variable in class ome.model.meta.Namespace

DISPLAY - Static variable in class ome.model.meta.Namespace

displayName - Variable in class ome.model.meta.Namespace

DISPLAYNAME - Static variable in class ome.model.meta.Namespace

dispose() - Method in class ome.util.PixelData

Attempt to free up any native memory resources associated with the data buffer.

doFilter(String, Object) - Method in class ome.util.ContextFilter

doFilter(String, Filterable) - Method in class ome.util.ContextFilter

doFilter(String, Collection) - Method in class ome.util.ContextFilter

DOUBLE - Static variable in class ome.util.PixelData

Identifies the type used to store pixel values.

DoubleAnnotation - Class in ome.model.annotations

DoubleAnnotation() - Constructor for class ome.model.annotations.DoubleAnnotation

DoubleAnnotation(Long) - Constructor for class ome.model.annotations.DoubleAnnotation

DoubleAnnotation(Long, boolean) - Constructor for class ome.model.annotations.DoubleAnnotation

Main constructor.

doubleValue - Variable in class ome.model.annotations.DoubleAnnotation

DOUBLEVALUE - Static variable in class ome.model.annotations.DoubleAnnotation

doUpdateRows(Serializable, PersistentCollection, SessionImplementor) - Method in class ome.util.CountCollectionPersister

down - Variable in class ome.model.meta.Node

DOWN - Static variable in class ome.model.meta.Node

DUMMY - Static variable in class ome.model.internal.Permissions

Marker object which can be set on objects to show that the Permissions instance given contains no value.

E

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Detector

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Dichroic

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Filter

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Instrument

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.LightPath

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.LightSource

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Objective

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.annotations.Annotation

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Dataset

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Folder

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Project

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.Channel

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.Image

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.OriginalFile

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.PlaneInfo

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.fs.Fileset

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in interface ome.model.IAnnotated

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Experimenter

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Namespace

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Node

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Session

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.roi.Roi

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.roi.Shape

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Plate

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Reagent

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Screen

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Well

takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.

eachLinkedDataset(CBlock<E>) - Method in class ome.model.containers.Project

takes a CBlock and calls the block once for each ome.model.containers.Dataset while collecting the results.

eachLinkedDataset(CBlock<E>) - Method in class ome.model.core.Image

takes a CBlock and calls the block once for each ome.model.containers.Dataset while collecting the results.

eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.Filter

takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.

eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.FilterSet

takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.

eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.LightPath

takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.

eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.Filter

takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.

eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.FilterSet

takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.

eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.LightPath

takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.

eachLinkedExperimenter(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup

takes a CBlock and calls the block once for each ome.model.meta.Experimenter while collecting the results.

eachLinkedExperimenterGroup(CBlock<E>) - Method in class ome.model.meta.Experimenter

takes a CBlock and calls the block once for each ome.model.meta.ExperimenterGroup while collecting the results.

eachLinkedFolder(CBlock<E>) - Method in class ome.model.core.Image

takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.

eachLinkedFolder(CBlock<E>) - Method in class ome.model.roi.Roi

takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.

eachLinkedImage(CBlock<E>) - Method in class ome.model.containers.Dataset

takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.

eachLinkedImage(CBlock<E>) - Method in class ome.model.containers.Folder

takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.

eachLinkedJob(CBlock<E>) - Method in class ome.model.fs.Fileset

takes a CBlock and calls the block once for each ome.model.jobs.Job while collecting the results.

eachLinkedOriginalFile(CBlock<E>) - Method in class ome.model.core.Pixels

takes a CBlock and calls the block once for each ome.model.core.OriginalFile while collecting the results.

eachLinkedOriginalFile(CBlock<E>) - Method in class ome.model.jobs.Job

takes a CBlock and calls the block once for each ome.model.core.OriginalFile while collecting the results.

eachLinkedPixels(CBlock<E>) - Method in class ome.model.core.OriginalFile

takes a CBlock and calls the block once for each ome.model.core.Pixels while collecting the results.

eachLinkedPlate(CBlock<E>) - Method in class ome.model.screen.Screen

takes a CBlock and calls the block once for each ome.model.screen.Plate while collecting the results.

eachLinkedProject(CBlock<E>) - Method in class ome.model.containers.Dataset

takes a CBlock and calls the block once for each ome.model.containers.Project while collecting the results.

eachLinkedReagent(CBlock<E>) - Method in class ome.model.screen.Well

takes a CBlock and calls the block once for each ome.model.screen.Reagent while collecting the results.

eachLinkedRoi(CBlock<E>) - Method in class ome.model.containers.Folder

takes a CBlock and calls the block once for each ome.model.roi.Roi while collecting the results.

eachLinkedScreen(CBlock<E>) - Method in class ome.model.screen.Plate

takes a CBlock and calls the block once for each ome.model.screen.Screen while collecting the results.

eachLinkedWell(CBlock<E>) - Method in class ome.model.screen.Reagent

takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.

EDITRESTRICTION - Static variable in class ome.model.internal.Permissions

ElectricPotential - Class in ome.model.units

class storing both a ElectricPotential and a unit for that ElectricPotential (e.g.

ElectricPotential() - Constructor for class ome.model.units.ElectricPotential

Deprecated.

ElectricPotential(double, String) - Constructor for class ome.model.units.ElectricPotential

ElectricPotential(double, UnitsElectricPotential) - Constructor for class ome.model.units.ElectricPotential

ElectricPotential(double, Unit<ElectricPotential>) - Constructor for class ome.model.units.ElectricPotential

ElectricPotential(ElectricPotential) - Constructor for class ome.model.units.ElectricPotential

Ellipse - Class in ome.model.roi

Ellipse() - Constructor for class ome.model.roi.Ellipse

Ellipse(Long) - Constructor for class ome.model.roi.Ellipse

Ellipse(Long, boolean) - Constructor for class ome.model.roi.Ellipse

Main constructor.

email - Variable in class ome.model.meta.Experimenter

EMAIL - Static variable in class ome.model.meta.Experimenter

emissionFilterLink - Variable in class ome.model.acquisition.Filter

EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter

emissionFilterLink - Variable in class ome.model.acquisition.FilterSet

EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet

emissionFilterLink - Variable in class ome.model.acquisition.LightPath

EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath

EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter

EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.FilterSet

EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath

emissionWave - Variable in class ome.model.core.LogicalChannel

EMISSIONWAVE - Static variable in class ome.model.core.LogicalChannel

EMPTY - Static variable in class ome.model.internal.Permissions

an immutable Permissions instance with all rights turned off.

EmptyIterator<E> - Class in ome.util

utility iterator which does nothing as quickly as possible.

EmptyIterator() - Constructor for class ome.util.EmptyIterator

endPlane - Variable in class ome.model.display.ProjectionDef

ENDPLANE - Static variable in class ome.model.display.ProjectionDef

endTime - Variable in class ome.model.screen.PlateAcquisition

ENDTIME - Static variable in class ome.model.screen.PlateAcquisition

endTime - Variable in class ome.parameters.Filter

endTime(Timestamp) - Method in class ome.parameters.Parameters

enter(Object) - Method in class ome.util.ContextFilter

entityId - Variable in class ome.model.meta.EventLog

ENTITYID - Static variable in class ome.model.meta.EventLog

entityId - Variable in class ome.model.meta.ExternalInfo

ENTITYID - Static variable in class ome.model.meta.ExternalInfo

entityType - Variable in class ome.model.meta.EventLog

ENTITYTYPE - Static variable in class ome.model.meta.EventLog

entityType - Variable in class ome.model.meta.ExternalInfo

ENTITYTYPE - Static variable in class ome.model.meta.ExternalInfo

entry(String, Object) - Method in class ome.util.RdfPrinter

equals(Object) - Method in class ome.model.enums.AcquisitionMode

equals(Object) - Method in class ome.model.enums.AdminPrivilege

equals(Object) - Method in class ome.model.enums.ArcType

equals(Object) - Method in class ome.model.enums.Binning

equals(Object) - Method in class ome.model.enums.ChecksumAlgorithm

equals(Object) - Method in class ome.model.enums.ContrastMethod

equals(Object) - Method in class ome.model.enums.Correction

equals(Object) - Method in class ome.model.enums.DetectorType

equals(Object) - Method in class ome.model.enums.DimensionOrder

equals(Object) - Method in class ome.model.enums.EventType

equals(Object) - Method in class ome.model.enums.ExperimentType

equals(Object) - Method in class ome.model.enums.Family

equals(Object) - Method in class ome.model.enums.FilamentType

equals(Object) - Method in class ome.model.enums.FilterType

equals(Object) - Method in class ome.model.enums.Format

equals(Object) - Method in class ome.model.enums.Illumination

equals(Object) - Method in class ome.model.enums.Immersion

equals(Object) - Method in class ome.model.enums.LaserMedium

equals(Object) - Method in class ome.model.enums.LaserType

equals(Object) - Method in class ome.model.enums.Medium

equals(Object) - Method in class ome.model.enums.MicrobeamManipulationType

equals(Object) - Method in class ome.model.enums.MicroscopeType

equals(Object) - Method in class ome.model.enums.PhotometricInterpretation

equals(Object) - Method in class ome.model.enums.PixelsType

equals(Object) - Method in class ome.model.enums.ProjectionAxis

equals(Object) - Method in class ome.model.enums.ProjectionType

equals(Object) - Method in class ome.model.enums.Pulse

equals(Object) - Method in class ome.model.enums.RenderingModel

equals(Object) - Method in class ome.model.internal.NamedValue

equals(Object) - Method in class ome.model.jobs.JobStatus

equals(Object) - Method in class ome.model.units.ElectricPotential

equals(Object) - Method in class ome.model.units.Frequency

equals(Object, Object) - Method in class ome.model.units.GenericEnumType

equals(Object) - Method in class ome.model.units.Length

equals(Object) - Method in class ome.model.units.Power

equals(Object) - Method in class ome.model.units.Pressure

equals(Object) - Method in class ome.model.units.Temperature

equals(Object) - Method in class ome.model.units.Time

equals(Object) - Method in class ome.parameters.QueryParameter

equals(Object) - Method in class ome.util.LSID

errorIfUnloaded() - Method in class ome.model.acquisition.Detector

errorIfUnloaded() - Method in class ome.model.acquisition.DetectorSettings

errorIfUnloaded() - Method in class ome.model.acquisition.Dichroic

errorIfUnloaded() - Method in class ome.model.acquisition.Filter

errorIfUnloaded() - Method in class ome.model.acquisition.FilterSet

errorIfUnloaded() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

errorIfUnloaded() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

errorIfUnloaded() - Method in class ome.model.acquisition.ImagingEnvironment

errorIfUnloaded() - Method in class ome.model.acquisition.Instrument

errorIfUnloaded() - Method in class ome.model.acquisition.LightPath

errorIfUnloaded() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

errorIfUnloaded() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

errorIfUnloaded() - Method in class ome.model.acquisition.LightSettings

errorIfUnloaded() - Method in class ome.model.acquisition.LightSource

errorIfUnloaded() - Method in class ome.model.acquisition.Microscope

errorIfUnloaded() - Method in class ome.model.acquisition.Objective

errorIfUnloaded() - Method in class ome.model.acquisition.ObjectiveSettings

errorIfUnloaded() - Method in class ome.model.acquisition.OTF

errorIfUnloaded() - Method in class ome.model.acquisition.StageLabel

errorIfUnloaded() - Method in class ome.model.acquisition.TransmittanceRange

errorIfUnloaded() - Method in class ome.model.annotations.Annotation

errorIfUnloaded() - Method in class ome.model.annotations.AnnotationAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.ChannelAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.DatasetAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.DetectorAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.DichroicAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.ExperimenterAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.FilesetAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.FilterAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.FolderAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.ImageAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.InstrumentAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.LightPathAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.LightSourceAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.NamespaceAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.NodeAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.ObjectiveAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.OriginalFileAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.PlateAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.ProjectAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.ReagentAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.RoiAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.ScreenAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.SessionAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.ShapeAnnotationLink

errorIfUnloaded() - Method in class ome.model.annotations.WellAnnotationLink

errorIfUnloaded() - Method in class ome.model.containers.Dataset

errorIfUnloaded() - Method in class ome.model.containers.DatasetImageLink

errorIfUnloaded() - Method in class ome.model.containers.Folder

errorIfUnloaded() - Method in class ome.model.containers.FolderImageLink

errorIfUnloaded() - Method in class ome.model.containers.FolderRoiLink

errorIfUnloaded() - Method in class ome.model.containers.Project

errorIfUnloaded() - Method in class ome.model.containers.ProjectDatasetLink

errorIfUnloaded() - Method in class ome.model.core.Channel

errorIfUnloaded() - Method in class ome.model.core.Image

errorIfUnloaded() - Method in class ome.model.core.LogicalChannel

errorIfUnloaded() - Method in class ome.model.core.OriginalFile

errorIfUnloaded() - Method in class ome.model.core.Pixels

errorIfUnloaded() - Method in class ome.model.core.PixelsOriginalFileMap

errorIfUnloaded() - Method in class ome.model.core.PlaneInfo

errorIfUnloaded() - Method in class ome.model.display.ChannelBinding

errorIfUnloaded() - Method in class ome.model.display.CodomainMapContext

errorIfUnloaded() - Method in class ome.model.display.ProjectionDef

errorIfUnloaded() - Method in class ome.model.display.QuantumDef

errorIfUnloaded() - Method in class ome.model.display.RenderingDef

errorIfUnloaded() - Method in class ome.model.display.Thumbnail

errorIfUnloaded() - Method in class ome.model.enums.AcquisitionMode

errorIfUnloaded() - Method in class ome.model.enums.AdminPrivilege

errorIfUnloaded() - Method in class ome.model.enums.ArcType

errorIfUnloaded() - Method in class ome.model.enums.Binning

errorIfUnloaded() - Method in class ome.model.enums.ChecksumAlgorithm

errorIfUnloaded() - Method in class ome.model.enums.ContrastMethod

errorIfUnloaded() - Method in class ome.model.enums.Correction

errorIfUnloaded() - Method in class ome.model.enums.DetectorType

errorIfUnloaded() - Method in class ome.model.enums.DimensionOrder

errorIfUnloaded() - Method in class ome.model.enums.EventType

errorIfUnloaded() - Method in class ome.model.enums.ExperimentType

errorIfUnloaded() - Method in class ome.model.enums.Family

errorIfUnloaded() - Method in class ome.model.enums.FilamentType

errorIfUnloaded() - Method in class ome.model.enums.FilterType

errorIfUnloaded() - Method in class ome.model.enums.Format

errorIfUnloaded() - Method in class ome.model.enums.Illumination

errorIfUnloaded() - Method in class ome.model.enums.Immersion

errorIfUnloaded() - Method in class ome.model.enums.LaserMedium

errorIfUnloaded() - Method in class ome.model.enums.LaserType

errorIfUnloaded() - Method in class ome.model.enums.Medium

errorIfUnloaded() - Method in class ome.model.enums.MicrobeamManipulationType

errorIfUnloaded() - Method in class ome.model.enums.MicroscopeType

errorIfUnloaded() - Method in class ome.model.enums.PhotometricInterpretation

errorIfUnloaded() - Method in class ome.model.enums.PixelsType

errorIfUnloaded() - Method in class ome.model.enums.ProjectionAxis

errorIfUnloaded() - Method in class ome.model.enums.ProjectionType

errorIfUnloaded() - Method in class ome.model.enums.Pulse

errorIfUnloaded() - Method in class ome.model.enums.RenderingModel

errorIfUnloaded() - Method in class ome.model.experiment.Experiment

errorIfUnloaded() - Method in class ome.model.experiment.MicrobeamManipulation

errorIfUnloaded() - Method in class ome.model.fs.Fileset

errorIfUnloaded() - Method in class ome.model.fs.FilesetEntry

errorIfUnloaded() - Method in class ome.model.fs.FilesetJobLink

errorIfUnloaded() - Method in class ome.model.internal.Link

errorIfUnloaded() - Method in class ome.model.jobs.Job

errorIfUnloaded() - Method in class ome.model.jobs.JobOriginalFileLink

errorIfUnloaded() - Method in class ome.model.jobs.JobStatus

errorIfUnloaded() - Method in class ome.model.meta.DBPatch

errorIfUnloaded() - Method in class ome.model.meta.Event

errorIfUnloaded() - Method in class ome.model.meta.EventLog

errorIfUnloaded() - Method in class ome.model.meta.Experimenter

errorIfUnloaded() - Method in class ome.model.meta.ExperimenterGroup

errorIfUnloaded() - Method in class ome.model.meta.ExternalInfo

errorIfUnloaded() - Method in class ome.model.meta.GroupExperimenterMap

errorIfUnloaded() - Method in class ome.model.meta.Namespace

errorIfUnloaded() - Method in class ome.model.meta.Node

errorIfUnloaded() - Method in class ome.model.meta.Session

errorIfUnloaded() - Method in class ome.model.meta.ShareMember

errorIfUnloaded() - Method in class ome.model.roi.AffineTransform

errorIfUnloaded() - Method in class ome.model.roi.Roi

errorIfUnloaded() - Method in class ome.model.roi.Shape

errorIfUnloaded() - Method in class ome.model.screen.Plate

errorIfUnloaded() - Method in class ome.model.screen.PlateAcquisition

errorIfUnloaded() - Method in class ome.model.screen.Reagent

errorIfUnloaded() - Method in class ome.model.screen.Screen

errorIfUnloaded() - Method in class ome.model.screen.ScreenPlateLink

errorIfUnloaded() - Method in class ome.model.screen.Well

errorIfUnloaded() - Method in class ome.model.screen.WellReagentLink

errorIfUnloaded() - Method in class ome.model.screen.WellSample

errorIfUnloaded() - Method in class ome.model.stats.StatsInfo

Event - Class in ome.model.meta

Event() - Constructor for class ome.model.meta.Event

Event(Long) - Constructor for class ome.model.meta.Event

Event(Long, boolean) - Constructor for class ome.model.meta.Event

Main constructor.

Event(Timestamp, Experimenter, ExperimenterGroup, EventType, Session) - Constructor for class ome.model.meta.Event

event - Variable in class ome.model.meta.EventLog

EVENT - Static variable in class ome.model.meta.EventLog

Event.Details - Class in ome.model.meta

event2timestamp(Event) - Method in class ome.util.ModelMapper

EVENT_FILTER - Static variable in class ome.model.acquisition.Arc

EVENT_FILTER - Static variable in class ome.model.acquisition.Detector

EVENT_FILTER - Static variable in class ome.model.acquisition.DetectorSettings

EVENT_FILTER - Static variable in class ome.model.acquisition.Dichroic

EVENT_FILTER - Static variable in class ome.model.acquisition.Filament

EVENT_FILTER - Static variable in class ome.model.acquisition.Filter

EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSet

EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink

EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink

EVENT_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource

EVENT_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment

EVENT_FILTER - Static variable in class ome.model.acquisition.Instrument

EVENT_FILTER - Static variable in class ome.model.acquisition.Laser

EVENT_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode

EVENT_FILTER - Static variable in class ome.model.acquisition.LightPath

EVENT_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink

EVENT_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink

EVENT_FILTER - Static variable in class ome.model.acquisition.LightSettings

EVENT_FILTER - Static variable in class ome.model.acquisition.LightSource

EVENT_FILTER - Static variable in class ome.model.acquisition.Microscope

EVENT_FILTER - Static variable in class ome.model.acquisition.Objective

EVENT_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings

EVENT_FILTER - Static variable in class ome.model.acquisition.OTF

EVENT_FILTER - Static variable in class ome.model.acquisition.StageLabel

EVENT_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange

EVENT_FILTER - Static variable in class ome.model.annotations.Annotation

EVENT_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.BasicAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.CommentAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.FileAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.ListAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.LongAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.MapAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.NumericAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.TagAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.TermAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.TextAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.TypeAnnotation

EVENT_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink

EVENT_FILTER - Static variable in class ome.model.annotations.XmlAnnotation

EVENT_FILTER - Static variable in class ome.model.containers.Dataset

EVENT_FILTER - Static variable in class ome.model.containers.DatasetImageLink

EVENT_FILTER - Static variable in class ome.model.containers.Folder

EVENT_FILTER - Static variable in class ome.model.containers.FolderImageLink

EVENT_FILTER - Static variable in class ome.model.containers.FolderRoiLink

EVENT_FILTER - Static variable in class ome.model.containers.Project

EVENT_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink

EVENT_FILTER - Static variable in class ome.model.core.Channel

EVENT_FILTER - Static variable in class ome.model.core.Image

EVENT_FILTER - Static variable in class ome.model.core.LogicalChannel

EVENT_FILTER - Static variable in class ome.model.core.OriginalFile

EVENT_FILTER - Static variable in class ome.model.core.Pixels

EVENT_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap

EVENT_FILTER - Static variable in class ome.model.core.PlaneInfo

EVENT_FILTER - Static variable in class ome.model.display.ChannelBinding

EVENT_FILTER - Static variable in class ome.model.display.CodomainMapContext

EVENT_FILTER - Static variable in class ome.model.display.ContrastStretchingContext

EVENT_FILTER - Static variable in class ome.model.display.PlaneSlicingContext

EVENT_FILTER - Static variable in class ome.model.display.ProjectionDef

EVENT_FILTER - Static variable in class ome.model.display.QuantumDef

EVENT_FILTER - Static variable in class ome.model.display.RenderingDef

EVENT_FILTER - Static variable in class ome.model.display.ReverseIntensityContext

EVENT_FILTER - Static variable in class ome.model.display.Thumbnail

EVENT_FILTER - Static variable in class ome.model.experiment.Experiment

EVENT_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation

EVENT_FILTER - Static variable in class ome.model.fs.Fileset

EVENT_FILTER - Static variable in class ome.model.fs.FilesetEntry

EVENT_FILTER - Static variable in class ome.model.fs.FilesetJobLink

EVENT_FILTER - Static variable in class ome.model.internal.Link

EVENT_FILTER - Static variable in class ome.model.jobs.ImportJob

Deprecated.

EVENT_FILTER - Static variable in class ome.model.jobs.IndexingJob

EVENT_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob

EVENT_FILTER - Static variable in class ome.model.jobs.Job

EVENT_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink

EVENT_FILTER - Static variable in class ome.model.jobs.MetadataImportJob

EVENT_FILTER - Static variable in class ome.model.jobs.ParseJob

EVENT_FILTER - Static variable in class ome.model.jobs.PixelDataJob

EVENT_FILTER - Static variable in class ome.model.jobs.ScriptJob

EVENT_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob

EVENT_FILTER - Static variable in class ome.model.jobs.UploadJob

EVENT_FILTER - Static variable in class ome.model.meta.ExternalInfo

EVENT_FILTER - Static variable in class ome.model.roi.AffineTransform

EVENT_FILTER - Static variable in class ome.model.roi.Ellipse

EVENT_FILTER - Static variable in class ome.model.roi.Label

EVENT_FILTER - Static variable in class ome.model.roi.Line

EVENT_FILTER - Static variable in class ome.model.roi.Mask

EVENT_FILTER - Static variable in class ome.model.roi.Path

Deprecated.

EVENT_FILTER - Static variable in class ome.model.roi.Point

EVENT_FILTER - Static variable in class ome.model.roi.Polygon

EVENT_FILTER - Static variable in class ome.model.roi.Polyline

EVENT_FILTER - Static variable in class ome.model.roi.Rectangle

EVENT_FILTER - Static variable in class ome.model.roi.Roi

EVENT_FILTER - Static variable in class ome.model.roi.Shape

EVENT_FILTER - Static variable in class ome.model.screen.Plate

EVENT_FILTER - Static variable in class ome.model.screen.PlateAcquisition

EVENT_FILTER - Static variable in class ome.model.screen.Reagent

EVENT_FILTER - Static variable in class ome.model.screen.Screen

EVENT_FILTER - Static variable in class ome.model.screen.ScreenPlateLink

EVENT_FILTER - Static variable in class ome.model.screen.Well

EVENT_FILTER - Static variable in class ome.model.screen.WellReagentLink

EVENT_FILTER - Static variable in class ome.model.screen.WellSample

EVENT_FILTER - Static variable in class ome.model.stats.StatsInfo

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen

EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well

EVENT_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel

EVENT_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels

EVENT_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder

EVENT_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project

EVENT_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image

EVENT_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument

EVENT_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument

EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter

EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet

EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath

EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter

EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet

EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath

EVENT_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile

EVENT_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument

EVENT_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument

EVENT_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image

EVENT_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi

EVENT_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset

EVENT_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder

EVENT_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset

EVENT_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset

EVENT_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument

EVENT_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation

EVENT_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment

EVENT_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument

EVENT_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job

EVENT_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument

EVENT_FILTER_PIXELS - Static variable in class ome.model.core.Image

EVENT_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile

EVENT_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels

EVENT_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels

EVENT_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate

EVENT_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen

EVENT_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef

EVENT_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset

EVENT_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well

EVENT_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen

EVENT_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder

EVENT_FILTER_ROIS - Static variable in class ome.model.core.Image

EVENT_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate

EVENT_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels

EVENT_FILTER_SHAPES - Static variable in class ome.model.roi.Roi

EVENT_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding

EVENT_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels

EVENT_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset

EVENT_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef

EVENT_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent

EVENT_FILTER_WELLS - Static variable in class ome.model.screen.Plate

EVENT_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition

EVENT_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image

EVENT_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well

eventId - Variable in class ome.util.SqlAction.DeleteLog

EventLog - Class in ome.model.meta

EventLog() - Constructor for class ome.model.meta.EventLog

EventLog(Long) - Constructor for class ome.model.meta.EventLog

EventLog(Long, boolean) - Constructor for class ome.model.meta.EventLog

Main constructor.

EventLog(Long, String, String, Event) - Constructor for class ome.model.meta.EventLog

EventLog.Details - Class in ome.model.meta

events - Variable in class ome.model.meta.Session

EVENTS - Static variable in class ome.model.meta.Session

EventType - Class in ome.model.enums

EventType() - Constructor for class ome.model.enums.EventType

EventType(Long) - Constructor for class ome.model.enums.EventType

EventType(Long, boolean) - Constructor for class ome.model.enums.EventType

Main constructor.

EventType(String) - Constructor for class ome.model.enums.EventType

EventType.Details - Class in ome.model.enums

excitationFilterLink - Variable in class ome.model.acquisition.Filter

EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter

excitationFilterLink - Variable in class ome.model.acquisition.FilterSet

EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet

excitationFilterLink - Variable in class ome.model.acquisition.LightPath

EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath

EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter

EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.FilterSet

EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath

excitationWave - Variable in class ome.model.core.LogicalChannel

EXCITATIONWAVE - Static variable in class ome.model.core.LogicalChannel

exit(Object) - Method in class ome.util.ContextFilter

exp(long) - Method in class ome.parameters.Parameters

experiment - Variable in class ome.model.core.Image

EXPERIMENT - Static variable in class ome.model.core.Image

Experiment - Class in ome.model.experiment

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Experiment() - Constructor for class ome.model.experiment.Experiment

Experiment(Long) - Constructor for class ome.model.experiment.Experiment

Experiment(Long, boolean) - Constructor for class ome.model.experiment.Experiment

Main constructor.

Experiment(ExperimentType) - Constructor for class ome.model.experiment.Experiment

experiment - Variable in class ome.model.experiment.MicrobeamManipulation

EXPERIMENT - Static variable in class ome.model.experiment.MicrobeamManipulation

Experiment.Details - Class in ome.model.experiment

experimenter - Variable in class ome.model.meta.Event

EXPERIMENTER - Static variable in class ome.model.meta.Event

Experimenter - Class in ome.model.meta

Experimenter() - Constructor for class ome.model.meta.Experimenter

Experimenter(Long) - Constructor for class ome.model.meta.Experimenter

Experimenter(Long, boolean) - Constructor for class ome.model.meta.Experimenter

Main constructor.

Experimenter(String, String, String, Boolean) - Constructor for class ome.model.meta.Experimenter

Experimenter.Details - Class in ome.model.meta

ExperimenterAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ExperimenterAnnotationLink() - Constructor for class ome.model.annotations.ExperimenterAnnotationLink

ExperimenterAnnotationLink(Long) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink

ExperimenterAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink

Main constructor.

ExperimenterAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink

ExperimenterAnnotationLink.Details - Class in ome.model.annotations

experimenterGroup - Variable in class ome.model.meta.Event

EXPERIMENTERGROUP - Static variable in class ome.model.meta.Event

ExperimenterGroup - Class in ome.model.meta

ExperimenterGroup() - Constructor for class ome.model.meta.ExperimenterGroup

ExperimenterGroup(Long) - Constructor for class ome.model.meta.ExperimenterGroup

ExperimenterGroup(Long, boolean) - Constructor for class ome.model.meta.ExperimenterGroup

Main constructor.

ExperimenterGroup(String, Boolean) - Constructor for class ome.model.meta.ExperimenterGroup

ExperimenterGroup.Details - Class in ome.model.meta

ExperimenterGroupAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ExperimenterGroupAnnotationLink() - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink

ExperimenterGroupAnnotationLink(Long) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink

ExperimenterGroupAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink

Main constructor.

ExperimenterGroupAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink

ExperimenterGroupAnnotationLink.Details - Class in ome.model.annotations

ExperimentType - Class in ome.model.enums

ExperimentType() - Constructor for class ome.model.enums.ExperimentType

ExperimentType(Long) - Constructor for class ome.model.enums.ExperimentType

ExperimentType(Long, boolean) - Constructor for class ome.model.enums.ExperimentType

Main constructor.

ExperimentType(String) - Constructor for class ome.model.enums.ExperimentType

ExperimentType.Details - Class in ome.model.enums

ExpiredCredentialException - Exception in ome.conditions

Correct username and credentials provided, but credentials expired.

ExpiredCredentialException(String) - Constructor for exception ome.conditions.ExpiredCredentialException

exposureTime - Variable in class ome.model.core.PlaneInfo

EXPOSURETIME - Static variable in class ome.model.core.PlaneInfo

externalDescription - Variable in class ome.model.screen.Well

EXTERNALDESCRIPTION - Static variable in class ome.model.screen.Well

externalIdentifier - Variable in class ome.model.screen.Plate

EXTERNALIDENTIFIER - Static variable in class ome.model.screen.Plate

externalIdentifier - Variable in class ome.model.screen.Well

EXTERNALIDENTIFIER - Static variable in class ome.model.screen.Well

EXTERNALINFO - Static variable in class ome.model.internal.Details

ExternalInfo - Class in ome.model.meta

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ExternalInfo() - Constructor for class ome.model.meta.ExternalInfo

ExternalInfo(Long) - Constructor for class ome.model.meta.ExternalInfo

ExternalInfo(Long, boolean) - Constructor for class ome.model.meta.ExternalInfo

Main constructor.

ExternalInfo(Long, String) - Constructor for class ome.model.meta.ExternalInfo

ExternalInfo.Details - Class in ome.model.meta

F

family - Variable in class ome.model.display.ChannelBinding

FAMILY - Static variable in class ome.model.display.ChannelBinding

Family - Class in ome.model.enums

Family() - Constructor for class ome.model.enums.Family

Family(Long) - Constructor for class ome.model.enums.Family

Family(Long, boolean) - Constructor for class ome.model.enums.Family

Main constructor.

Family(String) - Constructor for class ome.model.enums.Family

Family.Details - Class in ome.model.enums

FIELDS - Static variable in class ome.model.acquisition.Arc

fields() - Method in class ome.model.acquisition.Arc

FIELDS - Static variable in class ome.model.acquisition.Detector

fields() - Method in class ome.model.acquisition.Detector

FIELDS - Static variable in class ome.model.acquisition.DetectorSettings

fields() - Method in class ome.model.acquisition.DetectorSettings

FIELDS - Static variable in class ome.model.acquisition.Dichroic

fields() - Method in class ome.model.acquisition.Dichroic

FIELDS - Static variable in class ome.model.acquisition.Filament

fields() - Method in class ome.model.acquisition.Filament

FIELDS - Static variable in class ome.model.acquisition.Filter

fields() - Method in class ome.model.acquisition.Filter

FIELDS - Static variable in class ome.model.acquisition.FilterSet

fields() - Method in class ome.model.acquisition.FilterSet

FIELDS - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink

fields() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

FIELDS - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink

fields() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

FIELDS - Static variable in class ome.model.acquisition.GenericExcitationSource

fields() - Method in class ome.model.acquisition.GenericExcitationSource

FIELDS - Static variable in class ome.model.acquisition.ImagingEnvironment

fields() - Method in class ome.model.acquisition.ImagingEnvironment

FIELDS - Static variable in class ome.model.acquisition.Instrument

fields() - Method in class ome.model.acquisition.Instrument

FIELDS - Static variable in class ome.model.acquisition.Laser

fields() - Method in class ome.model.acquisition.Laser

FIELDS - Static variable in class ome.model.acquisition.LightEmittingDiode

fields() - Method in class ome.model.acquisition.LightEmittingDiode

FIELDS - Static variable in class ome.model.acquisition.LightPath

fields() - Method in class ome.model.acquisition.LightPath

FIELDS - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink

fields() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

FIELDS - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink

fields() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

FIELDS - Static variable in class ome.model.acquisition.LightSettings

fields() - Method in class ome.model.acquisition.LightSettings

FIELDS - Static variable in class ome.model.acquisition.LightSource

fields() - Method in class ome.model.acquisition.LightSource

FIELDS - Static variable in class ome.model.acquisition.Microscope

fields() - Method in class ome.model.acquisition.Microscope

FIELDS - Static variable in class ome.model.acquisition.Objective

fields() - Method in class ome.model.acquisition.Objective

FIELDS - Static variable in class ome.model.acquisition.ObjectiveSettings

fields() - Method in class ome.model.acquisition.ObjectiveSettings

FIELDS - Static variable in class ome.model.acquisition.OTF

fields() - Method in class ome.model.acquisition.OTF

FIELDS - Static variable in class ome.model.acquisition.StageLabel

fields() - Method in class ome.model.acquisition.StageLabel

FIELDS - Static variable in class ome.model.acquisition.TransmittanceRange

fields() - Method in class ome.model.acquisition.TransmittanceRange

FIELDS - Static variable in class ome.model.annotations.Annotation

fields() - Method in class ome.model.annotations.Annotation

FIELDS - Static variable in class ome.model.annotations.AnnotationAnnotationLink

fields() - Method in class ome.model.annotations.AnnotationAnnotationLink

FIELDS - Static variable in class ome.model.annotations.BasicAnnotation

fields() - Method in class ome.model.annotations.BasicAnnotation

FIELDS - Static variable in class ome.model.annotations.BooleanAnnotation

fields() - Method in class ome.model.annotations.BooleanAnnotation

FIELDS - Static variable in class ome.model.annotations.ChannelAnnotationLink

fields() - Method in class ome.model.annotations.ChannelAnnotationLink

FIELDS - Static variable in class ome.model.annotations.CommentAnnotation

fields() - Method in class ome.model.annotations.CommentAnnotation

FIELDS - Static variable in class ome.model.annotations.DatasetAnnotationLink

fields() - Method in class ome.model.annotations.DatasetAnnotationLink

FIELDS - Static variable in class ome.model.annotations.DetectorAnnotationLink

fields() - Method in class ome.model.annotations.DetectorAnnotationLink

FIELDS - Static variable in class ome.model.annotations.DichroicAnnotationLink

fields() - Method in class ome.model.annotations.DichroicAnnotationLink

FIELDS - Static variable in class ome.model.annotations.DoubleAnnotation

fields() - Method in class ome.model.annotations.DoubleAnnotation

FIELDS - Static variable in class ome.model.annotations.ExperimenterAnnotationLink

fields() - Method in class ome.model.annotations.ExperimenterAnnotationLink

FIELDS - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

fields() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

FIELDS - Static variable in class ome.model.annotations.FileAnnotation

fields() - Method in class ome.model.annotations.FileAnnotation

FIELDS - Static variable in class ome.model.annotations.FilesetAnnotationLink

fields() - Method in class ome.model.annotations.FilesetAnnotationLink

FIELDS - Static variable in class ome.model.annotations.FilterAnnotationLink

fields() - Method in class ome.model.annotations.FilterAnnotationLink

FIELDS - Static variable in class ome.model.annotations.FolderAnnotationLink

fields() - Method in class ome.model.annotations.FolderAnnotationLink

FIELDS - Static variable in class ome.model.annotations.ImageAnnotationLink

fields() - Method in class ome.model.annotations.ImageAnnotationLink

FIELDS - Static variable in class ome.model.annotations.InstrumentAnnotationLink

fields() - Method in class ome.model.annotations.InstrumentAnnotationLink

FIELDS - Static variable in class ome.model.annotations.LightPathAnnotationLink

fields() - Method in class ome.model.annotations.LightPathAnnotationLink

FIELDS - Static variable in class ome.model.annotations.LightSourceAnnotationLink

fields() - Method in class ome.model.annotations.LightSourceAnnotationLink

FIELDS - Static variable in class ome.model.annotations.ListAnnotation

fields() - Method in class ome.model.annotations.ListAnnotation

FIELDS - Static variable in class ome.model.annotations.LongAnnotation

fields() - Method in class ome.model.annotations.LongAnnotation

FIELDS - Static variable in class ome.model.annotations.MapAnnotation

fields() - Method in class ome.model.annotations.MapAnnotation

FIELDS - Static variable in class ome.model.annotations.NamespaceAnnotationLink

fields() - Method in class ome.model.annotations.NamespaceAnnotationLink

FIELDS - Static variable in class ome.model.annotations.NodeAnnotationLink

fields() - Method in class ome.model.annotations.NodeAnnotationLink

FIELDS - Static variable in class ome.model.annotations.NumericAnnotation

fields() - Method in class ome.model.annotations.NumericAnnotation

FIELDS - Static variable in class ome.model.annotations.ObjectiveAnnotationLink

fields() - Method in class ome.model.annotations.ObjectiveAnnotationLink

FIELDS - Static variable in class ome.model.annotations.OriginalFileAnnotationLink

fields() - Method in class ome.model.annotations.OriginalFileAnnotationLink

FIELDS - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink

fields() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

FIELDS - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

fields() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

FIELDS - Static variable in class ome.model.annotations.PlateAnnotationLink

fields() - Method in class ome.model.annotations.PlateAnnotationLink

FIELDS - Static variable in class ome.model.annotations.ProjectAnnotationLink

fields() - Method in class ome.model.annotations.ProjectAnnotationLink

FIELDS - Static variable in class ome.model.annotations.ReagentAnnotationLink

fields() - Method in class ome.model.annotations.ReagentAnnotationLink

FIELDS - Static variable in class ome.model.annotations.RoiAnnotationLink

fields() - Method in class ome.model.annotations.RoiAnnotationLink

FIELDS - Static variable in class ome.model.annotations.ScreenAnnotationLink

fields() - Method in class ome.model.annotations.ScreenAnnotationLink

FIELDS - Static variable in class ome.model.annotations.SessionAnnotationLink

fields() - Method in class ome.model.annotations.SessionAnnotationLink

FIELDS - Static variable in class ome.model.annotations.ShapeAnnotationLink

fields() - Method in class ome.model.annotations.ShapeAnnotationLink

FIELDS - Static variable in class ome.model.annotations.TagAnnotation

fields() - Method in class ome.model.annotations.TagAnnotation

FIELDS - Static variable in class ome.model.annotations.TermAnnotation

fields() - Method in class ome.model.annotations.TermAnnotation

FIELDS - Static variable in class ome.model.annotations.TextAnnotation

fields() - Method in class ome.model.annotations.TextAnnotation

FIELDS - Static variable in class ome.model.annotations.TimestampAnnotation

fields() - Method in class ome.model.annotations.TimestampAnnotation

FIELDS - Static variable in class ome.model.annotations.TypeAnnotation

fields() - Method in class ome.model.annotations.TypeAnnotation

FIELDS - Static variable in class ome.model.annotations.WellAnnotationLink

fields() - Method in class ome.model.annotations.WellAnnotationLink

FIELDS - Static variable in class ome.model.annotations.XmlAnnotation

fields() - Method in class ome.model.annotations.XmlAnnotation

FIELDS - Static variable in class ome.model.containers.Dataset

fields() - Method in class ome.model.containers.Dataset

FIELDS - Static variable in class ome.model.containers.DatasetImageLink

fields() - Method in class ome.model.containers.DatasetImageLink

FIELDS - Static variable in class ome.model.containers.Folder

fields() - Method in class ome.model.containers.Folder

FIELDS - Static variable in class ome.model.containers.FolderImageLink

fields() - Method in class ome.model.containers.FolderImageLink

FIELDS - Static variable in class ome.model.containers.FolderRoiLink

fields() - Method in class ome.model.containers.FolderRoiLink

FIELDS - Static variable in class ome.model.containers.Project

fields() - Method in class ome.model.containers.Project

FIELDS - Static variable in class ome.model.containers.ProjectDatasetLink

fields() - Method in class ome.model.containers.ProjectDatasetLink

FIELDS - Static variable in class ome.model.core.Channel

fields() - Method in class ome.model.core.Channel

FIELDS - Static variable in class ome.model.core.Image

fields() - Method in class ome.model.core.Image

FIELDS - Static variable in class ome.model.core.LogicalChannel

fields() - Method in class ome.model.core.LogicalChannel

FIELDS - Static variable in class ome.model.core.OriginalFile

fields() - Method in class ome.model.core.OriginalFile

FIELDS - Static variable in class ome.model.core.Pixels

fields() - Method in class ome.model.core.Pixels

FIELDS - Static variable in class ome.model.core.PixelsOriginalFileMap

fields() - Method in class ome.model.core.PixelsOriginalFileMap

FIELDS - Static variable in class ome.model.core.PlaneInfo

fields() - Method in class ome.model.core.PlaneInfo

FIELDS - Static variable in class ome.model.display.ChannelBinding

fields() - Method in class ome.model.display.ChannelBinding

FIELDS - Static variable in class ome.model.display.CodomainMapContext

fields() - Method in class ome.model.display.CodomainMapContext

FIELDS - Static variable in class ome.model.display.ContrastStretchingContext

fields() - Method in class ome.model.display.ContrastStretchingContext

FIELDS - Static variable in class ome.model.display.PlaneSlicingContext

fields() - Method in class ome.model.display.PlaneSlicingContext

FIELDS - Static variable in class ome.model.display.ProjectionDef

fields() - Method in class ome.model.display.ProjectionDef

FIELDS - Static variable in class ome.model.display.QuantumDef

fields() - Method in class ome.model.display.QuantumDef

FIELDS - Static variable in class ome.model.display.RenderingDef

fields() - Method in class ome.model.display.RenderingDef

FIELDS - Static variable in class ome.model.display.ReverseIntensityContext

fields() - Method in class ome.model.display.ReverseIntensityContext

FIELDS - Static variable in class ome.model.display.Thumbnail

fields() - Method in class ome.model.display.Thumbnail

FIELDS - Static variable in class ome.model.enums.AcquisitionMode

fields() - Method in class ome.model.enums.AcquisitionMode

FIELDS - Static variable in class ome.model.enums.AdminPrivilege

fields() - Method in class ome.model.enums.AdminPrivilege

FIELDS - Static variable in class ome.model.enums.ArcType

fields() - Method in class ome.model.enums.ArcType

FIELDS - Static variable in class ome.model.enums.Binning

fields() - Method in class ome.model.enums.Binning

FIELDS - Static variable in class ome.model.enums.ChecksumAlgorithm

fields() - Method in class ome.model.enums.ChecksumAlgorithm

FIELDS - Static variable in class ome.model.enums.ContrastMethod

fields() - Method in class ome.model.enums.ContrastMethod

FIELDS - Static variable in class ome.model.enums.Correction

fields() - Method in class ome.model.enums.Correction

FIELDS - Static variable in class ome.model.enums.DetectorType

fields() - Method in class ome.model.enums.DetectorType

FIELDS - Static variable in class ome.model.enums.DimensionOrder

fields() - Method in class ome.model.enums.DimensionOrder

FIELDS - Static variable in class ome.model.enums.EventType

fields() - Method in class ome.model.enums.EventType

FIELDS - Static variable in class ome.model.enums.ExperimentType

fields() - Method in class ome.model.enums.ExperimentType

FIELDS - Static variable in class ome.model.enums.Family

fields() - Method in class ome.model.enums.Family

FIELDS - Static variable in class ome.model.enums.FilamentType

fields() - Method in class ome.model.enums.FilamentType

FIELDS - Static variable in class ome.model.enums.FilterType

fields() - Method in class ome.model.enums.FilterType

FIELDS - Static variable in class ome.model.enums.Format

fields() - Method in class ome.model.enums.Format

FIELDS - Static variable in class ome.model.enums.Illumination

fields() - Method in class ome.model.enums.Illumination

FIELDS - Static variable in class ome.model.enums.Immersion

fields() - Method in class ome.model.enums.Immersion

FIELDS - Static variable in class ome.model.enums.LaserMedium

fields() - Method in class ome.model.enums.LaserMedium

FIELDS - Static variable in class ome.model.enums.LaserType

fields() - Method in class ome.model.enums.LaserType

FIELDS - Static variable in class ome.model.enums.Medium

fields() - Method in class ome.model.enums.Medium

FIELDS - Static variable in class ome.model.enums.MicrobeamManipulationType

fields() - Method in class ome.model.enums.MicrobeamManipulationType

FIELDS - Static variable in class ome.model.enums.MicroscopeType

fields() - Method in class ome.model.enums.MicroscopeType

FIELDS - Static variable in class ome.model.enums.PhotometricInterpretation

fields() - Method in class ome.model.enums.PhotometricInterpretation

FIELDS - Static variable in class ome.model.enums.PixelsType

fields() - Method in class ome.model.enums.PixelsType

FIELDS - Static variable in class ome.model.enums.ProjectionAxis

fields() - Method in class ome.model.enums.ProjectionAxis

FIELDS - Static variable in class ome.model.enums.ProjectionType

fields() - Method in class ome.model.enums.ProjectionType

FIELDS - Static variable in class ome.model.enums.Pulse

fields() - Method in class ome.model.enums.Pulse

FIELDS - Static variable in class ome.model.enums.RenderingModel

fields() - Method in class ome.model.enums.RenderingModel

FIELDS - Static variable in class ome.model.experiment.Experiment

fields() - Method in class ome.model.experiment.Experiment

FIELDS - Static variable in class ome.model.experiment.MicrobeamManipulation

fields() - Method in class ome.model.experiment.MicrobeamManipulation

FIELDS - Static variable in class ome.model.fs.Fileset

fields() - Method in class ome.model.fs.Fileset

FIELDS - Static variable in class ome.model.fs.FilesetEntry

fields() - Method in class ome.model.fs.FilesetEntry

FIELDS - Static variable in class ome.model.fs.FilesetJobLink

fields() - Method in class ome.model.fs.FilesetJobLink

FIELDS - Static variable in class ome.model.internal.Link

fields() - Method in class ome.model.internal.Link

fields() - Method in interface ome.model.IObject

returns a Set of field names that belong to this class

FIELDS - Static variable in class ome.model.jobs.ImportJob

Deprecated.

fields() - Method in class ome.model.jobs.ImportJob

Deprecated.

FIELDS - Static variable in class ome.model.jobs.IndexingJob

fields() - Method in class ome.model.jobs.IndexingJob

FIELDS - Static variable in class ome.model.jobs.IntegrityCheckJob

fields() - Method in class ome.model.jobs.IntegrityCheckJob

FIELDS - Static variable in class ome.model.jobs.Job

fields() - Method in class ome.model.jobs.Job

FIELDS - Static variable in class ome.model.jobs.JobOriginalFileLink

fields() - Method in class ome.model.jobs.JobOriginalFileLink

FIELDS - Static variable in class ome.model.jobs.JobStatus

fields() - Method in class ome.model.jobs.JobStatus

FIELDS - Static variable in class ome.model.jobs.MetadataImportJob

fields() - Method in class ome.model.jobs.MetadataImportJob

FIELDS - Static variable in class ome.model.jobs.ParseJob

fields() - Method in class ome.model.jobs.ParseJob

FIELDS - Static variable in class ome.model.jobs.PixelDataJob

fields() - Method in class ome.model.jobs.PixelDataJob

FIELDS - Static variable in class ome.model.jobs.ScriptJob

fields() - Method in class ome.model.jobs.ScriptJob

FIELDS - Static variable in class ome.model.jobs.ThumbnailGenerationJob

fields() - Method in class ome.model.jobs.ThumbnailGenerationJob

FIELDS - Static variable in class ome.model.jobs.UploadJob

fields() - Method in class ome.model.jobs.UploadJob

FIELDS - Static variable in class ome.model.meta.DBPatch

fields() - Method in class ome.model.meta.DBPatch

FIELDS - Static variable in class ome.model.meta.Event

fields() - Method in class ome.model.meta.Event

FIELDS - Static variable in class ome.model.meta.EventLog

fields() - Method in class ome.model.meta.EventLog

FIELDS - Static variable in class ome.model.meta.Experimenter

fields() - Method in class ome.model.meta.Experimenter

FIELDS - Static variable in class ome.model.meta.ExperimenterGroup

fields() - Method in class ome.model.meta.ExperimenterGroup

FIELDS - Static variable in class ome.model.meta.ExternalInfo

fields() - Method in class ome.model.meta.ExternalInfo

FIELDS - Static variable in class ome.model.meta.GroupExperimenterMap

fields() - Method in class ome.model.meta.GroupExperimenterMap

FIELDS - Static variable in class ome.model.meta.Namespace

fields() - Method in class ome.model.meta.Namespace

FIELDS - Static variable in class ome.model.meta.Node

fields() - Method in class ome.model.meta.Node

FIELDS - Static variable in class ome.model.meta.Session

fields() - Method in class ome.model.meta.Session

FIELDS - Static variable in class ome.model.meta.Share

fields() - Method in class ome.model.meta.Share

FIELDS - Static variable in class ome.model.meta.ShareMember

fields() - Method in class ome.model.meta.ShareMember

FIELDS - Static variable in class ome.model.roi.AffineTransform

fields() - Method in class ome.model.roi.AffineTransform

FIELDS - Static variable in class ome.model.roi.Ellipse

fields() - Method in class ome.model.roi.Ellipse

FIELDS - Static variable in class ome.model.roi.Label

fields() - Method in class ome.model.roi.Label

FIELDS - Static variable in class ome.model.roi.Line

fields() - Method in class ome.model.roi.Line

FIELDS - Static variable in class ome.model.roi.Mask

fields() - Method in class ome.model.roi.Mask

FIELDS - Static variable in class ome.model.roi.Path

Deprecated.

fields() - Method in class ome.model.roi.Path

Deprecated.

FIELDS - Static variable in class ome.model.roi.Point

fields() - Method in class ome.model.roi.Point

FIELDS - Static variable in class ome.model.roi.Polygon

fields() - Method in class ome.model.roi.Polygon

FIELDS - Static variable in class ome.model.roi.Polyline

fields() - Method in class ome.model.roi.Polyline

FIELDS - Static variable in class ome.model.roi.Rectangle

fields() - Method in class ome.model.roi.Rectangle

FIELDS - Static variable in class ome.model.roi.Roi

fields() - Method in class ome.model.roi.Roi

FIELDS - Static variable in class ome.model.roi.Shape

fields() - Method in class ome.model.roi.Shape

FIELDS - Static variable in class ome.model.screen.Plate

fields() - Method in class ome.model.screen.Plate

FIELDS - Static variable in class ome.model.screen.PlateAcquisition

fields() - Method in class ome.model.screen.PlateAcquisition

FIELDS - Static variable in class ome.model.screen.Reagent

fields() - Method in class ome.model.screen.Reagent

FIELDS - Static variable in class ome.model.screen.Screen

fields() - Method in class ome.model.screen.Screen

FIELDS - Static variable in class ome.model.screen.ScreenPlateLink

fields() - Method in class ome.model.screen.ScreenPlateLink

FIELDS - Static variable in class ome.model.screen.Well

fields() - Method in class ome.model.screen.Well

FIELDS - Static variable in class ome.model.screen.WellReagentLink

fields() - Method in class ome.model.screen.WellReagentLink

FIELDS - Static variable in class ome.model.screen.WellSample

fields() - Method in class ome.model.screen.WellSample

FIELDS - Static variable in class ome.model.stats.StatsInfo

fields() - Method in class ome.model.stats.StatsInfo

fields() - Method in class ome.util.PermDetails

Filament - Class in ome.model.acquisition

Filament() - Constructor for class ome.model.acquisition.Filament

Filament(Long) - Constructor for class ome.model.acquisition.Filament

Filament(Long, boolean) - Constructor for class ome.model.acquisition.Filament

Main constructor.

Filament(FilamentType) - Constructor for class ome.model.acquisition.Filament

FilamentType - Class in ome.model.enums

FilamentType() - Constructor for class ome.model.enums.FilamentType

FilamentType(Long) - Constructor for class ome.model.enums.FilamentType

FilamentType(Long, boolean) - Constructor for class ome.model.enums.FilamentType

Main constructor.

FilamentType(String) - Constructor for class ome.model.enums.FilamentType

FilamentType.Details - Class in ome.model.enums

file - Variable in class ome.model.annotations.FileAnnotation

FILE - Static variable in class ome.model.annotations.FileAnnotation

FileAnnotation - Class in ome.model.annotations

FileAnnotation() - Constructor for class ome.model.annotations.FileAnnotation

FileAnnotation(Long) - Constructor for class ome.model.annotations.FileAnnotation

FileAnnotation(Long, boolean) - Constructor for class ome.model.annotations.FileAnnotation

Main constructor.

fileId - Variable in class ome.util.SqlAction.DeleteLog

fileIdsInDb(String, Set<String>) - Method in interface ome.util.SqlAction

Return all IDs matching the given mimetypes, or all IDs if mimetypes is null.

fileIdsInDb(String, Set<String>) - Method in class ome.util.SqlAction.Impl

fileRepo(long) - Method in interface ome.util.SqlAction

fileRepo(long) - Method in class ome.util.SqlAction.Impl

fileset - Variable in class ome.model.core.Image

FILESET - Static variable in class ome.model.core.Image

Fileset - Class in ome.model.fs

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Fileset() - Constructor for class ome.model.fs.Fileset

Fileset(Long) - Constructor for class ome.model.fs.Fileset

Fileset(Long, boolean) - Constructor for class ome.model.fs.Fileset

Main constructor.

Fileset(String) - Constructor for class ome.model.fs.Fileset

fileset - Variable in class ome.model.fs.FilesetEntry

FILESET - Static variable in class ome.model.fs.FilesetEntry

Fileset.Details - Class in ome.model.fs

FilesetAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

FilesetAnnotationLink() - Constructor for class ome.model.annotations.FilesetAnnotationLink

FilesetAnnotationLink(Long) - Constructor for class ome.model.annotations.FilesetAnnotationLink

FilesetAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FilesetAnnotationLink

Main constructor.

FilesetAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FilesetAnnotationLink

FilesetAnnotationLink.Details - Class in ome.model.annotations

filesetEntries - Variable in class ome.model.core.OriginalFile

FILESETENTRIES - Static variable in class ome.model.core.OriginalFile

FilesetEntry - Class in ome.model.fs

These filter definitions are used by the security system to eliminate non-readable objects from queries.

FilesetEntry() - Constructor for class ome.model.fs.FilesetEntry

FilesetEntry(Long) - Constructor for class ome.model.fs.FilesetEntry

FilesetEntry(Long, boolean) - Constructor for class ome.model.fs.FilesetEntry

Main constructor.

FilesetEntry(Fileset, OriginalFile, String) - Constructor for class ome.model.fs.FilesetEntry

FilesetEntry.Details - Class in ome.model.fs

FilesetJobLink - Class in ome.model.fs

These filter definitions are used by the security system to eliminate non-readable objects from queries.

FilesetJobLink() - Constructor for class ome.model.fs.FilesetJobLink

FilesetJobLink(Long) - Constructor for class ome.model.fs.FilesetJobLink

FilesetJobLink(Long, boolean) - Constructor for class ome.model.fs.FilesetJobLink

Main constructor.

FilesetJobLink(IObject, IObject) - Constructor for class ome.model.fs.FilesetJobLink

FilesetJobLink.Details - Class in ome.model.fs

fillColor - Variable in class ome.model.roi.Shape

FILLCOLOR - Static variable in class ome.model.roi.Shape

fillObject(ReverseModelMapper) - Method in interface ome.model.ModelBased

fillRule - Variable in class ome.model.roi.Shape

FILLRULE - Static variable in class ome.model.roi.Shape

Filter - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Filter() - Constructor for class ome.model.acquisition.Filter

Filter(Long) - Constructor for class ome.model.acquisition.Filter

Filter(Long, boolean) - Constructor for class ome.model.acquisition.Filter

Main constructor.

Filter(Instrument) - Constructor for class ome.model.acquisition.Filter

filter - Variable in class ome.model.acquisition.Instrument

FILTER - Static variable in class ome.model.acquisition.Instrument

Filter - Class in ome.parameters

parameter to generally reduce the size of a query result set.

Filter() - Constructor for class ome.parameters.Filter

filter(String, Filterable) - Method in class ome.util.ContextFilter

filter(String, Collection) - Method in class ome.util.ContextFilter

iterates over the contents of the collection and filters each.

filter(String, Map) - Method in class ome.util.ContextFilter

filters both the key and value sets of the map.

filter(String, Object) - Method in class ome.util.ContextFilter

used when type is unknown.

filter(String, ContextFilter.Entry) - Method in class ome.util.ContextFilter

doesn't return a new entry.

Filter - Interface in ome.util

marks objects which can be filtered using {see FIXME }.

filter(String, Filterable) - Method in interface ome.util.Filter

filter(String, Collection) - Method in interface ome.util.Filter

filter(String, Map) - Method in interface ome.util.Filter

filter(String, Object) - Method in interface ome.util.Filter

filter(String, Filterable) - Method in class ome.util.ModelMapper

filter(String, Collection) - Method in class ome.util.ModelMapper

filter(String, Map) - Method in class ome.util.ModelMapper

filter(String, Object) - Method in class ome.util.RdfPrinter

filter(String, Filterable) - Method in class ome.util.RdfPrinter

filter(String, Collection) - Method in class ome.util.RdfPrinter

Filter.Details - Class in ome.model.acquisition

Filterable - Interface in ome.util

marks objects which can be filtered using {see FIXME }.

FilterAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

FilterAnnotationLink() - Constructor for class ome.model.annotations.FilterAnnotationLink

FilterAnnotationLink(Long) - Constructor for class ome.model.annotations.FilterAnnotationLink

FilterAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FilterAnnotationLink

Main constructor.

FilterAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FilterAnnotationLink

FilterAnnotationLink.Details - Class in ome.model.annotations

FilteredFullAdmin() - Constructor for class ome.util.PrivilegedStringType.FilteredFullAdmin

FilteredFullAdmin() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdmin

FilteredFullAdminHidden() - Constructor for class ome.util.PrivilegedStringType.FilteredFullAdminHidden

FilteredFullAdminHidden() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdminHidden

FilteredFullAdminUUID() - Constructor for class ome.util.PrivilegedStringType.FilteredFullAdminUUID

FilteredFullAdminUUID() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdminUUID

FilteredRelatedUser() - Constructor for class ome.util.PrivilegedStringType.FilteredRelatedUser

FilteredRelatedUser() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredRelatedUser

FilteredRelatedUserHidden() - Constructor for class ome.util.PrivilegedStringType.FilteredRelatedUserHidden

FilteredRelatedUserHidden() - Constructor for class ome.util.PrivilegedStringTypeDescriptor.FilteredRelatedUserHidden

filteredSet() - Method in class ome.model.internal.Details

copy of the current collection of filtered names.

filteredSize() - Method in class ome.model.internal.Details

the count of collections which were filtered.

filterFileIdsByRepo(String, List<Long>) - Method in interface ome.util.SqlAction

Find the original file IDs among those given that are in the given repository.

filterFileIdsByRepo(String, List<Long>) - Method in class ome.util.SqlAction.Impl

FilterSet - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

FilterSet() - Constructor for class ome.model.acquisition.FilterSet

FilterSet(Long) - Constructor for class ome.model.acquisition.FilterSet

FilterSet(Long, boolean) - Constructor for class ome.model.acquisition.FilterSet

Main constructor.

FilterSet(Instrument) - Constructor for class ome.model.acquisition.FilterSet

filterSet - Variable in class ome.model.acquisition.Instrument

FILTERSET - Static variable in class ome.model.acquisition.Instrument

filterSet - Variable in class ome.model.acquisition.OTF

FILTERSET - Static variable in class ome.model.acquisition.OTF

filterSet - Variable in class ome.model.core.LogicalChannel

FILTERSET - Static variable in class ome.model.core.LogicalChannel

FilterSet.Details - Class in ome.model.acquisition

FilterSetEmissionFilterLink - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

FilterSetEmissionFilterLink() - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink

FilterSetEmissionFilterLink(Long) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink

FilterSetEmissionFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink

Main constructor.

FilterSetEmissionFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink

FilterSetEmissionFilterLink.Details - Class in ome.model.acquisition

FilterSetExcitationFilterLink - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

FilterSetExcitationFilterLink() - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink

FilterSetExcitationFilterLink(Long) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink

FilterSetExcitationFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink

Main constructor.

FilterSetExcitationFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink

FilterSetExcitationFilterLink.Details - Class in ome.model.acquisition

FilterType - Class in ome.model.enums

FilterType() - Constructor for class ome.model.enums.FilterType

FilterType(Long) - Constructor for class ome.model.enums.FilterType

FilterType(Long, boolean) - Constructor for class ome.model.enums.FilterType

Main constructor.

FilterType(String) - Constructor for class ome.model.enums.FilterType

FilterType.Details - Class in ome.model.enums

filterWheel - Variable in class ome.model.acquisition.Filter

FILTERWHEEL - Static variable in class ome.model.acquisition.Filter

findAnnotationAnnotationLink(Annotation) - Method in class ome.model.annotations.Annotation

find all ome.model.annotations.AnnotationAnnotationLink which have the argument as their child.

findChannelAnnotationLink(Annotation) - Method in class ome.model.core.Channel

find all ome.model.annotations.ChannelAnnotationLink which have the argument as their child.

findClass(Class) - Method in class ome.util.ModelMapper

findCollection(Collection) - Method in class ome.util.ModelMapper

findCollectionTarget(Object) - Method in class ome.util.ModelMapper

extension point which subclasses can override to better map the values of collections and maps.

findDatasetAnnotationLink(Annotation) - Method in class ome.model.containers.Dataset

find all ome.model.annotations.DatasetAnnotationLink which have the argument as their child.

findDatasetImageLink(Image) - Method in class ome.model.containers.Dataset

find all ome.model.containers.DatasetImageLink which have the argument as their child.

findDatasetImageLink(Dataset) - Method in class ome.model.core.Image

find all ome.model.containers.DatasetImageLink which have the argument as their parent.

findDetectorAnnotationLink(Annotation) - Method in class ome.model.acquisition.Detector

find all ome.model.annotations.DetectorAnnotationLink which have the argument as their child.

findDichroicAnnotationLink(Annotation) - Method in class ome.model.acquisition.Dichroic

find all ome.model.annotations.DichroicAnnotationLink which have the argument as their child.

findExperimenterAnnotationLink(Annotation) - Method in class ome.model.meta.Experimenter

find all ome.model.annotations.ExperimenterAnnotationLink which have the argument as their child.

findExperimenterGroupAnnotationLink(Annotation) - Method in class ome.model.meta.ExperimenterGroup

find all ome.model.annotations.ExperimenterGroupAnnotationLink which have the argument as their child.

findFilesetAnnotationLink(Annotation) - Method in class ome.model.fs.Fileset

find all ome.model.annotations.FilesetAnnotationLink which have the argument as their child.

findFilesetJobLink(Job) - Method in class ome.model.fs.Fileset

find all ome.model.fs.FilesetJobLink which have the argument as their child.

findFilterAnnotationLink(Annotation) - Method in class ome.model.acquisition.Filter

find all ome.model.annotations.FilterAnnotationLink which have the argument as their child.

findFilterSetEmissionFilterLink(FilterSet) - Method in class ome.model.acquisition.Filter

find all ome.model.acquisition.FilterSetEmissionFilterLink which have the argument as their parent.

findFilterSetEmissionFilterLink(Filter) - Method in class ome.model.acquisition.FilterSet

find all ome.model.acquisition.FilterSetEmissionFilterLink which have the argument as their child.

findFilterSetExcitationFilterLink(FilterSet) - Method in class ome.model.acquisition.Filter

find all ome.model.acquisition.FilterSetExcitationFilterLink which have the argument as their parent.

findFilterSetExcitationFilterLink(Filter) - Method in class ome.model.acquisition.FilterSet

find all ome.model.acquisition.FilterSetExcitationFilterLink which have the argument as their child.

findFolderAnnotationLink(Annotation) - Method in class ome.model.containers.Folder

find all ome.model.annotations.FolderAnnotationLink which have the argument as their child.

findFolderImageLink(Image) - Method in class ome.model.containers.Folder

find all ome.model.containers.FolderImageLink which have the argument as their child.

findFolderImageLink(Folder) - Method in class ome.model.core.Image

find all ome.model.containers.FolderImageLink which have the argument as their parent.

findFolderRoiLink(Roi) - Method in class ome.model.containers.Folder

find all ome.model.containers.FolderRoiLink which have the argument as their child.

findFolderRoiLink(Folder) - Method in class ome.model.roi.Roi

find all ome.model.containers.FolderRoiLink which have the argument as their parent.

findGroupExperimenterMap(ExperimenterGroup) - Method in class ome.model.meta.Experimenter

find all ome.model.meta.GroupExperimenterMap which have the argument as their parent.

findGroupExperimenterMap(Experimenter) - Method in class ome.model.meta.ExperimenterGroup

find all ome.model.meta.GroupExperimenterMap which have the argument as their child.

findImageAnnotationLink(Annotation) - Method in class ome.model.core.Image

find all ome.model.annotations.ImageAnnotationLink which have the argument as their child.

findInstrumentAnnotationLink(Annotation) - Method in class ome.model.acquisition.Instrument

find all ome.model.annotations.InstrumentAnnotationLink which have the argument as their child.

findJobOriginalFileLink(OriginalFile) - Method in class ome.model.jobs.Job

find all ome.model.jobs.JobOriginalFileLink which have the argument as their child.

findKeyTarget(Object) - Method in class ome.util.ModelMapper

extension point which subclasses can override to better map the keys of maps.

findLightPathAnnotationLink(Annotation) - Method in class ome.model.acquisition.LightPath

find all ome.model.annotations.LightPathAnnotationLink which have the argument as their child.

findLightPathEmissionFilterLink(Filter) - Method in class ome.model.acquisition.LightPath

find all ome.model.acquisition.LightPathEmissionFilterLink which have the argument as their child.

findLightPathExcitationFilterLink(Filter) - Method in class ome.model.acquisition.LightPath

find all ome.model.acquisition.LightPathExcitationFilterLink which have the argument as their child.

findLightSourceAnnotationLink(Annotation) - Method in class ome.model.acquisition.LightSource

find all ome.model.annotations.LightSourceAnnotationLink which have the argument as their child.

findMap(Map) - Method in class ome.util.ModelMapper

findNamespaceAnnotationLink(Annotation) - Method in class ome.model.meta.Namespace

find all ome.model.annotations.NamespaceAnnotationLink which have the argument as their child.

findNodeAnnotationLink(Annotation) - Method in class ome.model.meta.Node

find all ome.model.annotations.NodeAnnotationLink which have the argument as their child.

findObjectiveAnnotationLink(Annotation) - Method in class ome.model.acquisition.Objective

find all ome.model.annotations.ObjectiveAnnotationLink which have the argument as their child.

findOldAdminPrivileges() - Method in interface ome.util.SqlAction

Find the completed transactions among the current light administrator privileges.

findOldAdminPrivileges() - Method in class ome.util.SqlAction.Impl

findOriginalFileAnnotationLink(Annotation) - Method in class ome.model.core.OriginalFile

find all ome.model.annotations.OriginalFileAnnotationLink which have the argument as their child.

findPixelsOriginalFileMap(Pixels) - Method in class ome.model.core.OriginalFile

find all ome.model.core.PixelsOriginalFileMap which have the argument as their child.

findPixelsOriginalFileMap(OriginalFile) - Method in class ome.model.core.Pixels

find all ome.model.core.PixelsOriginalFileMap which have the argument as their parent.

findPlaneInfoAnnotationLink(Annotation) - Method in class ome.model.core.PlaneInfo

find all ome.model.annotations.PlaneInfoAnnotationLink which have the argument as their child.

findPlateAcquisitionAnnotationLink(Annotation) - Method in class ome.model.screen.PlateAcquisition

find all ome.model.annotations.PlateAcquisitionAnnotationLink which have the argument as their child.

findPlateAnnotationLink(Annotation) - Method in class ome.model.screen.Plate

find all ome.model.annotations.PlateAnnotationLink which have the argument as their child.

findProjectAnnotationLink(Annotation) - Method in class ome.model.containers.Project

find all ome.model.annotations.ProjectAnnotationLink which have the argument as their child.

findProjectDatasetLink(Project) - Method in class ome.model.containers.Dataset

find all ome.model.containers.ProjectDatasetLink which have the argument as their parent.

findProjectDatasetLink(Dataset) - Method in class ome.model.containers.Project

find all ome.model.containers.ProjectDatasetLink which have the argument as their child.

findReagentAnnotationLink(Annotation) - Method in class ome.model.screen.Reagent

find all ome.model.annotations.ReagentAnnotationLink which have the argument as their child.

findRepoDeleteLogs(SqlAction.DeleteLog) - Method in interface ome.util.SqlAction

Find all SqlAction.DeleteLog entries which match all of the non-null fields provided in the template.

findRepoDeleteLogs(SqlAction.DeleteLog) - Method in class ome.util.SqlAction.Impl

findRepoFile(String, String, String) - Method in interface ome.util.SqlAction

Calls SqlAction.findRepoFile(String, String, String, Set) passing null.

findRepoFile(String, String, String, String) - Method in interface ome.util.SqlAction

Calls SqlAction.findRepoFile(String, String, String, Set)

findRepoFile(String, String, String, Set<String>) - Method in interface ome.util.SqlAction

Lookup the id of an OriginalFile in a given repository or return null if none is found.

findRepoFile(String, String, String) - Method in class ome.util.SqlAction.Impl

findRepoFile(String, String, String, String) - Method in class ome.util.SqlAction.Impl

findRepoFile(String, String, String, Set<String>) - Method in class ome.util.SqlAction.Impl

findRepoFilePath(String, long) - Method in interface ome.util.SqlAction

findRepoFilePath(String, long) - Method in class ome.util.SqlAction.Impl

findRepoFiles(String, String, List<String>, Set<String>) - Method in interface ome.util.SqlAction

Like SqlAction.findRepoFile(String, String, String, Set), but queries in bulk and returns a map for the found IDs.

findRepoFiles(String, String) - Method in interface ome.util.SqlAction

Return a list of original file ids that all have a path value matching the passed dirname in the given repository.

findRepoFiles(String, String, List<String>, Set<String>) - Method in class ome.util.SqlAction.Impl

findRepoFiles(String, String) - Method in class ome.util.SqlAction.Impl

findRepoImageFromPixels(long) - Method in class ome.util.actions.PostgresSqlAction

findRepoImageFromPixels(long) - Method in interface ome.util.SqlAction

findRepoPixels(String, String, String) - Method in class ome.util.actions.PostgresSqlAction

findRepoPixels(String, String, String) - Method in interface ome.util.SqlAction

findRepoRootPath(String) - Method in interface ome.util.SqlAction

Find the path of the repository root.

findRepoRootPath(String) - Method in class ome.util.SqlAction.Impl

findRoiAnnotationLink(Annotation) - Method in class ome.model.roi.Roi

find all ome.model.annotations.RoiAnnotationLink which have the argument as their child.

findScreenAnnotationLink(Annotation) - Method in class ome.model.screen.Screen

find all ome.model.annotations.ScreenAnnotationLink which have the argument as their child.

findScreenPlateLink(Screen) - Method in class ome.model.screen.Plate

find all ome.model.screen.ScreenPlateLink which have the argument as their parent.

findScreenPlateLink(Plate) - Method in class ome.model.screen.Screen

find all ome.model.screen.ScreenPlateLink which have the argument as their child.

findSessionAnnotationLink(Annotation) - Method in class ome.model.meta.Session

find all ome.model.annotations.SessionAnnotationLink which have the argument as their child.

findShapeAnnotationLink(Annotation) - Method in class ome.model.roi.Shape

find all ome.model.annotations.ShapeAnnotationLink which have the argument as their child.

findTarget(Object) - Method in class ome.util.ModelMapper

known immutables are return unchanged.

findWellAnnotationLink(Annotation) - Method in class ome.model.screen.Well

find all ome.model.annotations.WellAnnotationLink which have the argument as their child.

findWellReagentLink(Well) - Method in class ome.model.screen.Reagent

find all ome.model.screen.WellReagentLink which have the argument as their parent.

findWellReagentLink(Reagent) - Method in class ome.model.screen.Well

find all ome.model.screen.WellReagentLink which have the argument as their child.

finished - Variable in class ome.model.jobs.Job

FINISHED - Static variable in class ome.model.jobs.Job

finished - Variable in class ome.model.meta.DBPatch

FINISHED - Static variable in class ome.model.meta.DBPatch

firstName - Variable in class ome.model.meta.Experimenter

FIRSTNAME - Static variable in class ome.model.meta.Experimenter

FLOAT - Static variable in class ome.util.PixelData

Identifies the type used to store pixel values.

fluor - Variable in class ome.model.core.LogicalChannel

FLUOR - Static variable in class ome.model.core.LogicalChannel

Folder - Class in ome.model.containers

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Folder() - Constructor for class ome.model.containers.Folder

Folder(Long) - Constructor for class ome.model.containers.Folder

Folder(Long, boolean) - Constructor for class ome.model.containers.Folder

Main constructor.

Folder(String) - Constructor for class ome.model.containers.Folder

Folder.Details - Class in ome.model.containers

FolderAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

FolderAnnotationLink() - Constructor for class ome.model.annotations.FolderAnnotationLink

FolderAnnotationLink(Long) - Constructor for class ome.model.annotations.FolderAnnotationLink

FolderAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FolderAnnotationLink

Main constructor.

FolderAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FolderAnnotationLink

FolderAnnotationLink.Details - Class in ome.model.annotations

FolderImageLink - Class in ome.model.containers

These filter definitions are used by the security system to eliminate non-readable objects from queries.

FolderImageLink() - Constructor for class ome.model.containers.FolderImageLink

FolderImageLink(Long) - Constructor for class ome.model.containers.FolderImageLink

FolderImageLink(Long, boolean) - Constructor for class ome.model.containers.FolderImageLink

Main constructor.

FolderImageLink(IObject, IObject) - Constructor for class ome.model.containers.FolderImageLink

FolderImageLink.Details - Class in ome.model.containers

folderLinks - Variable in class ome.model.core.Image

FOLDERLINKS - Static variable in class ome.model.core.Image

folderLinks - Variable in class ome.model.roi.Roi

FOLDERLINKS - Static variable in class ome.model.roi.Roi

FOLDERLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image

FOLDERLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Roi

FolderRoiLink - Class in ome.model.containers

These filter definitions are used by the security system to eliminate non-readable objects from queries.

FolderRoiLink() - Constructor for class ome.model.containers.FolderRoiLink

FolderRoiLink(Long) - Constructor for class ome.model.containers.FolderRoiLink

FolderRoiLink(Long, boolean) - Constructor for class ome.model.containers.FolderRoiLink

Main constructor.

FolderRoiLink(IObject, IObject) - Constructor for class ome.model.containers.FolderRoiLink

FolderRoiLink.Details - Class in ome.model.containers

fontFamily - Variable in class ome.model.roi.Shape

FONTFAMILY - Static variable in class ome.model.roi.Shape

fontSize - Variable in class ome.model.roi.Shape

FONTSIZE - Static variable in class ome.model.roi.Shape

fontStyle - Variable in class ome.model.roi.Shape

FONTSTYLE - Static variable in class ome.model.roi.Shape

format - Variable in class ome.model.core.Image

FORMAT - Static variable in class ome.model.core.Image

Format - Class in ome.model.enums

Format() - Constructor for class ome.model.enums.Format

Format(Long) - Constructor for class ome.model.enums.Format

Format(Long, boolean) - Constructor for class ome.model.enums.Format

Main constructor.

Format(String) - Constructor for class ome.model.enums.Format

Format.Details - Class in ome.model.enums

Frequency - Class in ome.model.units

class storing both a Frequency and a unit for that Frequency (e.g.

Frequency() - Constructor for class ome.model.units.Frequency

Deprecated.

Frequency(double, String) - Constructor for class ome.model.units.Frequency

Frequency(double, UnitsFrequency) - Constructor for class ome.model.units.Frequency

Frequency(double, Unit<Frequency>) - Constructor for class ome.model.units.Frequency

Frequency(Frequency) - Constructor for class ome.model.units.Frequency

frequencyMultiplication - Variable in class ome.model.acquisition.Laser

FREQUENCYMULTIPLICATION - Static variable in class ome.model.acquisition.Laser

fromdbvalue(String) - Method in enum ome.model.units.UNITS

Perform the reverse lookup from todbvalue(Object) converting the DB's enums which contain invalid characters to the upper-cased CODE-based enums used elsewhere.

G

gain - Variable in class ome.model.acquisition.Detector

GAIN - Static variable in class ome.model.acquisition.Detector

gain - Variable in class ome.model.acquisition.DetectorSettings

GAIN - Static variable in class ome.model.acquisition.DetectorSettings

generate(SessionImplementor, Object) - Method in class ome.util.TableIdGenerator

GenericEnumType<E extends java.lang.Enum<E>> - Class in ome.model.units

http://octagen.at/2014/10/postgresql-custom-data-types-enum-in-hibernate/

GenericEnumType() - Constructor for class ome.model.units.GenericEnumType

GenericExcitationSource - Class in ome.model.acquisition

GenericExcitationSource() - Constructor for class ome.model.acquisition.GenericExcitationSource

GenericExcitationSource(Long) - Constructor for class ome.model.acquisition.GenericExcitationSource

GenericExcitationSource(Long, boolean) - Constructor for class ome.model.acquisition.GenericExcitationSource

Main constructor.

get(String) - Method in class ome.parameters.Parameters

lookup a QueryParameter by name.

getA00() - Method in class ome.model.roi.AffineTransform

Simple field ome.model.roi.AffineTransform.a00 (java.lang.Double)

getA01() - Method in class ome.model.roi.AffineTransform

Simple field ome.model.roi.AffineTransform.a01 (java.lang.Double)

getA02() - Method in class ome.model.roi.AffineTransform

Simple field ome.model.roi.AffineTransform.a02 (java.lang.Double)

getA10() - Method in class ome.model.roi.AffineTransform

Simple field ome.model.roi.AffineTransform.a10 (java.lang.Double)

getA11() - Method in class ome.model.roi.AffineTransform

Simple field ome.model.roi.AffineTransform.a11 (java.lang.Double)

getA12() - Method in class ome.model.roi.AffineTransform

Simple field ome.model.roi.AffineTransform.a12 (java.lang.Double)

getAcquisitionDate() - Method in class ome.model.core.Image

Simple field ome.model.core.Image.acquisitionDate (java.sql.Timestamp)

getAction() - Method in class ome.model.meta.EventLog

Simple field ome.model.meta.EventLog.action (java.lang.String)

getActive() - Method in class ome.model.display.ChannelBinding

Simple field ome.model.display.ChannelBinding.active (java.lang.Boolean)

getActive() - Method in class ome.model.display.ProjectionDef

Simple field ome.model.display.ProjectionDef.active (java.lang.Boolean)

getActive() - Method in class ome.model.meta.Share

Simple field ome.model.meta.Share.active (java.lang.Boolean)

getAirPressure() - Method in class ome.model.acquisition.ImagingEnvironment

Enum-mapped unit-based field ome.model.acquisition.ImagingEnvironment.airPressure (ome.model.units.Pressure)

getAlpha() - Method in class ome.model.core.Channel

Simple field ome.model.core.Channel.alpha (java.lang.Integer)

getAlpha() - Method in class ome.model.display.ChannelBinding

Simple field ome.model.display.ChannelBinding.alpha (java.lang.Integer)

getAlpha() - Method in class ome.model.screen.Well

Simple field ome.model.screen.Well.alpha (java.lang.Integer)

getAmplificationGain() - Method in class ome.model.acquisition.Detector

Simple field ome.model.acquisition.Detector.amplificationGain (java.lang.Double)

getAnnotationLinks() - Method in class ome.model.acquisition.Detector

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.acquisition.Dichroic

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.acquisition.Filter

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.acquisition.Instrument

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.acquisition.LightPath

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.acquisition.LightSource

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.acquisition.Objective

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.annotations.Annotation

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.containers.Dataset

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.containers.Folder

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.containers.Project

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.core.Channel

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.core.Image

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.core.OriginalFile

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.core.PlaneInfo

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.fs.Fileset

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.meta.Experimenter

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.meta.Namespace

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.meta.Node

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.meta.Session

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.roi.Roi

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.roi.Shape

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.screen.Plate

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.screen.Reagent

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.screen.Screen

returns annotationLinks .

getAnnotationLinks() - Method in class ome.model.screen.Well

returns annotationLinks .

getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Detector

If fetched, returns the count(*) of ome.model.annotations.DetectorAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Dichroic

If fetched, returns the count(*) of ome.model.annotations.DichroicAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Filter

If fetched, returns the count(*) of ome.model.annotations.FilterAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Instrument

If fetched, returns the count(*) of ome.model.annotations.InstrumentAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.LightPath

If fetched, returns the count(*) of ome.model.annotations.LightPathAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.LightSource

If fetched, returns the count(*) of ome.model.annotations.LightSourceAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Objective

If fetched, returns the count(*) of ome.model.annotations.ObjectiveAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.annotations.Annotation

If fetched, returns the count(*) of ome.model.annotations.AnnotationAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Dataset

If fetched, returns the count(*) of ome.model.annotations.DatasetAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Folder

If fetched, returns the count(*) of ome.model.annotations.FolderAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Project

If fetched, returns the count(*) of ome.model.annotations.ProjectAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.core.Channel

If fetched, returns the count(*) of ome.model.annotations.ChannelAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.core.Image

If fetched, returns the count(*) of ome.model.annotations.ImageAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.core.OriginalFile

If fetched, returns the count(*) of ome.model.annotations.OriginalFileAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.core.PlaneInfo

If fetched, returns the count(*) of ome.model.annotations.PlaneInfoAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.fs.Fileset

If fetched, returns the count(*) of ome.model.annotations.FilesetAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Experimenter

If fetched, returns the count(*) of ome.model.annotations.ExperimenterAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.ExperimenterGroup

If fetched, returns the count(*) of ome.model.annotations.ExperimenterGroupAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Namespace

If fetched, returns the count(*) of ome.model.annotations.NamespaceAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Node

If fetched, returns the count(*) of ome.model.annotations.NodeAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Session

If fetched, returns the count(*) of ome.model.annotations.SessionAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.roi.Roi

If fetched, returns the count(*) of ome.model.annotations.RoiAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.roi.Shape

If fetched, returns the count(*) of ome.model.annotations.ShapeAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Plate

If fetched, returns the count(*) of ome.model.annotations.PlateAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.PlateAcquisition

If fetched, returns the count(*) of ome.model.annotations.PlateAcquisitionAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Reagent

If fetched, returns the count(*) of ome.model.annotations.ReagentAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Screen

If fetched, returns the count(*) of ome.model.annotations.ScreenAnnotationLink that a user has.

getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Well

If fetched, returns the count(*) of ome.model.annotations.WellAnnotationLink that a user has.

getArchived() - Method in class ome.model.core.Image

Simple field ome.model.core.Image.archived (java.lang.Boolean)

getAtime() - Method in class ome.model.core.OriginalFile

Simple field ome.model.core.OriginalFile.atime (java.sql.Timestamp)

getAttenuation() - Method in class ome.model.acquisition.LightSettings

Simple field ome.model.acquisition.LightSettings.attenuation (java.lang.Double)

getAxis() - Method in class ome.model.display.ProjectionDef

Many-to-one field ome.model.display.ProjectionDef.axis (ome.model.enums.ProjectionAxis)

getBinning() - Method in class ome.model.acquisition.DetectorSettings

Many-to-one field ome.model.acquisition.DetectorSettings.binning (ome.model.enums.Binning)

getBitDepth(String) - Static method in class ome.util.PixelData

Retrieves the bit width of a particular PixelsType.

getBitResolution() - Method in class ome.model.display.QuantumDef

Simple field ome.model.display.QuantumDef.bitResolution (java.lang.Integer)

getBitSize() - Method in class ome.model.enums.PixelsType

Simple field ome.model.enums.PixelsType.bitSize (java.lang.Integer)

getBlue() - Method in class ome.model.core.Channel

Simple field ome.model.core.Channel.blue (java.lang.Integer)

getBlue() - Method in class ome.model.display.ChannelBinding

Simple field ome.model.display.ChannelBinding.blue (java.lang.Integer)

getBlue() - Method in class ome.model.screen.Well

Simple field ome.model.screen.Well.blue (java.lang.Integer)

getBoolValue() - Method in class ome.model.annotations.BooleanAnnotation

Simple field ome.model.annotations.BooleanAnnotation.boolValue (java.lang.Boolean)

getBytes() - Method in class ome.model.roi.Mask

Simple field ome.model.roi.Mask.bytes (byte[])

getCalibratedMagnification() - Method in class ome.model.acquisition.Objective

Simple field ome.model.acquisition.Objective.calibratedMagnification (java.lang.Double)

getCdEnd() - Method in class ome.model.display.QuantumDef

Simple field ome.model.display.QuantumDef.cdEnd (java.lang.Integer)

getCdStart() - Method in class ome.model.display.QuantumDef

Simple field ome.model.display.QuantumDef.cdStart (java.lang.Integer)

getChannel(int) - Method in class ome.model.core.Pixels

Gets the ome.model.core.Channel at the given index.

getChannelBinding() - Method in class ome.model.display.CodomainMapContext

Many-to-one field ome.model.display.CodomainMapContext.channelBinding (ome.model.display.ChannelBinding)

getChannelBinding(int) - Method in class ome.model.display.RenderingDef

Gets the ome.model.display.ChannelBinding at the given index.

getChannels() - Method in class ome.model.core.LogicalChannel

returns channels .

getChannels() - Method in class ome.model.core.Pixels

returns channels .

getChild() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

Many-to-one field ome.model.acquisition.FilterSetEmissionFilterLink.child (ome.model.acquisition.Filter)

getChild() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

Many-to-one field ome.model.acquisition.FilterSetExcitationFilterLink.child (ome.model.acquisition.Filter)

getChild() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

Many-to-one field ome.model.acquisition.LightPathEmissionFilterLink.child (ome.model.acquisition.Filter)

getChild() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

Many-to-one field ome.model.acquisition.LightPathExcitationFilterLink.child (ome.model.acquisition.Filter)

getChild() - Method in class ome.model.annotations.AnnotationAnnotationLink

Many-to-one field ome.model.annotations.AnnotationAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.ChannelAnnotationLink

Many-to-one field ome.model.annotations.ChannelAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.DatasetAnnotationLink

Many-to-one field ome.model.annotations.DatasetAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.DetectorAnnotationLink

Many-to-one field ome.model.annotations.DetectorAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.DichroicAnnotationLink

Many-to-one field ome.model.annotations.DichroicAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.ExperimenterAnnotationLink

Many-to-one field ome.model.annotations.ExperimenterAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

Many-to-one field ome.model.annotations.ExperimenterGroupAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.FilesetAnnotationLink

Many-to-one field ome.model.annotations.FilesetAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.FilterAnnotationLink

Many-to-one field ome.model.annotations.FilterAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.FolderAnnotationLink

Many-to-one field ome.model.annotations.FolderAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.ImageAnnotationLink

Many-to-one field ome.model.annotations.ImageAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.InstrumentAnnotationLink

Many-to-one field ome.model.annotations.InstrumentAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.LightPathAnnotationLink

Many-to-one field ome.model.annotations.LightPathAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.LightSourceAnnotationLink

Many-to-one field ome.model.annotations.LightSourceAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.NamespaceAnnotationLink

Many-to-one field ome.model.annotations.NamespaceAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.NodeAnnotationLink

Many-to-one field ome.model.annotations.NodeAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.ObjectiveAnnotationLink

Many-to-one field ome.model.annotations.ObjectiveAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.OriginalFileAnnotationLink

Many-to-one field ome.model.annotations.OriginalFileAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

Many-to-one field ome.model.annotations.PlaneInfoAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

Many-to-one field ome.model.annotations.PlateAcquisitionAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.PlateAnnotationLink

Many-to-one field ome.model.annotations.PlateAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.ProjectAnnotationLink

Many-to-one field ome.model.annotations.ProjectAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.ReagentAnnotationLink

Many-to-one field ome.model.annotations.ReagentAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.RoiAnnotationLink

Many-to-one field ome.model.annotations.RoiAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.ScreenAnnotationLink

Many-to-one field ome.model.annotations.ScreenAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.SessionAnnotationLink

Many-to-one field ome.model.annotations.SessionAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.ShapeAnnotationLink

Many-to-one field ome.model.annotations.ShapeAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.annotations.WellAnnotationLink

Many-to-one field ome.model.annotations.WellAnnotationLink.child (ome.model.annotations.Annotation)

getChild() - Method in class ome.model.containers.DatasetImageLink

Many-to-one field ome.model.containers.DatasetImageLink.child (ome.model.core.Image)

getChild() - Method in class ome.model.containers.FolderImageLink

Many-to-one field ome.model.containers.FolderImageLink.child (ome.model.core.Image)

getChild() - Method in class ome.model.containers.FolderRoiLink

Many-to-one field ome.model.containers.FolderRoiLink.child (ome.model.roi.Roi)

getChild() - Method in class ome.model.containers.ProjectDatasetLink

Many-to-one field ome.model.containers.ProjectDatasetLink.child (ome.model.containers.Dataset)

getChild() - Method in class ome.model.core.PixelsOriginalFileMap

Many-to-one field ome.model.core.PixelsOriginalFileMap.child (ome.model.core.Pixels)

getChild() - Method in class ome.model.fs.FilesetJobLink

Many-to-one field ome.model.fs.FilesetJobLink.child (ome.model.jobs.Job)

getChild() - Method in interface ome.model.ILink

getChild() - Method in class ome.model.jobs.JobOriginalFileLink

Many-to-one field ome.model.jobs.JobOriginalFileLink.child (ome.model.core.OriginalFile)

getChild() - Method in class ome.model.meta.GroupExperimenterMap

Many-to-one field ome.model.meta.GroupExperimenterMap.child (ome.model.meta.Experimenter)

getChild() - Method in class ome.model.meta.ShareMember

Many-to-one field ome.model.meta.ShareMember.child (ome.model.meta.Experimenter)

getChild() - Method in class ome.model.screen.ScreenPlateLink

Many-to-one field ome.model.screen.ScreenPlateLink.child (ome.model.screen.Plate)

getChild() - Method in class ome.model.screen.WellReagentLink

Many-to-one field ome.model.screen.WellReagentLink.child (ome.model.screen.Reagent)

getChildFolders() - Method in class ome.model.containers.Folder

returns childFolders .

getClientPath() - Method in class ome.model.fs.FilesetEntry

Simple field ome.model.fs.FilesetEntry.clientPath (java.lang.String)

getClosed() - Method in class ome.model.meta.Session

Simple field ome.model.meta.Session.closed (java.sql.Timestamp)

getCo2percent() - Method in class ome.model.acquisition.ImagingEnvironment

Simple field ome.model.acquisition.ImagingEnvironment.co2percent (java.lang.Double)

getCodomainMapContext(int) - Method in class ome.model.display.ChannelBinding

Gets the ome.model.display.CodomainMapContext at the given index.

getCoefficient() - Method in class ome.model.display.ChannelBinding

Simple field ome.model.display.ChannelBinding.coefficient (java.lang.Double)

getColumn() - Method in class ome.model.screen.Well

Simple field ome.model.screen.Well.column (java.lang.Integer)

getColumnNamingConvention() - Method in class ome.model.screen.Plate

Simple field ome.model.screen.Plate.columnNamingConvention (java.lang.String)

getColumns() - Method in class ome.model.screen.Plate

Simple field ome.model.screen.Plate.columns (java.lang.Integer)

getCompression() - Method in class ome.model.display.RenderingDef

Simple field ome.model.display.RenderingDef.compression (java.lang.Double)

getConfig() - Method in class ome.model.meta.Experimenter

getConfig() - Method in class ome.model.meta.ExperimenterGroup

getConn() - Method in class ome.model.meta.Node

Simple field ome.model.meta.Node.conn (java.lang.String)

getConstant() - Method in class ome.model.display.PlaneSlicingContext

Simple field ome.model.display.PlaneSlicingContext.constant (java.lang.Boolean)

getContainingEvent() - Method in class ome.model.meta.Event

Many-to-one field ome.model.meta.Event.containingEvent (ome.model.meta.Event)

getContext() - Method in class ome.model.internal.Details

reference to the entity which this Details is contained in.

getContrastMethod() - Method in class ome.model.core.LogicalChannel

Many-to-one field ome.model.core.LogicalChannel.contrastMethod (ome.model.enums.ContrastMethod)

getCorrection() - Method in class ome.model.acquisition.Objective

Many-to-one field ome.model.acquisition.Objective.correction (ome.model.enums.Correction)

getCorrectionCollar() - Method in class ome.model.acquisition.ObjectiveSettings

Simple field ome.model.acquisition.ObjectiveSettings.correctionCollar (java.lang.Double)

getCreationEvent() - Method in class ome.model.acquisition.Detector.Details

getCreationEvent() - Method in class ome.model.acquisition.DetectorSettings.Details

getCreationEvent() - Method in class ome.model.acquisition.Dichroic.Details

getCreationEvent() - Method in class ome.model.acquisition.Filter.Details

getCreationEvent() - Method in class ome.model.acquisition.FilterSet.Details

getCreationEvent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details

getCreationEvent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details

getCreationEvent() - Method in class ome.model.acquisition.ImagingEnvironment.Details

getCreationEvent() - Method in class ome.model.acquisition.Instrument.Details

getCreationEvent() - Method in class ome.model.acquisition.LightPath.Details

getCreationEvent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details

getCreationEvent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details

getCreationEvent() - Method in class ome.model.acquisition.LightSettings.Details

getCreationEvent() - Method in class ome.model.acquisition.LightSource.Details

getCreationEvent() - Method in class ome.model.acquisition.Microscope.Details

getCreationEvent() - Method in class ome.model.acquisition.Objective.Details

getCreationEvent() - Method in class ome.model.acquisition.ObjectiveSettings.Details

getCreationEvent() - Method in class ome.model.acquisition.OTF.Details

getCreationEvent() - Method in class ome.model.acquisition.StageLabel.Details

getCreationEvent() - Method in class ome.model.acquisition.TransmittanceRange.Details

getCreationEvent() - Method in class ome.model.annotations.Annotation.Details

getCreationEvent() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.ChannelAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.DatasetAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.DetectorAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.DichroicAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.FilesetAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.FilterAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.FolderAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.ImageAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.LightPathAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.NodeAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.PlateAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.ProjectAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.ReagentAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.RoiAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.ScreenAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.SessionAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.ShapeAnnotationLink.Details

getCreationEvent() - Method in class ome.model.annotations.WellAnnotationLink.Details

getCreationEvent() - Method in class ome.model.containers.Dataset.Details

getCreationEvent() - Method in class ome.model.containers.DatasetImageLink.Details

getCreationEvent() - Method in class ome.model.containers.Folder.Details

getCreationEvent() - Method in class ome.model.containers.FolderImageLink.Details

getCreationEvent() - Method in class ome.model.containers.FolderRoiLink.Details

getCreationEvent() - Method in class ome.model.containers.Project.Details

getCreationEvent() - Method in class ome.model.containers.ProjectDatasetLink.Details

getCreationEvent() - Method in class ome.model.core.Channel.Details

getCreationEvent() - Method in class ome.model.core.Image.Details

getCreationEvent() - Method in class ome.model.core.LogicalChannel.Details

getCreationEvent() - Method in class ome.model.core.OriginalFile.Details

getCreationEvent() - Method in class ome.model.core.Pixels.Details

getCreationEvent() - Method in class ome.model.core.PixelsOriginalFileMap.Details

getCreationEvent() - Method in class ome.model.core.PlaneInfo.Details

getCreationEvent() - Method in class ome.model.display.ChannelBinding.Details

getCreationEvent() - Method in class ome.model.display.CodomainMapContext.Details

getCreationEvent() - Method in class ome.model.display.ProjectionDef.Details

getCreationEvent() - Method in class ome.model.display.QuantumDef.Details

getCreationEvent() - Method in class ome.model.display.RenderingDef.Details

getCreationEvent() - Method in class ome.model.display.Thumbnail.Details

getCreationEvent() - Method in class ome.model.experiment.Experiment.Details

getCreationEvent() - Method in class ome.model.experiment.MicrobeamManipulation.Details

getCreationEvent() - Method in class ome.model.fs.Fileset.Details

getCreationEvent() - Method in class ome.model.fs.FilesetEntry.Details

getCreationEvent() - Method in class ome.model.fs.FilesetJobLink.Details

getCreationEvent() - Method in interface ome.model.IDetails

getCreationEvent() - Method in class ome.model.internal.Details

getCreationEvent() - Method in class ome.model.internal.Link.Details

getCreationEvent() - Method in class ome.model.jobs.Job.Details

getCreationEvent() - Method in class ome.model.jobs.JobOriginalFileLink.Details

getCreationEvent() - Method in class ome.model.meta.ExternalInfo.Details

getCreationEvent() - Method in class ome.model.roi.AffineTransform.Details

getCreationEvent() - Method in class ome.model.roi.Roi.Details

getCreationEvent() - Method in class ome.model.roi.Shape.Details

getCreationEvent() - Method in class ome.model.screen.Plate.Details

getCreationEvent() - Method in class ome.model.screen.PlateAcquisition.Details

getCreationEvent() - Method in class ome.model.screen.Reagent.Details

getCreationEvent() - Method in class ome.model.screen.Screen.Details

getCreationEvent() - Method in class ome.model.screen.ScreenPlateLink.Details

getCreationEvent() - Method in class ome.model.screen.Well.Details

getCreationEvent() - Method in class ome.model.screen.WellReagentLink.Details

getCreationEvent() - Method in class ome.model.screen.WellSample.Details

getCreationEvent() - Method in class ome.model.stats.StatsInfo.Details

getCtime() - Method in class ome.model.core.OriginalFile

Simple field ome.model.core.OriginalFile.ctime (java.sql.Timestamp)

getCurrentPatch() - Method in class ome.model.meta.DBPatch

Simple field ome.model.meta.DBPatch.currentPatch (java.lang.Integer)

getCurrentVersion() - Method in class ome.model.meta.DBPatch

Simple field ome.model.meta.DBPatch.currentVersion (java.lang.String)

getCutIn() - Method in class ome.model.acquisition.TransmittanceRange

Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutIn (ome.model.units.Length)

getCutInTolerance() - Method in class ome.model.acquisition.TransmittanceRange

Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutInTolerance (ome.model.units.Length)

getCutOut() - Method in class ome.model.acquisition.TransmittanceRange

Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutOut (ome.model.units.Length)

getCutOutTolerance() - Method in class ome.model.acquisition.TransmittanceRange

Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutOutTolerance (ome.model.units.Length)

getD() - Method in class ome.model.roi.Path

Deprecated.

Simple field ome.model.roi.Path.d (java.lang.String)

getData() - Method in class ome.model.meta.Share

Simple field ome.model.meta.Share.data (byte[])

getData() - Method in class ome.util.PixelData

Returns the backing buffer for the pixel data.

getDatasetLinks() - Method in class ome.model.containers.Project

returns datasetLinks .

getDatasetLinks() - Method in class ome.model.core.Image

returns datasetLinks .

getDatasetLinksCountPerOwner() - Method in class ome.model.containers.Project

If fetched, returns the count(*) of ome.model.containers.ProjectDatasetLink that a user has.

getDatasetLinksCountPerOwner() - Method in class ome.model.core.Image

If fetched, returns the count(*) of ome.model.containers.DatasetImageLink that a user has.

getDefaultEventType() - Method in class ome.model.meta.Session

Simple field ome.model.meta.Session.defaultEventType (java.lang.String)

getDefaultSample() - Method in class ome.model.screen.Plate

Simple field ome.model.screen.Plate.defaultSample (java.lang.Integer)

getDefaultT() - Method in class ome.model.display.RenderingDef

Simple field ome.model.display.RenderingDef.defaultT (java.lang.Integer)

getDefaultZ() - Method in class ome.model.display.RenderingDef

Simple field ome.model.display.RenderingDef.defaultZ (java.lang.Integer)

getDeletedIds(String) - Method in class ome.util.actions.PostgresSqlAction

getDeletedIds(String) - Method in interface ome.util.SqlAction

getDeltaT() - Method in class ome.model.core.PlaneInfo

Enum-mapped unit-based field ome.model.core.PlaneInfo.deltaT (ome.model.units.Time)

getDescription() - Method in class ome.model.annotations.Annotation

Simple field ome.model.annotations.Annotation.description (java.lang.String)

getDescription() - Method in class ome.model.containers.Dataset

Simple field ome.model.containers.Dataset.description (java.lang.String)

getDescription() - Method in class ome.model.containers.Folder

Simple field ome.model.containers.Folder.description (java.lang.String)

getDescription() - Method in class ome.model.containers.Project

Simple field ome.model.containers.Project.description (java.lang.String)

getDescription() - Method in class ome.model.core.Image

Simple field ome.model.core.Image.description (java.lang.String)

getDescription() - Method in class ome.model.experiment.Experiment

Simple field ome.model.experiment.Experiment.description (java.lang.String)

getDescription() - Method in class ome.model.experiment.MicrobeamManipulation

Simple field ome.model.experiment.MicrobeamManipulation.description (java.lang.String)

getDescription() - Method in class ome.model.jobs.ScriptJob

Simple field ome.model.jobs.ScriptJob.description (java.lang.String)

getDescription() - Method in class ome.model.meta.ExperimenterGroup

Simple field ome.model.meta.ExperimenterGroup.description (java.lang.String)

getDescription() - Method in class ome.model.meta.Namespace

Simple field ome.model.meta.Namespace.description (java.lang.String)

getDescription() - Method in class ome.model.roi.Roi

Simple field ome.model.roi.Roi.description (java.lang.String)

getDescription() - Method in class ome.model.screen.Plate

Simple field ome.model.screen.Plate.description (java.lang.String)

getDescription() - Method in class ome.model.screen.PlateAcquisition

Simple field ome.model.screen.PlateAcquisition.description (java.lang.String)

getDescription() - Method in class ome.model.screen.Reagent

Simple field ome.model.screen.Reagent.description (java.lang.String)

getDescription() - Method in class ome.model.screen.Screen

Simple field ome.model.screen.Screen.description (java.lang.String)

getDetails() - Method in class ome.model.acquisition.Detector

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.DetectorSettings

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.Dichroic

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.Filter

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.FilterSet

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.ImagingEnvironment

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.Instrument

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.LightPath

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.LightSettings

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.LightSource

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.Microscope

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.Objective

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.ObjectiveSettings

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.OTF

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.StageLabel

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.acquisition.TransmittanceRange

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.Annotation

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.AnnotationAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.ChannelAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.DatasetAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.DetectorAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.DichroicAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.ExperimenterAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.FilesetAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.FilterAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.FolderAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.ImageAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.InstrumentAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.LightPathAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.LightSourceAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.NamespaceAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.NodeAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.ObjectiveAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.OriginalFileAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.PlateAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.ProjectAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.ReagentAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.RoiAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.ScreenAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.SessionAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.ShapeAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.annotations.WellAnnotationLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.containers.Dataset

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.containers.DatasetImageLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.containers.Folder

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.containers.FolderImageLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.containers.FolderRoiLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.containers.Project

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.containers.ProjectDatasetLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.core.Channel

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.core.Image

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.core.LogicalChannel

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.core.OriginalFile

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.core.Pixels

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.core.PixelsOriginalFileMap

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.core.PlaneInfo

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.display.ChannelBinding

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.display.CodomainMapContext

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.display.ProjectionDef

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.display.QuantumDef

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.display.RenderingDef

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.display.Thumbnail

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.AcquisitionMode

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.AdminPrivilege

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.ArcType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.Binning

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.ChecksumAlgorithm

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.ContrastMethod

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.Correction

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.DetectorType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.DimensionOrder

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.EventType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.ExperimentType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.Family

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.FilamentType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.FilterType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.Format

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.Illumination

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.Immersion

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.LaserMedium

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.LaserType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.Medium

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.MicrobeamManipulationType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.MicroscopeType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.PhotometricInterpretation

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.PixelsType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.ProjectionAxis

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.ProjectionType

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.Pulse

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.enums.RenderingModel

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.experiment.Experiment

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.experiment.MicrobeamManipulation

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.fs.Fileset

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.fs.FilesetEntry

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.fs.FilesetJobLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.internal.Link

The details of this object correspond to low-level system information.

getDetails() - Method in interface ome.model.IObject

Value (i.e.

getDetails() - Method in class ome.model.jobs.Job

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.jobs.JobOriginalFileLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.jobs.JobStatus

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.DBPatch

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.Event

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.EventLog

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.Experimenter

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.ExperimenterGroup

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.ExternalInfo

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.GroupExperimenterMap

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.Namespace

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.Node

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.Session

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.meta.ShareMember

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.roi.AffineTransform

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.roi.Roi

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.roi.Shape

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.screen.Plate

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.screen.PlateAcquisition

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.screen.Reagent

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.screen.Screen

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.screen.ScreenPlateLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.screen.Well

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.screen.WellReagentLink

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.screen.WellSample

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.model.stats.StatsInfo

The details of this object correspond to low-level system information.

getDetails() - Method in class ome.util.PermDetails

getDetector() - Method in class ome.model.acquisition.DetectorSettings

Many-to-one field ome.model.acquisition.DetectorSettings.detector (ome.model.acquisition.Detector)

getDetector() - Method in class ome.model.acquisition.Instrument

returns detector .

getDetectorSettings() - Method in class ome.model.core.LogicalChannel

Many-to-one field ome.model.core.LogicalChannel.detectorSettings (ome.model.acquisition.DetectorSettings)

getDichroic() - Method in class ome.model.acquisition.FilterSet

Many-to-one field ome.model.acquisition.FilterSet.dichroic (ome.model.acquisition.Dichroic)

getDichroic() - Method in class ome.model.acquisition.Instrument

returns dichroic .

getDichroic() - Method in class ome.model.acquisition.LightPath

Many-to-one field ome.model.acquisition.LightPath.dichroic (ome.model.acquisition.Dichroic)

getDimensionOrder() - Method in class ome.model.core.Pixels

Many-to-one field ome.model.core.Pixels.dimensionOrder (ome.model.enums.DimensionOrder)

getDisplay() - Method in class ome.model.meta.Namespace

Simple field ome.model.meta.Namespace.display (java.lang.Boolean)

getDisplayName() - Method in class ome.model.meta.Namespace

Simple field ome.model.meta.Namespace.displayName (java.lang.String)

getDoubleValue() - Method in class ome.model.annotations.DoubleAnnotation

Simple field ome.model.annotations.DoubleAnnotation.doubleValue (java.lang.Double)

getDown() - Method in class ome.model.meta.Node

Simple field ome.model.meta.Node.down (java.sql.Timestamp)

getEmail() - Method in class ome.model.meta.Experimenter

Simple field ome.model.meta.Experimenter.email (java.lang.String)

getEmissionFilterLink() - Method in class ome.model.acquisition.Filter

returns emissionFilterLink .

getEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet

returns emissionFilterLink .

getEmissionFilterLink() - Method in class ome.model.acquisition.LightPath

returns emissionFilterLink .

getEmissionFilterLinkCountPerOwner() - Method in class ome.model.acquisition.Filter

If fetched, returns the count(*) of ome.model.acquisition.FilterSetEmissionFilterLink that a user has.

getEmissionFilterLinkCountPerOwner() - Method in class ome.model.acquisition.FilterSet

If fetched, returns the count(*) of ome.model.acquisition.FilterSetEmissionFilterLink that a user has.

getEmissionFilterLinkCountPerOwner() - Method in class ome.model.acquisition.LightPath

If fetched, returns the count(*) of ome.model.acquisition.LightPathEmissionFilterLink that a user has.

getEmissionWave() - Method in class ome.model.core.LogicalChannel

Enum-mapped unit-based field ome.model.core.LogicalChannel.emissionWave (ome.model.units.Length)

getEndPlane() - Method in class ome.model.display.ProjectionDef

Simple field ome.model.display.ProjectionDef.endPlane (java.lang.Integer)

getEndTime() - Method in class ome.model.screen.PlateAcquisition

Simple field ome.model.screen.PlateAcquisition.endTime (java.sql.Timestamp)

getEndTime() - Method in class ome.parameters.Parameters

getEntityId() - Method in class ome.model.meta.EventLog

Simple field ome.model.meta.EventLog.entityId (java.lang.Long)

getEntityId() - Method in class ome.model.meta.ExternalInfo

Simple field ome.model.meta.ExternalInfo.entityId (java.lang.Long)

getEntityType() - Method in class ome.model.meta.EventLog

Simple field ome.model.meta.EventLog.entityType (java.lang.String)

getEntityType() - Method in class ome.model.meta.ExternalInfo

Simple field ome.model.meta.ExternalInfo.entityType (java.lang.String)

getEvent() - Method in class ome.model.meta.EventLog

Many-to-one field ome.model.meta.EventLog.event (ome.model.meta.Event)

getEventLogPartitions(Collection<String>, Collection<String>, long, long) - Method in interface ome.util.SqlAction

Loads up to "limit" event logs using partioning so that only the last event log of a particular (type, id) pair is returned.

getEventLogPartitions(Collection<String>, Collection<String>, long, long) - Method in class ome.util.SqlAction.Impl

getEventLogPercent(String) - Method in interface ome.util.SqlAction

Returns the percent (e.g.

getEventLogPercent(String) - Method in class ome.util.SqlAction.Impl

getEvents() - Method in class ome.model.meta.Session

returns events .

getExcitationFilterLink() - Method in class ome.model.acquisition.Filter

returns excitationFilterLink .

getExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet

returns excitationFilterLink .

getExcitationFilterLink() - Method in class ome.model.acquisition.LightPath

returns excitationFilterLink .

getExcitationFilterLinkCountPerOwner() - Method in class ome.model.acquisition.Filter

If fetched, returns the count(*) of ome.model.acquisition.FilterSetExcitationFilterLink that a user has.

getExcitationFilterLinkCountPerOwner() - Method in class ome.model.acquisition.FilterSet

If fetched, returns the count(*) of ome.model.acquisition.FilterSetExcitationFilterLink that a user has.

getExcitationFilterLinkCountPerOwner() - Method in class ome.model.acquisition.LightPath

If fetched, returns the count(*) of ome.model.acquisition.LightPathExcitationFilterLink that a user has.

getExcitationWave() - Method in class ome.model.core.LogicalChannel

Enum-mapped unit-based field ome.model.core.LogicalChannel.excitationWave (ome.model.units.Length)

getExperiment() - Method in class ome.model.core.Image

Many-to-one field ome.model.core.Image.experiment (ome.model.experiment.Experiment)

getExperiment() - Method in class ome.model.experiment.MicrobeamManipulation

Many-to-one field ome.model.experiment.MicrobeamManipulation.experiment (ome.model.experiment.Experiment)

getExperimenter() - Method in class ome.model.meta.Event

Many-to-one field ome.model.meta.Event.experimenter (ome.model.meta.Experimenter)

getExperimenter() - Method in class ome.parameters.Parameters

Fulfills the old PojoOptions requirement for returning null if no owner set.

getExperimenterGroup() - Method in class ome.model.meta.Event

Many-to-one field ome.model.meta.Event.experimenterGroup (ome.model.meta.ExperimenterGroup)

getExposureTime() - Method in class ome.model.core.PlaneInfo

Enum-mapped unit-based field ome.model.core.PlaneInfo.exposureTime (ome.model.units.Time)

getExternalDescription() - Method in class ome.model.screen.Well

Simple field ome.model.screen.Well.externalDescription (java.lang.String)

getExternalIdentifier() - Method in class ome.model.screen.Plate

Simple field ome.model.screen.Plate.externalIdentifier (java.lang.String)

getExternalIdentifier() - Method in class ome.model.screen.Well

Simple field ome.model.screen.Well.externalIdentifier (java.lang.String)

getExternalInfo() - Method in class ome.model.acquisition.Detector.Details

getExternalInfo() - Method in class ome.model.acquisition.DetectorSettings.Details

getExternalInfo() - Method in class ome.model.acquisition.Dichroic.Details

getExternalInfo() - Method in class ome.model.acquisition.Filter.Details

getExternalInfo() - Method in class ome.model.acquisition.FilterSet.Details

getExternalInfo() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details

getExternalInfo() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details

getExternalInfo() - Method in class ome.model.acquisition.ImagingEnvironment.Details

getExternalInfo() - Method in class ome.model.acquisition.Instrument.Details

getExternalInfo() - Method in class ome.model.acquisition.LightPath.Details

getExternalInfo() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details

getExternalInfo() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details

getExternalInfo() - Method in class ome.model.acquisition.LightSettings.Details

getExternalInfo() - Method in class ome.model.acquisition.LightSource.Details

getExternalInfo() - Method in class ome.model.acquisition.Microscope.Details

getExternalInfo() - Method in class ome.model.acquisition.Objective.Details

getExternalInfo() - Method in class ome.model.acquisition.ObjectiveSettings.Details

getExternalInfo() - Method in class ome.model.acquisition.OTF.Details

getExternalInfo() - Method in class ome.model.acquisition.StageLabel.Details

getExternalInfo() - Method in class ome.model.acquisition.TransmittanceRange.Details

getExternalInfo() - Method in class ome.model.annotations.Annotation.Details

getExternalInfo() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.ChannelAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.DatasetAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.DetectorAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.DichroicAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.FilesetAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.FilterAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.FolderAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.ImageAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.LightPathAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.NodeAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.PlateAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.ProjectAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.ReagentAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.RoiAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.ScreenAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.SessionAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.ShapeAnnotationLink.Details

getExternalInfo() - Method in class ome.model.annotations.WellAnnotationLink.Details

getExternalInfo() - Method in class ome.model.containers.Dataset.Details

getExternalInfo() - Method in class ome.model.containers.DatasetImageLink.Details

getExternalInfo() - Method in class ome.model.containers.Folder.Details

getExternalInfo() - Method in class ome.model.containers.FolderImageLink.Details

getExternalInfo() - Method in class ome.model.containers.FolderRoiLink.Details

getExternalInfo() - Method in class ome.model.containers.Project.Details

getExternalInfo() - Method in class ome.model.containers.ProjectDatasetLink.Details

getExternalInfo() - Method in class ome.model.core.Channel.Details

getExternalInfo() - Method in class ome.model.core.Image.Details

getExternalInfo() - Method in class ome.model.core.LogicalChannel.Details

getExternalInfo() - Method in class ome.model.core.OriginalFile.Details

getExternalInfo() - Method in class ome.model.core.Pixels.Details

getExternalInfo() - Method in class ome.model.core.PixelsOriginalFileMap.Details

getExternalInfo() - Method in class ome.model.core.PlaneInfo.Details

getExternalInfo() - Method in class ome.model.display.ChannelBinding.Details

getExternalInfo() - Method in class ome.model.display.CodomainMapContext.Details

getExternalInfo() - Method in class ome.model.display.ProjectionDef.Details

getExternalInfo() - Method in class ome.model.display.QuantumDef.Details

getExternalInfo() - Method in class ome.model.display.RenderingDef.Details

getExternalInfo() - Method in class ome.model.display.Thumbnail.Details

getExternalInfo() - Method in class ome.model.enums.AcquisitionMode.Details

getExternalInfo() - Method in class ome.model.enums.AdminPrivilege.Details

getExternalInfo() - Method in class ome.model.enums.ArcType.Details

getExternalInfo() - Method in class ome.model.enums.Binning.Details

getExternalInfo() - Method in class ome.model.enums.ChecksumAlgorithm.Details

getExternalInfo() - Method in class ome.model.enums.ContrastMethod.Details

getExternalInfo() - Method in class ome.model.enums.Correction.Details

getExternalInfo() - Method in class ome.model.enums.DetectorType.Details

getExternalInfo() - Method in class ome.model.enums.DimensionOrder.Details

getExternalInfo() - Method in class ome.model.enums.EventType.Details

getExternalInfo() - Method in class ome.model.enums.ExperimentType.Details

getExternalInfo() - Method in class ome.model.enums.Family.Details

getExternalInfo() - Method in class ome.model.enums.FilamentType.Details

getExternalInfo() - Method in class ome.model.enums.FilterType.Details

getExternalInfo() - Method in class ome.model.enums.Format.Details

getExternalInfo() - Method in class ome.model.enums.Illumination.Details

getExternalInfo() - Method in class ome.model.enums.Immersion.Details

getExternalInfo() - Method in class ome.model.enums.LaserMedium.Details

getExternalInfo() - Method in class ome.model.enums.LaserType.Details

getExternalInfo() - Method in class ome.model.enums.Medium.Details

getExternalInfo() - Method in class ome.model.enums.MicrobeamManipulationType.Details

getExternalInfo() - Method in class ome.model.enums.MicroscopeType.Details

getExternalInfo() - Method in class ome.model.enums.PhotometricInterpretation.Details

getExternalInfo() - Method in class ome.model.enums.PixelsType.Details

getExternalInfo() - Method in class ome.model.enums.ProjectionAxis.Details

getExternalInfo() - Method in class ome.model.enums.ProjectionType.Details

getExternalInfo() - Method in class ome.model.enums.Pulse.Details

getExternalInfo() - Method in class ome.model.enums.RenderingModel.Details

getExternalInfo() - Method in class ome.model.experiment.Experiment.Details

getExternalInfo() - Method in class ome.model.experiment.MicrobeamManipulation.Details

getExternalInfo() - Method in class ome.model.fs.Fileset.Details

getExternalInfo() - Method in class ome.model.fs.FilesetEntry.Details

getExternalInfo() - Method in class ome.model.fs.FilesetJobLink.Details

getExternalInfo() - Method in class ome.model.internal.Details

getExternalInfo() - Method in class ome.model.internal.Link.Details

getExternalInfo() - Method in class ome.model.jobs.Job.Details

getExternalInfo() - Method in class ome.model.jobs.JobOriginalFileLink.Details

getExternalInfo() - Method in class ome.model.jobs.JobStatus.Details

getExternalInfo() - Method in class ome.model.meta.DBPatch.Details

getExternalInfo() - Method in class ome.model.meta.Event.Details

getExternalInfo() - Method in class ome.model.meta.EventLog.Details

getExternalInfo() - Method in class ome.model.meta.Experimenter.Details

getExternalInfo() - Method in class ome.model.meta.ExperimenterGroup.Details

getExternalInfo() - Method in class ome.model.meta.ExternalInfo.Details

getExternalInfo() - Method in class ome.model.meta.GroupExperimenterMap.Details

getExternalInfo() - Method in class ome.model.meta.Namespace.Details

getExternalInfo() - Method in class ome.model.meta.Node.Details

getExternalInfo() - Method in class ome.model.meta.Session.Details

getExternalInfo() - Method in class ome.model.meta.ShareMember.Details

getExternalInfo() - Method in class ome.model.roi.AffineTransform.Details

getExternalInfo() - Method in class ome.model.roi.Roi.Details

getExternalInfo() - Method in class ome.model.roi.Shape.Details

getExternalInfo() - Method in class ome.model.screen.Plate.Details

getExternalInfo() - Method in class ome.model.screen.PlateAcquisition.Details

getExternalInfo() - Method in class ome.model.screen.Reagent.Details

getExternalInfo() - Method in class ome.model.screen.Screen.Details

getExternalInfo() - Method in class ome.model.screen.ScreenPlateLink.Details

getExternalInfo() - Method in class ome.model.screen.Well.Details

getExternalInfo() - Method in class ome.model.screen.WellReagentLink.Details

getExternalInfo() - Method in class ome.model.screen.WellSample.Details

getExternalInfo() - Method in class ome.model.stats.StatsInfo.Details

getFamily() - Method in class ome.model.display.ChannelBinding

Many-to-one field ome.model.display.ChannelBinding.family (ome.model.enums.Family)

getFile() - Method in class ome.model.annotations.FileAnnotation

Many-to-one field ome.model.annotations.FileAnnotation.file (ome.model.core.OriginalFile)

getFileset() - Method in class ome.model.core.Image

Many-to-one field ome.model.core.Image.fileset (ome.model.fs.Fileset)

getFileset() - Method in class ome.model.fs.FilesetEntry

Many-to-one field ome.model.fs.FilesetEntry.fileset (ome.model.fs.Fileset)

getFilesetEntries() - Method in class ome.model.core.OriginalFile

returns filesetEntries .

getFilesetEntry(int) - Method in class ome.model.fs.Fileset

Gets the ome.model.fs.FilesetEntry at the given index.

getFilesetJobLink(int) - Method in class ome.model.fs.Fileset

Gets the ome.model.fs.FilesetJobLink at the given index.

getFillColor() - Method in class ome.model.roi.Shape

Simple field ome.model.roi.Shape.fillColor (java.lang.Integer)

getFillRule() - Method in class ome.model.roi.Shape

Simple field ome.model.roi.Shape.fillRule (java.lang.String)

getFilter() - Method in class ome.model.acquisition.Instrument

returns filter .

getFilter() - Method in class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdmin

getFilter() - Method in class ome.util.PrivilegedStringTypeDescriptor.FilteredRelatedUser

getFilter() - Method in class ome.util.PrivilegedStringTypeDescriptor

getFilterFailure() - Method in class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdminHidden

getFilterFailure() - Method in class ome.util.PrivilegedStringTypeDescriptor.FilteredFullAdminUUID

getFilterFailure() - Method in class ome.util.PrivilegedStringTypeDescriptor.FilteredRelatedUserHidden

getFilterFailure() - Method in class ome.util.PrivilegedStringTypeDescriptor

getFilterSet() - Method in class ome.model.acquisition.Instrument

returns filterSet .

getFilterSet() - Method in class ome.model.acquisition.OTF

Many-to-one field ome.model.acquisition.OTF.filterSet (ome.model.acquisition.FilterSet)

getFilterSet() - Method in class ome.model.core.LogicalChannel

Many-to-one field ome.model.core.LogicalChannel.filterSet (ome.model.acquisition.FilterSet)

getFilterWheel() - Method in class ome.model.acquisition.Filter

Simple field ome.model.acquisition.Filter.filterWheel (java.lang.String)

getFinished() - Method in class ome.model.jobs.Job

Simple field ome.model.jobs.Job.finished (java.sql.Timestamp)

getFinished() - Method in class ome.model.meta.DBPatch

Simple field ome.model.meta.DBPatch.finished (java.sql.Timestamp)

getFirstName() - Method in class ome.model.meta.Experimenter

Simple field ome.model.meta.Experimenter.firstName (java.lang.String)

getFluor() - Method in class ome.model.core.LogicalChannel

Simple field ome.model.core.LogicalChannel.fluor (java.lang.String)

getFolderLinks() - Method in class ome.model.core.Image

returns folderLinks .

getFolderLinks() - Method in class ome.model.roi.Roi

returns folderLinks .

getFolderLinksCountPerOwner() - Method in class ome.model.core.Image

If fetched, returns the count(*) of ome.model.containers.FolderImageLink that a user has.

getFolderLinksCountPerOwner() - Method in class ome.model.roi.Roi

If fetched, returns the count(*) of ome.model.containers.FolderRoiLink that a user has.

getFontFamily() - Method in class ome.model.roi.Shape

Simple field ome.model.roi.Shape.fontFamily (java.lang.String)

getFontSize() - Method in class ome.model.roi.Shape

Enum-mapped unit-based field ome.model.roi.Shape.fontSize (ome.model.units.Length)

getFontStyle() - Method in class ome.model.roi.Shape

Simple field ome.model.roi.Shape.fontStyle (java.lang.String)

getFormat() - Method in class ome.model.core.Image

Many-to-one field ome.model.core.Image.format (ome.model.enums.Format)

getFrequencyMultiplication() - Method in class ome.model.acquisition.Laser

Simple field ome.model.acquisition.Laser.frequencyMultiplication (java.lang.Integer)

getGain() - Method in class ome.model.acquisition.Detector

Simple field ome.model.acquisition.Detector.gain (java.lang.Double)

getGain() - Method in class ome.model.acquisition.DetectorSettings

Simple field ome.model.acquisition.DetectorSettings.gain (java.lang.Double)

getGlobalMax() - Method in class ome.model.stats.StatsInfo

Simple field ome.model.stats.StatsInfo.globalMax (java.lang.Double)

getGlobalMin() - Method in class ome.model.stats.StatsInfo

Simple field ome.model.stats.StatsInfo.globalMin (java.lang.Double)

getGraphHolder() - Method in class ome.model.acquisition.Detector

getGraphHolder() - Method in class ome.model.acquisition.DetectorSettings

getGraphHolder() - Method in class ome.model.acquisition.Dichroic

getGraphHolder() - Method in class ome.model.acquisition.Filter

getGraphHolder() - Method in class ome.model.acquisition.FilterSet

getGraphHolder() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

getGraphHolder() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

getGraphHolder() - Method in class ome.model.acquisition.ImagingEnvironment

getGraphHolder() - Method in class ome.model.acquisition.Instrument

getGraphHolder() - Method in class ome.model.acquisition.LightPath

getGraphHolder() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

getGraphHolder() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

getGraphHolder() - Method in class ome.model.acquisition.LightSettings

getGraphHolder() - Method in class ome.model.acquisition.LightSource

getGraphHolder() - Method in class ome.model.acquisition.Microscope

getGraphHolder() - Method in class ome.model.acquisition.Objective

getGraphHolder() - Method in class ome.model.acquisition.ObjectiveSettings

getGraphHolder() - Method in class ome.model.acquisition.OTF

getGraphHolder() - Method in class ome.model.acquisition.StageLabel

getGraphHolder() - Method in class ome.model.acquisition.TransmittanceRange

getGraphHolder() - Method in class ome.model.annotations.Annotation

getGraphHolder() - Method in class ome.model.annotations.AnnotationAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.ChannelAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.DatasetAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.DetectorAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.DichroicAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.ExperimenterAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.FilesetAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.FilterAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.FolderAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.ImageAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.InstrumentAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.LightPathAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.LightSourceAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.NamespaceAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.NodeAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.ObjectiveAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.OriginalFileAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.PlateAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.ProjectAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.ReagentAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.RoiAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.ScreenAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.SessionAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.ShapeAnnotationLink

getGraphHolder() - Method in class ome.model.annotations.WellAnnotationLink

getGraphHolder() - Method in class ome.model.containers.Dataset

getGraphHolder() - Method in class ome.model.containers.DatasetImageLink

getGraphHolder() - Method in class ome.model.containers.Folder

getGraphHolder() - Method in class ome.model.containers.FolderImageLink

getGraphHolder() - Method in class ome.model.containers.FolderRoiLink

getGraphHolder() - Method in class ome.model.containers.Project

getGraphHolder() - Method in class ome.model.containers.ProjectDatasetLink

getGraphHolder() - Method in class ome.model.core.Channel

getGraphHolder() - Method in class ome.model.core.Image

getGraphHolder() - Method in class ome.model.core.LogicalChannel

getGraphHolder() - Method in class ome.model.core.OriginalFile

getGraphHolder() - Method in class ome.model.core.Pixels

getGraphHolder() - Method in class ome.model.core.PixelsOriginalFileMap

getGraphHolder() - Method in class ome.model.core.PlaneInfo

getGraphHolder() - Method in class ome.model.display.ChannelBinding

getGraphHolder() - Method in class ome.model.display.CodomainMapContext

getGraphHolder() - Method in class ome.model.display.ProjectionDef

getGraphHolder() - Method in class ome.model.display.QuantumDef

getGraphHolder() - Method in class ome.model.display.RenderingDef

getGraphHolder() - Method in class ome.model.display.Thumbnail

getGraphHolder() - Method in class ome.model.enums.AcquisitionMode

getGraphHolder() - Method in class ome.model.enums.AdminPrivilege

getGraphHolder() - Method in class ome.model.enums.ArcType

getGraphHolder() - Method in class ome.model.enums.Binning

getGraphHolder() - Method in class ome.model.enums.ChecksumAlgorithm

getGraphHolder() - Method in class ome.model.enums.ContrastMethod

getGraphHolder() - Method in class ome.model.enums.Correction

getGraphHolder() - Method in class ome.model.enums.DetectorType

getGraphHolder() - Method in class ome.model.enums.DimensionOrder

getGraphHolder() - Method in class ome.model.enums.EventType

getGraphHolder() - Method in class ome.model.enums.ExperimentType

getGraphHolder() - Method in class ome.model.enums.Family

getGraphHolder() - Method in class ome.model.enums.FilamentType

getGraphHolder() - Method in class ome.model.enums.FilterType

getGraphHolder() - Method in class ome.model.enums.Format

getGraphHolder() - Method in class ome.model.enums.Illumination

getGraphHolder() - Method in class ome.model.enums.Immersion

getGraphHolder() - Method in class ome.model.enums.LaserMedium

getGraphHolder() - Method in class ome.model.enums.LaserType

getGraphHolder() - Method in class ome.model.enums.Medium

getGraphHolder() - Method in class ome.model.enums.MicrobeamManipulationType

getGraphHolder() - Method in class ome.model.enums.MicroscopeType

getGraphHolder() - Method in class ome.model.enums.PhotometricInterpretation

getGraphHolder() - Method in class ome.model.enums.PixelsType

getGraphHolder() - Method in class ome.model.enums.ProjectionAxis

getGraphHolder() - Method in class ome.model.enums.ProjectionType

getGraphHolder() - Method in class ome.model.enums.Pulse

getGraphHolder() - Method in class ome.model.enums.RenderingModel

getGraphHolder() - Method in class ome.model.experiment.Experiment

getGraphHolder() - Method in class ome.model.experiment.MicrobeamManipulation

getGraphHolder() - Method in class ome.model.fs.Fileset

getGraphHolder() - Method in class ome.model.fs.FilesetEntry

getGraphHolder() - Method in class ome.model.fs.FilesetJobLink

getGraphHolder() - Method in class ome.model.internal.Link

getGraphHolder() - Method in interface ome.model.IObject

retrieves the GraphHolder for this entity.

getGraphHolder() - Method in class ome.model.jobs.Job

getGraphHolder() - Method in class ome.model.jobs.JobOriginalFileLink

getGraphHolder() - Method in class ome.model.jobs.JobStatus

getGraphHolder() - Method in class ome.model.meta.DBPatch

getGraphHolder() - Method in class ome.model.meta.Event

getGraphHolder() - Method in class ome.model.meta.EventLog

getGraphHolder() - Method in class ome.model.meta.Experimenter

getGraphHolder() - Method in class ome.model.meta.ExperimenterGroup

getGraphHolder() - Method in class ome.model.meta.ExternalInfo

getGraphHolder() - Method in class ome.model.meta.GroupExperimenterMap

getGraphHolder() - Method in class ome.model.meta.Namespace

getGraphHolder() - Method in class ome.model.meta.Node

getGraphHolder() - Method in class ome.model.meta.Session

getGraphHolder() - Method in class ome.model.meta.ShareMember

getGraphHolder() - Method in class ome.model.roi.AffineTransform

getGraphHolder() - Method in class ome.model.roi.Roi

getGraphHolder() - Method in class ome.model.roi.Shape

getGraphHolder() - Method in class ome.model.screen.Plate

getGraphHolder() - Method in class ome.model.screen.PlateAcquisition

getGraphHolder() - Method in class ome.model.screen.Reagent

getGraphHolder() - Method in class ome.model.screen.Screen

getGraphHolder() - Method in class ome.model.screen.ScreenPlateLink

getGraphHolder() - Method in class ome.model.screen.Well

getGraphHolder() - Method in class ome.model.screen.WellReagentLink

getGraphHolder() - Method in class ome.model.screen.WellSample

getGraphHolder() - Method in class ome.model.stats.StatsInfo

getGraphHolder() - Method in class ome.util.PermDetails

getGreen() - Method in class ome.model.core.Channel

Simple field ome.model.core.Channel.green (java.lang.Integer)

getGreen() - Method in class ome.model.display.ChannelBinding

Simple field ome.model.display.ChannelBinding.green (java.lang.Integer)

getGreen() - Method in class ome.model.screen.Well

Simple field ome.model.screen.Well.green (java.lang.Integer)

getGroup() - Method in class ome.model.acquisition.Detector.Details

getGroup() - Method in class ome.model.acquisition.DetectorSettings.Details

getGroup() - Method in class ome.model.acquisition.Dichroic.Details

getGroup() - Method in class ome.model.acquisition.Filter.Details

getGroup() - Method in class ome.model.acquisition.FilterSet.Details

getGroup() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details

getGroup() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details

getGroup() - Method in class ome.model.acquisition.ImagingEnvironment.Details

getGroup() - Method in class ome.model.acquisition.Instrument.Details

getGroup() - Method in class ome.model.acquisition.LightPath.Details

getGroup() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details

getGroup() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details

getGroup() - Method in class ome.model.acquisition.LightSettings.Details

getGroup() - Method in class ome.model.acquisition.LightSource.Details

getGroup() - Method in class ome.model.acquisition.Microscope.Details

getGroup() - Method in class ome.model.acquisition.Objective.Details

getGroup() - Method in class ome.model.acquisition.ObjectiveSettings.Details

getGroup() - Method in class ome.model.acquisition.OTF.Details

getGroup() - Method in class ome.model.acquisition.StageLabel.Details

getGroup() - Method in class ome.model.acquisition.TransmittanceRange.Details

getGroup() - Method in class ome.model.annotations.Annotation.Details

getGroup() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.ChannelAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.DatasetAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.DetectorAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.DichroicAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.FilesetAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.FilterAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.FolderAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.ImageAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.LightPathAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.NodeAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.PlateAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.ProjectAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.ReagentAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.RoiAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.ScreenAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.SessionAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.ShapeAnnotationLink.Details

getGroup() - Method in class ome.model.annotations.WellAnnotationLink.Details

getGroup() - Method in class ome.model.containers.Dataset.Details

getGroup() - Method in class ome.model.containers.DatasetImageLink.Details

getGroup() - Method in class ome.model.containers.Folder.Details

getGroup() - Method in class ome.model.containers.FolderImageLink.Details

getGroup() - Method in class ome.model.containers.FolderRoiLink.Details

getGroup() - Method in class ome.model.containers.Project.Details

getGroup() - Method in class ome.model.containers.ProjectDatasetLink.Details

getGroup() - Method in class ome.model.core.Channel.Details

getGroup() - Method in class ome.model.core.Image.Details

getGroup() - Method in class ome.model.core.LogicalChannel.Details

getGroup() - Method in class ome.model.core.OriginalFile.Details

getGroup() - Method in class ome.model.core.Pixels.Details

getGroup() - Method in class ome.model.core.PixelsOriginalFileMap.Details

getGroup() - Method in class ome.model.core.PlaneInfo.Details

getGroup() - Method in class ome.model.display.ChannelBinding.Details

getGroup() - Method in class ome.model.display.CodomainMapContext.Details

getGroup() - Method in class ome.model.display.ProjectionDef.Details

getGroup() - Method in class ome.model.display.QuantumDef.Details

getGroup() - Method in class ome.model.display.RenderingDef.Details

getGroup() - Method in class ome.model.display.Thumbnail.Details

getGroup() - Method in class ome.model.experiment.Experiment.Details

getGroup() - Method in class ome.model.experiment.MicrobeamManipulation.Details

getGroup() - Method in class ome.model.fs.Fileset.Details

getGroup() - Method in class ome.model.fs.FilesetEntry.Details

getGroup() - Method in class ome.model.fs.FilesetJobLink.Details

getGroup() - Method in class ome.model.internal.Details

getGroup() - Method in class ome.model.internal.Link.Details

getGroup() - Method in class ome.model.jobs.Job.Details

getGroup() - Method in class ome.model.jobs.JobOriginalFileLink.Details

getGroup() - Method in class ome.model.meta.ExternalInfo.Details

getGroup() - Method in class ome.model.meta.Share

Many-to-one field ome.model.meta.Share.group (ome.model.meta.ExperimenterGroup)

getGroup() - Method in class ome.model.roi.AffineTransform.Details

getGroup() - Method in class ome.model.roi.Roi.Details

getGroup() - Method in class ome.model.roi.Shape.Details

getGroup() - Method in class ome.model.screen.Plate.Details

getGroup() - Method in class ome.model.screen.PlateAcquisition.Details

getGroup() - Method in class ome.model.screen.Reagent.Details

getGroup() - Method in class ome.model.screen.Screen.Details

getGroup() - Method in class ome.model.screen.ScreenPlateLink.Details

getGroup() - Method in class ome.model.screen.Well.Details

getGroup() - Method in class ome.model.screen.WellReagentLink.Details

getGroup() - Method in class ome.model.screen.WellSample.Details

getGroup() - Method in class ome.model.stats.StatsInfo.Details

getGroup() - Method in class ome.parameters.Parameters

Fulfills the old PojoOptions requirement for returning null if no owner set.

getGroupExperimenterMap() - Method in class ome.model.meta.Experimenter

returns groupExperimenterMap .

getGroupExperimenterMap(int) - Method in class ome.model.meta.Experimenter

Gets the ome.model.meta.GroupExperimenterMap at the given index.

getGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup

returns groupExperimenterMap .

getGroupIds(Collection<String>) - Method in interface ome.util.SqlAction

getGroupIds(Collection<String>) - Method in class ome.util.SqlAction.Impl

getGroupname() - Method in class ome.model.jobs.Job

Simple field ome.model.jobs.Job.groupname (java.lang.String)

getGroupPermissions(long) - Method in interface ome.util.SqlAction

Returns the permissions for the given group id.

getGroupPermissions(long) - Method in class ome.util.SqlAction.Impl

getHash() - Method in class ome.model.core.OriginalFile

Simple field ome.model.core.OriginalFile.hash (java.lang.String)

getHasher() - Method in class ome.model.core.OriginalFile

Many-to-one field ome.model.core.OriginalFile.hasher (ome.model.enums.ChecksumAlgorithm)

getHeight() - Method in class ome.model.roi.Mask

Simple field ome.model.roi.Mask.height (java.lang.Double)

getHeight() - Method in class ome.model.roi.Rectangle

Simple field ome.model.roi.Rectangle.height (java.lang.Double)

getHumidity() - Method in class ome.model.acquisition.ImagingEnvironment

Simple field ome.model.acquisition.ImagingEnvironment.humidity (java.lang.Double)

getId() - Method in class ome.model.acquisition.Detector

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.DetectorSettings

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.Dichroic

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.Filter

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.FilterSet

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.ImagingEnvironment

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.Instrument

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.LightPath

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.LightSettings

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.LightSource

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.Microscope

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.Objective

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.ObjectiveSettings

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.OTF

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.StageLabel

The DB unique identifier for this object.

getId() - Method in class ome.model.acquisition.TransmittanceRange

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.Annotation

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.AnnotationAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.ChannelAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.DatasetAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.DetectorAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.DichroicAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.ExperimenterAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.FilesetAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.FilterAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.FolderAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.ImageAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.InstrumentAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.LightPathAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.LightSourceAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.NamespaceAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.NodeAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.ObjectiveAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.OriginalFileAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.PlateAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.ProjectAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.ReagentAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.RoiAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.ScreenAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.SessionAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.ShapeAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.annotations.WellAnnotationLink

The DB unique identifier for this object.

getId() - Method in class ome.model.containers.Dataset

The DB unique identifier for this object.

getId() - Method in class ome.model.containers.DatasetImageLink

The DB unique identifier for this object.

getId() - Method in class ome.model.containers.Folder

The DB unique identifier for this object.

getId() - Method in class ome.model.containers.FolderImageLink

The DB unique identifier for this object.

getId() - Method in class ome.model.containers.FolderRoiLink

The DB unique identifier for this object.

getId() - Method in class ome.model.containers.Project

The DB unique identifier for this object.

getId() - Method in class ome.model.containers.ProjectDatasetLink

The DB unique identifier for this object.

getId() - Method in class ome.model.core.Channel

The DB unique identifier for this object.

getId() - Method in class ome.model.core.Image

The DB unique identifier for this object.

getId() - Method in class ome.model.core.LogicalChannel

The DB unique identifier for this object.

getId() - Method in class ome.model.core.OriginalFile

The DB unique identifier for this object.

getId() - Method in class ome.model.core.Pixels

The DB unique identifier for this object.

getId() - Method in class ome.model.core.PixelsOriginalFileMap

The DB unique identifier for this object.

getId() - Method in class ome.model.core.PlaneInfo

The DB unique identifier for this object.

getId() - Method in class ome.model.display.ChannelBinding

The DB unique identifier for this object.

getId() - Method in class ome.model.display.CodomainMapContext

The DB unique identifier for this object.

getId() - Method in class ome.model.display.ProjectionDef

The DB unique identifier for this object.

getId() - Method in class ome.model.display.QuantumDef

The DB unique identifier for this object.

getId() - Method in class ome.model.display.RenderingDef

The DB unique identifier for this object.

getId() - Method in class ome.model.display.Thumbnail

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.AcquisitionMode

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.AdminPrivilege

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.ArcType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.Binning

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.ChecksumAlgorithm

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.ContrastMethod

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.Correction

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.DetectorType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.DimensionOrder

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.EventType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.ExperimentType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.Family

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.FilamentType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.FilterType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.Format

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.Illumination

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.Immersion

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.LaserMedium

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.LaserType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.Medium

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.MicrobeamManipulationType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.MicroscopeType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.PhotometricInterpretation

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.PixelsType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.ProjectionAxis

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.ProjectionType

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.Pulse

The DB unique identifier for this object.

getId() - Method in class ome.model.enums.RenderingModel

The DB unique identifier for this object.

getId() - Method in class ome.model.experiment.Experiment

The DB unique identifier for this object.

getId() - Method in class ome.model.experiment.MicrobeamManipulation

The DB unique identifier for this object.

getId() - Method in class ome.model.fs.Fileset

The DB unique identifier for this object.

getId() - Method in class ome.model.fs.FilesetEntry

The DB unique identifier for this object.

getId() - Method in class ome.model.fs.FilesetJobLink

The DB unique identifier for this object.

getId() - Method in class ome.model.internal.Link

The DB unique identifier for this object.

getId() - Method in interface ome.model.IObject

primary key of this object.

getId() - Method in class ome.model.jobs.Job

The DB unique identifier for this object.

getId() - Method in class ome.model.jobs.JobOriginalFileLink

The DB unique identifier for this object.

getId() - Method in class ome.model.jobs.JobStatus

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.DBPatch

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.Event

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.EventLog

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.Experimenter

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.ExperimenterGroup

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.ExternalInfo

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.GroupExperimenterMap

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.Namespace

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.Node

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.Session

The DB unique identifier for this object.

getId() - Method in class ome.model.meta.ShareMember

The DB unique identifier for this object.

getId() - Method in class ome.model.roi.AffineTransform

The DB unique identifier for this object.

getId() - Method in class ome.model.roi.Roi

The DB unique identifier for this object.

getId() - Method in class ome.model.roi.Shape

The DB unique identifier for this object.

getId() - Method in class ome.model.screen.Plate

The DB unique identifier for this object.

getId() - Method in class ome.model.screen.PlateAcquisition

The DB unique identifier for this object.

getId() - Method in class ome.model.screen.Reagent

The DB unique identifier for this object.

getId() - Method in class ome.model.screen.Screen

The DB unique identifier for this object.

getId() - Method in class ome.model.screen.ScreenPlateLink

The DB unique identifier for this object.

getId() - Method in class ome.model.screen.Well

The DB unique identifier for this object.

getId() - Method in class ome.model.screen.WellReagentLink

The DB unique identifier for this object.

getId() - Method in class ome.model.screen.WellSample

The DB unique identifier for this object.

getId() - Method in class ome.model.stats.StatsInfo

The DB unique identifier for this object.

getId() - Method in class ome.util.PermDetails

getIllumination() - Method in class ome.model.core.LogicalChannel

Many-to-one field ome.model.core.LogicalChannel.illumination (ome.model.enums.Illumination)

getImage() - Method in class ome.model.core.Pixels

Many-to-one field ome.model.core.Pixels.image (ome.model.core.Image)

getImage() - Method in class ome.model.roi.Roi

Many-to-one field ome.model.roi.Roi.image (ome.model.core.Image)

getImage() - Method in class ome.model.screen.WellSample

Many-to-one field ome.model.screen.WellSample.image (ome.model.core.Image)

getImageDescription() - Method in class ome.model.jobs.ImportJob

Deprecated.

Simple field ome.model.jobs.ImportJob.imageDescription (java.lang.String)

getImageLinks() - Method in class ome.model.containers.Dataset

returns imageLinks .

getImageLinks() - Method in class ome.model.containers.Folder

returns imageLinks .

getImageLinksCountPerOwner() - Method in class ome.model.containers.Dataset

If fetched, returns the count(*) of ome.model.containers.DatasetImageLink that a user has.

getImageLinksCountPerOwner() - Method in class ome.model.containers.Folder

If fetched, returns the count(*) of ome.model.containers.FolderImageLink that a user has.

getImageName() - Method in class ome.model.jobs.ImportJob

Deprecated.

Simple field ome.model.jobs.ImportJob.imageName (java.lang.String)

getImages() - Method in class ome.model.fs.Fileset

returns images .

getImagingEnvironment() - Method in class ome.model.core.Image

Many-to-one field ome.model.core.Image.imagingEnvironment (ome.model.acquisition.ImagingEnvironment)

getImmersion() - Method in class ome.model.acquisition.Objective

Many-to-one field ome.model.acquisition.Objective.immersion (ome.model.enums.Immersion)

getIndexes() - Method in class ome.util.LSID

Returns the indexes for this LSID within the OME-XML data model.

getInputEnd() - Method in class ome.model.display.ChannelBinding

Simple field ome.model.display.ChannelBinding.inputEnd (java.lang.Double)

getInputStart() - Method in class ome.model.display.ChannelBinding

Simple field ome.model.display.ChannelBinding.inputStart (java.lang.Double)

getInstitution() - Method in class ome.model.meta.Experimenter

Simple field ome.model.meta.Experimenter.institution (java.lang.String)

getInstrument() - Method in class ome.model.acquisition.Detector

Many-to-one field ome.model.acquisition.Detector.instrument (ome.model.acquisition.Instrument)

getInstrument() - Method in class ome.model.acquisition.Dichroic

Many-to-one field ome.model.acquisition.Dichroic.instrument (ome.model.acquisition.Instrument)

getInstrument() - Method in class ome.model.acquisition.Filter

Many-to-one field ome.model.acquisition.Filter.instrument (ome.model.acquisition.Instrument)

getInstrument() - Method in class ome.model.acquisition.FilterSet

Many-to-one field ome.model.acquisition.FilterSet.instrument (ome.model.acquisition.Instrument)

getInstrument() - Method in class ome.model.acquisition.LightSource

Many-to-one field ome.model.acquisition.LightSource.instrument (ome.model.acquisition.Instrument)

getInstrument() - Method in class ome.model.acquisition.Objective

Many-to-one field ome.model.acquisition.Objective.instrument (ome.model.acquisition.Instrument)

getInstrument() - Method in class ome.model.acquisition.OTF

Many-to-one field ome.model.acquisition.OTF.instrument (ome.model.acquisition.Instrument)

getInstrument() - Method in class ome.model.core.Image

Many-to-one field ome.model.core.Image.instrument (ome.model.acquisition.Instrument)

getIntegration() - Method in class ome.model.acquisition.DetectorSettings

Simple field ome.model.acquisition.DetectorSettings.integration (java.lang.Integer)

getInternalContext() - Method in class ome.util.PermDetails

In order to properly test the permissions for this object, it must be possible to get the internal context.

getIris() - Method in class ome.model.acquisition.Objective

Simple field ome.model.acquisition.Objective.iris (java.lang.Boolean)

getItemCount() - Method in class ome.model.meta.Share

Simple field ome.model.meta.Share.itemCount (java.lang.Long)

getJavaClass() - Method in class ome.util.LSID

Returns the Java class which qualifies the type of object this LSID represents.

getJobLinks() - Method in class ome.model.fs.Fileset

returns jobLinks .

getJobLinksCountPerOwner() - Method in class ome.model.fs.Fileset

If fetched, returns the count(*) of ome.model.fs.FilesetJobLink that a user has.

getKeywords() - Method in class ome.model.meta.Namespace

Simple field ome.model.meta.Namespace.keywords (java.util.List)

getLaserMedium() - Method in class ome.model.acquisition.Laser

Many-to-one field ome.model.acquisition.Laser.laserMedium (ome.model.enums.LaserMedium)

getLastName() - Method in class ome.model.meta.Experimenter

Simple field ome.model.meta.Experimenter.lastName (java.lang.String)

getLdap() - Method in class ome.model.meta.Experimenter

Simple field ome.model.meta.Experimenter.ldap (java.lang.Boolean)

getLdap() - Method in class ome.model.meta.ExperimenterGroup

Simple field ome.model.meta.ExperimenterGroup.ldap (java.lang.Boolean)

getLdapExperimenters() - Method in interface ome.util.SqlAction

Gets the experimenters who have the ldap attribute enabled.

getLdapExperimenters() - Method in class ome.util.SqlAction.Impl

getLensNA() - Method in class ome.model.acquisition.Objective

Simple field ome.model.acquisition.Objective.lensNA (java.lang.Double)

getLightPath() - Method in class ome.model.core.LogicalChannel

Many-to-one field ome.model.core.LogicalChannel.lightPath (ome.model.acquisition.LightPath)

getLightPathExcitationFilterLink(int) - Method in class ome.model.acquisition.LightPath

Gets the ome.model.acquisition.LightPathExcitationFilterLink at the given index.

getLightSource() - Method in class ome.model.acquisition.Instrument

returns lightSource .

getLightSource() - Method in class ome.model.acquisition.LightSettings

Many-to-one field ome.model.acquisition.LightSettings.lightSource (ome.model.acquisition.LightSource)

getLightSourceSettings() - Method in class ome.model.core.LogicalChannel

Many-to-one field ome.model.core.LogicalChannel.lightSourceSettings (ome.model.acquisition.LightSettings)

getLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation

returns lightSourceSettings .

getLimit() - Method in class ome.parameters.Parameters

getLocked() - Method in class ome.model.roi.Shape

Simple field ome.model.roi.Shape.locked (java.lang.Boolean)

getLogicalChannel() - Method in class ome.model.core.Channel

Many-to-one field ome.model.core.Channel.logicalChannel (ome.model.core.LogicalChannel)

getLogs() - Method in class ome.model.meta.Event

returns logs .

getLongValue() - Method in class ome.model.annotations.LongAnnotation

Simple field ome.model.annotations.LongAnnotation.longValue (java.lang.Long)

getLookupTable() - Method in class ome.model.core.Channel

Simple field ome.model.core.Channel.lookupTable (java.lang.String)

getLookupTable() - Method in class ome.model.display.ChannelBinding

Simple field ome.model.display.ChannelBinding.lookupTable (java.lang.String)

getLotNumber() - Method in class ome.model.acquisition.Detector

Simple field ome.model.acquisition.Detector.lotNumber (java.lang.String)

getLotNumber() - Method in class ome.model.acquisition.Dichroic

Simple field ome.model.acquisition.Dichroic.lotNumber (java.lang.String)

getLotNumber() - Method in class ome.model.acquisition.Filter

Simple field ome.model.acquisition.Filter.lotNumber (java.lang.String)

getLotNumber() - Method in class ome.model.acquisition.FilterSet

Simple field ome.model.acquisition.FilterSet.lotNumber (java.lang.String)

getLotNumber() - Method in class ome.model.acquisition.LightSource

Simple field ome.model.acquisition.LightSource.lotNumber (java.lang.String)

getLotNumber() - Method in class ome.model.acquisition.Microscope

Simple field ome.model.acquisition.Microscope.lotNumber (java.lang.String)

getLotNumber() - Method in class ome.model.acquisition.Objective

Simple field ome.model.acquisition.Objective.lotNumber (java.lang.String)

getLowerLimit() - Method in class ome.model.display.PlaneSlicingContext

Simple field ome.model.display.PlaneSlicingContext.lowerLimit (java.lang.Integer)

getLsid() - Method in class ome.model.meta.ExternalInfo

Simple field ome.model.meta.ExternalInfo.lsid (java.lang.String)

getManufacturer() - Method in class ome.model.acquisition.Detector

Simple field ome.model.acquisition.Detector.manufacturer (java.lang.String)

getManufacturer() - Method in class ome.model.acquisition.Dichroic

Simple field ome.model.acquisition.Dichroic.manufacturer (java.lang.String)

getManufacturer() - Method in class ome.model.acquisition.Filter

Simple field ome.model.acquisition.Filter.manufacturer (java.lang.String)

getManufacturer() - Method in class ome.model.acquisition.FilterSet

Simple field ome.model.acquisition.FilterSet.manufacturer (java.lang.String)

getManufacturer() - Method in class ome.model.acquisition.LightSource

Simple field ome.model.acquisition.LightSource.manufacturer (java.lang.String)

getManufacturer() - Method in class ome.model.acquisition.Microscope

Simple field ome.model.acquisition.Microscope.manufacturer (java.lang.String)

getManufacturer() - Method in class ome.model.acquisition.Objective

Simple field ome.model.acquisition.Objective.manufacturer (java.lang.String)

getMap() - Method in class ome.model.acquisition.GenericExcitationSource

getMap() - Method in class ome.model.acquisition.ImagingEnvironment

getMapValue() - Method in class ome.model.annotations.MapAnnotation

getMarkerEnd() - Method in class ome.model.roi.Line

Simple field ome.model.roi.Line.markerEnd (java.lang.String)

getMarkerEnd() - Method in class ome.model.roi.Polyline

Simple field ome.model.roi.Polyline.markerEnd (java.lang.String)

getMarkerStart() - Method in class ome.model.roi.Line

Simple field ome.model.roi.Line.markerStart (java.lang.String)

getMarkerStart() - Method in class ome.model.roi.Polyline

Simple field ome.model.roi.Polyline.markerStart (java.lang.String)

getMaximum() - Method in class ome.util.PixelData

Returns the minimum pixel value this pixel data supports.

getMaximumFieldCount() - Method in class ome.model.screen.PlateAcquisition

Simple field ome.model.screen.PlateAcquisition.maximumFieldCount (java.lang.Integer)

getMedium() - Method in class ome.model.acquisition.ObjectiveSettings

Many-to-one field ome.model.acquisition.ObjectiveSettings.medium (ome.model.enums.Medium)

getMessage() - Method in exception ome.conditions.acl.ACLViolation

getMessage() - Method in exception ome.conditions.acl.CollectedACLViolations

getMessage() - Method in class ome.model.jobs.Job

Simple field ome.model.jobs.Job.message (java.lang.String)

getMessage() - Method in class ome.model.meta.DBPatch

Simple field ome.model.meta.DBPatch.message (java.lang.String)

getMessage() - Method in class ome.model.meta.Session

Simple field ome.model.meta.Session.message (java.lang.String)

getMethodology() - Method in class ome.model.core.Pixels

Simple field ome.model.core.Pixels.methodology (java.lang.String)

getMicrobeamManipulation() - Method in class ome.model.acquisition.LightSettings

Many-to-one field ome.model.acquisition.LightSettings.microbeamManipulation (ome.model.experiment.MicrobeamManipulation)

getMicrobeamManipulation() - Method in class ome.model.experiment.Experiment

returns microbeamManipulation .

getMicroscope() - Method in class ome.model.acquisition.Instrument

Many-to-one field ome.model.acquisition.Instrument.microscope (ome.model.acquisition.Microscope)

getMiddleName() - Method in class ome.model.meta.Experimenter

Simple field ome.model.meta.Experimenter.middleName (java.lang.String)

getMimetype() - Method in class ome.model.core.OriginalFile

Simple field ome.model.core.OriginalFile.mimetype (java.lang.String)

getMimeType() - Method in class ome.model.display.Thumbnail

Simple field ome.model.display.Thumbnail.mimeType (java.lang.String)

getMinimum() - Method in class ome.util.PixelData

Returns the minimum pixel value this pixel data supports.

getMode() - Method in class ome.model.core.LogicalChannel

Many-to-one field ome.model.core.LogicalChannel.mode (ome.model.enums.AcquisitionMode)

getModel() - Method in class ome.model.acquisition.Detector

Simple field ome.model.acquisition.Detector.model (java.lang.String)

getModel() - Method in class ome.model.acquisition.Dichroic

Simple field ome.model.acquisition.Dichroic.model (java.lang.String)

getModel() - Method in class ome.model.acquisition.Filter

Simple field ome.model.acquisition.Filter.model (java.lang.String)

getModel() - Method in class ome.model.acquisition.FilterSet

Simple field ome.model.acquisition.FilterSet.model (java.lang.String)

getModel() - Method in class ome.model.acquisition.LightSource

Simple field ome.model.acquisition.LightSource.model (java.lang.String)

getModel() - Method in class ome.model.acquisition.Microscope

Simple field ome.model.acquisition.Microscope.model (java.lang.String)

getModel() - Method in class ome.model.acquisition.Objective

Simple field ome.model.acquisition.Objective.model (java.lang.String)

getModel() - Method in class ome.model.display.RenderingDef

Many-to-one field ome.model.display.RenderingDef.model (ome.model.enums.RenderingModel)

getMtime() - Method in class ome.model.core.OriginalFile

Simple field ome.model.core.OriginalFile.mtime (java.sql.Timestamp)

getMultivalued() - Method in class ome.model.meta.Namespace

Simple field ome.model.meta.Namespace.multivalued (java.lang.Boolean)

getName() - Method in class ome.model.acquisition.StageLabel

Simple field ome.model.acquisition.StageLabel.name (java.lang.String)

getName() - Method in class ome.model.annotations.Annotation

Simple field ome.model.annotations.Annotation.name (java.lang.String)

getName() - Method in class ome.model.containers.Dataset

Simple field ome.model.containers.Dataset.name (java.lang.String)

getName() - Method in class ome.model.containers.Folder

Simple field ome.model.containers.Folder.name (java.lang.String)

getName() - Method in class ome.model.containers.Project

Simple field ome.model.containers.Project.name (java.lang.String)

getName() - Method in class ome.model.core.Image

Simple field ome.model.core.Image.name (java.lang.String)

getName() - Method in class ome.model.core.LogicalChannel

Simple field ome.model.core.LogicalChannel.name (java.lang.String)

getName() - Method in class ome.model.core.OriginalFile

Simple field ome.model.core.OriginalFile.name (java.lang.String)

getName() - Method in class ome.model.display.RenderingDef

Simple field ome.model.display.RenderingDef.name (java.lang.String)

getName() - Method in class ome.model.internal.NamedValue

getName() - Method in class ome.model.meta.ExperimenterGroup

Simple field ome.model.meta.ExperimenterGroup.name (java.lang.String)

getName() - Method in class ome.model.meta.Namespace

Simple field ome.model.meta.Namespace.name (java.lang.String)

getName() - Method in class ome.model.roi.Roi

Simple field ome.model.roi.Roi.name (java.lang.String)

getName() - Method in class ome.model.screen.Plate

Simple field ome.model.screen.Plate.name (java.lang.String)

getName() - Method in class ome.model.screen.PlateAcquisition

Simple field ome.model.screen.PlateAcquisition.name (java.lang.String)

getName() - Method in class ome.model.screen.Reagent

Simple field ome.model.screen.Reagent.name (java.lang.String)

getName() - Method in class ome.model.screen.Screen

Simple field ome.model.screen.Screen.name (java.lang.String)

getName() - Method in class ome.util.PrivilegedStringType

getNdFilter() - Method in class ome.model.core.LogicalChannel

Simple field ome.model.core.LogicalChannel.ndFilter (java.lang.Double)

getNode() - Method in class ome.model.meta.Session

Many-to-one field ome.model.meta.Session.node (ome.model.meta.Node)

getNoiseReduction() - Method in class ome.model.display.ChannelBinding

Simple field ome.model.display.ChannelBinding.noiseReduction (java.lang.Boolean)

getNominalMagnification() - Method in class ome.model.acquisition.Objective

Simple field ome.model.acquisition.Objective.nominalMagnification (java.lang.Double)

getNs() - Method in class ome.model.annotations.Annotation

Simple field ome.model.annotations.Annotation.ns (java.lang.String)

getObjective() - Method in class ome.model.acquisition.Instrument

returns objective .

getObjective() - Method in class ome.model.acquisition.ObjectiveSettings

Many-to-one field ome.model.acquisition.ObjectiveSettings.objective (ome.model.acquisition.Objective)

getObjective() - Method in class ome.model.acquisition.OTF

Many-to-one field ome.model.acquisition.OTF.objective (ome.model.acquisition.Objective)

getObjectiveSettings() - Method in class ome.model.core.Image

Many-to-one field ome.model.core.Image.objectiveSettings (ome.model.acquisition.ObjectiveSettings)

getObjectVoidMethods(Class<T>) - Static method in class ome.util.Utils

primarily used in Grinder to discover what methods to call

getOffset() - Method in class ome.parameters.Parameters

getOffsetValue() - Method in class ome.model.acquisition.Detector

Simple field ome.model.acquisition.Detector.offsetValue (java.lang.Double)

getOffsetValue() - Method in class ome.model.acquisition.DetectorSettings

Simple field ome.model.acquisition.DetectorSettings.offsetValue (java.lang.Double)

getOmeName() - Method in class ome.model.meta.Experimenter

Simple field ome.model.meta.Experimenter.omeName (java.lang.String)

getOpticalAxisAveraged() - Method in class ome.model.acquisition.OTF

Simple field ome.model.acquisition.OTF.opticalAxisAveraged (java.lang.Boolean)

getOrder() - Method in class ome.util.PixelData

Returns the byte order of the backing buffer.

getOriginalFile() - Method in class ome.model.fs.FilesetEntry

Many-to-one field ome.model.fs.FilesetEntry.originalFile (ome.model.core.OriginalFile)

getOriginalFileLinks() - Method in class ome.model.jobs.Job

returns originalFileLinks .

getOriginalFileLinksCountPerOwner() - Method in class ome.model.jobs.Job

If fetched, returns the count(*) of ome.model.jobs.JobOriginalFileLink that a user has.

getOtf() - Method in class ome.model.acquisition.Instrument

returns otf .

getOtf() - Method in class ome.model.core.LogicalChannel

Many-to-one field ome.model.core.LogicalChannel.otf (ome.model.acquisition.OTF)

getOwner() - Method in class ome.model.acquisition.Detector.Details

getOwner() - Method in class ome.model.acquisition.DetectorSettings.Details

getOwner() - Method in class ome.model.acquisition.Dichroic.Details

getOwner() - Method in class ome.model.acquisition.Filter.Details

getOwner() - Method in class ome.model.acquisition.FilterSet.Details

getOwner() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details

getOwner() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details

getOwner() - Method in class ome.model.acquisition.ImagingEnvironment.Details

getOwner() - Method in class ome.model.acquisition.Instrument.Details

getOwner() - Method in class ome.model.acquisition.LightPath.Details

getOwner() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details

getOwner() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details

getOwner() - Method in class ome.model.acquisition.LightSettings.Details

getOwner() - Method in class ome.model.acquisition.LightSource.Details

getOwner() - Method in class ome.model.acquisition.Microscope.Details

getOwner() - Method in class ome.model.acquisition.Objective.Details

getOwner() - Method in class ome.model.acquisition.ObjectiveSettings.Details

getOwner() - Method in class ome.model.acquisition.OTF.Details

getOwner() - Method in class ome.model.acquisition.StageLabel.Details

getOwner() - Method in class ome.model.acquisition.TransmittanceRange.Details

getOwner() - Method in class ome.model.annotations.Annotation.Details

getOwner() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.ChannelAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.DatasetAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.DetectorAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.DichroicAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.FilesetAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.FilterAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.FolderAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.ImageAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.LightPathAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.NodeAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.PlateAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.ProjectAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.ReagentAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.RoiAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.ScreenAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.SessionAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.ShapeAnnotationLink.Details

getOwner() - Method in class ome.model.annotations.WellAnnotationLink.Details

getOwner() - Method in class ome.model.containers.Dataset.Details

getOwner() - Method in class ome.model.containers.DatasetImageLink.Details

getOwner() - Method in class ome.model.containers.Folder.Details

getOwner() - Method in class ome.model.containers.FolderImageLink.Details

getOwner() - Method in class ome.model.containers.FolderRoiLink.Details

getOwner() - Method in class ome.model.containers.Project.Details

getOwner() - Method in class ome.model.containers.ProjectDatasetLink.Details

getOwner() - Method in class ome.model.core.Channel.Details

getOwner() - Method in class ome.model.core.Image.Details

getOwner() - Method in class ome.model.core.LogicalChannel.Details

getOwner() - Method in class ome.model.core.OriginalFile.Details

getOwner() - Method in class ome.model.core.Pixels.Details

getOwner() - Method in class ome.model.core.PixelsOriginalFileMap.Details

getOwner() - Method in class ome.model.core.PlaneInfo.Details

getOwner() - Method in class ome.model.display.ChannelBinding.Details

getOwner() - Method in class ome.model.display.CodomainMapContext.Details

getOwner() - Method in class ome.model.display.ProjectionDef.Details

getOwner() - Method in class ome.model.display.QuantumDef.Details

getOwner() - Method in class ome.model.display.RenderingDef.Details

getOwner() - Method in class ome.model.display.Thumbnail.Details

getOwner() - Method in class ome.model.experiment.Experiment.Details

getOwner() - Method in class ome.model.experiment.MicrobeamManipulation.Details

getOwner() - Method in class ome.model.fs.Fileset.Details

getOwner() - Method in class ome.model.fs.FilesetEntry.Details

getOwner() - Method in class ome.model.fs.FilesetJobLink.Details

getOwner() - Method in interface ome.model.IDetails

getOwner() - Method in class ome.model.internal.Details

getOwner() - Method in class ome.model.internal.Link.Details

getOwner() - Method in class ome.model.jobs.Job.Details

getOwner() - Method in class ome.model.jobs.JobOriginalFileLink.Details

getOwner() - Method in class ome.model.meta.ExternalInfo.Details

getOwner() - Method in class ome.model.meta.GroupExperimenterMap

Simple field ome.model.meta.GroupExperimenterMap.owner (java.lang.Boolean)

getOwner() - Method in class ome.model.meta.Session

Many-to-one field ome.model.meta.Session.owner (ome.model.meta.Experimenter)

getOwner() - Method in class ome.model.roi.AffineTransform.Details

getOwner() - Method in class ome.model.roi.Roi.Details

getOwner() - Method in class ome.model.roi.Shape.Details

getOwner() - Method in class ome.model.screen.Plate.Details

getOwner() - Method in class ome.model.screen.PlateAcquisition.Details

getOwner() - Method in class ome.model.screen.Reagent.Details

getOwner() - Method in class ome.model.screen.Screen.Details

getOwner() - Method in class ome.model.screen.ScreenPlateLink.Details

getOwner() - Method in class ome.model.screen.Well.Details

getOwner() - Method in class ome.model.screen.WellReagentLink.Details

getOwner() - Method in class ome.model.screen.WellSample.Details

getOwner() - Method in class ome.model.stats.StatsInfo.Details

getParams() - Method in class ome.model.jobs.ParseJob

Simple field ome.model.jobs.ParseJob.params (byte[])

getParent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

Many-to-one field ome.model.acquisition.FilterSetEmissionFilterLink.parent (ome.model.acquisition.FilterSet)

getParent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

Many-to-one field ome.model.acquisition.FilterSetExcitationFilterLink.parent (ome.model.acquisition.FilterSet)

getParent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

Many-to-one field ome.model.acquisition.LightPathEmissionFilterLink.parent (ome.model.acquisition.LightPath)

getParent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

Many-to-one field ome.model.acquisition.LightPathExcitationFilterLink.parent (ome.model.acquisition.LightPath)

getParent() - Method in class ome.model.annotations.AnnotationAnnotationLink

Many-to-one field ome.model.annotations.AnnotationAnnotationLink.parent (ome.model.annotations.Annotation)

getParent() - Method in class ome.model.annotations.ChannelAnnotationLink

Many-to-one field ome.model.annotations.ChannelAnnotationLink.parent (ome.model.core.Channel)

getParent() - Method in class ome.model.annotations.DatasetAnnotationLink

Many-to-one field ome.model.annotations.DatasetAnnotationLink.parent (ome.model.containers.Dataset)

getParent() - Method in class ome.model.annotations.DetectorAnnotationLink

Many-to-one field ome.model.annotations.DetectorAnnotationLink.parent (ome.model.acquisition.Detector)

getParent() - Method in class ome.model.annotations.DichroicAnnotationLink

Many-to-one field ome.model.annotations.DichroicAnnotationLink.parent (ome.model.acquisition.Dichroic)

getParent() - Method in class ome.model.annotations.ExperimenterAnnotationLink

Many-to-one field ome.model.annotations.ExperimenterAnnotationLink.parent (ome.model.meta.Experimenter)

getParent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

Many-to-one field ome.model.annotations.ExperimenterGroupAnnotationLink.parent (ome.model.meta.ExperimenterGroup)

getParent() - Method in class ome.model.annotations.FilesetAnnotationLink

Many-to-one field ome.model.annotations.FilesetAnnotationLink.parent (ome.model.fs.Fileset)

getParent() - Method in class ome.model.annotations.FilterAnnotationLink

Many-to-one field ome.model.annotations.FilterAnnotationLink.parent (ome.model.acquisition.Filter)

getParent() - Method in class ome.model.annotations.FolderAnnotationLink

Many-to-one field ome.model.annotations.FolderAnnotationLink.parent (ome.model.containers.Folder)

getParent() - Method in class ome.model.annotations.ImageAnnotationLink

Many-to-one field ome.model.annotations.ImageAnnotationLink.parent (ome.model.core.Image)

getParent() - Method in class ome.model.annotations.InstrumentAnnotationLink

Many-to-one field ome.model.annotations.InstrumentAnnotationLink.parent (ome.model.acquisition.Instrument)

getParent() - Method in class ome.model.annotations.LightPathAnnotationLink

Many-to-one field ome.model.annotations.LightPathAnnotationLink.parent (ome.model.acquisition.LightPath)

getParent() - Method in class ome.model.annotations.LightSourceAnnotationLink

Many-to-one field ome.model.annotations.LightSourceAnnotationLink.parent (ome.model.acquisition.LightSource)

getParent() - Method in class ome.model.annotations.NamespaceAnnotationLink

Many-to-one field ome.model.annotations.NamespaceAnnotationLink.parent (ome.model.meta.Namespace)

getParent() - Method in class ome.model.annotations.NodeAnnotationLink

Many-to-one field ome.model.annotations.NodeAnnotationLink.parent (ome.model.meta.Node)

getParent() - Method in class ome.model.annotations.ObjectiveAnnotationLink

Many-to-one field ome.model.annotations.ObjectiveAnnotationLink.parent (ome.model.acquisition.Objective)

getParent() - Method in class ome.model.annotations.OriginalFileAnnotationLink

Many-to-one field ome.model.annotations.OriginalFileAnnotationLink.parent (ome.model.core.OriginalFile)

getParent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

Many-to-one field ome.model.annotations.PlaneInfoAnnotationLink.parent (ome.model.core.PlaneInfo)

getParent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

Many-to-one field ome.model.annotations.PlateAcquisitionAnnotationLink.parent (ome.model.screen.PlateAcquisition)

getParent() - Method in class ome.model.annotations.PlateAnnotationLink

Many-to-one field ome.model.annotations.PlateAnnotationLink.parent (ome.model.screen.Plate)

getParent() - Method in class ome.model.annotations.ProjectAnnotationLink

Many-to-one field ome.model.annotations.ProjectAnnotationLink.parent (ome.model.containers.Project)

getParent() - Method in class ome.model.annotations.ReagentAnnotationLink

Many-to-one field ome.model.annotations.ReagentAnnotationLink.parent (ome.model.screen.Reagent)

getParent() - Method in class ome.model.annotations.RoiAnnotationLink

Many-to-one field ome.model.annotations.RoiAnnotationLink.parent (ome.model.roi.Roi)

getParent() - Method in class ome.model.annotations.ScreenAnnotationLink

Many-to-one field ome.model.annotations.ScreenAnnotationLink.parent (ome.model.screen.Screen)

getParent() - Method in class ome.model.annotations.SessionAnnotationLink

Many-to-one field ome.model.annotations.SessionAnnotationLink.parent (ome.model.meta.Session)

getParent() - Method in class ome.model.annotations.ShapeAnnotationLink

Many-to-one field ome.model.annotations.ShapeAnnotationLink.parent (ome.model.roi.Shape)

getParent() - Method in class ome.model.annotations.WellAnnotationLink

Many-to-one field ome.model.annotations.WellAnnotationLink.parent (ome.model.screen.Well)

getParent() - Method in class ome.model.containers.DatasetImageLink

Many-to-one field ome.model.containers.DatasetImageLink.parent (ome.model.containers.Dataset)

getParent() - Method in class ome.model.containers.FolderImageLink

Many-to-one field ome.model.containers.FolderImageLink.parent (ome.model.containers.Folder)

getParent() - Method in class ome.model.containers.FolderRoiLink

Many-to-one field ome.model.containers.FolderRoiLink.parent (ome.model.containers.Folder)

getParent() - Method in class ome.model.containers.ProjectDatasetLink

Many-to-one field ome.model.containers.ProjectDatasetLink.parent (ome.model.containers.Project)

getParent() - Method in class ome.model.core.PixelsOriginalFileMap

Many-to-one field ome.model.core.PixelsOriginalFileMap.parent (ome.model.core.OriginalFile)

getParent() - Method in class ome.model.fs.FilesetJobLink

Many-to-one field ome.model.fs.FilesetJobLink.parent (ome.model.fs.Fileset)

getParent() - Method in interface ome.model.ILink

getParent() - Method in class ome.model.jobs.JobOriginalFileLink

Many-to-one field ome.model.jobs.JobOriginalFileLink.parent (ome.model.jobs.Job)

getParent() - Method in class ome.model.meta.GroupExperimenterMap

Many-to-one field ome.model.meta.GroupExperimenterMap.parent (ome.model.meta.ExperimenterGroup)

getParent() - Method in class ome.model.meta.ShareMember

Many-to-one field ome.model.meta.ShareMember.parent (ome.model.meta.Share)

getParent() - Method in class ome.model.screen.ScreenPlateLink

Many-to-one field ome.model.screen.ScreenPlateLink.parent (ome.model.screen.Screen)

getParent() - Method in class ome.model.screen.WellReagentLink

Many-to-one field ome.model.screen.WellReagentLink.parent (ome.model.screen.Well)

getParentFolder() - Method in class ome.model.containers.Folder

Many-to-one field ome.model.containers.Folder.parentFolder (ome.model.containers.Folder)

getPartial() - Method in class ome.model.core.Image

Simple field ome.model.core.Image.partial (java.lang.Boolean)

getPasswordHash(Long) - Method in interface ome.util.SqlAction

getPasswordHash(Long) - Method in class ome.util.SqlAction.Impl

getPath() - Method in class ome.model.acquisition.OTF

Simple field ome.model.acquisition.OTF.path (java.lang.String)

getPath() - Method in class ome.model.core.OriginalFile

Simple field ome.model.core.OriginalFile.path (java.lang.String)

getPerm1() - Method in class ome.model.internal.Permissions

getPermissions() - Method in class ome.model.acquisition.Detector.Details

getPermissions() - Method in class ome.model.acquisition.DetectorSettings.Details

getPermissions() - Method in class ome.model.acquisition.Dichroic.Details

getPermissions() - Method in class ome.model.acquisition.Filter.Details

getPermissions() - Method in class ome.model.acquisition.FilterSet.Details

getPermissions() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details

getPermissions() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details

getPermissions() - Method in class ome.model.acquisition.ImagingEnvironment.Details

getPermissions() - Method in class ome.model.acquisition.Instrument.Details

getPermissions() - Method in class ome.model.acquisition.LightPath.Details

getPermissions() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details

getPermissions() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details

getPermissions() - Method in class ome.model.acquisition.LightSettings.Details

getPermissions() - Method in class ome.model.acquisition.LightSource.Details

getPermissions() - Method in class ome.model.acquisition.Microscope.Details

getPermissions() - Method in class ome.model.acquisition.Objective.Details

getPermissions() - Method in class ome.model.acquisition.ObjectiveSettings.Details

getPermissions() - Method in class ome.model.acquisition.OTF.Details

getPermissions() - Method in class ome.model.acquisition.StageLabel.Details

getPermissions() - Method in class ome.model.acquisition.TransmittanceRange.Details

getPermissions() - Method in class ome.model.annotations.Annotation.Details

getPermissions() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.ChannelAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.DatasetAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.DetectorAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.DichroicAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.FilesetAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.FilterAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.FolderAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.ImageAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.LightPathAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.NodeAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.PlateAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.ProjectAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.ReagentAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.RoiAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.ScreenAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.SessionAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.ShapeAnnotationLink.Details

getPermissions() - Method in class ome.model.annotations.WellAnnotationLink.Details

getPermissions() - Method in class ome.model.containers.Dataset.Details

getPermissions() - Method in class ome.model.containers.DatasetImageLink.Details

getPermissions() - Method in class ome.model.containers.Folder.Details

getPermissions() - Method in class ome.model.containers.FolderImageLink.Details

getPermissions() - Method in class ome.model.containers.FolderRoiLink.Details

getPermissions() - Method in class ome.model.containers.Project.Details

getPermissions() - Method in class ome.model.containers.ProjectDatasetLink.Details

getPermissions() - Method in class ome.model.core.Channel.Details

getPermissions() - Method in class ome.model.core.Image.Details

getPermissions() - Method in class ome.model.core.LogicalChannel.Details

getPermissions() - Method in class ome.model.core.OriginalFile.Details

getPermissions() - Method in class ome.model.core.Pixels.Details

getPermissions() - Method in class ome.model.core.PixelsOriginalFileMap.Details

getPermissions() - Method in class ome.model.core.PlaneInfo.Details

getPermissions() - Method in class ome.model.display.ChannelBinding.Details

getPermissions() - Method in class ome.model.display.CodomainMapContext.Details

getPermissions() - Method in class ome.model.display.ProjectionDef.Details

getPermissions() - Method in class ome.model.display.QuantumDef.Details

getPermissions() - Method in class ome.model.display.RenderingDef.Details

getPermissions() - Method in class ome.model.display.Thumbnail.Details

getPermissions() - Method in class ome.model.enums.AcquisitionMode.Details

getPermissions() - Method in class ome.model.enums.AdminPrivilege.Details

getPermissions() - Method in class ome.model.enums.ArcType.Details

getPermissions() - Method in class ome.model.enums.Binning.Details

getPermissions() - Method in class ome.model.enums.ChecksumAlgorithm.Details

getPermissions() - Method in class ome.model.enums.ContrastMethod.Details

getPermissions() - Method in class ome.model.enums.Correction.Details

getPermissions() - Method in class ome.model.enums.DetectorType.Details

getPermissions() - Method in class ome.model.enums.DimensionOrder.Details

getPermissions() - Method in class ome.model.enums.EventType.Details

getPermissions() - Method in class ome.model.enums.ExperimentType.Details

getPermissions() - Method in class ome.model.enums.Family.Details

getPermissions() - Method in class ome.model.enums.FilamentType.Details

getPermissions() - Method in class ome.model.enums.FilterType.Details

getPermissions() - Method in class ome.model.enums.Format.Details

getPermissions() - Method in class ome.model.enums.Illumination.Details

getPermissions() - Method in class ome.model.enums.Immersion.Details

getPermissions() - Method in class ome.model.enums.LaserMedium.Details

getPermissions() - Method in class ome.model.enums.LaserType.Details

getPermissions() - Method in class ome.model.enums.Medium.Details

getPermissions() - Method in class ome.model.enums.MicrobeamManipulationType.Details

getPermissions() - Method in class ome.model.enums.MicroscopeType.Details

getPermissions() - Method in class ome.model.enums.PhotometricInterpretation.Details

getPermissions() - Method in class ome.model.enums.PixelsType.Details

getPermissions() - Method in class ome.model.enums.ProjectionAxis.Details

getPermissions() - Method in class ome.model.enums.ProjectionType.Details

getPermissions() - Method in class ome.model.enums.Pulse.Details

getPermissions() - Method in class ome.model.enums.RenderingModel.Details

getPermissions() - Method in class ome.model.experiment.Experiment.Details

getPermissions() - Method in class ome.model.experiment.MicrobeamManipulation.Details

getPermissions() - Method in class ome.model.fs.Fileset.Details

getPermissions() - Method in class ome.model.fs.FilesetEntry.Details

getPermissions() - Method in class ome.model.fs.FilesetJobLink.Details

getPermissions() - Method in interface ome.model.IDetails

getPermissions() - Method in class ome.model.internal.Details

Permissions is a component embedded into the Details component.

getPermissions() - Method in class ome.model.internal.Link.Details

getPermissions() - Method in class ome.model.jobs.Job.Details

getPermissions() - Method in class ome.model.jobs.JobOriginalFileLink.Details

getPermissions() - Method in class ome.model.jobs.JobStatus.Details

getPermissions() - Method in class ome.model.meta.DBPatch.Details

getPermissions() - Method in class ome.model.meta.Event.Details

getPermissions() - Method in class ome.model.meta.EventLog.Details

getPermissions() - Method in class ome.model.meta.Experimenter.Details

getPermissions() - Method in class ome.model.meta.ExperimenterGroup.Details

getPermissions() - Method in class ome.model.meta.ExternalInfo.Details

getPermissions() - Method in class ome.model.meta.GroupExperimenterMap.Details

getPermissions() - Method in class ome.model.meta.Namespace.Details

getPermissions() - Method in class ome.model.meta.Node.Details

getPermissions() - Method in class ome.model.meta.Session.Details

getPermissions() - Method in class ome.model.meta.ShareMember.Details

getPermissions() - Method in class ome.model.roi.AffineTransform.Details

getPermissions() - Method in class ome.model.roi.Roi.Details

getPermissions() - Method in class ome.model.roi.Shape.Details

getPermissions() - Method in class ome.model.screen.Plate.Details

getPermissions() - Method in class ome.model.screen.PlateAcquisition.Details

getPermissions() - Method in class ome.model.screen.Reagent.Details

getPermissions() - Method in class ome.model.screen.Screen.Details

getPermissions() - Method in class ome.model.screen.ScreenPlateLink.Details

getPermissions() - Method in class ome.model.screen.Well.Details

getPermissions() - Method in class ome.model.screen.WellReagentLink.Details

getPermissions() - Method in class ome.model.screen.WellSample.Details

getPermissions() - Method in class ome.model.stats.StatsInfo.Details

getPhotometricInterpretation() - Method in class ome.model.core.LogicalChannel

Many-to-one field ome.model.core.LogicalChannel.photometricInterpretation (ome.model.enums.PhotometricInterpretation)

getPhysicalSizeX() - Method in class ome.model.core.Pixels

Enum-mapped unit-based field ome.model.core.Pixels.physicalSizeX (ome.model.units.Length)

getPhysicalSizeY() - Method in class ome.model.core.Pixels

Enum-mapped unit-based field ome.model.core.Pixels.physicalSizeY (ome.model.units.Length)

getPhysicalSizeZ() - Method in class ome.model.core.Pixels

Enum-mapped unit-based field ome.model.core.Pixels.physicalSizeZ (ome.model.units.Length)

getPinHoleSize() - Method in class ome.model.core.LogicalChannel

Enum-mapped unit-based field ome.model.core.LogicalChannel.pinHoleSize (ome.model.units.Length)

getPixels() - Method in class ome.model.core.Channel

Many-to-one field ome.model.core.Channel.pixels (ome.model.core.Pixels)

getPixels() - Method in class ome.model.core.Image

returns pixels .

getPixels(int) - Method in class ome.model.core.Image

Gets the ome.model.core.Pixels at the given index.

getPixels() - Method in class ome.model.core.PlaneInfo

Many-to-one field ome.model.core.PlaneInfo.pixels (ome.model.core.Pixels)

getPixels() - Method in class ome.model.display.RenderingDef

Many-to-one field ome.model.display.RenderingDef.pixels (ome.model.core.Pixels)

getPixels() - Method in class ome.model.display.Thumbnail

Many-to-one field ome.model.display.Thumbnail.pixels (ome.model.core.Pixels)

getPixels() - Method in class ome.model.roi.Mask

Many-to-one field ome.model.roi.Mask.pixels (ome.model.core.Pixels)

getPixelsFileMaps() - Method in class ome.model.core.OriginalFile

returns pixelsFileMaps .

getPixelsFileMaps() - Method in class ome.model.core.Pixels

returns pixelsFileMaps .

getPixelsFileMapsCountPerOwner() - Method in class ome.model.core.OriginalFile

If fetched, returns the count(*) of ome.model.core.PixelsOriginalFileMap that a user has.

getPixelsFileMapsCountPerOwner() - Method in class ome.model.core.Pixels

If fetched, returns the count(*) of ome.model.core.PixelsOriginalFileMap that a user has.

getPixelsId() - Method in exception ome.conditions.MissingPyramidException

getPixelsNamePathRepo(long) - Method in class ome.util.actions.PostgresSqlAction

getPixelsNamePathRepo(long) - Method in interface ome.util.SqlAction

Retrieves the name, path and repo for the given pixels set.

getPixelsType() - Method in class ome.model.acquisition.OTF

Many-to-one field ome.model.acquisition.OTF.pixelsType (ome.model.enums.PixelsType)

getPixelsType() - Method in class ome.model.core.Pixels

Many-to-one field ome.model.core.Pixels.pixelsType (ome.model.enums.PixelsType)

getPixelValue(int) - Method in class ome.util.PixelData

Returns the pixel intensity value of the pixel at a given offset within the backing buffer.

getPixelValueDirect(int) - Method in class ome.util.PixelData

Returns the pixel intensity value of the pixel at a given offset within the backing buffer.

getPlaneInfo() - Method in class ome.model.core.Pixels

returns planeInfo .

getPlanePrevious() - Method in class ome.model.display.PlaneSlicingContext

Simple field ome.model.display.PlaneSlicingContext.planePrevious (java.lang.Integer)

getPlaneSelected() - Method in class ome.model.display.PlaneSlicingContext

Simple field ome.model.display.PlaneSlicingContext.planeSelected (java.lang.Integer)

getPlate() - Method in class ome.model.screen.PlateAcquisition

Many-to-one field ome.model.screen.PlateAcquisition.plate (ome.model.screen.Plate)

getPlate() - Method in class ome.model.screen.Well

Many-to-one field ome.model.screen.Well.plate (ome.model.screen.Plate)

getPlateAcquisition() - Method in class ome.model.screen.WellSample

Many-to-one field ome.model.screen.WellSample.plateAcquisition (ome.model.screen.PlateAcquisition)

getPlateAcquisitions() - Method in class ome.model.screen.Plate

returns plateAcquisitions .

getPlateLinks() - Method in class ome.model.screen.Screen

returns plateLinks .

getPlateLinksCountPerOwner() - Method in class ome.model.screen.Screen

If fetched, returns the count(*) of ome.model.screen.ScreenPlateLink that a user has.

getPockelCell() - Method in class ome.model.acquisition.Laser

Simple field ome.model.acquisition.Laser.pockelCell (java.lang.Boolean)

getPockelCellSetting() - Method in class ome.model.core.LogicalChannel

Simple field ome.model.core.LogicalChannel.pockelCellSetting (java.lang.Integer)

getPoints() - Method in class ome.model.roi.Polygon

Simple field ome.model.roi.Polygon.points (java.lang.String)

getPoints() - Method in class ome.model.roi.Polyline

Simple field ome.model.roi.Polyline.points (java.lang.String)

getPositionX() - Method in class ome.model.acquisition.StageLabel

Enum-mapped unit-based field ome.model.acquisition.StageLabel.positionX (ome.model.units.Length)

getPositionX() - Method in class ome.model.core.PlaneInfo

Enum-mapped unit-based field ome.model.core.PlaneInfo.positionX (ome.model.units.Length)

getPositionY() - Method in class ome.model.acquisition.StageLabel

Enum-mapped unit-based field ome.model.acquisition.StageLabel.positionY (ome.model.units.Length)

getPositionY() - Method in class ome.model.core.PlaneInfo

Enum-mapped unit-based field ome.model.core.PlaneInfo.positionY (ome.model.units.Length)

getPositionZ() - Method in class ome.model.acquisition.StageLabel

Enum-mapped unit-based field ome.model.acquisition.StageLabel.positionZ (ome.model.units.Length)

getPositionZ() - Method in class ome.model.core.PlaneInfo

Enum-mapped unit-based field ome.model.core.PlaneInfo.positionZ (ome.model.units.Length)

getPosX() - Method in class ome.model.screen.WellSample

Enum-mapped unit-based field ome.model.screen.WellSample.posX (ome.model.units.Length)

getPosY() - Method in class ome.model.screen.WellSample

Enum-mapped unit-based field ome.model.screen.WellSample.posY (ome.model.units.Length)

getPower() - Method in class ome.model.acquisition.LightSource

Enum-mapped unit-based field ome.model.acquisition.LightSource.power (ome.model.units.Power)

getPreviousPatch() - Method in class ome.model.meta.DBPatch

Simple field ome.model.meta.DBPatch.previousPatch (java.lang.Integer)

getPreviousVersion() - Method in class ome.model.meta.DBPatch

Simple field ome.model.meta.DBPatch.previousVersion (java.lang.String)

getPrimaryChannel() - Method in class ome.model.core.Pixels

Gets the first element of channels which can be interpreted as the primary or default element in some situations.

getPrimaryChannelBinding() - Method in class ome.model.display.RenderingDef

Gets the first element of waveRendering which can be interpreted as the primary or default element in some situations.

getPrimaryCodomainMapContext() - Method in class ome.model.display.ChannelBinding

Gets the first element of spatialDomainEnhancement which can be interpreted as the primary or default element in some situations.

getPrimaryFilesetEntry() - Method in class ome.model.fs.Fileset

Gets the first element of usedFiles which can be interpreted as the primary or default element in some situations.

getPrimaryFilesetJobLink() - Method in class ome.model.fs.Fileset

Gets the first element of jobLinks which can be interpreted as the primary or default element in some situations.

getPrimaryGroupExperimenterMap() - Method in class ome.model.meta.Experimenter

Gets the first element of groupExperimenterMap which can be interpreted as the primary or default element in some situations.

getPrimaryLightPathExcitationFilterLink() - Method in class ome.model.acquisition.LightPath

Gets the first element of excitationFilterLink which can be interpreted as the primary or default element in some situations.

getPrimaryPixels() - Method in class ome.model.core.Image

Gets the first element of pixels which can be interpreted as the primary or default element in some situations.

getPrimaryProjectionDef() - Method in class ome.model.display.RenderingDef

Gets the first element of projections which can be interpreted as the primary or default element in some situations.

getPrimaryShape() - Method in class ome.model.roi.Roi

Gets the first element of shapes which can be interpreted as the primary or default element in some situations.

getPrimaryWellSample() - Method in class ome.model.screen.Well

Gets the first element of wellSamples which can be interpreted as the primary or default element in some situations.

getProjectionDef(int) - Method in class ome.model.display.RenderingDef

Gets the ome.model.display.ProjectionDef at the given index.

getProjections() - Method in class ome.model.display.RenderingDef

returns projections .

getProjectLinks() - Method in class ome.model.containers.Dataset

returns projectLinks .

getProjectLinksCountPerOwner() - Method in class ome.model.containers.Dataset

If fetched, returns the count(*) of ome.model.containers.ProjectDatasetLink that a user has.

getProtocolDescription() - Method in class ome.model.screen.Screen

Simple field ome.model.screen.Screen.protocolDescription (java.lang.String)

getProtocolIdentifier() - Method in class ome.model.screen.Screen

Simple field ome.model.screen.Screen.protocolIdentifier (java.lang.String)

getPulse() - Method in class ome.model.acquisition.Laser

Many-to-one field ome.model.acquisition.Laser.pulse (ome.model.enums.Pulse)

getPump() - Method in class ome.model.acquisition.Laser

Many-to-one field ome.model.acquisition.Laser.pump (ome.model.acquisition.LightSource)

getQuantityClass() - Method in class ome.model.units.GenericEnumType

getQuantization() - Method in class ome.model.display.RenderingDef

Many-to-one field ome.model.display.RenderingDef.quantization (ome.model.display.QuantumDef)

getRadiusX() - Method in class ome.model.roi.Ellipse

Simple field ome.model.roi.Ellipse.radiusX (java.lang.Double)

getRadiusY() - Method in class ome.model.roi.Ellipse

Simple field ome.model.roi.Ellipse.radiusY (java.lang.Double)

getRdf() - Method in class ome.util.RdfPrinter

getReadOutRate() - Method in class ome.model.acquisition.DetectorSettings

Enum-mapped unit-based field ome.model.acquisition.DetectorSettings.readOutRate (ome.model.units.Frequency)

getReagentIdentifier() - Method in class ome.model.screen.Reagent

Simple field ome.model.screen.Reagent.reagentIdentifier (java.lang.String)

getReagentLinks() - Method in class ome.model.screen.Well

returns reagentLinks .

getReagentLinksCountPerOwner() - Method in class ome.model.screen.Well

If fetched, returns the count(*) of ome.model.screen.WellReagentLink that a user has.

getReagents() - Method in class ome.model.screen.Screen

returns reagents .

getReagentSetDescription() - Method in class ome.model.screen.Screen

Simple field ome.model.screen.Screen.reagentSetDescription (java.lang.String)

getReagentSetIdentifier() - Method in class ome.model.screen.Screen

Simple field ome.model.screen.Screen.reagentSetIdentifier (java.lang.String)

getRed() - Method in class ome.model.core.Channel

Simple field ome.model.core.Channel.red (java.lang.Integer)

getRed() - Method in class ome.model.display.ChannelBinding

Simple field ome.model.display.ChannelBinding.red (java.lang.Integer)

getRed() - Method in class ome.model.screen.Well

Simple field ome.model.screen.Well.red (java.lang.Integer)

getRef() - Method in class ome.model.display.Thumbnail

Simple field ome.model.display.Thumbnail.ref (java.lang.String)

getRefractiveIndex() - Method in class ome.model.acquisition.ObjectiveSettings

Simple field ome.model.acquisition.ObjectiveSettings.refractiveIndex (java.lang.Double)

getRelatedTo() - Method in class ome.model.core.Pixels

Deprecated.

getRenderingDef() - Method in class ome.model.display.ChannelBinding

Many-to-one field ome.model.display.ChannelBinding.renderingDef (ome.model.display.RenderingDef)

getRenderingDef() - Method in class ome.model.display.ProjectionDef

Many-to-one field ome.model.display.ProjectionDef.renderingDef (ome.model.display.RenderingDef)

getRepetitionRate() - Method in class ome.model.acquisition.Laser

Enum-mapped unit-based field ome.model.acquisition.Laser.repetitionRate (ome.model.units.Frequency)

getReplacement() - Method in class ome.model.internal.GraphHolder

a replacement is a managed entity instance which has the same primary key as this instance.

getRepo() - Method in class ome.model.core.OriginalFile

Simple field ome.model.core.OriginalFile.repo (java.lang.String)

getRestrictions() - Method in class ome.model.internal.Permissions

getReverse() - Method in class ome.model.display.ReverseIntensityContext

Simple field ome.model.display.ReverseIntensityContext.reverse (java.lang.Boolean)

getRoi() - Method in class ome.model.roi.Shape

Many-to-one field ome.model.roi.Shape.roi (ome.model.roi.Roi)

getRoiLinks() - Method in class ome.model.containers.Folder

returns roiLinks .

getRoiLinksCountPerOwner() - Method in class ome.model.containers.Folder

If fetched, returns the count(*) of ome.model.containers.FolderRoiLink that a user has.

getRois() - Method in class ome.model.core.Image

returns rois .

getRow() - Method in class ome.model.screen.Well

Simple field ome.model.screen.Well.row (java.lang.Integer)

getRowNamingConvention() - Method in class ome.model.screen.Plate

Simple field ome.model.screen.Plate.rowNamingConvention (java.lang.String)

getRows() - Method in class ome.model.screen.Plate

Simple field ome.model.screen.Plate.rows (java.lang.Integer)

getSamplesPerPixel() - Method in class ome.model.core.LogicalChannel

Simple field ome.model.core.LogicalChannel.samplesPerPixel (java.lang.Integer)

getScale() - Method in class ome.model.meta.Node

Simple field ome.model.meta.Node.scale (java.lang.Integer)

getScheduledFor() - Method in class ome.model.jobs.Job

Simple field ome.model.jobs.Job.scheduledFor (java.sql.Timestamp)

getScreen() - Method in class ome.model.screen.Reagent

Many-to-one field ome.model.screen.Reagent.screen (ome.model.screen.Screen)

getScreenLinks() - Method in class ome.model.screen.Plate

returns screenLinks .

getScreenLinksCountPerOwner() - Method in class ome.model.screen.Plate

If fetched, returns the count(*) of ome.model.screen.ScreenPlateLink that a user has.

getSerialNumber() - Method in class ome.model.acquisition.Detector

Simple field ome.model.acquisition.Detector.serialNumber (java.lang.String)

getSerialNumber() - Method in class ome.model.acquisition.Dichroic

Simple field ome.model.acquisition.Dichroic.serialNumber (java.lang.String)

getSerialNumber() - Method in class ome.model.acquisition.Filter

Simple field ome.model.acquisition.Filter.serialNumber (java.lang.String)

getSerialNumber() - Method in class ome.model.acquisition.FilterSet

Simple field ome.model.acquisition.FilterSet.serialNumber (java.lang.String)

getSerialNumber() - Method in class ome.model.acquisition.LightSource

Simple field ome.model.acquisition.LightSource.serialNumber (java.lang.String)

getSerialNumber() - Method in class ome.model.acquisition.Microscope

Simple field ome.model.acquisition.Microscope.serialNumber (java.lang.String)

getSerialNumber() - Method in class ome.model.acquisition.Objective

Simple field ome.model.acquisition.Objective.serialNumber (java.lang.String)

getSeries() - Method in class ome.model.core.Image

Simple field ome.model.core.Image.series (java.lang.Integer)

getSession() - Method in class ome.model.meta.Event

Many-to-one field ome.model.meta.Event.session (ome.model.meta.Session)

getSessions() - Method in class ome.model.meta.Node

returns sessions .

getSettings() - Method in class ome.model.core.Pixels

returns settings .

getSha1() - Method in class ome.model.core.Pixels

Simple field ome.model.core.Pixels.sha1 (java.lang.String)

getShape(int) - Method in class ome.model.roi.Roi

Gets the ome.model.roi.Shape at the given index.

getShapeIds(long) - Method in class ome.util.actions.PostgresSqlAction

getShapeIds(long) - Method in interface ome.util.SqlAction

getShapes() - Method in class ome.model.roi.Roi

returns shapes .

getShareData(List<Long>) - Method in interface ome.util.SqlAction

Returns a map of Share ID to Share data blob.

getShareData(List<Long>) - Method in class ome.util.SqlAction.Impl

getSignificantBits() - Method in class ome.model.core.Pixels

Simple field ome.model.core.Pixels.significantBits (java.lang.Integer)

getSize() - Method in class ome.model.core.OriginalFile

Simple field ome.model.core.OriginalFile.size (java.lang.Long)

getSizeC() - Method in class ome.model.core.Pixels

Simple field ome.model.core.Pixels.sizeC (java.lang.Integer)

getSizeT() - Method in class ome.model.core.Pixels

Simple field ome.model.core.Pixels.sizeT (java.lang.Integer)

getSizeX() - Method in class ome.model.acquisition.OTF

Simple field ome.model.acquisition.OTF.sizeX (java.lang.Integer)

getSizeX() - Method in class ome.model.core.Pixels

Simple field ome.model.core.Pixels.sizeX (java.lang.Integer)

getSizeX() - Method in class ome.model.display.Thumbnail

Simple field ome.model.display.Thumbnail.sizeX (java.lang.Integer)

getSizeY() - Method in class ome.model.acquisition.OTF

Simple field ome.model.acquisition.OTF.sizeY (java.lang.Integer)

getSizeY() - Method in class ome.model.core.Pixels

Simple field ome.model.core.Pixels.sizeY (java.lang.Integer)

getSizeY() - Method in class ome.model.display.Thumbnail

Simple field ome.model.display.Thumbnail.sizeY (java.lang.Integer)

getSizeZ() - Method in class ome.model.core.Pixels

Simple field ome.model.core.Pixels.sizeZ (java.lang.Integer)

getSource() - Method in class ome.model.roi.Roi

Many-to-one field ome.model.roi.Roi.source (ome.model.core.OriginalFile)

getSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding

returns spatialDomainEnhancement .

getStageLabel() - Method in class ome.model.core.Image

Many-to-one field ome.model.core.Image.stageLabel (ome.model.acquisition.StageLabel)

getStarted() - Method in class ome.model.jobs.Job

Simple field ome.model.jobs.Job.started (java.sql.Timestamp)

getStarted() - Method in class ome.model.meta.Session

Simple field ome.model.meta.Session.started (java.sql.Timestamp)

getStartPlane() - Method in class ome.model.display.ProjectionDef

Simple field ome.model.display.ProjectionDef.startPlane (java.lang.Integer)

getStartTime() - Method in class ome.model.screen.PlateAcquisition

Simple field ome.model.screen.PlateAcquisition.startTime (java.sql.Timestamp)

getStartTime() - Method in class ome.parameters.Parameters

getStatsInfo() - Method in class ome.model.core.Channel

Many-to-one field ome.model.core.Channel.statsInfo (ome.model.stats.StatsInfo)

getStatus() - Method in class ome.model.jobs.Job

Many-to-one field ome.model.jobs.Job.status (ome.model.jobs.JobStatus)

getStatus() - Method in class ome.model.meta.Event

Simple field ome.model.meta.Event.status (java.lang.String)

getStatus() - Method in class ome.model.screen.Plate

Simple field ome.model.screen.Plate.status (java.lang.String)

getStatus() - Method in class ome.model.screen.Well

Simple field ome.model.screen.Well.status (java.lang.String)

getStepping() - Method in class ome.model.display.ProjectionDef

Simple field ome.model.display.ProjectionDef.stepping (java.lang.Integer)

getString(String) - Static method in class ome.util.actions.PsqlStrings

getStrokeColor() - Method in class ome.model.roi.Shape

Simple field ome.model.roi.Shape.strokeColor (java.lang.Integer)

getStrokeDashArray() - Method in class ome.model.roi.Shape

Simple field ome.model.roi.Shape.strokeDashArray (java.lang.String)

getStrokeWidth() - Method in class ome.model.roi.Shape

Enum-mapped unit-based field ome.model.roi.Shape.strokeWidth (ome.model.units.Length)

getSubmitted() - Method in class ome.model.jobs.Job

Simple field ome.model.jobs.Job.submitted (java.sql.Timestamp)

getSudoer() - Method in class ome.model.meta.Session

Many-to-one field ome.model.meta.Session.sudoer (ome.model.meta.Experimenter)

getSymbol() - Method in enum ome.model.enums.UnitsElectricPotential

getSymbol() - Method in enum ome.model.enums.UnitsFrequency

getSymbol() - Method in enum ome.model.enums.UnitsLength

getSymbol() - Method in enum ome.model.enums.UnitsPower

getSymbol() - Method in enum ome.model.enums.UnitsPressure

getSymbol() - Method in enum ome.model.enums.UnitsTemperature

getSymbol() - Method in enum ome.model.enums.UnitsTime

getSymbol() - Method in interface ome.model.units.UnitEnum

getTemperature() - Method in class ome.model.acquisition.ImagingEnvironment

Enum-mapped unit-based field ome.model.acquisition.ImagingEnvironment.temperature (ome.model.units.Temperature)

getTemplatePrefix() - Method in class ome.model.fs.Fileset

Simple field ome.model.fs.Fileset.templatePrefix (java.lang.String)

getTermValue() - Method in class ome.model.annotations.TermAnnotation

Simple field ome.model.annotations.TermAnnotation.termValue (java.lang.String)

getTextValue() - Method in class ome.model.annotations.TextAnnotation

Simple field ome.model.annotations.TextAnnotation.textValue (java.lang.String)

getTextValue() - Method in class ome.model.roi.Ellipse

Simple field ome.model.roi.Ellipse.textValue (java.lang.String)

getTextValue() - Method in class ome.model.roi.Label

Simple field ome.model.roi.Label.textValue (java.lang.String)

getTextValue() - Method in class ome.model.roi.Line

Simple field ome.model.roi.Line.textValue (java.lang.String)

getTextValue() - Method in class ome.model.roi.Mask

Simple field ome.model.roi.Mask.textValue (java.lang.String)

getTextValue() - Method in class ome.model.roi.Path

Deprecated.

Simple field ome.model.roi.Path.textValue (java.lang.String)

getTextValue() - Method in class ome.model.roi.Point

Simple field ome.model.roi.Point.textValue (java.lang.String)

getTextValue() - Method in class ome.model.roi.Polygon

Simple field ome.model.roi.Polygon.textValue (java.lang.String)

getTextValue() - Method in class ome.model.roi.Polyline

Simple field ome.model.roi.Polyline.textValue (java.lang.String)

getTextValue() - Method in class ome.model.roi.Rectangle

Simple field ome.model.roi.Rectangle.textValue (java.lang.String)

getTheC() - Method in class ome.model.core.PlaneInfo

Simple field ome.model.core.PlaneInfo.theC (java.lang.Integer)

getTheC() - Method in class ome.model.roi.Shape

Simple field ome.model.roi.Shape.theC (java.lang.Integer)

getTheT() - Method in class ome.model.core.PlaneInfo

Simple field ome.model.core.PlaneInfo.theT (java.lang.Integer)

getTheT() - Method in class ome.model.roi.Shape

Simple field ome.model.roi.Shape.theT (java.lang.Integer)

getTheZ() - Method in class ome.model.core.PlaneInfo

Simple field ome.model.core.PlaneInfo.theZ (java.lang.Integer)

getTheZ() - Method in class ome.model.roi.Shape

Simple field ome.model.roi.Shape.theZ (java.lang.Integer)

getThreadIdentifier() - Static method in class ome.util.Utils

Returns a String which can be used to correlate log messages.

getThumbnails() - Method in class ome.model.core.Pixels

returns thumbnails .

getTime() - Method in class ome.model.meta.Event

Simple field ome.model.meta.Event.time (java.sql.Timestamp)

getTimeIncrement() - Method in class ome.model.core.Pixels

Enum-mapped unit-based field ome.model.core.Pixels.timeIncrement (ome.model.units.Time)

getTimepoint() - Method in class ome.model.screen.WellSample

Simple field ome.model.screen.WellSample.timepoint (java.sql.Timestamp)

getTimeToIdle() - Method in class ome.model.meta.Session

Simple field ome.model.meta.Session.timeToIdle (java.lang.Long)

getTimeToLive() - Method in class ome.model.meta.Session

Simple field ome.model.meta.Session.timeToLive (java.lang.Long)

getTimeValue() - Method in class ome.model.annotations.TimestampAnnotation

Simple field ome.model.annotations.TimestampAnnotation.timeValue (java.sql.Timestamp)

getTransform() - Method in class ome.model.roi.Shape

Many-to-one field ome.model.roi.Shape.transform (ome.model.roi.AffineTransform)

getTransmittance() - Method in class ome.model.acquisition.TransmittanceRange

Simple field ome.model.acquisition.TransmittanceRange.transmittance (java.lang.Double)

getTransmittanceRange() - Method in class ome.model.acquisition.Filter

Many-to-one field ome.model.acquisition.Filter.transmittanceRange (ome.model.acquisition.TransmittanceRange)

getTuneable() - Method in class ome.model.acquisition.Laser

Simple field ome.model.acquisition.Laser.tuneable (java.lang.Boolean)

getType() - Method in class ome.model.acquisition.Arc

Many-to-one field ome.model.acquisition.Arc.type (ome.model.enums.ArcType)

getType() - Method in class ome.model.acquisition.Detector

Many-to-one field ome.model.acquisition.Detector.type (ome.model.enums.DetectorType)

getType() - Method in class ome.model.acquisition.Filament

Many-to-one field ome.model.acquisition.Filament.type (ome.model.enums.FilamentType)

getType() - Method in class ome.model.acquisition.Filter

Many-to-one field ome.model.acquisition.Filter.type (ome.model.enums.FilterType)

getType() - Method in class ome.model.acquisition.Laser

Many-to-one field ome.model.acquisition.Laser.type (ome.model.enums.LaserType)

getType() - Method in class ome.model.acquisition.Microscope

Many-to-one field ome.model.acquisition.Microscope.type (ome.model.enums.MicroscopeType)

getType() - Method in class ome.model.display.ProjectionDef

Many-to-one field ome.model.display.ProjectionDef.type (ome.model.enums.ProjectionType)

getType() - Method in class ome.model.experiment.Experiment

Many-to-one field ome.model.experiment.Experiment.type (ome.model.enums.ExperimentType)

getType() - Method in class ome.model.experiment.MicrobeamManipulation

Many-to-one field ome.model.experiment.MicrobeamManipulation.type (ome.model.enums.MicrobeamManipulationType)

getType() - Method in class ome.model.jobs.Job

Simple field ome.model.jobs.Job.type (java.lang.String)

getType() - Method in class ome.model.meta.Event

Many-to-one field ome.model.meta.Event.type (ome.model.enums.EventType)

getType() - Method in class ome.model.screen.Screen

Simple field ome.model.screen.Screen.type (java.lang.String)

getType() - Method in class ome.model.screen.Well

Simple field ome.model.screen.Well.type (java.lang.String)

getUnit() - Method in class ome.model.units.ElectricPotential

Many-to-one field ome.model.units.ElectricPotential.unit (ome.model.enums.UnitsElectricPotential).

getUnit() - Method in class ome.model.units.Frequency

Many-to-one field ome.model.units.Frequency.unit (ome.model.enums.UnitsFrequency).

getUnit() - Method in class ome.model.units.Length

Many-to-one field ome.model.units.Length.unit (ome.model.enums.UnitsLength).

getUnit() - Method in class ome.model.units.Power

Many-to-one field ome.model.units.Power.unit (ome.model.enums.UnitsPower).

getUnit() - Method in class ome.model.units.Pressure

Many-to-one field ome.model.units.Pressure.unit (ome.model.enums.UnitsPressure).

getUnit() - Method in class ome.model.units.Temperature

Many-to-one field ome.model.units.Temperature.unit (ome.model.enums.UnitsTemperature).

getUnit() - Method in class ome.model.units.Time

Many-to-one field ome.model.units.Time.unit (ome.model.enums.UnitsTime).

getUnit() - Method in interface ome.model.units.Unit

getUp() - Method in class ome.model.meta.Node

Simple field ome.model.meta.Node.up (java.sql.Timestamp)

getUpdateEvent() - Method in class ome.model.acquisition.Detector.Details

getUpdateEvent() - Method in class ome.model.acquisition.DetectorSettings.Details

getUpdateEvent() - Method in class ome.model.acquisition.Dichroic.Details

getUpdateEvent() - Method in class ome.model.acquisition.Filter.Details

getUpdateEvent() - Method in class ome.model.acquisition.FilterSet.Details

getUpdateEvent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details

getUpdateEvent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details

getUpdateEvent() - Method in class ome.model.acquisition.ImagingEnvironment.Details

getUpdateEvent() - Method in class ome.model.acquisition.Instrument.Details

getUpdateEvent() - Method in class ome.model.acquisition.LightPath.Details

getUpdateEvent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details

getUpdateEvent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details

getUpdateEvent() - Method in class ome.model.acquisition.LightSettings.Details

getUpdateEvent() - Method in class ome.model.acquisition.LightSource.Details

getUpdateEvent() - Method in class ome.model.acquisition.Microscope.Details

getUpdateEvent() - Method in class ome.model.acquisition.Objective.Details

getUpdateEvent() - Method in class ome.model.acquisition.ObjectiveSettings.Details

getUpdateEvent() - Method in class ome.model.acquisition.OTF.Details

getUpdateEvent() - Method in class ome.model.acquisition.StageLabel.Details

getUpdateEvent() - Method in class ome.model.acquisition.TransmittanceRange.Details

getUpdateEvent() - Method in class ome.model.annotations.Annotation.Details

getUpdateEvent() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.ChannelAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.DatasetAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.DetectorAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.DichroicAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.FilesetAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.FilterAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.FolderAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.ImageAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.LightPathAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.NodeAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.PlateAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.ProjectAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.ReagentAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.RoiAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.ScreenAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.SessionAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.ShapeAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.annotations.WellAnnotationLink.Details

getUpdateEvent() - Method in class ome.model.containers.Dataset.Details

getUpdateEvent() - Method in class ome.model.containers.DatasetImageLink.Details

getUpdateEvent() - Method in class ome.model.containers.Folder.Details

getUpdateEvent() - Method in class ome.model.containers.FolderImageLink.Details

getUpdateEvent() - Method in class ome.model.containers.FolderRoiLink.Details

getUpdateEvent() - Method in class ome.model.containers.Project.Details

getUpdateEvent() - Method in class ome.model.containers.ProjectDatasetLink.Details

getUpdateEvent() - Method in class ome.model.core.Channel.Details

getUpdateEvent() - Method in class ome.model.core.Image.Details

getUpdateEvent() - Method in class ome.model.core.LogicalChannel.Details

getUpdateEvent() - Method in class ome.model.core.OriginalFile.Details

getUpdateEvent() - Method in class ome.model.core.Pixels.Details

getUpdateEvent() - Method in class ome.model.core.PixelsOriginalFileMap.Details

getUpdateEvent() - Method in class ome.model.core.PlaneInfo.Details

getUpdateEvent() - Method in class ome.model.display.ChannelBinding.Details

getUpdateEvent() - Method in class ome.model.display.CodomainMapContext.Details

getUpdateEvent() - Method in class ome.model.display.ProjectionDef.Details

getUpdateEvent() - Method in class ome.model.display.QuantumDef.Details

getUpdateEvent() - Method in class ome.model.display.RenderingDef.Details

getUpdateEvent() - Method in class ome.model.display.Thumbnail.Details

getUpdateEvent() - Method in class ome.model.experiment.Experiment.Details

getUpdateEvent() - Method in class ome.model.experiment.MicrobeamManipulation.Details

getUpdateEvent() - Method in class ome.model.fs.Fileset.Details

getUpdateEvent() - Method in class ome.model.fs.FilesetEntry.Details

getUpdateEvent() - Method in class ome.model.fs.FilesetJobLink.Details

getUpdateEvent() - Method in class ome.model.internal.Details

getUpdateEvent() - Method in class ome.model.internal.Link.Details

getUpdateEvent() - Method in class ome.model.jobs.Job.Details

getUpdateEvent() - Method in class ome.model.jobs.JobOriginalFileLink.Details

getUpdateEvent() - Method in class ome.model.meta.ExternalInfo.Details

Overrides Details.getUpdateEvent() to always return null.

getUpdateEvent() - Method in class ome.model.roi.AffineTransform.Details

getUpdateEvent() - Method in class ome.model.roi.Roi.Details

getUpdateEvent() - Method in class ome.model.roi.Shape.Details

getUpdateEvent() - Method in class ome.model.screen.Plate.Details

getUpdateEvent() - Method in class ome.model.screen.PlateAcquisition.Details

getUpdateEvent() - Method in class ome.model.screen.Reagent.Details

getUpdateEvent() - Method in class ome.model.screen.Screen.Details

getUpdateEvent() - Method in class ome.model.screen.ScreenPlateLink.Details

getUpdateEvent() - Method in class ome.model.screen.Well.Details

getUpdateEvent() - Method in class ome.model.screen.WellReagentLink.Details

getUpdateEvent() - Method in class ome.model.screen.WellSample.Details

getUpdateEvent() - Method in class ome.model.stats.StatsInfo.Details

getUpperLimit() - Method in class ome.model.display.PlaneSlicingContext

Simple field ome.model.display.PlaneSlicingContext.upperLimit (java.lang.Integer)

getUsedFiles() - Method in class ome.model.fs.Fileset

returns usedFiles .

getUserAgent() - Method in class ome.model.meta.Session

Simple field ome.model.meta.Session.userAgent (java.lang.String)

getUserEmailByOmeName(String) - Method in interface ome.util.SqlAction

Load the email address for the given user.

getUserEmailByOmeName(String) - Method in class ome.util.SqlAction.Impl

getUserEmailsByGroup(long) - Method in interface ome.util.SqlAction

Load all the non-empty email addresses for users in a given group.

getUserEmailsByGroup(long) - Method in class ome.util.SqlAction.Impl

getUserGroups(String) - Method in interface ome.util.SqlAction

getUserGroups(String) - Method in class ome.util.SqlAction.Impl

getUserId(String) - Method in interface ome.util.SqlAction

Get the user's ID

getUserId(String) - Method in class ome.util.SqlAction.Impl

getUserIP() - Method in class ome.model.meta.Session

Deprecated.

getUsername() - Method in class ome.model.jobs.Job

Simple field ome.model.jobs.Job.username (java.lang.String)

getUsername(long) - Method in interface ome.util.SqlAction

Get the user's name

getUsername(long) - Method in class ome.util.SqlAction.Impl

getUserPrettyNameByOmeName(String) - Method in interface ome.util.SqlAction

Load the pretty name for the given user.

getUserPrettyNameByOmeName(String) - Method in class ome.util.SqlAction.Impl

getUuid() - Method in class ome.model.meta.ExternalInfo

Simple field ome.model.meta.ExternalInfo.uuid (java.lang.String)

getUuid() - Method in class ome.model.meta.Node

Simple field ome.model.meta.Node.uuid (java.lang.String)

getUuid() - Method in class ome.model.meta.Session

Simple field ome.model.meta.Session.uuid (java.lang.String)

getValue() - Method in class ome.model.enums.AcquisitionMode

Simple field ome.model.enums.AcquisitionMode.value (java.lang.String)

getValue() - Method in class ome.model.enums.AdminPrivilege

Simple field ome.model.enums.AdminPrivilege.value (java.lang.String)

getValue() - Method in class ome.model.enums.ArcType

Simple field ome.model.enums.ArcType.value (java.lang.String)

getValue() - Method in class ome.model.enums.Binning

Simple field ome.model.enums.Binning.value (java.lang.String)

getValue() - Method in class ome.model.enums.ChecksumAlgorithm

Simple field ome.model.enums.ChecksumAlgorithm.value (java.lang.String)

getValue() - Method in class ome.model.enums.ContrastMethod

Simple field ome.model.enums.ContrastMethod.value (java.lang.String)

getValue() - Method in class ome.model.enums.Correction

Simple field ome.model.enums.Correction.value (java.lang.String)

getValue() - Method in class ome.model.enums.DetectorType

Simple field ome.model.enums.DetectorType.value (java.lang.String)

getValue() - Method in class ome.model.enums.DimensionOrder

Simple field ome.model.enums.DimensionOrder.value (java.lang.String)

getValue() - Method in class ome.model.enums.EventType

Simple field ome.model.enums.EventType.value (java.lang.String)

getValue() - Method in class ome.model.enums.ExperimentType

Simple field ome.model.enums.ExperimentType.value (java.lang.String)

getValue() - Method in class ome.model.enums.Family

Simple field ome.model.enums.Family.value (java.lang.String)

getValue() - Method in class ome.model.enums.FilamentType

Simple field ome.model.enums.FilamentType.value (java.lang.String)

getValue() - Method in class ome.model.enums.FilterType

Simple field ome.model.enums.FilterType.value (java.lang.String)

getValue() - Method in class ome.model.enums.Format

Simple field ome.model.enums.Format.value (java.lang.String)

getValue() - Method in class ome.model.enums.Illumination

Simple field ome.model.enums.Illumination.value (java.lang.String)

getValue() - Method in class ome.model.enums.Immersion

Simple field ome.model.enums.Immersion.value (java.lang.String)

getValue() - Method in class ome.model.enums.LaserMedium

Simple field ome.model.enums.LaserMedium.value (java.lang.String)

getValue() - Method in class ome.model.enums.LaserType

Simple field ome.model.enums.LaserType.value (java.lang.String)

getValue() - Method in class ome.model.enums.Medium

Simple field ome.model.enums.Medium.value (java.lang.String)

getValue() - Method in class ome.model.enums.MicrobeamManipulationType

Simple field ome.model.enums.MicrobeamManipulationType.value (java.lang.String)

getValue() - Method in class ome.model.enums.MicroscopeType

Simple field ome.model.enums.MicroscopeType.value (java.lang.String)

getValue() - Method in class ome.model.enums.PhotometricInterpretation

Simple field ome.model.enums.PhotometricInterpretation.value (java.lang.String)

getValue() - Method in class ome.model.enums.PixelsType

Simple field ome.model.enums.PixelsType.value (java.lang.String)

getValue() - Method in class ome.model.enums.ProjectionAxis

Simple field ome.model.enums.ProjectionAxis.value (java.lang.String)

getValue() - Method in class ome.model.enums.ProjectionType

Simple field ome.model.enums.ProjectionType.value (java.lang.String)

getValue() - Method in class ome.model.enums.Pulse

Simple field ome.model.enums.Pulse.value (java.lang.String)

getValue() - Method in class ome.model.enums.RenderingModel

Simple field ome.model.enums.RenderingModel.value (java.lang.String)

getValue() - Method in interface ome.model.IEnum

the single String value associated with this instance.

getValue() - Method in class ome.model.internal.NamedValue

getValue() - Method in class ome.model.jobs.JobStatus

Simple field ome.model.jobs.JobStatus.value (java.lang.String)

getValue() - Method in class ome.model.units.ElectricPotential

value of this unit-field.

getValue() - Method in class ome.model.units.Frequency

value of this unit-field.

getValue() - Method in class ome.model.units.Length

value of this unit-field.

getValue() - Method in class ome.model.units.Power

value of this unit-field.

getValue() - Method in class ome.model.units.Pressure

value of this unit-field.

getValue() - Method in class ome.model.units.Temperature

value of this unit-field.

getValue() - Method in class ome.model.units.Time

value of this unit-field.

getValue() - Method in interface ome.model.units.Unit

getVersion() - Method in class ome.model.acquisition.Detector

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.DetectorSettings

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.Dichroic

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.Filter

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.FilterSet

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.ImagingEnvironment

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.Instrument

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.LightPath

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.LightSettings

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.LightSource

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.Microscope

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.Objective

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.ObjectiveSettings

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.OTF

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.StageLabel

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.acquisition.TransmittanceRange

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.Annotation

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.AnnotationAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.ChannelAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.DatasetAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.DetectorAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.DichroicAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.ExperimenterAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.FilesetAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.FilterAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.FolderAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.ImageAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.InstrumentAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.LightPathAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.LightSourceAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.NamespaceAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.NodeAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.ObjectiveAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.OriginalFileAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.PlateAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.ProjectAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.ReagentAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.RoiAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.ScreenAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.SessionAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.ShapeAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.annotations.WellAnnotationLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.containers.Dataset

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.containers.DatasetImageLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.containers.Folder

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.containers.FolderImageLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.containers.FolderRoiLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.containers.Project

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.containers.ProjectDatasetLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.core.Channel

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.core.Image

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.core.LogicalChannel

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.core.OriginalFile

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.core.Pixels

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.core.PixelsOriginalFileMap

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.core.PlaneInfo

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.display.ChannelBinding

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.display.CodomainMapContext

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.display.ProjectionDef

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.display.QuantumDef

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.display.RenderingDef

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.display.Thumbnail

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.experiment.Experiment

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.experiment.MicrobeamManipulation

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.fs.Fileset

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.fs.FilesetEntry

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.fs.FilesetJobLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in interface ome.model.IMutable

optimistic-lock version.

getVersion() - Method in class ome.model.internal.Link

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.jobs.Job

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.jobs.JobOriginalFileLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.meta.Experimenter

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.meta.ExperimenterGroup

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.meta.GroupExperimenterMap

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.meta.Namespace

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.meta.Node

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.meta.Session

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.meta.ShareMember

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.roi.AffineTransform

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.roi.Roi

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.roi.Shape

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.screen.Plate

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.screen.PlateAcquisition

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.screen.Reagent

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.screen.Screen

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.screen.ScreenPlateLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.screen.Well

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.screen.WellReagentLink

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.screen.WellSample

This version number is controlled by the database for optimisitic locking.

getVersion() - Method in class ome.model.stats.StatsInfo

This version number is controlled by the database for optimisitic locking.

getVersionInfo() - Method in class ome.model.jobs.MetadataImportJob

getVersionInfo() - Method in class ome.model.jobs.UploadJob

getVoltage() - Method in class ome.model.acquisition.Detector

Enum-mapped unit-based field ome.model.acquisition.Detector.voltage (ome.model.units.ElectricPotential)

getVoltage() - Method in class ome.model.acquisition.DetectorSettings

Enum-mapped unit-based field ome.model.acquisition.DetectorSettings.voltage (ome.model.units.ElectricPotential)

getWaveIncrement() - Method in class ome.model.core.Pixels

Simple field ome.model.core.Pixels.waveIncrement (java.lang.Integer)

getWavelength() - Method in class ome.model.acquisition.Laser

Enum-mapped unit-based field ome.model.acquisition.Laser.wavelength (ome.model.units.Length)

getWavelength() - Method in class ome.model.acquisition.LightSettings

Enum-mapped unit-based field ome.model.acquisition.LightSettings.wavelength (ome.model.units.Length)

getWaveRendering() - Method in class ome.model.display.RenderingDef

returns waveRendering .

getWaveStart() - Method in class ome.model.core.Pixels

Simple field ome.model.core.Pixels.waveStart (java.lang.Integer)

getWell() - Method in class ome.model.screen.WellSample

Many-to-one field ome.model.screen.WellSample.well (ome.model.screen.Well)

getWellLinks() - Method in class ome.model.screen.Reagent

returns wellLinks .

getWellLinksCountPerOwner() - Method in class ome.model.screen.Reagent

If fetched, returns the count(*) of ome.model.screen.WellReagentLink that a user has.

getWellOriginX() - Method in class ome.model.screen.Plate

Enum-mapped unit-based field ome.model.screen.Plate.wellOriginX (ome.model.units.Length)

getWellOriginY() - Method in class ome.model.screen.Plate

Enum-mapped unit-based field ome.model.screen.Plate.wellOriginY (ome.model.units.Length)

getWells() - Method in class ome.model.screen.Plate

returns wells .

getWellSample() - Method in class ome.model.screen.PlateAcquisition

returns wellSample .

getWellSample(int) - Method in class ome.model.screen.Well

Gets the ome.model.screen.WellSample at the given index.

getWellSamples() - Method in class ome.model.core.Image

returns wellSamples .

getWellSamples() - Method in class ome.model.screen.Well

returns wellSamples .

getWidth() - Method in class ome.model.roi.Mask

Simple field ome.model.roi.Mask.width (java.lang.Double)

getWidth() - Method in class ome.model.roi.Rectangle

Simple field ome.model.roi.Rectangle.width (java.lang.Double)

getWorkingDistance() - Method in class ome.model.acquisition.Objective

Enum-mapped unit-based field ome.model.acquisition.Objective.workingDistance (ome.model.units.Length)

getX() - Method in class ome.model.roi.Ellipse

Simple field ome.model.roi.Ellipse.x (java.lang.Double)

getX() - Method in class ome.model.roi.Label

Simple field ome.model.roi.Label.x (java.lang.Double)

getX() - Method in class ome.model.roi.Mask

Simple field ome.model.roi.Mask.x (java.lang.Double)

getX() - Method in class ome.model.roi.Point

Simple field ome.model.roi.Point.x (java.lang.Double)

getX() - Method in class ome.model.roi.Rectangle

Simple field ome.model.roi.Rectangle.x (java.lang.Double)

getX1() - Method in class ome.model.roi.Line

Simple field ome.model.roi.Line.x1 (java.lang.Double)

getX2() - Method in class ome.model.roi.Line

Simple field ome.model.roi.Line.x2 (java.lang.Double)

getXend() - Method in class ome.model.display.ContrastStretchingContext

Simple field ome.model.display.ContrastStretchingContext.xend (java.lang.Integer)

getXstart() - Method in class ome.model.display.ContrastStretchingContext

Simple field ome.model.display.ContrastStretchingContext.xstart (java.lang.Integer)

getY() - Method in class ome.model.roi.Ellipse

Simple field ome.model.roi.Ellipse.y (java.lang.Double)

getY() - Method in class ome.model.roi.Label

Simple field ome.model.roi.Label.y (java.lang.Double)

getY() - Method in class ome.model.roi.Mask

Simple field ome.model.roi.Mask.y (java.lang.Double)

getY() - Method in class ome.model.roi.Point

Simple field ome.model.roi.Point.y (java.lang.Double)

getY() - Method in class ome.model.roi.Rectangle

Simple field ome.model.roi.Rectangle.y (java.lang.Double)

getY1() - Method in class ome.model.roi.Line

Simple field ome.model.roi.Line.y1 (java.lang.Double)

getY2() - Method in class ome.model.roi.Line

Simple field ome.model.roi.Line.y2 (java.lang.Double)

getYend() - Method in class ome.model.display.ContrastStretchingContext

Simple field ome.model.display.ContrastStretchingContext.yend (java.lang.Integer)

getYstart() - Method in class ome.model.display.ContrastStretchingContext

Simple field ome.model.display.ContrastStretchingContext.ystart (java.lang.Integer)

getZoom() - Method in class ome.model.acquisition.Detector

Simple field ome.model.acquisition.Detector.zoom (java.lang.Double)

getZoom() - Method in class ome.model.acquisition.DetectorSettings

Simple field ome.model.acquisition.DetectorSettings.zoom (java.lang.Double)

globalMax - Variable in class ome.model.stats.StatsInfo

GLOBALMAX - Static variable in class ome.model.stats.StatsInfo

globalMin - Variable in class ome.model.stats.StatsInfo

GLOBALMIN - Static variable in class ome.model.stats.StatsInfo

grant(Permissions.Role, Permissions.Right...) - Method in class ome.model.internal.Permissions

turns on the rights for the given role.

grantAll(Permissions) - Method in class ome.model.internal.Permissions

takes a permissions instance and ORs it with the current instance.

GraphHolder - Class in ome.model.internal

holds information regarding the graph to which an IObject belongs.

GraphHolder() - Constructor for class ome.model.internal.GraphHolder

green - Variable in class ome.model.core.Channel

GREEN - Static variable in class ome.model.core.Channel

green - Variable in class ome.model.display.ChannelBinding

GREEN - Static variable in class ome.model.display.ChannelBinding

green - Variable in class ome.model.screen.Well

GREEN - Static variable in class ome.model.screen.Well

GROUP - Static variable in class ome.model.internal.Details

group - Variable in class ome.model.meta.Share

GROUP - Static variable in class ome.model.meta.Share

group(long) - Method in class ome.parameters.Filter

group() - Method in class ome.parameters.Filter

group() - Method in class ome.parameters.Parameters

GROUP_FILTER - Static variable in class ome.model.acquisition.Arc

GROUP_FILTER - Static variable in class ome.model.acquisition.Detector

GROUP_FILTER - Static variable in class ome.model.acquisition.DetectorSettings

GROUP_FILTER - Static variable in class ome.model.acquisition.Dichroic

GROUP_FILTER - Static variable in class ome.model.acquisition.Filament

GROUP_FILTER - Static variable in class ome.model.acquisition.Filter

GROUP_FILTER - Static variable in class ome.model.acquisition.FilterSet

GROUP_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink

GROUP_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink

GROUP_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource

GROUP_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment

GROUP_FILTER - Static variable in class ome.model.acquisition.Instrument

GROUP_FILTER - Static variable in class ome.model.acquisition.Laser

GROUP_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode

GROUP_FILTER - Static variable in class ome.model.acquisition.LightPath

GROUP_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink

GROUP_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink

GROUP_FILTER - Static variable in class ome.model.acquisition.LightSettings

GROUP_FILTER - Static variable in class ome.model.acquisition.LightSource

GROUP_FILTER - Static variable in class ome.model.acquisition.Microscope

GROUP_FILTER - Static variable in class ome.model.acquisition.Objective

GROUP_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings

GROUP_FILTER - Static variable in class ome.model.acquisition.OTF

GROUP_FILTER - Static variable in class ome.model.acquisition.StageLabel

GROUP_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange

GROUP_FILTER - Static variable in class ome.model.annotations.Annotation

GROUP_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.BasicAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.CommentAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.FileAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.ListAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.LongAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.MapAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.NumericAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.TagAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.TermAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.TextAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.TypeAnnotation

GROUP_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink

GROUP_FILTER - Static variable in class ome.model.annotations.XmlAnnotation

GROUP_FILTER - Static variable in class ome.model.containers.Dataset

GROUP_FILTER - Static variable in class ome.model.containers.DatasetImageLink

GROUP_FILTER - Static variable in class ome.model.containers.Folder

GROUP_FILTER - Static variable in class ome.model.containers.FolderImageLink

GROUP_FILTER - Static variable in class ome.model.containers.FolderRoiLink

GROUP_FILTER - Static variable in class ome.model.containers.Project

GROUP_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink

GROUP_FILTER - Static variable in class ome.model.core.Channel

GROUP_FILTER - Static variable in class ome.model.core.Image

GROUP_FILTER - Static variable in class ome.model.core.LogicalChannel

GROUP_FILTER - Static variable in class ome.model.core.OriginalFile

GROUP_FILTER - Static variable in class ome.model.core.Pixels

GROUP_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap

GROUP_FILTER - Static variable in class ome.model.core.PlaneInfo

GROUP_FILTER - Static variable in class ome.model.display.ChannelBinding

GROUP_FILTER - Static variable in class ome.model.display.CodomainMapContext

GROUP_FILTER - Static variable in class ome.model.display.ContrastStretchingContext

GROUP_FILTER - Static variable in class ome.model.display.PlaneSlicingContext

GROUP_FILTER - Static variable in class ome.model.display.ProjectionDef

GROUP_FILTER - Static variable in class ome.model.display.QuantumDef

GROUP_FILTER - Static variable in class ome.model.display.RenderingDef

GROUP_FILTER - Static variable in class ome.model.display.ReverseIntensityContext

GROUP_FILTER - Static variable in class ome.model.display.Thumbnail

GROUP_FILTER - Static variable in class ome.model.experiment.Experiment

GROUP_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation

GROUP_FILTER - Static variable in class ome.model.fs.Fileset

GROUP_FILTER - Static variable in class ome.model.fs.FilesetEntry

GROUP_FILTER - Static variable in class ome.model.fs.FilesetJobLink

GROUP_FILTER - Static variable in class ome.model.internal.Link

GROUP_FILTER - Static variable in class ome.model.jobs.ImportJob

Deprecated.

GROUP_FILTER - Static variable in class ome.model.jobs.IndexingJob

GROUP_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob

GROUP_FILTER - Static variable in class ome.model.jobs.Job

GROUP_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink

GROUP_FILTER - Static variable in class ome.model.jobs.MetadataImportJob

GROUP_FILTER - Static variable in class ome.model.jobs.ParseJob

GROUP_FILTER - Static variable in class ome.model.jobs.PixelDataJob

GROUP_FILTER - Static variable in class ome.model.jobs.ScriptJob

GROUP_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob

GROUP_FILTER - Static variable in class ome.model.jobs.UploadJob

GROUP_FILTER - Static variable in class ome.model.meta.ExternalInfo

GROUP_FILTER - Static variable in class ome.model.roi.AffineTransform

GROUP_FILTER - Static variable in class ome.model.roi.Ellipse

GROUP_FILTER - Static variable in class ome.model.roi.Label

GROUP_FILTER - Static variable in class ome.model.roi.Line

GROUP_FILTER - Static variable in class ome.model.roi.Mask

GROUP_FILTER - Static variable in class ome.model.roi.Path

Deprecated.

GROUP_FILTER - Static variable in class ome.model.roi.Point

GROUP_FILTER - Static variable in class ome.model.roi.Polygon

GROUP_FILTER - Static variable in class ome.model.roi.Polyline

GROUP_FILTER - Static variable in class ome.model.roi.Rectangle

GROUP_FILTER - Static variable in class ome.model.roi.Roi

GROUP_FILTER - Static variable in class ome.model.roi.Shape

GROUP_FILTER - Static variable in class ome.model.screen.Plate

GROUP_FILTER - Static variable in class ome.model.screen.PlateAcquisition

GROUP_FILTER - Static variable in class ome.model.screen.Reagent

GROUP_FILTER - Static variable in class ome.model.screen.Screen

GROUP_FILTER - Static variable in class ome.model.screen.ScreenPlateLink

GROUP_FILTER - Static variable in class ome.model.screen.Well

GROUP_FILTER - Static variable in class ome.model.screen.WellReagentLink

GROUP_FILTER - Static variable in class ome.model.screen.WellSample

GROUP_FILTER - Static variable in class ome.model.stats.StatsInfo

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen

GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well

GROUP_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel

GROUP_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels

GROUP_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder

GROUP_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project

GROUP_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image

GROUP_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument

GROUP_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument

GROUP_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter

GROUP_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet

GROUP_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath

GROUP_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter

GROUP_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet

GROUP_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath

GROUP_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile

GROUP_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument

GROUP_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument

GROUP_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image

GROUP_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi

GROUP_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset

GROUP_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder

GROUP_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset

GROUP_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset

GROUP_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument

GROUP_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation

GROUP_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment

GROUP_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument

GROUP_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job

GROUP_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument

GROUP_FILTER_PIXELS - Static variable in class ome.model.core.Image

GROUP_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile

GROUP_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels

GROUP_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels

GROUP_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate

GROUP_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen

GROUP_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef

GROUP_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset

GROUP_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well

GROUP_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen

GROUP_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder

GROUP_FILTER_ROIS - Static variable in class ome.model.core.Image

GROUP_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate

GROUP_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels

GROUP_FILTER_SHAPES - Static variable in class ome.model.roi.Roi

GROUP_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding

GROUP_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels

GROUP_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset

GROUP_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef

GROUP_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent

GROUP_FILTER_WELLS - Static variable in class ome.model.screen.Plate

GROUP_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition

GROUP_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image

GROUP_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well

GROUP_ID - Static variable in class ome.parameters.Parameters

named parameter "groupId".

GROUP_IMMUTABLE - Static variable in class ome.model.internal.Permissions

R_R___ : user and group can only read

GROUP_PRIVATE - Static variable in class ome.model.internal.Permissions

RWRW__ : user and group can read and write

GROUP_READABLE - Static variable in class ome.model.internal.Permissions

RWR___ : user can read and write, group can read

GROUP_WRITEABLE - Static variable in class ome.model.internal.Permissions

RWRWR_ : user and group can read and write, world can read

groupExperimenterMap - Variable in class ome.model.meta.Experimenter

GROUPEXPERIMENTERMAP - Static variable in class ome.model.meta.Experimenter

groupExperimenterMap - Variable in class ome.model.meta.ExperimenterGroup

GROUPEXPERIMENTERMAP - Static variable in class ome.model.meta.ExperimenterGroup

GroupExperimenterMap - Class in ome.model.meta

GroupExperimenterMap() - Constructor for class ome.model.meta.GroupExperimenterMap

GroupExperimenterMap(Long) - Constructor for class ome.model.meta.GroupExperimenterMap

GroupExperimenterMap(Long, boolean) - Constructor for class ome.model.meta.GroupExperimenterMap

Main constructor.

GroupExperimenterMap(IObject, IObject, Boolean) - Constructor for class ome.model.meta.GroupExperimenterMap

GroupExperimenterMap.Details - Class in ome.model.meta

groupId - Variable in class ome.util.SqlAction.DeleteLog

groupInfoFor(String, long) - Method in interface ome.util.SqlAction

Return a mostly unloaded ExperimenterGroup object containing only the id, name, and permissions.

groupInfoFor(String, long) - Method in class ome.util.SqlAction.Impl

groupname - Variable in class ome.model.jobs.Job

GROUPNAME - Static variable in class ome.model.jobs.Job

GroupSecurityViolation - Exception in ome.conditions

Extension of SecurityViolation which signifies that the violation in question goes against the group-based permissions introduced in 4.2.

GroupSecurityViolation(String) - Constructor for exception ome.conditions.GroupSecurityViolation

grp(long) - Method in class ome.parameters.Parameters

H

handlePotentialPgArrayJarError(UncategorizedSQLException) - Method in class ome.util.actions.PostgresSqlAction

If postgresql is installed with an older jdbc jar that is on the bootstrap classpath, then it's possible that the use of pgarrays will fail (I think).

hash - Variable in class ome.model.core.OriginalFile

HASH - Static variable in class ome.model.core.OriginalFile

hashCode() - Method in class ome.model.enums.AcquisitionMode

hashCode() - Method in class ome.model.enums.AdminPrivilege

hashCode() - Method in class ome.model.enums.ArcType

hashCode() - Method in class ome.model.enums.Binning

hashCode() - Method in class ome.model.enums.ChecksumAlgorithm

hashCode() - Method in class ome.model.enums.ContrastMethod

hashCode() - Method in class ome.model.enums.Correction

hashCode() - Method in class ome.model.enums.DetectorType

hashCode() - Method in class ome.model.enums.DimensionOrder

hashCode() - Method in class ome.model.enums.EventType

hashCode() - Method in class ome.model.enums.ExperimentType

hashCode() - Method in class ome.model.enums.Family

hashCode() - Method in class ome.model.enums.FilamentType

hashCode() - Method in class ome.model.enums.FilterType

hashCode() - Method in class ome.model.enums.Format

hashCode() - Method in class ome.model.enums.Illumination

hashCode() - Method in class ome.model.enums.Immersion

hashCode() - Method in class ome.model.enums.LaserMedium

hashCode() - Method in class ome.model.enums.LaserType

hashCode() - Method in class ome.model.enums.Medium

hashCode() - Method in class ome.model.enums.MicrobeamManipulationType

hashCode() - Method in class ome.model.enums.MicroscopeType

hashCode() - Method in class ome.model.enums.PhotometricInterpretation

hashCode() - Method in class ome.model.enums.PixelsType

hashCode() - Method in class ome.model.enums.ProjectionAxis

hashCode() - Method in class ome.model.enums.ProjectionType

hashCode() - Method in class ome.model.enums.Pulse

hashCode() - Method in class ome.model.enums.RenderingModel

hashCode() - Method in class ome.model.internal.NamedValue

hashCode() - Method in class ome.model.jobs.JobStatus

hashCode() - Method in class ome.model.units.ElectricPotential

hashCode() - Method in class ome.model.units.Frequency

hashCode(Object) - Method in class ome.model.units.GenericEnumType

hashCode() - Method in class ome.model.units.Length

hashCode() - Method in class ome.model.units.Power

hashCode() - Method in class ome.model.units.Pressure

hashCode() - Method in class ome.model.units.Temperature

hashCode() - Method in class ome.model.units.Time

hashCode() - Method in class ome.parameters.QueryParameter

hashCode() - Method in class ome.util.LSID

hasher - Variable in class ome.model.core.OriginalFile

HASHER - Static variable in class ome.model.core.OriginalFile

hasNext() - Method in class ome.util.EmptyIterator

hasntSeen(Object) - Method in class ome.util.ContextFilter

hasToken() - Method in class ome.model.internal.GraphHolder

tests if this GraphHolder contains a Token reference.

hasUnicodeUnits() - Method in interface ome.util.SqlAction

hasUnicodeUnits() - Method in class ome.util.SqlAction.Impl

height - Variable in class ome.model.roi.Mask

HEIGHT - Static variable in class ome.model.roi.Mask

height - Variable in class ome.model.roi.Rectangle

HEIGHT - Static variable in class ome.model.roi.Rectangle

humidity - Variable in class ome.model.acquisition.ImagingEnvironment

HUMIDITY - Static variable in class ome.model.acquisition.ImagingEnvironment

I

IAnnotated - Interface in ome.model

IAnnotationLink - Interface in ome.model

extension of ILink for marking links whose child field is an Annotation.

ID - Static variable in class ome.model.acquisition.Detector

id - Variable in class ome.model.acquisition.Detector

ID - Static variable in class ome.model.acquisition.DetectorSettings

id - Variable in class ome.model.acquisition.DetectorSettings

ID - Static variable in class ome.model.acquisition.Dichroic

id - Variable in class ome.model.acquisition.Dichroic

ID - Static variable in class ome.model.acquisition.Filter

id - Variable in class ome.model.acquisition.Filter

ID - Static variable in class ome.model.acquisition.FilterSet

id - Variable in class ome.model.acquisition.FilterSet

ID - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink

id - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink

ID - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink

id - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink

ID - Static variable in class ome.model.acquisition.ImagingEnvironment

id - Variable in class ome.model.acquisition.ImagingEnvironment

ID - Static variable in class ome.model.acquisition.Instrument

id - Variable in class ome.model.acquisition.Instrument

ID - Static variable in class ome.model.acquisition.LightPath

id - Variable in class ome.model.acquisition.LightPath

ID - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink

id - Variable in class ome.model.acquisition.LightPathEmissionFilterLink

ID - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink

id - Variable in class ome.model.acquisition.LightPathExcitationFilterLink

ID - Static variable in class ome.model.acquisition.LightSettings

id - Variable in class ome.model.acquisition.LightSettings

ID - Static variable in class ome.model.acquisition.LightSource

id - Variable in class ome.model.acquisition.LightSource

ID - Static variable in class ome.model.acquisition.Microscope

id - Variable in class ome.model.acquisition.Microscope

ID - Static variable in class ome.model.acquisition.Objective

id - Variable in class ome.model.acquisition.Objective

ID - Static variable in class ome.model.acquisition.ObjectiveSettings

id - Variable in class ome.model.acquisition.ObjectiveSettings

ID - Static variable in class ome.model.acquisition.OTF

id - Variable in class ome.model.acquisition.OTF

ID - Static variable in class ome.model.acquisition.StageLabel

id - Variable in class ome.model.acquisition.StageLabel

ID - Static variable in class ome.model.acquisition.TransmittanceRange

id - Variable in class ome.model.acquisition.TransmittanceRange

ID - Static variable in class ome.model.annotations.Annotation

id - Variable in class ome.model.annotations.Annotation

ID - Static variable in class ome.model.annotations.AnnotationAnnotationLink

id - Variable in class ome.model.annotations.AnnotationAnnotationLink

ID - Static variable in class ome.model.annotations.ChannelAnnotationLink

id - Variable in class ome.model.annotations.ChannelAnnotationLink

ID - Static variable in class ome.model.annotations.DatasetAnnotationLink

id - Variable in class ome.model.annotations.DatasetAnnotationLink

ID - Static variable in class ome.model.annotations.DetectorAnnotationLink

id - Variable in class ome.model.annotations.DetectorAnnotationLink

ID - Static variable in class ome.model.annotations.DichroicAnnotationLink

id - Variable in class ome.model.annotations.DichroicAnnotationLink

ID - Static variable in class ome.model.annotations.ExperimenterAnnotationLink

id - Variable in class ome.model.annotations.ExperimenterAnnotationLink

ID - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

id - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

ID - Static variable in class ome.model.annotations.FilesetAnnotationLink

id - Variable in class ome.model.annotations.FilesetAnnotationLink

ID - Static variable in class ome.model.annotations.FilterAnnotationLink

id - Variable in class ome.model.annotations.FilterAnnotationLink

ID - Static variable in class ome.model.annotations.FolderAnnotationLink

id - Variable in class ome.model.annotations.FolderAnnotationLink

ID - Static variable in class ome.model.annotations.ImageAnnotationLink

id - Variable in class ome.model.annotations.ImageAnnotationLink

ID - Static variable in class ome.model.annotations.InstrumentAnnotationLink

id - Variable in class ome.model.annotations.InstrumentAnnotationLink

ID - Static variable in class ome.model.annotations.LightPathAnnotationLink

id - Variable in class ome.model.annotations.LightPathAnnotationLink

ID - Static variable in class ome.model.annotations.LightSourceAnnotationLink

id - Variable in class ome.model.annotations.LightSourceAnnotationLink

ID - Static variable in class ome.model.annotations.NamespaceAnnotationLink

id - Variable in class ome.model.annotations.NamespaceAnnotationLink

ID - Static variable in class ome.model.annotations.NodeAnnotationLink

id - Variable in class ome.model.annotations.NodeAnnotationLink

ID - Static variable in class ome.model.annotations.ObjectiveAnnotationLink

id - Variable in class ome.model.annotations.ObjectiveAnnotationLink

ID - Static variable in class ome.model.annotations.OriginalFileAnnotationLink

id - Variable in class ome.model.annotations.OriginalFileAnnotationLink

ID - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink

id - Variable in class ome.model.annotations.PlaneInfoAnnotationLink

ID - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

id - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

ID - Static variable in class ome.model.annotations.PlateAnnotationLink

id - Variable in class ome.model.annotations.PlateAnnotationLink

ID - Static variable in class ome.model.annotations.ProjectAnnotationLink

id - Variable in class ome.model.annotations.ProjectAnnotationLink

ID - Static variable in class ome.model.annotations.ReagentAnnotationLink

id - Variable in class ome.model.annotations.ReagentAnnotationLink

ID - Static variable in class ome.model.annotations.RoiAnnotationLink

id - Variable in class ome.model.annotations.RoiAnnotationLink

ID - Static variable in class ome.model.annotations.ScreenAnnotationLink

id - Variable in class ome.model.annotations.ScreenAnnotationLink

ID - Static variable in class ome.model.annotations.SessionAnnotationLink

id - Variable in class ome.model.annotations.SessionAnnotationLink

ID - Static variable in class ome.model.annotations.ShapeAnnotationLink

id - Variable in class ome.model.annotations.ShapeAnnotationLink

ID - Static variable in class ome.model.annotations.WellAnnotationLink

id - Variable in class ome.model.annotations.WellAnnotationLink

ID - Static variable in class ome.model.containers.Dataset

id - Variable in class ome.model.containers.Dataset

ID - Static variable in class ome.model.containers.DatasetImageLink

id - Variable in class ome.model.containers.DatasetImageLink

ID - Static variable in class ome.model.containers.Folder

id - Variable in class ome.model.containers.Folder

ID - Static variable in class ome.model.containers.FolderImageLink

id - Variable in class ome.model.containers.FolderImageLink

ID - Static variable in class ome.model.containers.FolderRoiLink

id - Variable in class ome.model.containers.FolderRoiLink

ID - Static variable in class ome.model.containers.Project

id - Variable in class ome.model.containers.Project

ID - Static variable in class ome.model.containers.ProjectDatasetLink

id - Variable in class ome.model.containers.ProjectDatasetLink

ID - Static variable in class ome.model.core.Channel

id - Variable in class ome.model.core.Channel

ID - Static variable in class ome.model.core.Image

id - Variable in class ome.model.core.Image

ID - Static variable in class ome.model.core.LogicalChannel

id - Variable in class ome.model.core.LogicalChannel

ID - Static variable in class ome.model.core.OriginalFile

id - Variable in class ome.model.core.OriginalFile

ID - Static variable in class ome.model.core.Pixels

id - Variable in class ome.model.core.Pixels

ID - Static variable in class ome.model.core.PixelsOriginalFileMap

id - Variable in class ome.model.core.PixelsOriginalFileMap

ID - Static variable in class ome.model.core.PlaneInfo

id - Variable in class ome.model.core.PlaneInfo

ID - Static variable in class ome.model.display.ChannelBinding

id - Variable in class ome.model.display.ChannelBinding

ID - Static variable in class ome.model.display.CodomainMapContext

id - Variable in class ome.model.display.CodomainMapContext

ID - Static variable in class ome.model.display.ProjectionDef

id - Variable in class ome.model.display.ProjectionDef

ID - Static variable in class ome.model.display.QuantumDef

id - Variable in class ome.model.display.QuantumDef

ID - Static variable in class ome.model.display.RenderingDef

id - Variable in class ome.model.display.RenderingDef

ID - Static variable in class ome.model.display.Thumbnail

id - Variable in class ome.model.display.Thumbnail

ID - Static variable in class ome.model.enums.AcquisitionMode

id - Variable in class ome.model.enums.AcquisitionMode

ID - Static variable in class ome.model.enums.AdminPrivilege

id - Variable in class ome.model.enums.AdminPrivilege

ID - Static variable in class ome.model.enums.ArcType

id - Variable in class ome.model.enums.ArcType

ID - Static variable in class ome.model.enums.Binning

id - Variable in class ome.model.enums.Binning

ID - Static variable in class ome.model.enums.ChecksumAlgorithm

id - Variable in class ome.model.enums.ChecksumAlgorithm

ID - Static variable in class ome.model.enums.ContrastMethod

id - Variable in class ome.model.enums.ContrastMethod

ID - Static variable in class ome.model.enums.Correction

id - Variable in class ome.model.enums.Correction

ID - Static variable in class ome.model.enums.DetectorType

id - Variable in class ome.model.enums.DetectorType

ID - Static variable in class ome.model.enums.DimensionOrder

id - Variable in class ome.model.enums.DimensionOrder

ID - Static variable in class ome.model.enums.EventType

id - Variable in class ome.model.enums.EventType

ID - Static variable in class ome.model.enums.ExperimentType

id - Variable in class ome.model.enums.ExperimentType

ID - Static variable in class ome.model.enums.Family

id - Variable in class ome.model.enums.Family

ID - Static variable in class ome.model.enums.FilamentType

id - Variable in class ome.model.enums.FilamentType

ID - Static variable in class ome.model.enums.FilterType

id - Variable in class ome.model.enums.FilterType

ID - Static variable in class ome.model.enums.Format

id - Variable in class ome.model.enums.Format

ID - Static variable in class ome.model.enums.Illumination

id - Variable in class ome.model.enums.Illumination

ID - Static variable in class ome.model.enums.Immersion

id - Variable in class ome.model.enums.Immersion

ID - Static variable in class ome.model.enums.LaserMedium

id - Variable in class ome.model.enums.LaserMedium

ID - Static variable in class ome.model.enums.LaserType

id - Variable in class ome.model.enums.LaserType

ID - Static variable in class ome.model.enums.Medium

id - Variable in class ome.model.enums.Medium

ID - Static variable in class ome.model.enums.MicrobeamManipulationType

id - Variable in class ome.model.enums.MicrobeamManipulationType

ID - Static variable in class ome.model.enums.MicroscopeType

id - Variable in class ome.model.enums.MicroscopeType

ID - Static variable in class ome.model.enums.PhotometricInterpretation

id - Variable in class ome.model.enums.PhotometricInterpretation

ID - Static variable in class ome.model.enums.PixelsType

id - Variable in class ome.model.enums.PixelsType

ID - Static variable in class ome.model.enums.ProjectionAxis

id - Variable in class ome.model.enums.ProjectionAxis

ID - Static variable in class ome.model.enums.ProjectionType

id - Variable in class ome.model.enums.ProjectionType

ID - Static variable in class ome.model.enums.Pulse

id - Variable in class ome.model.enums.Pulse

ID - Static variable in class ome.model.enums.RenderingModel

id - Variable in class ome.model.enums.RenderingModel

ID - Static variable in class ome.model.experiment.Experiment

id - Variable in class ome.model.experiment.Experiment

ID - Static variable in class ome.model.experiment.MicrobeamManipulation

id - Variable in class ome.model.experiment.MicrobeamManipulation

ID - Static variable in class ome.model.fs.Fileset

id - Variable in class ome.model.fs.Fileset

ID - Static variable in class ome.model.fs.FilesetEntry

id - Variable in class ome.model.fs.FilesetEntry

ID - Static variable in class ome.model.fs.FilesetJobLink

id - Variable in class ome.model.fs.FilesetJobLink

ID - Static variable in class ome.model.internal.Link

id - Variable in class ome.model.internal.Link

ID - Static variable in class ome.model.jobs.Job

id - Variable in class ome.model.jobs.Job

ID - Static variable in class ome.model.jobs.JobOriginalFileLink

id - Variable in class ome.model.jobs.JobOriginalFileLink

ID - Static variable in class ome.model.jobs.JobStatus

id - Variable in class ome.model.jobs.JobStatus

ID - Static variable in class ome.model.meta.DBPatch

id - Variable in class ome.model.meta.DBPatch

ID - Static variable in class ome.model.meta.Event

id - Variable in class ome.model.meta.Event

ID - Static variable in class ome.model.meta.EventLog

id - Variable in class ome.model.meta.EventLog

ID - Static variable in class ome.model.meta.Experimenter

id - Variable in class ome.model.meta.Experimenter

ID - Static variable in class ome.model.meta.ExperimenterGroup

id - Variable in class ome.model.meta.ExperimenterGroup

ID - Static variable in class ome.model.meta.ExternalInfo

id - Variable in class ome.model.meta.ExternalInfo

ID - Static variable in class ome.model.meta.GroupExperimenterMap

id - Variable in class ome.model.meta.GroupExperimenterMap

ID - Static variable in class ome.model.meta.Namespace

id - Variable in class ome.model.meta.Namespace

ID - Static variable in class ome.model.meta.Node

id - Variable in class ome.model.meta.Node

ID - Static variable in class ome.model.meta.Session

id - Variable in class ome.model.meta.Session

ID - Static variable in class ome.model.meta.ShareMember

id - Variable in class ome.model.meta.ShareMember

ID - Static variable in class ome.model.roi.AffineTransform

id - Variable in class ome.model.roi.AffineTransform

ID - Static variable in class ome.model.roi.Roi

id - Variable in class ome.model.roi.Roi

ID - Static variable in class ome.model.roi.Shape

id - Variable in class ome.model.roi.Shape

ID - Static variable in class ome.model.screen.Plate

id - Variable in class ome.model.screen.Plate

ID - Static variable in class ome.model.screen.PlateAcquisition

id - Variable in class ome.model.screen.PlateAcquisition

ID - Static variable in class ome.model.screen.Reagent

id - Variable in class ome.model.screen.Reagent

ID - Static variable in class ome.model.screen.Screen

id - Variable in class ome.model.screen.Screen

ID - Static variable in class ome.model.screen.ScreenPlateLink

id - Variable in class ome.model.screen.ScreenPlateLink

ID - Static variable in class ome.model.screen.Well

id - Variable in class ome.model.screen.Well

ID - Static variable in class ome.model.screen.WellReagentLink

id - Variable in class ome.model.screen.WellReagentLink

ID - Static variable in class ome.model.screen.WellSample

id - Variable in class ome.model.screen.WellSample

ID - Static variable in class ome.model.stats.StatsInfo

id - Variable in class ome.model.stats.StatsInfo

ID - Static variable in class ome.parameters.Parameters

named parameter "id".

IdBlock - Class in ome.util

CBlock implementation which collects ids from IObjects

IdBlock() - Constructor for class ome.util.IdBlock

identical(Permissions) - Method in class ome.model.internal.Permissions

two Permissions instances are identical if they have the same bit representation.

IDetails - Interface in ome.model

simple interface for Details; currently unused.

IdRowMapper() - Constructor for class ome.util.SqlAction.IdRowMapper

IDS - Static variable in class ome.parameters.Parameters

named parameter "ids".

IEnum - Interface in ome.model

interface for all domain enumarations.

IGlobal - Interface in ome.model

marker interface for all global types, which have no IDetails fields other than permissions.

ILink - Interface in ome.model

extension of IObject for building object hierarchies.

illumination - Variable in class ome.model.core.LogicalChannel

ILLUMINATION - Static variable in class ome.model.core.LogicalChannel

Illumination - Class in ome.model.enums

Illumination() - Constructor for class ome.model.enums.Illumination

Illumination(Long) - Constructor for class ome.model.enums.Illumination

Illumination(Long, boolean) - Constructor for class ome.model.enums.Illumination

Main constructor.

Illumination(String) - Constructor for class ome.model.enums.Illumination

Illumination.Details - Class in ome.model.enums

Image - Class in ome.model.core

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Image() - Constructor for class ome.model.core.Image

Image(Long) - Constructor for class ome.model.core.Image

Image(Long, boolean) - Constructor for class ome.model.core.Image

Main constructor.

Image(String) - Constructor for class ome.model.core.Image

image - Variable in class ome.model.core.Pixels

IMAGE - Static variable in class ome.model.core.Pixels

image - Variable in class ome.model.roi.Roi

IMAGE - Static variable in class ome.model.roi.Roi

image - Variable in class ome.model.screen.WellSample

IMAGE - Static variable in class ome.model.screen.WellSample

Image.Details - Class in ome.model.core

ImageAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ImageAnnotationLink() - Constructor for class ome.model.annotations.ImageAnnotationLink

ImageAnnotationLink(Long) - Constructor for class ome.model.annotations.ImageAnnotationLink

ImageAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ImageAnnotationLink

Main constructor.

ImageAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ImageAnnotationLink

ImageAnnotationLink.Details - Class in ome.model.annotations

imageDescription - Variable in class ome.model.jobs.ImportJob

Deprecated.

IMAGEDESCRIPTION - Static variable in class ome.model.jobs.ImportJob

Deprecated.

imageLinks - Variable in class ome.model.containers.Dataset

IMAGELINKS - Static variable in class ome.model.containers.Dataset

imageLinks - Variable in class ome.model.containers.Folder

IMAGELINKS - Static variable in class ome.model.containers.Folder

IMAGELINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset

IMAGELINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder

imageName - Variable in class ome.model.jobs.ImportJob

Deprecated.

IMAGENAME - Static variable in class ome.model.jobs.ImportJob

Deprecated.

images - Variable in class ome.model.fs.Fileset

IMAGES - Static variable in class ome.model.fs.Fileset

ImageUtil - Class in ome.util

Provides helper methods for performing various things on image data.

ImageUtil() - Constructor for class ome.util.ImageUtil

ImagingEnvironment - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ImagingEnvironment() - Constructor for class ome.model.acquisition.ImagingEnvironment

ImagingEnvironment(Long) - Constructor for class ome.model.acquisition.ImagingEnvironment

ImagingEnvironment(Long, boolean) - Constructor for class ome.model.acquisition.ImagingEnvironment

Main constructor.

imagingEnvironment - Variable in class ome.model.core.Image

IMAGINGENVIRONMENT - Static variable in class ome.model.core.Image

ImagingEnvironment.Details - Class in ome.model.acquisition

immersion - Variable in class ome.model.acquisition.Objective

IMMERSION - Static variable in class ome.model.acquisition.Objective

Immersion - Class in ome.model.enums

Immersion() - Constructor for class ome.model.enums.Immersion

Immersion(Long) - Constructor for class ome.model.enums.Immersion

Immersion(Long, boolean) - Constructor for class ome.model.enums.Immersion

Main constructor.

Immersion(String) - Constructor for class ome.model.enums.Immersion

Immersion.Details - Class in ome.model.enums

Impl() - Constructor for class ome.util.SqlAction.Impl

ImportJob - Class in ome.model.jobs

Deprecated.

ImportJob() - Constructor for class ome.model.jobs.ImportJob

Deprecated.

ImportJob(Long) - Constructor for class ome.model.jobs.ImportJob

Deprecated.

ImportJob(Long, boolean) - Constructor for class ome.model.jobs.ImportJob

Deprecated.

Main constructor.

ImportJob(String, String) - Constructor for class ome.model.jobs.ImportJob

Deprecated.

IMutable - Interface in ome.model

interface for all mutable domain objects.

in(String[]) - Method in class ome.util.PixelData

Returns whether or not the pixel data type is is one of the elements in an array.

increment() - Method in class ome.util.Counter

Increment the value of this counter by one.

IndexingJob - Class in ome.model.jobs

IndexingJob() - Constructor for class ome.model.jobs.IndexingJob

IndexingJob(Long) - Constructor for class ome.model.jobs.IndexingJob

IndexingJob(Long, boolean) - Constructor for class ome.model.jobs.IndexingJob

Main constructor.

inputEnd - Variable in class ome.model.display.ChannelBinding

INPUTEND - Static variable in class ome.model.display.ChannelBinding

inputStart - Variable in class ome.model.display.ChannelBinding

INPUTSTART - Static variable in class ome.model.display.ChannelBinding

insertCurrentAdminPrivileges(Iterable<AdminPrivilege>) - Method in class ome.util.SqlAction.Impl

insertCurrentAdminPrivileges(Iterable<AdminPrivilege>) - Method in interface ome.util.SqlAction

Insert the current light administrator privileges for the current transaction.

insertFormat(String) - Method in class ome.util.actions.PostgresSqlAction

Deprecated.

insertFormat(String) - Method in interface ome.util.SqlAction

Deprecated.

insertFormatSql - Static variable in class ome.util.actions.PostgresSqlAction

Deprecated.

insertLogs(List<Object[]>) - Method in class ome.util.actions.PostgresSqlAction

insertLogs(List<Object[]>) - Method in interface ome.util.SqlAction

insertRows(PersistentCollection, Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister

insertSession(Map<String, Object>) - Method in class ome.util.actions.PostgresSqlAction

insertSession(Map<String, Object>) - Method in interface ome.util.SqlAction

institution - Variable in class ome.model.meta.Experimenter

INSTITUTION - Static variable in class ome.model.meta.Experimenter

instrument - Variable in class ome.model.acquisition.Detector

INSTRUMENT - Static variable in class ome.model.acquisition.Detector

instrument - Variable in class ome.model.acquisition.Dichroic

INSTRUMENT - Static variable in class ome.model.acquisition.Dichroic

instrument - Variable in class ome.model.acquisition.Filter

INSTRUMENT - Static variable in class ome.model.acquisition.Filter

instrument - Variable in class ome.model.acquisition.FilterSet

INSTRUMENT - Static variable in class ome.model.acquisition.FilterSet

Instrument - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Instrument() - Constructor for class ome.model.acquisition.Instrument

Instrument(Long) - Constructor for class ome.model.acquisition.Instrument

Instrument(Long, boolean) - Constructor for class ome.model.acquisition.Instrument

Main constructor.

instrument - Variable in class ome.model.acquisition.LightSource

INSTRUMENT - Static variable in class ome.model.acquisition.LightSource

instrument - Variable in class ome.model.acquisition.Objective

INSTRUMENT - Static variable in class ome.model.acquisition.Objective

instrument - Variable in class ome.model.acquisition.OTF

INSTRUMENT - Static variable in class ome.model.acquisition.OTF

instrument - Variable in class ome.model.core.Image

INSTRUMENT - Static variable in class ome.model.core.Image

Instrument.Details - Class in ome.model.acquisition

InstrumentAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

InstrumentAnnotationLink() - Constructor for class ome.model.annotations.InstrumentAnnotationLink

InstrumentAnnotationLink(Long) - Constructor for class ome.model.annotations.InstrumentAnnotationLink

InstrumentAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.InstrumentAnnotationLink

Main constructor.

InstrumentAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.InstrumentAnnotationLink

InstrumentAnnotationLink.Details - Class in ome.model.annotations

Int(long) - Static method in class ome.model.units.Conversion

Static helper for creating Conversion.Int instances.

Int(String) - Static method in class ome.model.units.Conversion

Static helper for creating Conversion.Int instances.

Int(long) - Constructor for class ome.model.units.Conversion.Int

Int(String) - Constructor for class ome.model.units.Conversion.Int

INT - Static variable in class ome.util.PixelData

Identifies the type used to store pixel values.

integration - Variable in class ome.model.acquisition.DetectorSettings

INTEGRATION - Static variable in class ome.model.acquisition.DetectorSettings

IntegrityCheckJob - Class in ome.model.jobs

IntegrityCheckJob() - Constructor for class ome.model.jobs.IntegrityCheckJob

IntegrityCheckJob(Long) - Constructor for class ome.model.jobs.IntegrityCheckJob

IntegrityCheckJob(Long, boolean) - Constructor for class ome.model.jobs.IntegrityCheckJob

Main constructor.

InternalException - Exception in ome.conditions

Catchall for unknown server exceptions.

InternalException(String) - Constructor for exception ome.conditions.InternalException

internalForm(Permissions) - Static method in class ome.util.Utils

Returns the internal representation of a Permissions object.

invalidate(String) - Method in class ome.util.Validation

invoke(MethodInvocation) - Method in class ome.util.SqlAction.LoggingSqlAction

IObject - Interface in ome.model

central model interface.

iris - Variable in class ome.model.acquisition.Objective

IRIS - Static variable in class ome.model.acquisition.Objective

isAcquisitionData() - Method in class ome.parameters.Parameters

isCache() - Method in class ome.parameters.Parameters

isDisallow(boolean[], int) - Static method in class ome.model.internal.Permissions

isDisallowAnnotate() - Method in class ome.model.internal.Permissions

isDisallowChgrp() - Method in class ome.model.internal.Permissions

isDisallowChown() - Method in class ome.model.internal.Permissions

isDisallowDelete() - Method in class ome.model.internal.Permissions

isDisallowEdit() - Method in class ome.model.internal.Permissions

isDisallowLink() - Method in class ome.model.internal.Permissions

isExperimenter() - Method in class ome.parameters.Parameters

isFileInRepo(String, long, Set<String>) - Method in class ome.util.SqlAction.Impl

isFileInRepo(String, long, Set<String>) - Method in interface ome.util.SqlAction

isFiltered(String) - Method in class ome.model.internal.Details

Was this collection filtered during creation? If so, it should not be saved to the DB.

isFloat - Variable in class ome.util.PixelData

If the data is floating point.

isFloat() - Method in class ome.util.PixelData

Returns whether or not the data is floating point.

isGranted(Permissions.Role, Permissions.Right) - Method in class ome.model.internal.Permissions

tests that a given Permissions.Role has the given Permissions.Right.

isGroup() - Method in class ome.parameters.Parameters

isLdapExperimenter(Long) - Method in class ome.util.SqlAction.Impl

isLdapExperimenter(Long) - Method in interface ome.util.SqlAction

Checks whether the specified experimenter ID has the ldap flag set.

isLeaves() - Method in class ome.parameters.Parameters

isLoaded() - Method in class ome.model.acquisition.Detector

isLoaded() - Method in class ome.model.acquisition.DetectorSettings

isLoaded() - Method in class ome.model.acquisition.Dichroic

isLoaded() - Method in class ome.model.acquisition.Filter

isLoaded() - Method in class ome.model.acquisition.FilterSet

isLoaded() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

isLoaded() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

isLoaded() - Method in class ome.model.acquisition.ImagingEnvironment

isLoaded() - Method in class ome.model.acquisition.Instrument

isLoaded() - Method in class ome.model.acquisition.LightPath

isLoaded() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

isLoaded() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

isLoaded() - Method in class ome.model.acquisition.LightSettings

isLoaded() - Method in class ome.model.acquisition.LightSource

isLoaded() - Method in class ome.model.acquisition.Microscope

isLoaded() - Method in class ome.model.acquisition.Objective

isLoaded() - Method in class ome.model.acquisition.ObjectiveSettings

isLoaded() - Method in class ome.model.acquisition.OTF

isLoaded() - Method in class ome.model.acquisition.StageLabel

isLoaded() - Method in class ome.model.acquisition.TransmittanceRange

isLoaded() - Method in class ome.model.annotations.Annotation

isLoaded() - Method in class ome.model.annotations.AnnotationAnnotationLink

isLoaded() - Method in class ome.model.annotations.ChannelAnnotationLink

isLoaded() - Method in class ome.model.annotations.DatasetAnnotationLink

isLoaded() - Method in class ome.model.annotations.DetectorAnnotationLink

isLoaded() - Method in class ome.model.annotations.DichroicAnnotationLink

isLoaded() - Method in class ome.model.annotations.ExperimenterAnnotationLink

isLoaded() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

isLoaded() - Method in class ome.model.annotations.FilesetAnnotationLink

isLoaded() - Method in class ome.model.annotations.FilterAnnotationLink

isLoaded() - Method in class ome.model.annotations.FolderAnnotationLink

isLoaded() - Method in class ome.model.annotations.ImageAnnotationLink

isLoaded() - Method in class ome.model.annotations.InstrumentAnnotationLink

isLoaded() - Method in class ome.model.annotations.LightPathAnnotationLink

isLoaded() - Method in class ome.model.annotations.LightSourceAnnotationLink

isLoaded() - Method in class ome.model.annotations.NamespaceAnnotationLink

isLoaded() - Method in class ome.model.annotations.NodeAnnotationLink

isLoaded() - Method in class ome.model.annotations.ObjectiveAnnotationLink

isLoaded() - Method in class ome.model.annotations.OriginalFileAnnotationLink

isLoaded() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

isLoaded() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

isLoaded() - Method in class ome.model.annotations.PlateAnnotationLink

isLoaded() - Method in class ome.model.annotations.ProjectAnnotationLink

isLoaded() - Method in class ome.model.annotations.ReagentAnnotationLink

isLoaded() - Method in class ome.model.annotations.RoiAnnotationLink

isLoaded() - Method in class ome.model.annotations.ScreenAnnotationLink

isLoaded() - Method in class ome.model.annotations.SessionAnnotationLink

isLoaded() - Method in class ome.model.annotations.ShapeAnnotationLink

isLoaded() - Method in class ome.model.annotations.WellAnnotationLink

isLoaded() - Method in class ome.model.containers.Dataset

isLoaded() - Method in class ome.model.containers.DatasetImageLink

isLoaded() - Method in class ome.model.containers.Folder

isLoaded() - Method in class ome.model.containers.FolderImageLink

isLoaded() - Method in class ome.model.containers.FolderRoiLink

isLoaded() - Method in class ome.model.containers.Project

isLoaded() - Method in class ome.model.containers.ProjectDatasetLink

isLoaded() - Method in class ome.model.core.Channel

isLoaded() - Method in class ome.model.core.Image

isLoaded() - Method in class ome.model.core.LogicalChannel

isLoaded() - Method in class ome.model.core.OriginalFile

isLoaded() - Method in class ome.model.core.Pixels

isLoaded() - Method in class ome.model.core.PixelsOriginalFileMap

isLoaded() - Method in class ome.model.core.PlaneInfo

isLoaded() - Method in class ome.model.display.ChannelBinding

isLoaded() - Method in class ome.model.display.CodomainMapContext

isLoaded() - Method in class ome.model.display.ProjectionDef

isLoaded() - Method in class ome.model.display.QuantumDef

isLoaded() - Method in class ome.model.display.RenderingDef

isLoaded() - Method in class ome.model.display.Thumbnail

isLoaded() - Method in class ome.model.enums.AcquisitionMode

isLoaded() - Method in class ome.model.enums.AdminPrivilege

isLoaded() - Method in class ome.model.enums.ArcType

isLoaded() - Method in class ome.model.enums.Binning

isLoaded() - Method in class ome.model.enums.ChecksumAlgorithm

isLoaded() - Method in class ome.model.enums.ContrastMethod

isLoaded() - Method in class ome.model.enums.Correction

isLoaded() - Method in class ome.model.enums.DetectorType

isLoaded() - Method in class ome.model.enums.DimensionOrder

isLoaded() - Method in class ome.model.enums.EventType

isLoaded() - Method in class ome.model.enums.ExperimentType

isLoaded() - Method in class ome.model.enums.Family

isLoaded() - Method in class ome.model.enums.FilamentType

isLoaded() - Method in class ome.model.enums.FilterType

isLoaded() - Method in class ome.model.enums.Format

isLoaded() - Method in class ome.model.enums.Illumination

isLoaded() - Method in class ome.model.enums.Immersion

isLoaded() - Method in class ome.model.enums.LaserMedium

isLoaded() - Method in class ome.model.enums.LaserType

isLoaded() - Method in class ome.model.enums.Medium

isLoaded() - Method in class ome.model.enums.MicrobeamManipulationType

isLoaded() - Method in class ome.model.enums.MicroscopeType

isLoaded() - Method in class ome.model.enums.PhotometricInterpretation

isLoaded() - Method in class ome.model.enums.PixelsType

isLoaded() - Method in class ome.model.enums.ProjectionAxis

isLoaded() - Method in class ome.model.enums.ProjectionType

isLoaded() - Method in class ome.model.enums.Pulse

isLoaded() - Method in class ome.model.enums.RenderingModel

isLoaded() - Method in class ome.model.experiment.Experiment

isLoaded() - Method in class ome.model.experiment.MicrobeamManipulation

isLoaded() - Method in class ome.model.fs.Fileset

isLoaded() - Method in class ome.model.fs.FilesetEntry

isLoaded() - Method in class ome.model.fs.FilesetJobLink

isLoaded() - Method in class ome.model.internal.Link

isLoaded() - Method in interface ome.model.IObject

transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.

isLoaded() - Method in class ome.model.jobs.Job

isLoaded() - Method in class ome.model.jobs.JobOriginalFileLink

isLoaded() - Method in class ome.model.jobs.JobStatus

isLoaded() - Method in class ome.model.meta.DBPatch

isLoaded() - Method in class ome.model.meta.Event

isLoaded() - Method in class ome.model.meta.EventLog

isLoaded() - Method in class ome.model.meta.Experimenter

isLoaded() - Method in class ome.model.meta.ExperimenterGroup

isLoaded() - Method in class ome.model.meta.ExternalInfo

isLoaded() - Method in class ome.model.meta.GroupExperimenterMap

isLoaded() - Method in class ome.model.meta.Namespace

isLoaded() - Method in class ome.model.meta.Node

isLoaded() - Method in class ome.model.meta.Session

isLoaded() - Method in class ome.model.meta.ShareMember

isLoaded() - Method in class ome.model.roi.AffineTransform

isLoaded() - Method in class ome.model.roi.Roi

isLoaded() - Method in class ome.model.roi.Shape

isLoaded() - Method in class ome.model.screen.Plate

isLoaded() - Method in class ome.model.screen.PlateAcquisition

isLoaded() - Method in class ome.model.screen.Reagent

isLoaded() - Method in class ome.model.screen.Screen

isLoaded() - Method in class ome.model.screen.ScreenPlateLink

isLoaded() - Method in class ome.model.screen.Well

isLoaded() - Method in class ome.model.screen.WellReagentLink

isLoaded() - Method in class ome.model.screen.WellSample

isLoaded() - Method in class ome.model.stats.StatsInfo

isLoaded() - Method in class ome.util.PermDetails

isMutable() - Method in class ome.model.units.GenericEnumType

isOrphan() - Method in class ome.parameters.Parameters

isPagination() - Method in class ome.parameters.Parameters

isSet(Permissions.Flag) - Method in class ome.model.internal.Permissions

tests that a given Permissions.Flag is set.

isSigned - Variable in class ome.util.PixelData

If the data is signed.

isSigned() - Method in class ome.util.PixelData

Returns whether or not the data is signed.

isUnique() - Method in class ome.parameters.Filter

check uniqueness for this query.

isUnique() - Method in class ome.parameters.Parameters

isValid() - Method in class ome.model.acquisition.Arc

isValid() - Method in class ome.model.acquisition.Detector

isValid() - Method in class ome.model.acquisition.DetectorSettings

isValid() - Method in class ome.model.acquisition.Dichroic

isValid() - Method in class ome.model.acquisition.Filament

isValid() - Method in class ome.model.acquisition.Filter

isValid() - Method in class ome.model.acquisition.FilterSet

isValid() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

isValid() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

isValid() - Method in class ome.model.acquisition.GenericExcitationSource

isValid() - Method in class ome.model.acquisition.ImagingEnvironment

isValid() - Method in class ome.model.acquisition.Instrument

isValid() - Method in class ome.model.acquisition.Laser

isValid() - Method in class ome.model.acquisition.LightEmittingDiode

isValid() - Method in class ome.model.acquisition.LightPath

isValid() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

isValid() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

isValid() - Method in class ome.model.acquisition.LightSettings

isValid() - Method in class ome.model.acquisition.LightSource

isValid() - Method in class ome.model.acquisition.Microscope

isValid() - Method in class ome.model.acquisition.Objective

isValid() - Method in class ome.model.acquisition.ObjectiveSettings

isValid() - Method in class ome.model.acquisition.OTF

isValid() - Method in class ome.model.acquisition.StageLabel

isValid() - Method in class ome.model.acquisition.TransmittanceRange

isValid() - Method in class ome.model.annotations.Annotation

isValid() - Method in class ome.model.annotations.AnnotationAnnotationLink

isValid() - Method in class ome.model.annotations.BasicAnnotation

isValid() - Method in class ome.model.annotations.BooleanAnnotation

isValid() - Method in class ome.model.annotations.ChannelAnnotationLink

isValid() - Method in class ome.model.annotations.CommentAnnotation

isValid() - Method in class ome.model.annotations.DatasetAnnotationLink

isValid() - Method in class ome.model.annotations.DetectorAnnotationLink

isValid() - Method in class ome.model.annotations.DichroicAnnotationLink

isValid() - Method in class ome.model.annotations.DoubleAnnotation

isValid() - Method in class ome.model.annotations.ExperimenterAnnotationLink

isValid() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

isValid() - Method in class ome.model.annotations.FileAnnotation

isValid() - Method in class ome.model.annotations.FilesetAnnotationLink

isValid() - Method in class ome.model.annotations.FilterAnnotationLink

isValid() - Method in class ome.model.annotations.FolderAnnotationLink

isValid() - Method in class ome.model.annotations.ImageAnnotationLink

isValid() - Method in class ome.model.annotations.InstrumentAnnotationLink

isValid() - Method in class ome.model.annotations.LightPathAnnotationLink

isValid() - Method in class ome.model.annotations.LightSourceAnnotationLink

isValid() - Method in class ome.model.annotations.ListAnnotation

isValid() - Method in class ome.model.annotations.LongAnnotation

isValid() - Method in class ome.model.annotations.MapAnnotation

isValid() - Method in class ome.model.annotations.NamespaceAnnotationLink

isValid() - Method in class ome.model.annotations.NodeAnnotationLink

isValid() - Method in class ome.model.annotations.NumericAnnotation

isValid() - Method in class ome.model.annotations.ObjectiveAnnotationLink

isValid() - Method in class ome.model.annotations.OriginalFileAnnotationLink

isValid() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

isValid() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

isValid() - Method in class ome.model.annotations.PlateAnnotationLink

isValid() - Method in class ome.model.annotations.ProjectAnnotationLink

isValid() - Method in class ome.model.annotations.ReagentAnnotationLink

isValid() - Method in class ome.model.annotations.RoiAnnotationLink

isValid() - Method in class ome.model.annotations.ScreenAnnotationLink

isValid() - Method in class ome.model.annotations.SessionAnnotationLink

isValid() - Method in class ome.model.annotations.ShapeAnnotationLink

isValid() - Method in class ome.model.annotations.TagAnnotation

isValid() - Method in class ome.model.annotations.TermAnnotation

isValid() - Method in class ome.model.annotations.TextAnnotation

isValid() - Method in class ome.model.annotations.TimestampAnnotation

isValid() - Method in class ome.model.annotations.TypeAnnotation

isValid() - Method in class ome.model.annotations.WellAnnotationLink

isValid() - Method in class ome.model.annotations.XmlAnnotation

isValid() - Method in class ome.model.containers.Dataset

isValid() - Method in class ome.model.containers.DatasetImageLink

isValid() - Method in class ome.model.containers.Folder

isValid() - Method in class ome.model.containers.FolderImageLink

isValid() - Method in class ome.model.containers.FolderRoiLink

isValid() - Method in class ome.model.containers.Project

isValid() - Method in class ome.model.containers.ProjectDatasetLink

isValid() - Method in class ome.model.core.Channel

isValid() - Method in class ome.model.core.Image

isValid() - Method in class ome.model.core.LogicalChannel

isValid() - Method in class ome.model.core.OriginalFile

isValid() - Method in class ome.model.core.Pixels

isValid() - Method in class ome.model.core.PixelsOriginalFileMap

isValid() - Method in class ome.model.core.PlaneInfo

isValid() - Method in class ome.model.display.ChannelBinding

isValid() - Method in class ome.model.display.CodomainMapContext

isValid() - Method in class ome.model.display.ContrastStretchingContext

isValid() - Method in class ome.model.display.PlaneSlicingContext

isValid() - Method in class ome.model.display.ProjectionDef

isValid() - Method in class ome.model.display.QuantumDef

isValid() - Method in class ome.model.display.RenderingDef

isValid() - Method in class ome.model.display.ReverseIntensityContext

isValid() - Method in class ome.model.display.Thumbnail

isValid() - Method in class ome.model.enums.AcquisitionMode

isValid() - Method in class ome.model.enums.AdminPrivilege

isValid() - Method in class ome.model.enums.ArcType

isValid() - Method in class ome.model.enums.Binning

isValid() - Method in class ome.model.enums.ChecksumAlgorithm

isValid() - Method in class ome.model.enums.ContrastMethod

isValid() - Method in class ome.model.enums.Correction

isValid() - Method in class ome.model.enums.DetectorType

isValid() - Method in class ome.model.enums.DimensionOrder

isValid() - Method in class ome.model.enums.EventType

isValid() - Method in class ome.model.enums.ExperimentType

isValid() - Method in class ome.model.enums.Family

isValid() - Method in class ome.model.enums.FilamentType

isValid() - Method in class ome.model.enums.FilterType

isValid() - Method in class ome.model.enums.Format

isValid() - Method in class ome.model.enums.Illumination

isValid() - Method in class ome.model.enums.Immersion

isValid() - Method in class ome.model.enums.LaserMedium

isValid() - Method in class ome.model.enums.LaserType

isValid() - Method in class ome.model.enums.Medium

isValid() - Method in class ome.model.enums.MicrobeamManipulationType

isValid() - Method in class ome.model.enums.MicroscopeType

isValid() - Method in class ome.model.enums.PhotometricInterpretation

isValid() - Method in class ome.model.enums.PixelsType

isValid() - Method in class ome.model.enums.ProjectionAxis

isValid() - Method in class ome.model.enums.ProjectionType

isValid() - Method in class ome.model.enums.Pulse

isValid() - Method in class ome.model.enums.RenderingModel

isValid() - Method in class ome.model.experiment.Experiment

isValid() - Method in class ome.model.experiment.MicrobeamManipulation

isValid() - Method in class ome.model.fs.Fileset

isValid() - Method in class ome.model.fs.FilesetEntry

isValid() - Method in class ome.model.fs.FilesetJobLink

isValid() - Method in class ome.model.internal.Link

isValid() - Method in interface ome.model.IObject

calls the class-specific validator for this instance and returns the value from Validation.isValid()

isValid() - Method in class ome.model.jobs.ImportJob

Deprecated.

isValid() - Method in class ome.model.jobs.IndexingJob

isValid() - Method in class ome.model.jobs.IntegrityCheckJob

isValid() - Method in class ome.model.jobs.Job

isValid() - Method in class ome.model.jobs.JobOriginalFileLink

isValid() - Method in class ome.model.jobs.JobStatus

isValid() - Method in class ome.model.jobs.MetadataImportJob

isValid() - Method in class ome.model.jobs.ParseJob

isValid() - Method in class ome.model.jobs.PixelDataJob

isValid() - Method in class ome.model.jobs.ScriptJob

isValid() - Method in class ome.model.jobs.ThumbnailGenerationJob

isValid() - Method in class ome.model.jobs.UploadJob

isValid() - Method in class ome.model.meta.DBPatch

isValid() - Method in class ome.model.meta.Event

isValid() - Method in class ome.model.meta.EventLog

isValid() - Method in class ome.model.meta.Experimenter

isValid() - Method in class ome.model.meta.ExperimenterGroup

isValid() - Method in class ome.model.meta.ExternalInfo

isValid() - Method in class ome.model.meta.GroupExperimenterMap

isValid() - Method in class ome.model.meta.Namespace

isValid() - Method in class ome.model.meta.Node

isValid() - Method in class ome.model.meta.Session

isValid() - Method in class ome.model.meta.Share

isValid() - Method in class ome.model.meta.ShareMember

isValid() - Method in class ome.model.roi.AffineTransform

isValid() - Method in class ome.model.roi.Ellipse

isValid() - Method in class ome.model.roi.Label

isValid() - Method in class ome.model.roi.Line

isValid() - Method in class ome.model.roi.Mask

isValid() - Method in class ome.model.roi.Path

Deprecated.

isValid() - Method in class ome.model.roi.Point

isValid() - Method in class ome.model.roi.Polygon

isValid() - Method in class ome.model.roi.Polyline

isValid() - Method in class ome.model.roi.Rectangle

isValid() - Method in class ome.model.roi.Roi

isValid() - Method in class ome.model.roi.Shape

isValid() - Method in class ome.model.screen.Plate

isValid() - Method in class ome.model.screen.PlateAcquisition

isValid() - Method in class ome.model.screen.Reagent

isValid() - Method in class ome.model.screen.Screen

isValid() - Method in class ome.model.screen.ScreenPlateLink

isValid() - Method in class ome.model.screen.Well

isValid() - Method in class ome.model.screen.WellReagentLink

isValid() - Method in class ome.model.screen.WellSample

isValid() - Method in class ome.model.stats.StatsInfo

isValid() - Method in class ome.util.PermDetails

isValid() - Method in class ome.util.Validation

itemCount - Variable in class ome.model.meta.Share

ITEMCOUNT - Static variable in class ome.model.meta.Share

iterateAnnotationLinks() - Method in class ome.model.acquisition.Detector

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.acquisition.Dichroic

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.acquisition.Filter

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.acquisition.Instrument

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.acquisition.LightPath

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.acquisition.LightSource

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.acquisition.Objective

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.annotations.Annotation

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.containers.Dataset

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.containers.Folder

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.containers.Project

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.core.Channel

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.core.Image

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.core.OriginalFile

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.core.PlaneInfo

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.fs.Fileset

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in interface ome.model.IAnnotated

iterateAnnotationLinks() - Method in class ome.model.meta.Experimenter

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.meta.Namespace

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.meta.Node

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.meta.Session

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.roi.Roi

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.roi.Shape

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.screen.Plate

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.screen.Reagent

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.screen.Screen

should be used rather than accessing the annotationLinks set directly.

iterateAnnotationLinks() - Method in class ome.model.screen.Well

should be used rather than accessing the annotationLinks set directly.

iterateChannels() - Method in class ome.model.core.LogicalChannel

should be used rather than accessing the channels set directly.

iterateChannels() - Method in class ome.model.core.Pixels

should be used rather than accessing the channels set directly.

iterateChildFolders() - Method in class ome.model.containers.Folder

should be used rather than accessing the childFolders set directly.

iterateDatasetLinks() - Method in class ome.model.containers.Project

should be used rather than accessing the datasetLinks set directly.

iterateDatasetLinks() - Method in class ome.model.core.Image

should be used rather than accessing the datasetLinks set directly.

iterateDetector() - Method in class ome.model.acquisition.Instrument

should be used rather than accessing the detector set directly.

iterateDichroic() - Method in class ome.model.acquisition.Instrument

should be used rather than accessing the dichroic set directly.

iterateEmissionFilterLink() - Method in class ome.model.acquisition.Filter

should be used rather than accessing the emissionFilterLink set directly.

iterateEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet

should be used rather than accessing the emissionFilterLink set directly.

iterateEmissionFilterLink() - Method in class ome.model.acquisition.LightPath

should be used rather than accessing the emissionFilterLink set directly.

iterateEvents() - Method in class ome.model.meta.Session

should be used rather than accessing the events set directly.

iterateExcitationFilterLink() - Method in class ome.model.acquisition.Filter

should be used rather than accessing the excitationFilterLink set directly.

iterateExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet

should be used rather than accessing the excitationFilterLink set directly.

iterateExcitationFilterLink() - Method in class ome.model.acquisition.LightPath

should be used rather than accessing the excitationFilterLink set directly.

iterateFilesetEntries() - Method in class ome.model.core.OriginalFile

should be used rather than accessing the filesetEntries set directly.

iterateFilter() - Method in class ome.model.acquisition.Instrument

should be used rather than accessing the filter set directly.

iterateFilterSet() - Method in class ome.model.acquisition.Instrument

should be used rather than accessing the filterSet set directly.

iterateFolderLinks() - Method in class ome.model.core.Image

should be used rather than accessing the folderLinks set directly.

iterateFolderLinks() - Method in class ome.model.roi.Roi

should be used rather than accessing the folderLinks set directly.

iterateGroupExperimenterMap() - Method in class ome.model.meta.Experimenter

should be used rather than accessing the groupExperimenterMap set directly.

iterateGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup

should be used rather than accessing the groupExperimenterMap set directly.

iterateImageLinks() - Method in class ome.model.containers.Dataset

should be used rather than accessing the imageLinks set directly.

iterateImageLinks() - Method in class ome.model.containers.Folder

should be used rather than accessing the imageLinks set directly.

iterateImages() - Method in class ome.model.fs.Fileset

should be used rather than accessing the images set directly.

iterateJobLinks() - Method in class ome.model.fs.Fileset

should be used rather than accessing the jobLinks set directly.

iterateLightSource() - Method in class ome.model.acquisition.Instrument

should be used rather than accessing the lightSource set directly.

iterateLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation

should be used rather than accessing the lightSourceSettings set directly.

iterateLogs() - Method in class ome.model.meta.Event

should be used rather than accessing the logs set directly.

iterateMicrobeamManipulation() - Method in class ome.model.experiment.Experiment

should be used rather than accessing the microbeamManipulation set directly.

iterateObjective() - Method in class ome.model.acquisition.Instrument

should be used rather than accessing the objective set directly.

iterateOriginalFileLinks() - Method in class ome.model.jobs.Job

should be used rather than accessing the originalFileLinks set directly.

iterateOtf() - Method in class ome.model.acquisition.Instrument

should be used rather than accessing the otf set directly.

iteratePixels() - Method in class ome.model.core.Image

should be used rather than accessing the pixels set directly.

iteratePixelsFileMaps() - Method in class ome.model.core.OriginalFile

should be used rather than accessing the pixelsFileMaps set directly.

iteratePixelsFileMaps() - Method in class ome.model.core.Pixels

should be used rather than accessing the pixelsFileMaps set directly.

iteratePlaneInfo() - Method in class ome.model.core.Pixels

should be used rather than accessing the planeInfo set directly.

iteratePlateAcquisitions() - Method in class ome.model.screen.Plate

should be used rather than accessing the plateAcquisitions set directly.

iteratePlateLinks() - Method in class ome.model.screen.Screen

should be used rather than accessing the plateLinks set directly.

iterateProjections() - Method in class ome.model.display.RenderingDef

should be used rather than accessing the projections set directly.

iterateProjectLinks() - Method in class ome.model.containers.Dataset

should be used rather than accessing the projectLinks set directly.

iterateReagentLinks() - Method in class ome.model.screen.Well

should be used rather than accessing the reagentLinks set directly.

iterateReagents() - Method in class ome.model.screen.Screen

should be used rather than accessing the reagents set directly.

iterateRoiLinks() - Method in class ome.model.containers.Folder

should be used rather than accessing the roiLinks set directly.

iterateRois() - Method in class ome.model.core.Image

should be used rather than accessing the rois set directly.

iterateScreenLinks() - Method in class ome.model.screen.Plate

should be used rather than accessing the screenLinks set directly.

iterateSessions() - Method in class ome.model.meta.Node

should be used rather than accessing the sessions set directly.

iterateSettings() - Method in class ome.model.core.Pixels

should be used rather than accessing the settings set directly.

iterateShapes() - Method in class ome.model.roi.Roi

should be used rather than accessing the shapes set directly.

iterateSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding

should be used rather than accessing the spatialDomainEnhancement set directly.

iterateThumbnails() - Method in class ome.model.core.Pixels

should be used rather than accessing the thumbnails set directly.

iterateUsedFiles() - Method in class ome.model.fs.Fileset

should be used rather than accessing the usedFiles set directly.

iterateWaveRendering() - Method in class ome.model.display.RenderingDef

should be used rather than accessing the waveRendering set directly.

iterateWellLinks() - Method in class ome.model.screen.Reagent

should be used rather than accessing the wellLinks set directly.

iterateWells() - Method in class ome.model.screen.Plate

should be used rather than accessing the wells set directly.

iterateWellSample() - Method in class ome.model.screen.PlateAcquisition

should be used rather than accessing the wellSample set directly.

iterateWellSamples() - Method in class ome.model.core.Image

should be used rather than accessing the wellSamples set directly.

iterateWellSamples() - Method in class ome.model.screen.Well

should be used rather than accessing the wellSamples set directly.

J

javaType - Variable in class ome.util.PixelData

The pixels type as it would be represented in Java.

javaType() - Method in class ome.util.PixelData

Returns the Java type that has the same byte width of the pixel data.

Job - Class in ome.model.jobs

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Job() - Constructor for class ome.model.jobs.Job

Job(Long) - Constructor for class ome.model.jobs.Job

Job(Long, boolean) - Constructor for class ome.model.jobs.Job

Main constructor.

Job(String, String, String, String, JobStatus, Timestamp, Timestamp) - Constructor for class ome.model.jobs.Job

Job.Details - Class in ome.model.jobs

jobLinks - Variable in class ome.model.fs.Fileset

JOBLINKS - Static variable in class ome.model.fs.Fileset

JOBLINKSCOUNTPEROWNER - Static variable in class ome.model.fs.Fileset

JobOriginalFileLink - Class in ome.model.jobs

These filter definitions are used by the security system to eliminate non-readable objects from queries.

JobOriginalFileLink() - Constructor for class ome.model.jobs.JobOriginalFileLink

JobOriginalFileLink(Long) - Constructor for class ome.model.jobs.JobOriginalFileLink

JobOriginalFileLink(Long, boolean) - Constructor for class ome.model.jobs.JobOriginalFileLink

Main constructor.

JobOriginalFileLink(IObject, IObject) - Constructor for class ome.model.jobs.JobOriginalFileLink

JobOriginalFileLink.Details - Class in ome.model.jobs

JobStatus - Class in ome.model.jobs

JobStatus() - Constructor for class ome.model.jobs.JobStatus

JobStatus(Long) - Constructor for class ome.model.jobs.JobStatus

JobStatus(Long, boolean) - Constructor for class ome.model.jobs.JobStatus

Main constructor.

JobStatus(String) - Constructor for class ome.model.jobs.JobStatus

JobStatus.Details - Class in ome.model.jobs

JVST_IDENTIFIER - Static variable in class ome.util.Utils

K

keySet() - Method in class ome.parameters.Parameters

the Set of all names which would would return a non-null value from Parameters.get(String)

keywords - Variable in class ome.model.meta.Namespace

KEYWORDS - Static variable in class ome.model.meta.Namespace

L

Label - Class in ome.model.roi

Label() - Constructor for class ome.model.roi.Label

Label(Long) - Constructor for class ome.model.roi.Label

Label(Long, boolean) - Constructor for class ome.model.roi.Label

Main constructor.

Laser - Class in ome.model.acquisition

Laser() - Constructor for class ome.model.acquisition.Laser

Laser(Long) - Constructor for class ome.model.acquisition.Laser

Laser(Long, boolean) - Constructor for class ome.model.acquisition.Laser

Main constructor.

Laser(LaserType, LaserMedium) - Constructor for class ome.model.acquisition.Laser

laserMedium - Variable in class ome.model.acquisition.Laser

LASERMEDIUM - Static variable in class ome.model.acquisition.Laser

LaserMedium - Class in ome.model.enums

LaserMedium() - Constructor for class ome.model.enums.LaserMedium

LaserMedium(Long) - Constructor for class ome.model.enums.LaserMedium

LaserMedium(Long, boolean) - Constructor for class ome.model.enums.LaserMedium

Main constructor.

LaserMedium(String) - Constructor for class ome.model.enums.LaserMedium

LaserMedium.Details - Class in ome.model.enums

LaserType - Class in ome.model.enums

LaserType() - Constructor for class ome.model.enums.LaserType

LaserType(Long) - Constructor for class ome.model.enums.LaserType

LaserType(Long, boolean) - Constructor for class ome.model.enums.LaserType

Main constructor.

LaserType(String) - Constructor for class ome.model.enums.LaserType

LaserType.Details - Class in ome.model.enums

lastName - Variable in class ome.model.meta.Experimenter

LASTNAME - Static variable in class ome.model.meta.Experimenter

ldap - Variable in class ome.model.meta.Experimenter

LDAP - Static variable in class ome.model.meta.Experimenter

ldap - Variable in class ome.model.meta.ExperimenterGroup

LDAP - Static variable in class ome.model.meta.ExperimenterGroup

leaves - Variable in class ome.parameters.Options

leaves() - Method in class ome.parameters.Parameters

Length - Class in ome.model.units

class storing both a Length and a unit for that Length (e.g.

Length() - Constructor for class ome.model.units.Length

Deprecated.

Length(double, String) - Constructor for class ome.model.units.Length

Length(double, UnitsLength) - Constructor for class ome.model.units.Length

Length(double, Unit<Length>) - Constructor for class ome.model.units.Length

Length(Length) - Constructor for class ome.model.units.Length

lensNA - Variable in class ome.model.acquisition.Objective

LENSNA - Static variable in class ome.model.acquisition.Objective

LightEmittingDiode - Class in ome.model.acquisition

LightEmittingDiode() - Constructor for class ome.model.acquisition.LightEmittingDiode

LightEmittingDiode(Long) - Constructor for class ome.model.acquisition.LightEmittingDiode

LightEmittingDiode(Long, boolean) - Constructor for class ome.model.acquisition.LightEmittingDiode

Main constructor.

LightPath - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

LightPath() - Constructor for class ome.model.acquisition.LightPath

LightPath(Long) - Constructor for class ome.model.acquisition.LightPath

LightPath(Long, boolean) - Constructor for class ome.model.acquisition.LightPath

Main constructor.

lightPath - Variable in class ome.model.core.LogicalChannel

LIGHTPATH - Static variable in class ome.model.core.LogicalChannel

LightPath.Details - Class in ome.model.acquisition

LightPathAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

LightPathAnnotationLink() - Constructor for class ome.model.annotations.LightPathAnnotationLink

LightPathAnnotationLink(Long) - Constructor for class ome.model.annotations.LightPathAnnotationLink

LightPathAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.LightPathAnnotationLink

Main constructor.

LightPathAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.LightPathAnnotationLink

LightPathAnnotationLink.Details - Class in ome.model.annotations

LightPathEmissionFilterLink - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

LightPathEmissionFilterLink() - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink

LightPathEmissionFilterLink(Long) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink

LightPathEmissionFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink

Main constructor.

LightPathEmissionFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink

LightPathEmissionFilterLink.Details - Class in ome.model.acquisition

LightPathExcitationFilterLink - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

LightPathExcitationFilterLink() - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink

LightPathExcitationFilterLink(Long) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink

LightPathExcitationFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink

Main constructor.

LightPathExcitationFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink

LightPathExcitationFilterLink.Details - Class in ome.model.acquisition

LightSettings - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

LightSettings() - Constructor for class ome.model.acquisition.LightSettings

LightSettings(Long) - Constructor for class ome.model.acquisition.LightSettings

LightSettings(Long, boolean) - Constructor for class ome.model.acquisition.LightSettings

Main constructor.

LightSettings(LightSource) - Constructor for class ome.model.acquisition.LightSettings

LightSettings.Details - Class in ome.model.acquisition

lightSource - Variable in class ome.model.acquisition.Instrument

LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument

lightSource - Variable in class ome.model.acquisition.LightSettings

LIGHTSOURCE - Static variable in class ome.model.acquisition.LightSettings

LightSource - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

LightSource() - Constructor for class ome.model.acquisition.LightSource

LightSource(Long) - Constructor for class ome.model.acquisition.LightSource

LightSource(Long, boolean) - Constructor for class ome.model.acquisition.LightSource

Main constructor.

LightSource(Instrument) - Constructor for class ome.model.acquisition.LightSource

LightSource.Details - Class in ome.model.acquisition

LightSourceAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

LightSourceAnnotationLink() - Constructor for class ome.model.annotations.LightSourceAnnotationLink

LightSourceAnnotationLink(Long) - Constructor for class ome.model.annotations.LightSourceAnnotationLink

LightSourceAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.LightSourceAnnotationLink

Main constructor.

LightSourceAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.LightSourceAnnotationLink

LightSourceAnnotationLink.Details - Class in ome.model.annotations

lightSourceSettings - Variable in class ome.model.core.LogicalChannel

LIGHTSOURCESETTINGS - Static variable in class ome.model.core.LogicalChannel

lightSourceSettings - Variable in class ome.model.experiment.MicrobeamManipulation

LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation

limit - Variable in class ome.parameters.Filter

Line - Class in ome.model.roi

Line() - Constructor for class ome.model.roi.Line

Line(Long) - Constructor for class ome.model.roi.Line

Line(Long, boolean) - Constructor for class ome.model.roi.Line

Main constructor.

link(FilterSet, Filter) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

link(FilterSet, Filter) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

link(LightPath, Filter) - Method in class ome.model.acquisition.LightPathEmissionFilterLink

link(LightPath, Filter) - Method in class ome.model.acquisition.LightPathExcitationFilterLink

link(Annotation, Annotation) - Method in class ome.model.annotations.AnnotationAnnotationLink

link(Channel, Annotation) - Method in class ome.model.annotations.ChannelAnnotationLink

link(Dataset, Annotation) - Method in class ome.model.annotations.DatasetAnnotationLink

link(Detector, Annotation) - Method in class ome.model.annotations.DetectorAnnotationLink

link(Dichroic, Annotation) - Method in class ome.model.annotations.DichroicAnnotationLink

link(Experimenter, Annotation) - Method in class ome.model.annotations.ExperimenterAnnotationLink

link(ExperimenterGroup, Annotation) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

link(Fileset, Annotation) - Method in class ome.model.annotations.FilesetAnnotationLink

link(Filter, Annotation) - Method in class ome.model.annotations.FilterAnnotationLink

link(Folder, Annotation) - Method in class ome.model.annotations.FolderAnnotationLink

link(Image, Annotation) - Method in class ome.model.annotations.ImageAnnotationLink

link(Instrument, Annotation) - Method in class ome.model.annotations.InstrumentAnnotationLink

link(LightPath, Annotation) - Method in class ome.model.annotations.LightPathAnnotationLink

link(LightSource, Annotation) - Method in class ome.model.annotations.LightSourceAnnotationLink

link(Namespace, Annotation) - Method in class ome.model.annotations.NamespaceAnnotationLink

link(Node, Annotation) - Method in class ome.model.annotations.NodeAnnotationLink

link(Objective, Annotation) - Method in class ome.model.annotations.ObjectiveAnnotationLink

link(OriginalFile, Annotation) - Method in class ome.model.annotations.OriginalFileAnnotationLink

link(PlaneInfo, Annotation) - Method in class ome.model.annotations.PlaneInfoAnnotationLink

link(PlateAcquisition, Annotation) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

link(Plate, Annotation) - Method in class ome.model.annotations.PlateAnnotationLink

link(Project, Annotation) - Method in class ome.model.annotations.ProjectAnnotationLink

link(Reagent, Annotation) - Method in class ome.model.annotations.ReagentAnnotationLink

link(Roi, Annotation) - Method in class ome.model.annotations.RoiAnnotationLink

link(Screen, Annotation) - Method in class ome.model.annotations.ScreenAnnotationLink

link(Session, Annotation) - Method in class ome.model.annotations.SessionAnnotationLink

link(Shape, Annotation) - Method in class ome.model.annotations.ShapeAnnotationLink

link(Well, Annotation) - Method in class ome.model.annotations.WellAnnotationLink

link(Dataset, Image) - Method in class ome.model.containers.DatasetImageLink

link(Folder, Image) - Method in class ome.model.containers.FolderImageLink

link(Folder, Roi) - Method in class ome.model.containers.FolderRoiLink

link(Project, Dataset) - Method in class ome.model.containers.ProjectDatasetLink

link(OriginalFile, Pixels) - Method in class ome.model.core.PixelsOriginalFileMap

link(Fileset, Job) - Method in class ome.model.fs.FilesetJobLink

Link - Class in ome.model.internal

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Link() - Constructor for class ome.model.internal.Link

Link(Long) - Constructor for class ome.model.internal.Link

Link(Long, boolean) - Constructor for class ome.model.internal.Link

Main constructor.

link(Job, OriginalFile) - Method in class ome.model.jobs.JobOriginalFileLink

link(ExperimenterGroup, Experimenter) - Method in class ome.model.meta.GroupExperimenterMap

link(Share, Experimenter) - Method in class ome.model.meta.ShareMember

link(Screen, Plate) - Method in class ome.model.screen.ScreenPlateLink

link(Well, Reagent) - Method in class ome.model.screen.WellReagentLink

Link.Details - Class in ome.model.internal

linkAnnotation(Annotation) - Method in class ome.model.acquisition.Detector

Adds a ome.model.annotations.DetectorAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.acquisition.Dichroic

Adds a ome.model.annotations.DichroicAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.acquisition.Filter

Adds a ome.model.annotations.FilterAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.acquisition.Instrument

Adds a ome.model.annotations.InstrumentAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.acquisition.LightPath

Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.acquisition.LightSource

Adds a ome.model.annotations.LightSourceAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.acquisition.Objective

Adds a ome.model.annotations.ObjectiveAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.annotations.Annotation

Adds a ome.model.annotations.AnnotationAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.containers.Dataset

Adds a ome.model.annotations.DatasetAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.containers.Folder

Adds a ome.model.annotations.FolderAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.containers.Project

Adds a ome.model.annotations.ProjectAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.core.Channel

Adds a ome.model.annotations.ChannelAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.core.Image

Adds a ome.model.annotations.ImageAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.core.OriginalFile

Adds a ome.model.annotations.OriginalFileAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.core.PlaneInfo

Adds a ome.model.annotations.PlaneInfoAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.fs.Fileset

Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in interface ome.model.IAnnotated

linkAnnotation(Annotation) - Method in class ome.model.meta.Experimenter

Adds a ome.model.annotations.ExperimenterAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.meta.ExperimenterGroup

Adds a ome.model.annotations.ExperimenterGroupAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.meta.Namespace

Adds a ome.model.annotations.NamespaceAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.meta.Node

Adds a ome.model.annotations.NodeAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.meta.Session

Adds a ome.model.annotations.SessionAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.roi.Roi

Adds a ome.model.annotations.RoiAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.roi.Shape

Adds a ome.model.annotations.ShapeAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.screen.Plate

Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.screen.PlateAcquisition

Adds a ome.model.annotations.PlateAcquisitionAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.screen.Reagent

Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.screen.Screen

Adds a ome.model.annotations.ScreenAnnotationLink to annotationLinks .

linkAnnotation(Annotation) - Method in class ome.model.screen.Well

Adds a ome.model.annotations.WellAnnotationLink to annotationLinks .

linkDataset(Dataset) - Method in class ome.model.containers.Project

Adds a ome.model.containers.ProjectDatasetLink to datasetLinks .

linkDataset(Dataset) - Method in class ome.model.core.Image

Adds a ome.model.containers.DatasetImageLink to datasetLinks .

linkedAnnotationIterator() - Method in class ome.model.acquisition.Detector

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.acquisition.Dichroic

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.acquisition.Filter

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.acquisition.Instrument

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.acquisition.LightPath

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.acquisition.LightSource

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.acquisition.Objective

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.annotations.Annotation

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.containers.Dataset

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.containers.Folder

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.containers.Project

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.core.Channel

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.core.Image

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.core.OriginalFile

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.core.PlaneInfo

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.fs.Fileset

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in interface ome.model.IAnnotated

linkedAnnotationIterator() - Method in class ome.model.meta.Experimenter

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.meta.ExperimenterGroup

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.meta.Namespace

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.meta.Node

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.meta.Session

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.roi.Roi

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.roi.Shape

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.screen.Plate

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.screen.PlateAcquisition

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.screen.Reagent

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.screen.Screen

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationIterator() - Method in class ome.model.screen.Well

provides an iterator over the parent values of the annotationLinks.

linkedAnnotationList() - Method in class ome.model.acquisition.Detector

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.acquisition.Dichroic

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.acquisition.Filter

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.acquisition.Instrument

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.acquisition.LightPath

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.acquisition.LightSource

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.acquisition.Objective

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.annotations.Annotation

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.containers.Dataset

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.containers.Folder

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.containers.Project

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.core.Channel

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.core.Image

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.core.OriginalFile

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.core.PlaneInfo

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.fs.Fileset

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in interface ome.model.IAnnotated

linkedAnnotationList() - Method in class ome.model.meta.Experimenter

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.meta.ExperimenterGroup

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.meta.Namespace

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.meta.Node

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.meta.Session

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.roi.Roi

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.roi.Shape

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.screen.Plate

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.screen.PlateAcquisition

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.screen.Reagent

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.screen.Screen

produces a List-copy of the underlying collection.

linkedAnnotationList() - Method in class ome.model.screen.Well

produces a List-copy of the underlying collection.

linkedDatasetIterator() - Method in class ome.model.containers.Project

provides an iterator over the parent values of the datasetLinks.

linkedDatasetIterator() - Method in class ome.model.core.Image

provides an iterator over the child values of the datasetLinks.

linkedDatasetList() - Method in class ome.model.containers.Project

produces a List-copy of the underlying collection.

linkedDatasetList() - Method in class ome.model.core.Image

produces a List-copy of the underlying collection.

linkedEmissionFilterIterator() - Method in class ome.model.acquisition.Filter

provides an iterator over the child values of the emissionFilterLink.

linkedEmissionFilterIterator() - Method in class ome.model.acquisition.FilterSet

provides an iterator over the parent values of the emissionFilterLink.

linkedEmissionFilterIterator() - Method in class ome.model.acquisition.LightPath

provides an iterator over the parent values of the emissionFilterLink.

linkedEmissionFilterList() - Method in class ome.model.acquisition.Filter

produces a List-copy of the underlying collection.

linkedEmissionFilterList() - Method in class ome.model.acquisition.FilterSet

produces a List-copy of the underlying collection.

linkedEmissionFilterList() - Method in class ome.model.acquisition.LightPath

produces a List-copy of the underlying collection.

linkedExcitationFilterIterator() - Method in class ome.model.acquisition.Filter

provides an iterator over the child values of the excitationFilterLink.

linkedExcitationFilterIterator() - Method in class ome.model.acquisition.FilterSet

provides an iterator over the parent values of the excitationFilterLink.

linkedExcitationFilterIterator() - Method in class ome.model.acquisition.LightPath

provides an iterator over the parent values of the excitationFilterLink.

linkedExcitationFilterList() - Method in class ome.model.acquisition.Filter

produces a List-copy of the underlying collection.

linkedExcitationFilterList() - Method in class ome.model.acquisition.FilterSet

produces a List-copy of the underlying collection.

linkedExcitationFilterList() - Method in class ome.model.acquisition.LightPath

produces a List-copy of the underlying collection.

linkedExperimenterGroupIterator() - Method in class ome.model.meta.Experimenter

provides an iterator over the child values of the groupExperimenterMap.

linkedExperimenterGroupList() - Method in class ome.model.meta.Experimenter

produces a List-copy of the underlying collection.

linkedExperimenterIterator() - Method in class ome.model.meta.ExperimenterGroup

provides an iterator over the parent values of the groupExperimenterMap.

linkedExperimenterList() - Method in class ome.model.meta.ExperimenterGroup

produces a List-copy of the underlying collection.

linkedFolderIterator() - Method in class ome.model.core.Image

provides an iterator over the child values of the folderLinks.

linkedFolderIterator() - Method in class ome.model.roi.Roi

provides an iterator over the child values of the folderLinks.

linkedFolderList() - Method in class ome.model.core.Image

produces a List-copy of the underlying collection.

linkedFolderList() - Method in class ome.model.roi.Roi

produces a List-copy of the underlying collection.

linkedImageIterator() - Method in class ome.model.containers.Dataset

provides an iterator over the parent values of the imageLinks.

linkedImageIterator() - Method in class ome.model.containers.Folder

provides an iterator over the parent values of the imageLinks.

linkedImageList() - Method in class ome.model.containers.Dataset

produces a List-copy of the underlying collection.

linkedImageList() - Method in class ome.model.containers.Folder

produces a List-copy of the underlying collection.

linkedJobIterator() - Method in class ome.model.fs.Fileset

provides an iterator over the parent values of the jobLinks.

linkedJobList() - Method in class ome.model.fs.Fileset

produces a List-copy of the underlying collection.

linkedOriginalFileIterator() - Method in class ome.model.core.Pixels

provides an iterator over the child values of the pixelsFileMaps.

linkedOriginalFileIterator() - Method in class ome.model.jobs.Job

provides an iterator over the parent values of the originalFileLinks.

linkedOriginalFileList() - Method in class ome.model.core.Pixels

produces a List-copy of the underlying collection.

linkedOriginalFileList() - Method in class ome.model.jobs.Job

produces a List-copy of the underlying collection.

linkedPixelsIterator() - Method in class ome.model.core.OriginalFile

provides an iterator over the parent values of the pixelsFileMaps.

linkedPixelsList() - Method in class ome.model.core.OriginalFile

produces a List-copy of the underlying collection.

linkedPlateIterator() - Method in class ome.model.screen.Screen

provides an iterator over the parent values of the plateLinks.

linkedPlateList() - Method in class ome.model.screen.Screen

produces a List-copy of the underlying collection.

linkedProjectIterator() - Method in class ome.model.containers.Dataset

provides an iterator over the child values of the projectLinks.

linkedProjectList() - Method in class ome.model.containers.Dataset

produces a List-copy of the underlying collection.

linkedReagentIterator() - Method in class ome.model.screen.Well

provides an iterator over the parent values of the reagentLinks.

linkedReagentList() - Method in class ome.model.screen.Well

produces a List-copy of the underlying collection.

linkedRoiIterator() - Method in class ome.model.containers.Folder

provides an iterator over the parent values of the roiLinks.

linkedRoiList() - Method in class ome.model.containers.Folder

produces a List-copy of the underlying collection.

linkedScreenIterator() - Method in class ome.model.screen.Plate

provides an iterator over the child values of the screenLinks.

linkedScreenList() - Method in class ome.model.screen.Plate

produces a List-copy of the underlying collection.

linkedWellIterator() - Method in class ome.model.screen.Reagent

provides an iterator over the child values of the wellLinks.

linkedWellList() - Method in class ome.model.screen.Reagent

produces a List-copy of the underlying collection.

linkEmissionFilter(FilterSet) - Method in class ome.model.acquisition.Filter

Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink .

linkEmissionFilter(Filter) - Method in class ome.model.acquisition.FilterSet

Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink .

linkEmissionFilter(Filter) - Method in class ome.model.acquisition.LightPath

Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink .

linkExcitationFilter(FilterSet) - Method in class ome.model.acquisition.Filter

Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink .

linkExcitationFilter(Filter) - Method in class ome.model.acquisition.FilterSet

Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink .

linkExcitationFilter(Filter) - Method in class ome.model.acquisition.LightPath

Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink .

linkExperimenter(Experimenter) - Method in class ome.model.meta.ExperimenterGroup

Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap .

linkExperimenterGroup(ExperimenterGroup) - Method in class ome.model.meta.Experimenter

Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap .

linkFolder(Folder) - Method in class ome.model.core.Image

Adds a ome.model.containers.FolderImageLink to folderLinks .

linkFolder(Folder) - Method in class ome.model.roi.Roi

Adds a ome.model.containers.FolderRoiLink to folderLinks .

linkImage(Image) - Method in class ome.model.containers.Dataset

Adds a ome.model.containers.DatasetImageLink to imageLinks .

linkImage(Image) - Method in class ome.model.containers.Folder

Adds a ome.model.containers.FolderImageLink to imageLinks .

linkJob(Job) - Method in class ome.model.fs.Fileset

Adds a ome.model.fs.FilesetJobLink to jobLinks .

linkOriginalFile(OriginalFile) - Method in class ome.model.core.Pixels

Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps .

linkOriginalFile(OriginalFile) - Method in class ome.model.jobs.Job

Adds a ome.model.jobs.JobOriginalFileLink to originalFileLinks .

linkPixels(Pixels) - Method in class ome.model.core.OriginalFile

Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps .

linkPlate(Plate) - Method in class ome.model.screen.Screen

Adds a ome.model.screen.ScreenPlateLink to plateLinks .

linkProject(Project) - Method in class ome.model.containers.Dataset

Adds a ome.model.containers.ProjectDatasetLink to projectLinks .

linkReagent(Reagent) - Method in class ome.model.screen.Well

Adds a ome.model.screen.WellReagentLink to reagentLinks .

LINKRESTRICTION - Static variable in class ome.model.internal.Permissions

linkRoi(Roi) - Method in class ome.model.containers.Folder

Adds a ome.model.containers.FolderRoiLink to roiLinks .

linkScreen(Screen) - Method in class ome.model.screen.Plate

Adds a ome.model.screen.ScreenPlateLink to screenLinks .

linkWell(Well) - Method in class ome.model.screen.Reagent

Adds a ome.model.screen.WellReagentLink to wellLinks .

ListAnnotation - Class in ome.model.annotations

ListAnnotation() - Constructor for class ome.model.annotations.ListAnnotation

ListAnnotation(Long) - Constructor for class ome.model.annotations.ListAnnotation

ListAnnotation(Long, boolean) - Constructor for class ome.model.annotations.ListAnnotation

Main constructor.

listSqlTypes() - Static method in enum ome.model.units.UNITS

lock() - Static method in class ome.util.DetailsFieldBridge

locked - Variable in class ome.model.roi.Shape

LOCKED - Static variable in class ome.model.roi.Shape

LockTimeout - Exception in ome.conditions

Server could not acquire necessary lock.

LockTimeout(String, long, int) - Constructor for exception ome.conditions.LockTimeout

log - Static variable in class ome.util.ModelMapper

log - Variable in class ome.util.SqlAction.Impl

log - Static variable in class ome.util.Validation

log - Static variable in class ome.util.Validator

LoggingSqlAction() - Constructor for class ome.util.SqlAction.LoggingSqlAction

logicalChannel - Variable in class ome.model.core.Channel

LOGICALCHANNEL - Static variable in class ome.model.core.Channel

LogicalChannel - Class in ome.model.core

These filter definitions are used by the security system to eliminate non-readable objects from queries.

LogicalChannel() - Constructor for class ome.model.core.LogicalChannel

LogicalChannel(Long) - Constructor for class ome.model.core.LogicalChannel

LogicalChannel(Long, boolean) - Constructor for class ome.model.core.LogicalChannel

Main constructor.

LogicalChannel.Details - Class in ome.model.core

logs - Variable in class ome.model.meta.Event

LOGS - Static variable in class ome.model.meta.Event

LONG - Static variable in class ome.util.PixelData

Identifies the type used to store pixel values.

LongAnnotation - Class in ome.model.annotations

LongAnnotation() - Constructor for class ome.model.annotations.LongAnnotation

LongAnnotation(Long) - Constructor for class ome.model.annotations.LongAnnotation

LongAnnotation(Long, boolean) - Constructor for class ome.model.annotations.LongAnnotation

Main constructor.

longValue - Variable in class ome.model.annotations.LongAnnotation

LONGVALUE - Static variable in class ome.model.annotations.LongAnnotation

lookupTable - Variable in class ome.model.core.Channel

LOOKUPTABLE - Static variable in class ome.model.core.Channel

lookupTable - Variable in class ome.model.display.ChannelBinding

LOOKUPTABLE - Static variable in class ome.model.display.ChannelBinding

lotNumber - Variable in class ome.model.acquisition.Detector

LOTNUMBER - Static variable in class ome.model.acquisition.Detector

lotNumber - Variable in class ome.model.acquisition.Dichroic

LOTNUMBER - Static variable in class ome.model.acquisition.Dichroic

lotNumber - Variable in class ome.model.acquisition.Filter

LOTNUMBER - Static variable in class ome.model.acquisition.Filter

lotNumber - Variable in class ome.model.acquisition.FilterSet

LOTNUMBER - Static variable in class ome.model.acquisition.FilterSet

lotNumber - Variable in class ome.model.acquisition.LightSource

LOTNUMBER - Static variable in class ome.model.acquisition.LightSource

lotNumber - Variable in class ome.model.acquisition.Microscope

LOTNUMBER - Static variable in class ome.model.acquisition.Microscope

lotNumber - Variable in class ome.model.acquisition.Objective

LOTNUMBER - Static variable in class ome.model.acquisition.Objective

lowerLimit - Variable in class ome.model.display.PlaneSlicingContext

LOWERLIMIT - Static variable in class ome.model.display.PlaneSlicingContext

lsid - Variable in class ome.model.meta.ExternalInfo

LSID - Static variable in class ome.model.meta.ExternalInfo

LSID - Class in ome.util

This class represents an LSID as used by the OME-XML data model.

LSID(Class, int...) - Constructor for class ome.util.LSID

Default constructor.

LSID(String) - Constructor for class ome.util.LSID

Constructor for non-standard LSIDs.

LSID(String, boolean) - Constructor for class ome.util.LSID

Constructor for standard LSIDs that should be parsed.

M

makeElectricPotentialUnitXML(String) - Static method in class ome.model.units.ElectricPotential

makeElectricPotentialXML(double, String) - Static method in class ome.model.units.ElectricPotential

makeFrequencyUnitXML(String) - Static method in class ome.model.units.Frequency

makeFrequencyXML(double, String) - Static method in class ome.model.units.Frequency

makeLengthUnitXML(String) - Static method in class ome.model.units.Length

makeLengthXML(double, String) - Static method in class ome.model.units.Length

makePowerUnitXML(String) - Static method in class ome.model.units.Power

makePowerXML(double, String) - Static method in class ome.model.units.Power

makePressureUnitXML(String) - Static method in class ome.model.units.Pressure

makePressureXML(double, String) - Static method in class ome.model.units.Pressure

makeTemperatureUnitXML(String) - Static method in class ome.model.units.Temperature

makeTemperatureXML(double, String) - Static method in class ome.model.units.Temperature

makeTimeUnitXML(String) - Static method in class ome.model.units.Time

makeTimeXML(double, String) - Static method in class ome.model.units.Time

manufacturer - Variable in class ome.model.acquisition.Detector

MANUFACTURER - Static variable in class ome.model.acquisition.Detector

manufacturer - Variable in class ome.model.acquisition.Dichroic

MANUFACTURER - Static variable in class ome.model.acquisition.Dichroic

manufacturer - Variable in class ome.model.acquisition.Filter

MANUFACTURER - Static variable in class ome.model.acquisition.Filter

manufacturer - Variable in class ome.model.acquisition.FilterSet

MANUFACTURER - Static variable in class ome.model.acquisition.FilterSet

manufacturer - Variable in class ome.model.acquisition.LightSource

MANUFACTURER - Static variable in class ome.model.acquisition.LightSource

manufacturer - Variable in class ome.model.acquisition.Microscope

MANUFACTURER - Static variable in class ome.model.acquisition.Microscope

manufacturer - Variable in class ome.model.acquisition.Objective

MANUFACTURER - Static variable in class ome.model.acquisition.Objective

map - Variable in class ome.model.acquisition.GenericExcitationSource

MAP - Static variable in class ome.model.acquisition.GenericExcitationSource

map - Variable in class ome.model.acquisition.ImagingEnvironment

MAP - Static variable in class ome.model.acquisition.ImagingEnvironment

map(Filterable) - Method in class ome.util.ModelMapper

map(Collection) - Method in class ome.util.ModelMapper

map(Map) - Method in class ome.util.ModelMapper

MapAnnotation - Class in ome.model.annotations

MapAnnotation() - Constructor for class ome.model.annotations.MapAnnotation

MapAnnotation(Long) - Constructor for class ome.model.annotations.MapAnnotation

MapAnnotation(Long, boolean) - Constructor for class ome.model.annotations.MapAnnotation

Main constructor.

MapPut - Class in ome.util

Simple bean which calls "map.put(key, object)" on InitializingBean.afterPropertiesSet().

MapPut() - Constructor for class ome.util.MapPut

mapRow(ResultSet, int) - Method in class ome.util.SqlAction.DeleteLog

mapRow(ResultSet, int) - Method in class ome.util.SqlAction.IdRowMapper

mapRow(ResultSet, int) - Method in class ome.util.SqlAction.StringRowMapper

mapValue - Variable in class ome.model.annotations.MapAnnotation

MAPVALUE - Static variable in class ome.model.annotations.MapAnnotation

markerEnd - Variable in class ome.model.roi.Line

MARKEREND - Static variable in class ome.model.roi.Line

markerEnd - Variable in class ome.model.roi.Polyline

MARKEREND - Static variable in class ome.model.roi.Polyline

markerStart - Variable in class ome.model.roi.Line

MARKERSTART - Static variable in class ome.model.roi.Line

markerStart - Variable in class ome.model.roi.Polyline

MARKERSTART - Static variable in class ome.model.roi.Polyline

Mask - Class in ome.model.roi

Mask() - Constructor for class ome.model.roi.Mask

Mask(Long) - Constructor for class ome.model.roi.Mask

Mask(Long, boolean) - Constructor for class ome.model.roi.Mask

Main constructor.

MAX_IN_SIZE - Static variable in class ome.util.SqlAction.Impl

maximum - Variable in class ome.util.PixelData

The maximum pixel value for the pixels type of the pixel data.

maximumFieldCount - Variable in class ome.model.screen.PlateAcquisition

MAXIMUMFIELDCOUNT - Static variable in class ome.model.screen.PlateAcquisition

medium - Variable in class ome.model.acquisition.ObjectiveSettings

MEDIUM - Static variable in class ome.model.acquisition.ObjectiveSettings

Medium - Class in ome.model.enums

Medium() - Constructor for class ome.model.enums.Medium

Medium(Long) - Constructor for class ome.model.enums.Medium

Medium(Long, boolean) - Constructor for class ome.model.enums.Medium

Main constructor.

Medium(String) - Constructor for class ome.model.enums.Medium

Medium.Details - Class in ome.model.enums

message - Variable in class ome.model.jobs.Job

MESSAGE - Static variable in class ome.model.jobs.Job

message - Variable in class ome.model.meta.DBPatch

MESSAGE - Static variable in class ome.model.meta.DBPatch

message - Variable in class ome.model.meta.Session

MESSAGE - Static variable in class ome.model.meta.Session

MetadataImportJob - Class in ome.model.jobs

MetadataImportJob() - Constructor for class ome.model.jobs.MetadataImportJob

MetadataImportJob(Long) - Constructor for class ome.model.jobs.MetadataImportJob

MetadataImportJob(Long, boolean) - Constructor for class ome.model.jobs.MetadataImportJob

Main constructor.

methodology - Variable in class ome.model.core.Pixels

METHODOLOGY - Static variable in class ome.model.core.Pixels

microbeamManipulation - Variable in class ome.model.acquisition.LightSettings

MICROBEAMMANIPULATION - Static variable in class ome.model.acquisition.LightSettings

microbeamManipulation - Variable in class ome.model.experiment.Experiment

MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment

MicrobeamManipulation - Class in ome.model.experiment

These filter definitions are used by the security system to eliminate non-readable objects from queries.

MicrobeamManipulation() - Constructor for class ome.model.experiment.MicrobeamManipulation

MicrobeamManipulation(Long) - Constructor for class ome.model.experiment.MicrobeamManipulation

MicrobeamManipulation(Long, boolean) - Constructor for class ome.model.experiment.MicrobeamManipulation

Main constructor.

MicrobeamManipulation(MicrobeamManipulationType, Experiment) - Constructor for class ome.model.experiment.MicrobeamManipulation

MicrobeamManipulation.Details - Class in ome.model.experiment

MicrobeamManipulationType - Class in ome.model.enums

MicrobeamManipulationType() - Constructor for class ome.model.enums.MicrobeamManipulationType

MicrobeamManipulationType(Long) - Constructor for class ome.model.enums.MicrobeamManipulationType

MicrobeamManipulationType(Long, boolean) - Constructor for class ome.model.enums.MicrobeamManipulationType

Main constructor.

MicrobeamManipulationType(String) - Constructor for class ome.model.enums.MicrobeamManipulationType

MicrobeamManipulationType.Details - Class in ome.model.enums

microscope - Variable in class ome.model.acquisition.Instrument

MICROSCOPE - Static variable in class ome.model.acquisition.Instrument

Microscope - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Microscope() - Constructor for class ome.model.acquisition.Microscope

Microscope(Long) - Constructor for class ome.model.acquisition.Microscope

Microscope(Long, boolean) - Constructor for class ome.model.acquisition.Microscope

Main constructor.

Microscope(MicroscopeType) - Constructor for class ome.model.acquisition.Microscope

Microscope.Details - Class in ome.model.acquisition

MicroscopeType - Class in ome.model.enums

MicroscopeType() - Constructor for class ome.model.enums.MicroscopeType

MicroscopeType(Long) - Constructor for class ome.model.enums.MicroscopeType

MicroscopeType(Long, boolean) - Constructor for class ome.model.enums.MicroscopeType

Main constructor.

MicroscopeType(String) - Constructor for class ome.model.enums.MicroscopeType

MicroscopeType.Details - Class in ome.model.enums

middleName - Variable in class ome.model.meta.Experimenter

MIDDLENAME - Static variable in class ome.model.meta.Experimenter

mimetype - Variable in class ome.model.core.OriginalFile

MIMETYPE - Static variable in class ome.model.core.OriginalFile

mimeType - Variable in class ome.model.display.Thumbnail

MIMETYPE - Static variable in class ome.model.display.Thumbnail

minimum - Variable in class ome.util.PixelData

The minimum pixel value for the pixels type of the pixel data.

MissingPyramidException - Exception in ome.conditions

MissingPyramidException(String, long, long) - Constructor for exception ome.conditions.MissingPyramidException

mode - Variable in class ome.model.core.LogicalChannel

MODE - Static variable in class ome.model.core.LogicalChannel

model - Variable in class ome.model.acquisition.Detector

MODEL - Static variable in class ome.model.acquisition.Detector

model - Variable in class ome.model.acquisition.Dichroic

MODEL - Static variable in class ome.model.acquisition.Dichroic

model - Variable in class ome.model.acquisition.Filter

MODEL - Static variable in class ome.model.acquisition.Filter

model - Variable in class ome.model.acquisition.FilterSet

MODEL - Static variable in class ome.model.acquisition.FilterSet

model - Variable in class ome.model.acquisition.LightSource

MODEL - Static variable in class ome.model.acquisition.LightSource

model - Variable in class ome.model.acquisition.Microscope

MODEL - Static variable in class ome.model.acquisition.Microscope

model - Variable in class ome.model.acquisition.Objective

MODEL - Static variable in class ome.model.acquisition.Objective

model - Variable in class ome.model.display.RenderingDef

MODEL - Static variable in class ome.model.display.RenderingDef

model2target - Variable in class ome.util.ModelMapper

ModelBased - Interface in ome.model

used for reverse mapping.

ModelMapper - Class in ome.util

ModelMapper() - Constructor for class ome.util.ModelMapper

mtime - Variable in class ome.model.core.OriginalFile

MTIME - Static variable in class ome.model.core.OriginalFile

Mul(Conversion...) - Static method in class ome.model.units.Conversion

Static helper for creating Conversion.Mul instances.

Mul(Conversion[]) - Constructor for class ome.model.units.Conversion.Mul

multivalued - Variable in class ome.model.meta.Namespace

MULTIVALUED - Static variable in class ome.model.meta.Namespace

N

name - Variable in class ome.model.acquisition.StageLabel

NAME - Static variable in class ome.model.acquisition.StageLabel

name - Variable in class ome.model.annotations.Annotation

NAME - Static variable in class ome.model.annotations.Annotation

name - Variable in class ome.model.containers.Dataset

NAME - Static variable in class ome.model.containers.Dataset

name - Variable in class ome.model.containers.Folder

NAME - Static variable in class ome.model.containers.Folder

name - Variable in class ome.model.containers.Project

NAME - Static variable in class ome.model.containers.Project

name - Variable in class ome.model.core.Image

NAME - Static variable in class ome.model.core.Image

name - Variable in class ome.model.core.LogicalChannel

NAME - Static variable in class ome.model.core.LogicalChannel

name - Variable in class ome.model.core.OriginalFile

NAME - Static variable in class ome.model.core.OriginalFile

name - Variable in class ome.model.display.RenderingDef

NAME - Static variable in class ome.model.display.RenderingDef

name - Variable in class ome.model.meta.ExperimenterGroup

NAME - Static variable in class ome.model.meta.ExperimenterGroup

name - Variable in class ome.model.meta.Namespace

NAME - Static variable in class ome.model.meta.Namespace

name - Variable in class ome.model.roi.Roi

NAME - Static variable in class ome.model.roi.Roi

name - Variable in class ome.model.screen.Plate

NAME - Static variable in class ome.model.screen.Plate

name - Variable in class ome.model.screen.PlateAcquisition

NAME - Static variable in class ome.model.screen.PlateAcquisition

name - Variable in class ome.model.screen.Reagent

NAME - Static variable in class ome.model.screen.Reagent

name - Variable in class ome.model.screen.Screen

NAME - Static variable in class ome.model.screen.Screen

name - Variable in class ome.parameters.QueryParameter

name - Variable in class ome.util.SqlAction.DeleteLog

NamedValue - Class in ome.model.internal

class to store a single value in an ordered list.

NamedValue() - Constructor for class ome.model.internal.NamedValue

Deprecated.

NamedValue(String, String) - Constructor for class ome.model.internal.NamedValue

Namespace - Class in ome.model.meta

Namespace() - Constructor for class ome.model.meta.Namespace

Namespace(Long) - Constructor for class ome.model.meta.Namespace

Namespace(Long, boolean) - Constructor for class ome.model.meta.Namespace

Main constructor.

Namespace(String) - Constructor for class ome.model.meta.Namespace

Namespace.Details - Class in ome.model.meta

NamespaceAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

NamespaceAnnotationLink() - Constructor for class ome.model.annotations.NamespaceAnnotationLink

NamespaceAnnotationLink(Long) - Constructor for class ome.model.annotations.NamespaceAnnotationLink

NamespaceAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.NamespaceAnnotationLink

Main constructor.

NamespaceAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.NamespaceAnnotationLink

NamespaceAnnotationLink.Details - Class in ome.model.annotations

ndFilter - Variable in class ome.model.core.LogicalChannel

NDFILTER - Static variable in class ome.model.core.LogicalChannel

newInstance() - Method in class ome.model.acquisition.Arc

newInstance() - Method in class ome.model.acquisition.Detector.Details

newInstance() - Method in class ome.model.acquisition.Detector

newInstance() - Method in class ome.model.acquisition.DetectorSettings.Details

newInstance() - Method in class ome.model.acquisition.DetectorSettings

newInstance() - Method in class ome.model.acquisition.Dichroic.Details

newInstance() - Method in class ome.model.acquisition.Dichroic

newInstance() - Method in class ome.model.acquisition.Filament

newInstance() - Method in class ome.model.acquisition.Filter.Details

newInstance() - Method in class ome.model.acquisition.Filter

newInstance() - Method in class ome.model.acquisition.FilterSet.Details

newInstance() - Method in class ome.model.acquisition.FilterSet

newInstance() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details

newInstance() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

newInstance() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details

newInstance() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

newInstance() - Method in class ome.model.acquisition.GenericExcitationSource

newInstance() - Method in class ome.model.acquisition.ImagingEnvironment.Details

newInstance() - Method in class ome.model.acquisition.ImagingEnvironment

newInstance() - Method in class ome.model.acquisition.Instrument.Details

newInstance() - Method in class ome.model.acquisition.Instrument

newInstance() - Method in class ome.model.acquisition.Laser

newInstance() - Method in class ome.model.acquisition.LightEmittingDiode

newInstance() - Method in class ome.model.acquisition.LightPath.Details

newInstance() - Method in class ome.model.acquisition.LightPath

newInstance() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details

newInstance() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

newInstance() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details

newInstance() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

newInstance() - Method in class ome.model.acquisition.LightSettings.Details

newInstance() - Method in class ome.model.acquisition.LightSettings

newInstance() - Method in class ome.model.acquisition.LightSource.Details

newInstance() - Method in class ome.model.acquisition.Microscope.Details

newInstance() - Method in class ome.model.acquisition.Microscope

newInstance() - Method in class ome.model.acquisition.Objective.Details

newInstance() - Method in class ome.model.acquisition.Objective

newInstance() - Method in class ome.model.acquisition.ObjectiveSettings.Details

newInstance() - Method in class ome.model.acquisition.ObjectiveSettings

newInstance() - Method in class ome.model.acquisition.OTF.Details

newInstance() - Method in class ome.model.acquisition.OTF

newInstance() - Method in class ome.model.acquisition.StageLabel.Details

newInstance() - Method in class ome.model.acquisition.StageLabel

newInstance() - Method in class ome.model.acquisition.TransmittanceRange.Details

newInstance() - Method in class ome.model.acquisition.TransmittanceRange

newInstance() - Method in class ome.model.annotations.Annotation.Details

newInstance() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.AnnotationAnnotationLink

newInstance() - Method in class ome.model.annotations.BooleanAnnotation

newInstance() - Method in class ome.model.annotations.ChannelAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.ChannelAnnotationLink

newInstance() - Method in class ome.model.annotations.CommentAnnotation

newInstance() - Method in class ome.model.annotations.DatasetAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.DatasetAnnotationLink

newInstance() - Method in class ome.model.annotations.DetectorAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.DetectorAnnotationLink

newInstance() - Method in class ome.model.annotations.DichroicAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.DichroicAnnotationLink

newInstance() - Method in class ome.model.annotations.DoubleAnnotation

newInstance() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.ExperimenterAnnotationLink

newInstance() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

newInstance() - Method in class ome.model.annotations.FileAnnotation

newInstance() - Method in class ome.model.annotations.FilesetAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.FilesetAnnotationLink

newInstance() - Method in class ome.model.annotations.FilterAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.FilterAnnotationLink

newInstance() - Method in class ome.model.annotations.FolderAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.FolderAnnotationLink

newInstance() - Method in class ome.model.annotations.ImageAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.ImageAnnotationLink

newInstance() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.InstrumentAnnotationLink

newInstance() - Method in class ome.model.annotations.LightPathAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.LightPathAnnotationLink

newInstance() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.LightSourceAnnotationLink

newInstance() - Method in class ome.model.annotations.ListAnnotation

newInstance() - Method in class ome.model.annotations.LongAnnotation

newInstance() - Method in class ome.model.annotations.MapAnnotation

newInstance() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.NamespaceAnnotationLink

newInstance() - Method in class ome.model.annotations.NodeAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.NodeAnnotationLink

newInstance() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.ObjectiveAnnotationLink

newInstance() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.OriginalFileAnnotationLink

newInstance() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

newInstance() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

newInstance() - Method in class ome.model.annotations.PlateAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.PlateAnnotationLink

newInstance() - Method in class ome.model.annotations.ProjectAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.ProjectAnnotationLink

newInstance() - Method in class ome.model.annotations.ReagentAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.ReagentAnnotationLink

newInstance() - Method in class ome.model.annotations.RoiAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.RoiAnnotationLink

newInstance() - Method in class ome.model.annotations.ScreenAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.ScreenAnnotationLink

newInstance() - Method in class ome.model.annotations.SessionAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.SessionAnnotationLink

newInstance() - Method in class ome.model.annotations.ShapeAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.ShapeAnnotationLink

newInstance() - Method in class ome.model.annotations.TagAnnotation

newInstance() - Method in class ome.model.annotations.TermAnnotation

newInstance() - Method in class ome.model.annotations.TimestampAnnotation

newInstance() - Method in class ome.model.annotations.WellAnnotationLink.Details

newInstance() - Method in class ome.model.annotations.WellAnnotationLink

newInstance() - Method in class ome.model.annotations.XmlAnnotation

newInstance() - Method in class ome.model.containers.Dataset.Details

newInstance() - Method in class ome.model.containers.Dataset

newInstance() - Method in class ome.model.containers.DatasetImageLink.Details

newInstance() - Method in class ome.model.containers.DatasetImageLink

newInstance() - Method in class ome.model.containers.Folder.Details

newInstance() - Method in class ome.model.containers.Folder

newInstance() - Method in class ome.model.containers.FolderImageLink.Details

newInstance() - Method in class ome.model.containers.FolderImageLink

newInstance() - Method in class ome.model.containers.FolderRoiLink.Details

newInstance() - Method in class ome.model.containers.FolderRoiLink

newInstance() - Method in class ome.model.containers.Project.Details

newInstance() - Method in class ome.model.containers.Project

newInstance() - Method in class ome.model.containers.ProjectDatasetLink.Details

newInstance() - Method in class ome.model.containers.ProjectDatasetLink

newInstance() - Method in class ome.model.core.Channel.Details

newInstance() - Method in class ome.model.core.Channel

newInstance() - Method in class ome.model.core.Image.Details

newInstance() - Method in class ome.model.core.Image

newInstance() - Method in class ome.model.core.LogicalChannel.Details

newInstance() - Method in class ome.model.core.LogicalChannel

newInstance() - Method in class ome.model.core.OriginalFile.Details

newInstance() - Method in class ome.model.core.OriginalFile

newInstance() - Method in class ome.model.core.Pixels.Details

newInstance() - Method in class ome.model.core.Pixels

newInstance() - Method in class ome.model.core.PixelsOriginalFileMap.Details

newInstance() - Method in class ome.model.core.PixelsOriginalFileMap

newInstance() - Method in class ome.model.core.PlaneInfo.Details

newInstance() - Method in class ome.model.core.PlaneInfo

newInstance() - Method in class ome.model.display.ChannelBinding.Details

newInstance() - Method in class ome.model.display.ChannelBinding

newInstance() - Method in class ome.model.display.CodomainMapContext.Details

newInstance() - Method in class ome.model.display.ContrastStretchingContext

newInstance() - Method in class ome.model.display.PlaneSlicingContext

newInstance() - Method in class ome.model.display.ProjectionDef.Details

newInstance() - Method in class ome.model.display.ProjectionDef

newInstance() - Method in class ome.model.display.QuantumDef.Details

newInstance() - Method in class ome.model.display.QuantumDef

newInstance() - Method in class ome.model.display.RenderingDef.Details

newInstance() - Method in class ome.model.display.RenderingDef

newInstance() - Method in class ome.model.display.ReverseIntensityContext

newInstance() - Method in class ome.model.display.Thumbnail.Details

newInstance() - Method in class ome.model.display.Thumbnail

newInstance() - Method in class ome.model.enums.AcquisitionMode.Details

newInstance() - Method in class ome.model.enums.AcquisitionMode

newInstance() - Method in class ome.model.enums.AdminPrivilege.Details

newInstance() - Method in class ome.model.enums.AdminPrivilege

newInstance() - Method in class ome.model.enums.ArcType.Details

newInstance() - Method in class ome.model.enums.ArcType

newInstance() - Method in class ome.model.enums.Binning.Details

newInstance() - Method in class ome.model.enums.Binning

newInstance() - Method in class ome.model.enums.ChecksumAlgorithm.Details

newInstance() - Method in class ome.model.enums.ChecksumAlgorithm

newInstance() - Method in class ome.model.enums.ContrastMethod.Details

newInstance() - Method in class ome.model.enums.ContrastMethod

newInstance() - Method in class ome.model.enums.Correction.Details

newInstance() - Method in class ome.model.enums.Correction

newInstance() - Method in class ome.model.enums.DetectorType.Details

newInstance() - Method in class ome.model.enums.DetectorType

newInstance() - Method in class ome.model.enums.DimensionOrder.Details

newInstance() - Method in class ome.model.enums.DimensionOrder

newInstance() - Method in class ome.model.enums.EventType.Details

newInstance() - Method in class ome.model.enums.EventType

newInstance() - Method in class ome.model.enums.ExperimentType.Details

newInstance() - Method in class ome.model.enums.ExperimentType

newInstance() - Method in class ome.model.enums.Family.Details

newInstance() - Method in class ome.model.enums.Family

newInstance() - Method in class ome.model.enums.FilamentType.Details

newInstance() - Method in class ome.model.enums.FilamentType

newInstance() - Method in class ome.model.enums.FilterType.Details

newInstance() - Method in class ome.model.enums.FilterType

newInstance() - Method in class ome.model.enums.Format.Details

newInstance() - Method in class ome.model.enums.Format

newInstance() - Method in class ome.model.enums.Illumination.Details

newInstance() - Method in class ome.model.enums.Illumination

newInstance() - Method in class ome.model.enums.Immersion.Details

newInstance() - Method in class ome.model.enums.Immersion

newInstance() - Method in class ome.model.enums.LaserMedium.Details

newInstance() - Method in class ome.model.enums.LaserMedium

newInstance() - Method in class ome.model.enums.LaserType.Details

newInstance() - Method in class ome.model.enums.LaserType

newInstance() - Method in class ome.model.enums.Medium.Details

newInstance() - Method in class ome.model.enums.Medium

newInstance() - Method in class ome.model.enums.MicrobeamManipulationType.Details

newInstance() - Method in class ome.model.enums.MicrobeamManipulationType

newInstance() - Method in class ome.model.enums.MicroscopeType.Details

newInstance() - Method in class ome.model.enums.MicroscopeType

newInstance() - Method in class ome.model.enums.PhotometricInterpretation.Details

newInstance() - Method in class ome.model.enums.PhotometricInterpretation

newInstance() - Method in class ome.model.enums.PixelsType.Details

newInstance() - Method in class ome.model.enums.PixelsType

newInstance() - Method in class ome.model.enums.ProjectionAxis.Details

newInstance() - Method in class ome.model.enums.ProjectionAxis

newInstance() - Method in class ome.model.enums.ProjectionType.Details

newInstance() - Method in class ome.model.enums.ProjectionType

newInstance() - Method in class ome.model.enums.Pulse.Details

newInstance() - Method in class ome.model.enums.Pulse

newInstance() - Method in class ome.model.enums.RenderingModel.Details

newInstance() - Method in class ome.model.enums.RenderingModel

newInstance() - Method in class ome.model.experiment.Experiment.Details

newInstance() - Method in class ome.model.experiment.Experiment

newInstance() - Method in class ome.model.experiment.MicrobeamManipulation.Details

newInstance() - Method in class ome.model.experiment.MicrobeamManipulation

newInstance() - Method in class ome.model.fs.Fileset.Details

newInstance() - Method in class ome.model.fs.Fileset

newInstance() - Method in class ome.model.fs.FilesetEntry.Details

newInstance() - Method in class ome.model.fs.FilesetEntry

newInstance() - Method in class ome.model.fs.FilesetJobLink.Details

newInstance() - Method in class ome.model.fs.FilesetJobLink

newInstance() - Method in class ome.model.internal.Details

newInstance() - Method in class ome.model.internal.Link.Details

newInstance() - Method in class ome.model.internal.Link

newInstance() - Method in class ome.model.jobs.ImportJob

Deprecated.

newInstance() - Method in class ome.model.jobs.IndexingJob

newInstance() - Method in class ome.model.jobs.IntegrityCheckJob

newInstance() - Method in class ome.model.jobs.Job.Details

newInstance() - Method in class ome.model.jobs.JobOriginalFileLink.Details

newInstance() - Method in class ome.model.jobs.JobOriginalFileLink

newInstance() - Method in class ome.model.jobs.JobStatus.Details

newInstance() - Method in class ome.model.jobs.JobStatus

newInstance() - Method in class ome.model.jobs.MetadataImportJob

newInstance() - Method in class ome.model.jobs.ParseJob

newInstance() - Method in class ome.model.jobs.PixelDataJob

newInstance() - Method in class ome.model.jobs.ScriptJob

newInstance() - Method in class ome.model.jobs.ThumbnailGenerationJob

newInstance() - Method in class ome.model.jobs.UploadJob

newInstance() - Method in class ome.model.meta.DBPatch.Details

newInstance() - Method in class ome.model.meta.DBPatch

newInstance() - Method in class ome.model.meta.Event.Details

newInstance() - Method in class ome.model.meta.Event

newInstance() - Method in class ome.model.meta.EventLog.Details

newInstance() - Method in class ome.model.meta.EventLog

newInstance() - Method in class ome.model.meta.Experimenter.Details

newInstance() - Method in class ome.model.meta.Experimenter

newInstance() - Method in class ome.model.meta.ExperimenterGroup.Details

newInstance() - Method in class ome.model.meta.ExperimenterGroup

newInstance() - Method in class ome.model.meta.ExternalInfo.Details

newInstance() - Method in class ome.model.meta.ExternalInfo

newInstance() - Method in class ome.model.meta.GroupExperimenterMap.Details

newInstance() - Method in class ome.model.meta.GroupExperimenterMap

newInstance() - Method in class ome.model.meta.Namespace.Details

newInstance() - Method in class ome.model.meta.Namespace

newInstance() - Method in class ome.model.meta.Node.Details

newInstance() - Method in class ome.model.meta.Node

newInstance() - Method in class ome.model.meta.Session.Details

newInstance() - Method in class ome.model.meta.Session

newInstance() - Method in class ome.model.meta.Share

newInstance() - Method in class ome.model.meta.ShareMember.Details

newInstance() - Method in class ome.model.meta.ShareMember

newInstance() - Method in class ome.model.roi.AffineTransform.Details

newInstance() - Method in class ome.model.roi.AffineTransform

newInstance() - Method in class ome.model.roi.Ellipse

newInstance() - Method in class ome.model.roi.Label

newInstance() - Method in class ome.model.roi.Line

newInstance() - Method in class ome.model.roi.Mask

newInstance() - Method in class ome.model.roi.Path

Deprecated.

newInstance() - Method in class ome.model.roi.Point

newInstance() - Method in class ome.model.roi.Polygon

newInstance() - Method in class ome.model.roi.Polyline

newInstance() - Method in class ome.model.roi.Rectangle

newInstance() - Method in class ome.model.roi.Roi.Details

newInstance() - Method in class ome.model.roi.Roi

newInstance() - Method in class ome.model.roi.Shape.Details

newInstance() - Method in class ome.model.screen.Plate.Details

newInstance() - Method in class ome.model.screen.Plate

newInstance() - Method in class ome.model.screen.PlateAcquisition.Details

newInstance() - Method in class ome.model.screen.PlateAcquisition

newInstance() - Method in class ome.model.screen.Reagent.Details

newInstance() - Method in class ome.model.screen.Reagent

newInstance() - Method in class ome.model.screen.Screen.Details

newInstance() - Method in class ome.model.screen.Screen

newInstance() - Method in class ome.model.screen.ScreenPlateLink.Details

newInstance() - Method in class ome.model.screen.ScreenPlateLink

newInstance() - Method in class ome.model.screen.Well.Details

newInstance() - Method in class ome.model.screen.Well

newInstance() - Method in class ome.model.screen.WellReagentLink.Details

newInstance() - Method in class ome.model.screen.WellReagentLink

newInstance() - Method in class ome.model.screen.WellSample.Details

newInstance() - Method in class ome.model.screen.WellSample

newInstance() - Method in class ome.model.stats.StatsInfo.Details

newInstance() - Method in class ome.model.stats.StatsInfo

next() - Method in class ome.util.EmptyIterator

nextPixelsDataLogForRepo(String, long, int) - Method in class ome.util.SqlAction.Impl

nextPixelsDataLogForRepo(String, long, int) - Method in interface ome.util.SqlAction

Returns arrays of longs for the following SQL return values: experimenter, eventlog, entityid as pixels, rownumber The oldest N eventlogs with action = "PIXELDATA" and entitytype = "ome.model.core.Pixels" is found per user and returned.

nextSessionId() - Method in class ome.util.actions.PostgresSqlAction

nextSessionId() - Method in interface ome.util.SqlAction

nextValue(String, int) - Method in class ome.util.actions.PostgresSqlAction

nextValue(String, int) - Method in interface ome.util.SqlAction

The implementation of this method guarantees that even if the current transaction fails that the value found will not be used by another transaction.

noCache() - Method in class ome.parameters.Parameters

Set queries to not be cacheable.

Node - Class in ome.model.meta

Node() - Constructor for class ome.model.meta.Node

Node(Long) - Constructor for class ome.model.meta.Node

Node(Long, boolean) - Constructor for class ome.model.meta.Node

Main constructor.

Node(String, String, Timestamp) - Constructor for class ome.model.meta.Node

node - Variable in class ome.model.meta.Session

NODE - Static variable in class ome.model.meta.Session

Node.Details - Class in ome.model.meta

NodeAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

NodeAnnotationLink() - Constructor for class ome.model.annotations.NodeAnnotationLink

NodeAnnotationLink(Long) - Constructor for class ome.model.annotations.NodeAnnotationLink

NodeAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.NodeAnnotationLink

Main constructor.

NodeAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.NodeAnnotationLink

NodeAnnotationLink.Details - Class in ome.model.annotations

nodeId(String) - Method in class ome.util.actions.PostgresSqlAction

nodeId(String) - Method in interface ome.util.SqlAction

noiseReduction - Variable in class ome.model.display.ChannelBinding

NOISEREDUCTION - Static variable in class ome.model.display.ChannelBinding

noLeaves() - Method in class ome.parameters.Parameters

nominalMagnification - Variable in class ome.model.acquisition.Objective

NOMINALMAGNIFICATION - Static variable in class ome.model.acquisition.Objective

noOrphan() - Method in class ome.parameters.Parameters

now() - Method in class ome.util.actions.PostgresSqlAction

now() - Method in interface ome.util.SqlAction

ns - Variable in class ome.model.annotations.Annotation

NS - Static variable in class ome.model.annotations.Annotation

nullSafeDouble(Double) - Method in class ome.util.ModelMapper

nullSafeFloat(Float) - Method in class ome.util.ModelMapper

nullSafeGet(ResultSet, String[], Object) - Method in class ome.model.units.GenericEnumType

nullSafeInt(Integer) - Method in class ome.util.ModelMapper

nullSafeLong(Long) - Method in class ome.util.ModelMapper

nullSafeSet(PreparedStatement, Object, int) - Method in class ome.model.units.GenericEnumType

NumericAnnotation - Class in ome.model.annotations

NumericAnnotation() - Constructor for class ome.model.annotations.NumericAnnotation

NumericAnnotation(Long) - Constructor for class ome.model.annotations.NumericAnnotation

NumericAnnotation(Long, boolean) - Constructor for class ome.model.annotations.NumericAnnotation

Main constructor.

O

objective - Variable in class ome.model.acquisition.Instrument

OBJECTIVE - Static variable in class ome.model.acquisition.Instrument

Objective - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Objective() - Constructor for class ome.model.acquisition.Objective

Objective(Long) - Constructor for class ome.model.acquisition.Objective

Objective(Long, boolean) - Constructor for class ome.model.acquisition.Objective

Main constructor.

Objective(Immersion, Correction, Instrument) - Constructor for class ome.model.acquisition.Objective

objective - Variable in class ome.model.acquisition.ObjectiveSettings

OBJECTIVE - Static variable in class ome.model.acquisition.ObjectiveSettings

objective - Variable in class ome.model.acquisition.OTF

OBJECTIVE - Static variable in class ome.model.acquisition.OTF

Objective.Details - Class in ome.model.acquisition

ObjectiveAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ObjectiveAnnotationLink() - Constructor for class ome.model.annotations.ObjectiveAnnotationLink

ObjectiveAnnotationLink(Long) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink

ObjectiveAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink

Main constructor.

ObjectiveAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink

ObjectiveAnnotationLink.Details - Class in ome.model.annotations

ObjectiveSettings - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ObjectiveSettings() - Constructor for class ome.model.acquisition.ObjectiveSettings

ObjectiveSettings(Long) - Constructor for class ome.model.acquisition.ObjectiveSettings

ObjectiveSettings(Long, boolean) - Constructor for class ome.model.acquisition.ObjectiveSettings

Main constructor.

ObjectiveSettings(Objective) - Constructor for class ome.model.acquisition.ObjectiveSettings

objectiveSettings - Variable in class ome.model.core.Image

OBJECTIVESETTINGS - Static variable in class ome.model.core.Image

ObjectiveSettings.Details - Class in ome.model.acquisition

objectToSQLString(String, Dialect) - Method in class ome.util.PrivilegedStringType

offset - Variable in class ome.parameters.Filter

offsetValue - Variable in class ome.model.acquisition.Detector

OFFSETVALUE - Static variable in class ome.model.acquisition.Detector

offsetValue - Variable in class ome.model.acquisition.DetectorSettings

OFFSETVALUE - Static variable in class ome.model.acquisition.DetectorSettings

ome.conditions - package ome.conditions

Forms the basis of all Omero exception hierarchies.

ome.conditions.acl - package ome.conditions.acl

Exceptions thrown due to access control violations.

ome.model - package ome.model

Central interfaces in the Omero object model.

ome.model.acquisition - package ome.model.acquisition

ome.model.annotations - package ome.model.annotations

ome.model.containers - package ome.model.containers

ome.model.core - package ome.model.core

ome.model.display - package ome.model.display

ome.model.enums - package ome.model.enums

ome.model.experiment - package ome.model.experiment

ome.model.fs - package ome.model.fs

ome.model.internal - package ome.model.internal

Contains non-code-generated model objects.

ome.model.jobs - package ome.model.jobs

ome.model.meta - package ome.model.meta

ome.model.roi - package ome.model.roi

ome.model.screen - package ome.model.screen

ome.model.stats - package ome.model.stats

ome.model.units - package ome.model.units

ome.parameters - package ome.parameters

Contains necessary parameters for various API methods throughout OMERO.

ome.services.fulltext - package ome.services.fulltext

ome.util - package ome.util

Utilities for all of OMERO.

ome.util.actions - package ome.util.actions

omeName - Variable in class ome.model.meta.Experimenter

OMENAME - Static variable in class ome.model.meta.Experimenter

opticalAxisAveraged - Variable in class ome.model.acquisition.OTF

OPTICALAXISAVERAGED - Static variable in class ome.model.acquisition.OTF

OptimisticLockException - Exception in ome.conditions

Signifies that another user has updated or deleted a given object, more specifically a query of the form : "<action> where id = ? and version = ?" applied to no rows.

OptimisticLockException(String) - Constructor for exception ome.conditions.OptimisticLockException

Options - Class in ome.parameters

Simple options container.

Options() - Constructor for class ome.parameters.Options

OriginalFile - Class in ome.model.core

These filter definitions are used by the security system to eliminate non-readable objects from queries.

OriginalFile() - Constructor for class ome.model.core.OriginalFile

OriginalFile(Long) - Constructor for class ome.model.core.OriginalFile

OriginalFile(Long, boolean) - Constructor for class ome.model.core.OriginalFile

Main constructor.

OriginalFile(String, String) - Constructor for class ome.model.core.OriginalFile

originalFile - Variable in class ome.model.fs.FilesetEntry

ORIGINALFILE - Static variable in class ome.model.fs.FilesetEntry

OriginalFile.Details - Class in ome.model.core

OriginalFileAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

OriginalFileAnnotationLink() - Constructor for class ome.model.annotations.OriginalFileAnnotationLink

OriginalFileAnnotationLink(Long) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink

OriginalFileAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink

Main constructor.

OriginalFileAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink

OriginalFileAnnotationLink.Details - Class in ome.model.annotations

originalFileLinks - Variable in class ome.model.jobs.Job

ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job

ORIGINALFILELINKSCOUNTPEROWNER - Static variable in class ome.model.jobs.Job

orphan - Variable in class ome.parameters.Options

orphan() - Method in class ome.parameters.Parameters

otf - Variable in class ome.model.acquisition.Instrument

OTF - Static variable in class ome.model.acquisition.Instrument

OTF - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

OTF() - Constructor for class ome.model.acquisition.OTF

OTF(Long) - Constructor for class ome.model.acquisition.OTF

OTF(Long, boolean) - Constructor for class ome.model.acquisition.OTF

Main constructor.

OTF(Integer, Integer, Boolean, PixelsType, String, Objective, Instrument) - Constructor for class ome.model.acquisition.OTF

otf - Variable in class ome.model.core.LogicalChannel

OTF - Static variable in class ome.model.core.LogicalChannel

OTF.Details - Class in ome.model.acquisition

OverUsageException - Exception in ome.conditions

More specific ApiUsageException, in that the current use of the OMERO API could overwhelm the server and has been blocked.

OverUsageException(String) - Constructor for exception ome.conditions.OverUsageException

OWNER - Static variable in class ome.model.internal.Details

owner - Variable in class ome.model.meta.GroupExperimenterMap

OWNER - Static variable in class ome.model.meta.GroupExperimenterMap

owner - Variable in class ome.model.meta.Session

OWNER - Static variable in class ome.model.meta.Session

owner(long) - Method in class ome.parameters.Filter

owner() - Method in class ome.parameters.Filter

owner() - Method in class ome.parameters.Parameters

OWNER_FILTER - Static variable in class ome.model.acquisition.Arc

OWNER_FILTER - Static variable in class ome.model.acquisition.Detector

OWNER_FILTER - Static variable in class ome.model.acquisition.DetectorSettings

OWNER_FILTER - Static variable in class ome.model.acquisition.Dichroic

OWNER_FILTER - Static variable in class ome.model.acquisition.Filament

OWNER_FILTER - Static variable in class ome.model.acquisition.Filter

OWNER_FILTER - Static variable in class ome.model.acquisition.FilterSet

OWNER_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink

OWNER_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink

OWNER_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource

OWNER_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment

OWNER_FILTER - Static variable in class ome.model.acquisition.Instrument

OWNER_FILTER - Static variable in class ome.model.acquisition.Laser

OWNER_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode

OWNER_FILTER - Static variable in class ome.model.acquisition.LightPath

OWNER_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink

OWNER_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink

OWNER_FILTER - Static variable in class ome.model.acquisition.LightSettings

OWNER_FILTER - Static variable in class ome.model.acquisition.LightSource

OWNER_FILTER - Static variable in class ome.model.acquisition.Microscope

OWNER_FILTER - Static variable in class ome.model.acquisition.Objective

OWNER_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings

OWNER_FILTER - Static variable in class ome.model.acquisition.OTF

OWNER_FILTER - Static variable in class ome.model.acquisition.StageLabel

OWNER_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange

OWNER_FILTER - Static variable in class ome.model.annotations.Annotation

OWNER_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.BasicAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.CommentAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.FileAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.ListAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.LongAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.MapAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.NumericAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.TagAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.TermAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.TextAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.TypeAnnotation

OWNER_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink

OWNER_FILTER - Static variable in class ome.model.annotations.XmlAnnotation

OWNER_FILTER - Static variable in class ome.model.containers.Dataset

OWNER_FILTER - Static variable in class ome.model.containers.DatasetImageLink

OWNER_FILTER - Static variable in class ome.model.containers.Folder

OWNER_FILTER - Static variable in class ome.model.containers.FolderImageLink

OWNER_FILTER - Static variable in class ome.model.containers.FolderRoiLink

OWNER_FILTER - Static variable in class ome.model.containers.Project

OWNER_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink

OWNER_FILTER - Static variable in class ome.model.core.Channel

OWNER_FILTER - Static variable in class ome.model.core.Image

OWNER_FILTER - Static variable in class ome.model.core.LogicalChannel

OWNER_FILTER - Static variable in class ome.model.core.OriginalFile

OWNER_FILTER - Static variable in class ome.model.core.Pixels

OWNER_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap

OWNER_FILTER - Static variable in class ome.model.core.PlaneInfo

OWNER_FILTER - Static variable in class ome.model.display.ChannelBinding

OWNER_FILTER - Static variable in class ome.model.display.CodomainMapContext

OWNER_FILTER - Static variable in class ome.model.display.ContrastStretchingContext

OWNER_FILTER - Static variable in class ome.model.display.PlaneSlicingContext

OWNER_FILTER - Static variable in class ome.model.display.ProjectionDef

OWNER_FILTER - Static variable in class ome.model.display.QuantumDef

OWNER_FILTER - Static variable in class ome.model.display.RenderingDef

OWNER_FILTER - Static variable in class ome.model.display.ReverseIntensityContext

OWNER_FILTER - Static variable in class ome.model.display.Thumbnail

OWNER_FILTER - Static variable in class ome.model.experiment.Experiment

OWNER_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation

OWNER_FILTER - Static variable in class ome.model.fs.Fileset

OWNER_FILTER - Static variable in class ome.model.fs.FilesetEntry

OWNER_FILTER - Static variable in class ome.model.fs.FilesetJobLink

OWNER_FILTER - Static variable in class ome.model.internal.Link

OWNER_FILTER - Static variable in class ome.model.jobs.ImportJob

Deprecated.

OWNER_FILTER - Static variable in class ome.model.jobs.IndexingJob

OWNER_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob

OWNER_FILTER - Static variable in class ome.model.jobs.Job

OWNER_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink

OWNER_FILTER - Static variable in class ome.model.jobs.MetadataImportJob

OWNER_FILTER - Static variable in class ome.model.jobs.ParseJob

OWNER_FILTER - Static variable in class ome.model.jobs.PixelDataJob

OWNER_FILTER - Static variable in class ome.model.jobs.ScriptJob

OWNER_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob

OWNER_FILTER - Static variable in class ome.model.jobs.UploadJob

OWNER_FILTER - Static variable in class ome.model.meta.ExternalInfo

OWNER_FILTER - Static variable in class ome.model.roi.AffineTransform

OWNER_FILTER - Static variable in class ome.model.roi.Ellipse

OWNER_FILTER - Static variable in class ome.model.roi.Label

OWNER_FILTER - Static variable in class ome.model.roi.Line

OWNER_FILTER - Static variable in class ome.model.roi.Mask

OWNER_FILTER - Static variable in class ome.model.roi.Path

Deprecated.

OWNER_FILTER - Static variable in class ome.model.roi.Point

OWNER_FILTER - Static variable in class ome.model.roi.Polygon

OWNER_FILTER - Static variable in class ome.model.roi.Polyline

OWNER_FILTER - Static variable in class ome.model.roi.Rectangle

OWNER_FILTER - Static variable in class ome.model.roi.Roi

OWNER_FILTER - Static variable in class ome.model.roi.Shape

OWNER_FILTER - Static variable in class ome.model.screen.Plate

OWNER_FILTER - Static variable in class ome.model.screen.PlateAcquisition

OWNER_FILTER - Static variable in class ome.model.screen.Reagent

OWNER_FILTER - Static variable in class ome.model.screen.Screen

OWNER_FILTER - Static variable in class ome.model.screen.ScreenPlateLink

OWNER_FILTER - Static variable in class ome.model.screen.Well

OWNER_FILTER - Static variable in class ome.model.screen.WellReagentLink

OWNER_FILTER - Static variable in class ome.model.screen.WellSample

OWNER_FILTER - Static variable in class ome.model.stats.StatsInfo

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen

OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well

OWNER_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel

OWNER_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels

OWNER_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder

OWNER_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project

OWNER_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image

OWNER_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument

OWNER_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument

OWNER_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter

OWNER_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet

OWNER_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath

OWNER_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter

OWNER_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet

OWNER_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath

OWNER_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile

OWNER_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument

OWNER_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument

OWNER_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image

OWNER_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi

OWNER_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset

OWNER_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder

OWNER_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset

OWNER_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset

OWNER_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument

OWNER_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation

OWNER_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment

OWNER_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument

OWNER_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job

OWNER_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument

OWNER_FILTER_PIXELS - Static variable in class ome.model.core.Image

OWNER_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile

OWNER_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels

OWNER_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels

OWNER_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate

OWNER_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen

OWNER_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef

OWNER_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset

OWNER_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well

OWNER_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen

OWNER_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder

OWNER_FILTER_ROIS - Static variable in class ome.model.core.Image

OWNER_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate

OWNER_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels

OWNER_FILTER_SHAPES - Static variable in class ome.model.roi.Roi

OWNER_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding

OWNER_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels

OWNER_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset

OWNER_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef

OWNER_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent

OWNER_FILTER_WELLS - Static variable in class ome.model.screen.Plate

OWNER_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition

OWNER_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image

OWNER_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well

OWNER_ID - Static variable in class ome.parameters.Parameters

named parameter "ownerId".

ownerId - Variable in class ome.util.SqlAction.DeleteLog

P

page(Integer, Integer) - Method in class ome.parameters.Filter

page(Integer, Integer) - Method in class ome.parameters.Parameters

paginate(Integer, Integer) - Method in class ome.parameters.Parameters

Parameters - Class in ome.parameters

container object for QueryParameter and Filter instances.

Parameters() - Constructor for class ome.parameters.Parameters

default constructor.

Parameters(Filter) - Constructor for class ome.parameters.Parameters

Filter constructor.

Parameters(Parameters) - Constructor for class ome.parameters.Parameters

copy constructor.

Parameters(QueryParameter[]) - Constructor for class ome.parameters.Parameters

copy constructor.

params - Variable in class ome.model.jobs.ParseJob

PARAMS - Static variable in class ome.model.jobs.ParseJob

parent - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink

PARENT - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink

parent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

parent - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink

PARENT - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink

parent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

parent - Variable in class ome.model.acquisition.LightPathEmissionFilterLink

PARENT - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink

parent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

parent - Variable in class ome.model.acquisition.LightPathExcitationFilterLink

PARENT - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink

parent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

parent - Variable in class ome.model.annotations.AnnotationAnnotationLink

PARENT - Static variable in class ome.model.annotations.AnnotationAnnotationLink

parent() - Method in class ome.model.annotations.AnnotationAnnotationLink

parent - Variable in class ome.model.annotations.ChannelAnnotationLink

PARENT - Static variable in class ome.model.annotations.ChannelAnnotationLink

parent() - Method in class ome.model.annotations.ChannelAnnotationLink

parent - Variable in class ome.model.annotations.DatasetAnnotationLink

PARENT - Static variable in class ome.model.annotations.DatasetAnnotationLink

parent() - Method in class ome.model.annotations.DatasetAnnotationLink

parent - Variable in class ome.model.annotations.DetectorAnnotationLink

PARENT - Static variable in class ome.model.annotations.DetectorAnnotationLink

parent() - Method in class ome.model.annotations.DetectorAnnotationLink

parent - Variable in class ome.model.annotations.DichroicAnnotationLink

PARENT - Static variable in class ome.model.annotations.DichroicAnnotationLink

parent() - Method in class ome.model.annotations.DichroicAnnotationLink

parent - Variable in class ome.model.annotations.ExperimenterAnnotationLink

PARENT - Static variable in class ome.model.annotations.ExperimenterAnnotationLink

parent() - Method in class ome.model.annotations.ExperimenterAnnotationLink

parent - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

PARENT - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

parent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

parent - Variable in class ome.model.annotations.FilesetAnnotationLink

PARENT - Static variable in class ome.model.annotations.FilesetAnnotationLink

parent() - Method in class ome.model.annotations.FilesetAnnotationLink

parent - Variable in class ome.model.annotations.FilterAnnotationLink

PARENT - Static variable in class ome.model.annotations.FilterAnnotationLink

parent() - Method in class ome.model.annotations.FilterAnnotationLink

parent - Variable in class ome.model.annotations.FolderAnnotationLink

PARENT - Static variable in class ome.model.annotations.FolderAnnotationLink

parent() - Method in class ome.model.annotations.FolderAnnotationLink

parent - Variable in class ome.model.annotations.ImageAnnotationLink

PARENT - Static variable in class ome.model.annotations.ImageAnnotationLink

parent() - Method in class ome.model.annotations.ImageAnnotationLink

parent - Variable in class ome.model.annotations.InstrumentAnnotationLink

PARENT - Static variable in class ome.model.annotations.InstrumentAnnotationLink

parent() - Method in class ome.model.annotations.InstrumentAnnotationLink

parent - Variable in class ome.model.annotations.LightPathAnnotationLink

PARENT - Static variable in class ome.model.annotations.LightPathAnnotationLink

parent() - Method in class ome.model.annotations.LightPathAnnotationLink

parent - Variable in class ome.model.annotations.LightSourceAnnotationLink

PARENT - Static variable in class ome.model.annotations.LightSourceAnnotationLink

parent() - Method in class ome.model.annotations.LightSourceAnnotationLink

parent - Variable in class ome.model.annotations.NamespaceAnnotationLink

PARENT - Static variable in class ome.model.annotations.NamespaceAnnotationLink

parent() - Method in class ome.model.annotations.NamespaceAnnotationLink

parent - Variable in class ome.model.annotations.NodeAnnotationLink

PARENT - Static variable in class ome.model.annotations.NodeAnnotationLink

parent() - Method in class ome.model.annotations.NodeAnnotationLink

parent - Variable in class ome.model.annotations.ObjectiveAnnotationLink

PARENT - Static variable in class ome.model.annotations.ObjectiveAnnotationLink

parent() - Method in class ome.model.annotations.ObjectiveAnnotationLink

parent - Variable in class ome.model.annotations.OriginalFileAnnotationLink

PARENT - Static variable in class ome.model.annotations.OriginalFileAnnotationLink

parent() - Method in class ome.model.annotations.OriginalFileAnnotationLink

parent - Variable in class ome.model.annotations.PlaneInfoAnnotationLink

PARENT - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink

parent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

parent - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

PARENT - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

parent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

parent - Variable in class ome.model.annotations.PlateAnnotationLink

PARENT - Static variable in class ome.model.annotations.PlateAnnotationLink

parent() - Method in class ome.model.annotations.PlateAnnotationLink

parent - Variable in class ome.model.annotations.ProjectAnnotationLink

PARENT - Static variable in class ome.model.annotations.ProjectAnnotationLink

parent() - Method in class ome.model.annotations.ProjectAnnotationLink

parent - Variable in class ome.model.annotations.ReagentAnnotationLink

PARENT - Static variable in class ome.model.annotations.ReagentAnnotationLink

parent() - Method in class ome.model.annotations.ReagentAnnotationLink

parent - Variable in class ome.model.annotations.RoiAnnotationLink

PARENT - Static variable in class ome.model.annotations.RoiAnnotationLink

parent() - Method in class ome.model.annotations.RoiAnnotationLink

parent - Variable in class ome.model.annotations.ScreenAnnotationLink

PARENT - Static variable in class ome.model.annotations.ScreenAnnotationLink

parent() - Method in class ome.model.annotations.ScreenAnnotationLink

parent - Variable in class ome.model.annotations.SessionAnnotationLink

PARENT - Static variable in class ome.model.annotations.SessionAnnotationLink

parent() - Method in class ome.model.annotations.SessionAnnotationLink

parent - Variable in class ome.model.annotations.ShapeAnnotationLink

PARENT - Static variable in class ome.model.annotations.ShapeAnnotationLink

parent() - Method in class ome.model.annotations.ShapeAnnotationLink

parent - Variable in class ome.model.annotations.WellAnnotationLink

PARENT - Static variable in class ome.model.annotations.WellAnnotationLink

parent() - Method in class ome.model.annotations.WellAnnotationLink

parent - Variable in class ome.model.containers.DatasetImageLink

PARENT - Static variable in class ome.model.containers.DatasetImageLink

parent() - Method in class ome.model.containers.DatasetImageLink

parent - Variable in class ome.model.containers.FolderImageLink

PARENT - Static variable in class ome.model.containers.FolderImageLink

parent() - Method in class ome.model.containers.FolderImageLink

parent - Variable in class ome.model.containers.FolderRoiLink

PARENT - Static variable in class ome.model.containers.FolderRoiLink

parent() - Method in class ome.model.containers.FolderRoiLink

parent - Variable in class ome.model.containers.ProjectDatasetLink

PARENT - Static variable in class ome.model.containers.ProjectDatasetLink

parent() - Method in class ome.model.containers.ProjectDatasetLink

parent - Variable in class ome.model.core.PixelsOriginalFileMap

PARENT - Static variable in class ome.model.core.PixelsOriginalFileMap

parent() - Method in class ome.model.core.PixelsOriginalFileMap

parent - Variable in class ome.model.fs.FilesetJobLink

PARENT - Static variable in class ome.model.fs.FilesetJobLink

parent() - Method in class ome.model.fs.FilesetJobLink

parent - Variable in class ome.model.jobs.JobOriginalFileLink

PARENT - Static variable in class ome.model.jobs.JobOriginalFileLink

parent() - Method in class ome.model.jobs.JobOriginalFileLink

parent - Variable in class ome.model.meta.GroupExperimenterMap

PARENT - Static variable in class ome.model.meta.GroupExperimenterMap

parent() - Method in class ome.model.meta.GroupExperimenterMap

parent - Variable in class ome.model.meta.ShareMember

PARENT - Static variable in class ome.model.meta.ShareMember

parent() - Method in class ome.model.meta.ShareMember

parent - Variable in class ome.model.screen.ScreenPlateLink

PARENT - Static variable in class ome.model.screen.ScreenPlateLink

parent() - Method in class ome.model.screen.ScreenPlateLink

parent - Variable in class ome.model.screen.WellReagentLink

PARENT - Static variable in class ome.model.screen.WellReagentLink

parent() - Method in class ome.model.screen.WellReagentLink

parentFolder - Variable in class ome.model.containers.Folder

PARENTFOLDER - Static variable in class ome.model.containers.Folder

parseIndexes() - Method in class ome.util.LSID

Attempts to parse and return the indexes for the LSID parsed from the LSID's string representation.

parseJavaClass() - Method in class ome.util.LSID

Attempts to parse and return the concrete Java class for the LSID from the LSID's string representation.

ParseJob - Class in ome.model.jobs

ParseJob() - Constructor for class ome.model.jobs.ParseJob

ParseJob(Long) - Constructor for class ome.model.jobs.ParseJob

ParseJob(Long, boolean) - Constructor for class ome.model.jobs.ParseJob

Main constructor.

parseString(String) - Static method in class ome.model.internal.Permissions

partial - Variable in class ome.model.core.Image

PARTIAL - Static variable in class ome.model.core.Image

path - Variable in class ome.model.acquisition.OTF

PATH - Static variable in class ome.model.acquisition.OTF

path - Variable in class ome.model.core.OriginalFile

PATH - Static variable in class ome.model.core.OriginalFile

Path - Class in ome.model.roi

Deprecated.

Path() - Constructor for class ome.model.roi.Path

Deprecated.

Path(Long) - Constructor for class ome.model.roi.Path

Deprecated.

Path(Long, boolean) - Constructor for class ome.model.roi.Path

Deprecated.

Main constructor.

path - Variable in class ome.util.SqlAction.DeleteLog

Period - Class in ome.parameters

parameter which defines the ordering as well as the start and offset for a List-valued result set.

Period(int, int) - Constructor for class ome.parameters.Period

PermDetails - Class in ome.util

wrapper class which can be used in HQL queries to properly load the full context for a permissions object.

PermDetails(IObject) - Constructor for class ome.util.PermDetails

PermissionMismatchGroupSecurityViolation - Exception in ome.conditions

Extension of GroupSecurityViolation signalling that an object has a permission which does not match the group permissions.

PermissionMismatchGroupSecurityViolation(String) - Constructor for exception ome.conditions.PermissionMismatchGroupSecurityViolation

PERMISSIONS - Static variable in class ome.model.internal.Details

Permissions - Class in ome.model.internal

class responsible for storing all Right/Role-based information for entities as well as various flags for the containing Details instance.

Permissions() - Constructor for class ome.model.internal.Permissions

simple constructor.

Permissions(Permissions) - Constructor for class ome.model.internal.Permissions

copy constructor.

Permissions.Flag - Enum in ome.model.internal

Currently unused.

Permissions.Right - Enum in ome.model.internal

enumeration of granted rights.

Permissions.Role - Enum in ome.model.internal

enumeration of currently active roles.

PERMS_FILTER - Static variable in class ome.model.acquisition.Arc

PERMS_FILTER - Static variable in class ome.model.acquisition.Detector

PERMS_FILTER - Static variable in class ome.model.acquisition.DetectorSettings

PERMS_FILTER - Static variable in class ome.model.acquisition.Dichroic

PERMS_FILTER - Static variable in class ome.model.acquisition.Filament

PERMS_FILTER - Static variable in class ome.model.acquisition.Filter

PERMS_FILTER - Static variable in class ome.model.acquisition.FilterSet

PERMS_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink

PERMS_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink

PERMS_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource

PERMS_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment

PERMS_FILTER - Static variable in class ome.model.acquisition.Instrument

PERMS_FILTER - Static variable in class ome.model.acquisition.Laser

PERMS_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode

PERMS_FILTER - Static variable in class ome.model.acquisition.LightPath

PERMS_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink

PERMS_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink

PERMS_FILTER - Static variable in class ome.model.acquisition.LightSettings

PERMS_FILTER - Static variable in class ome.model.acquisition.LightSource

PERMS_FILTER - Static variable in class ome.model.acquisition.Microscope

PERMS_FILTER - Static variable in class ome.model.acquisition.Objective

PERMS_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings

PERMS_FILTER - Static variable in class ome.model.acquisition.OTF

PERMS_FILTER - Static variable in class ome.model.acquisition.StageLabel

PERMS_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange

PERMS_FILTER - Static variable in class ome.model.annotations.Annotation

PERMS_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.BasicAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.CommentAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.FileAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.ListAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.LongAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.MapAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.NumericAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.TagAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.TermAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.TextAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.TypeAnnotation

PERMS_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink

PERMS_FILTER - Static variable in class ome.model.annotations.XmlAnnotation

PERMS_FILTER - Static variable in class ome.model.containers.Dataset

PERMS_FILTER - Static variable in class ome.model.containers.DatasetImageLink

PERMS_FILTER - Static variable in class ome.model.containers.Folder

PERMS_FILTER - Static variable in class ome.model.containers.FolderImageLink

PERMS_FILTER - Static variable in class ome.model.containers.FolderRoiLink

PERMS_FILTER - Static variable in class ome.model.containers.Project

PERMS_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink

PERMS_FILTER - Static variable in class ome.model.core.Channel

PERMS_FILTER - Static variable in class ome.model.core.Image

PERMS_FILTER - Static variable in class ome.model.core.LogicalChannel

PERMS_FILTER - Static variable in class ome.model.core.OriginalFile

PERMS_FILTER - Static variable in class ome.model.core.Pixels

PERMS_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap

PERMS_FILTER - Static variable in class ome.model.core.PlaneInfo

PERMS_FILTER - Static variable in class ome.model.display.ChannelBinding

PERMS_FILTER - Static variable in class ome.model.display.CodomainMapContext

PERMS_FILTER - Static variable in class ome.model.display.ContrastStretchingContext

PERMS_FILTER - Static variable in class ome.model.display.PlaneSlicingContext

PERMS_FILTER - Static variable in class ome.model.display.ProjectionDef

PERMS_FILTER - Static variable in class ome.model.display.QuantumDef

PERMS_FILTER - Static variable in class ome.model.display.RenderingDef

PERMS_FILTER - Static variable in class ome.model.display.ReverseIntensityContext

PERMS_FILTER - Static variable in class ome.model.display.Thumbnail

PERMS_FILTER - Static variable in class ome.model.experiment.Experiment

PERMS_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation

PERMS_FILTER - Static variable in class ome.model.fs.Fileset

PERMS_FILTER - Static variable in class ome.model.fs.FilesetEntry

PERMS_FILTER - Static variable in class ome.model.fs.FilesetJobLink

PERMS_FILTER - Static variable in class ome.model.internal.Link

PERMS_FILTER - Static variable in class ome.model.jobs.ImportJob

Deprecated.

PERMS_FILTER - Static variable in class ome.model.jobs.IndexingJob

PERMS_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob

PERMS_FILTER - Static variable in class ome.model.jobs.Job

PERMS_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink

PERMS_FILTER - Static variable in class ome.model.jobs.MetadataImportJob

PERMS_FILTER - Static variable in class ome.model.jobs.ParseJob

PERMS_FILTER - Static variable in class ome.model.jobs.PixelDataJob

PERMS_FILTER - Static variable in class ome.model.jobs.ScriptJob

PERMS_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob

PERMS_FILTER - Static variable in class ome.model.jobs.UploadJob

PERMS_FILTER - Static variable in class ome.model.meta.ExternalInfo

PERMS_FILTER - Static variable in class ome.model.roi.AffineTransform

PERMS_FILTER - Static variable in class ome.model.roi.Ellipse

PERMS_FILTER - Static variable in class ome.model.roi.Label

PERMS_FILTER - Static variable in class ome.model.roi.Line

PERMS_FILTER - Static variable in class ome.model.roi.Mask

PERMS_FILTER - Static variable in class ome.model.roi.Path

Deprecated.

PERMS_FILTER - Static variable in class ome.model.roi.Point

PERMS_FILTER - Static variable in class ome.model.roi.Polygon

PERMS_FILTER - Static variable in class ome.model.roi.Polyline

PERMS_FILTER - Static variable in class ome.model.roi.Rectangle

PERMS_FILTER - Static variable in class ome.model.roi.Roi

PERMS_FILTER - Static variable in class ome.model.roi.Shape

PERMS_FILTER - Static variable in class ome.model.screen.Plate

PERMS_FILTER - Static variable in class ome.model.screen.PlateAcquisition

PERMS_FILTER - Static variable in class ome.model.screen.Reagent

PERMS_FILTER - Static variable in class ome.model.screen.Screen

PERMS_FILTER - Static variable in class ome.model.screen.ScreenPlateLink

PERMS_FILTER - Static variable in class ome.model.screen.Well

PERMS_FILTER - Static variable in class ome.model.screen.WellReagentLink

PERMS_FILTER - Static variable in class ome.model.screen.WellSample

PERMS_FILTER - Static variable in class ome.model.stats.StatsInfo

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen

PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well

PERMS_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel

PERMS_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels

PERMS_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder

PERMS_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project

PERMS_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image

PERMS_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument

PERMS_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument

PERMS_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter

PERMS_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet

PERMS_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath

PERMS_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter

PERMS_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet

PERMS_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath

PERMS_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile

PERMS_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument

PERMS_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument

PERMS_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image

PERMS_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi

PERMS_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset

PERMS_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder

PERMS_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset

PERMS_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset

PERMS_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument

PERMS_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation

PERMS_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment

PERMS_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument

PERMS_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job

PERMS_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument

PERMS_FILTER_PIXELS - Static variable in class ome.model.core.Image

PERMS_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile

PERMS_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels

PERMS_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels

PERMS_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate

PERMS_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen

PERMS_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef

PERMS_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset

PERMS_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well

PERMS_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen

PERMS_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder

PERMS_FILTER_ROIS - Static variable in class ome.model.core.Image

PERMS_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate

PERMS_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels

PERMS_FILTER_SHAPES - Static variable in class ome.model.roi.Roi

PERMS_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding

PERMS_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels

PERMS_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset

PERMS_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef

PERMS_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent

PERMS_FILTER_WELLS - Static variable in class ome.model.screen.Plate

PERMS_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition

PERMS_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image

PERMS_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well

photometricInterpretation - Variable in class ome.model.core.LogicalChannel

PHOTOMETRICINTERPRETATION - Static variable in class ome.model.core.LogicalChannel

PhotometricInterpretation - Class in ome.model.enums

PhotometricInterpretation() - Constructor for class ome.model.enums.PhotometricInterpretation

PhotometricInterpretation(Long) - Constructor for class ome.model.enums.PhotometricInterpretation

PhotometricInterpretation(Long, boolean) - Constructor for class ome.model.enums.PhotometricInterpretation

Main constructor.

PhotometricInterpretation(String) - Constructor for class ome.model.enums.PhotometricInterpretation

PhotometricInterpretation.Details - Class in ome.model.enums

physicalSizeX - Variable in class ome.model.core.Pixels

PHYSICALSIZEX - Static variable in class ome.model.core.Pixels

physicalSizeY - Variable in class ome.model.core.Pixels

PHYSICALSIZEY - Static variable in class ome.model.core.Pixels

physicalSizeZ - Variable in class ome.model.core.Pixels

PHYSICALSIZEZ - Static variable in class ome.model.core.Pixels

pinHoleSize - Variable in class ome.model.core.LogicalChannel

PINHOLESIZE - Static variable in class ome.model.core.LogicalChannel

PixelData - Class in ome.util

Represents a block of pixel data.

PixelData(String, ByteBuffer) - Constructor for class ome.util.PixelData

Default constructor.

PixelDataJob - Class in ome.model.jobs

PixelDataJob() - Constructor for class ome.model.jobs.PixelDataJob

PixelDataJob(Long) - Constructor for class ome.model.jobs.PixelDataJob

PixelDataJob(Long, boolean) - Constructor for class ome.model.jobs.PixelDataJob

Main constructor.

pixels - Variable in class ome.model.core.Channel

PIXELS - Static variable in class ome.model.core.Channel

pixels - Variable in class ome.model.core.Image

PIXELS - Static variable in class ome.model.core.Image

Pixels - Class in ome.model.core

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Pixels() - Constructor for class ome.model.core.Pixels

Pixels(Long) - Constructor for class ome.model.core.Pixels

Pixels(Long, boolean) - Constructor for class ome.model.core.Pixels

Main constructor.

Pixels(Image, PixelsType, Integer, Integer, Integer, Integer, Integer, String, DimensionOrder) - Constructor for class ome.model.core.Pixels

pixels - Variable in class ome.model.core.PlaneInfo

PIXELS - Static variable in class ome.model.core.PlaneInfo

pixels - Variable in class ome.model.display.RenderingDef

PIXELS - Static variable in class ome.model.display.RenderingDef

pixels - Variable in class ome.model.display.Thumbnail

PIXELS - Static variable in class ome.model.display.Thumbnail

pixels - Variable in class ome.model.roi.Mask

PIXELS - Static variable in class ome.model.roi.Mask

Pixels.Details - Class in ome.model.core

pixelsFileMaps - Variable in class ome.model.core.OriginalFile

PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile

pixelsFileMaps - Variable in class ome.model.core.Pixels

PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels

PIXELSFILEMAPSCOUNTPEROWNER - Static variable in class ome.model.core.OriginalFile

PIXELSFILEMAPSCOUNTPEROWNER - Static variable in class ome.model.core.Pixels

pixelsID - Variable in exception ome.conditions.MissingPyramidException

PixelsOriginalFileMap - Class in ome.model.core

These filter definitions are used by the security system to eliminate non-readable objects from queries.

PixelsOriginalFileMap() - Constructor for class ome.model.core.PixelsOriginalFileMap

PixelsOriginalFileMap(Long) - Constructor for class ome.model.core.PixelsOriginalFileMap

PixelsOriginalFileMap(Long, boolean) - Constructor for class ome.model.core.PixelsOriginalFileMap

Main constructor.

PixelsOriginalFileMap(IObject, IObject) - Constructor for class ome.model.core.PixelsOriginalFileMap

PixelsOriginalFileMap.Details - Class in ome.model.core

pixelsType - Variable in class ome.model.acquisition.OTF

PIXELSTYPE - Static variable in class ome.model.acquisition.OTF

pixelsType - Variable in class ome.model.core.Pixels

PIXELSTYPE - Static variable in class ome.model.core.Pixels

PixelsType - Class in ome.model.enums

PixelsType() - Constructor for class ome.model.enums.PixelsType

PixelsType(Long) - Constructor for class ome.model.enums.PixelsType

PixelsType(Long, boolean) - Constructor for class ome.model.enums.PixelsType

Main constructor.

PixelsType(String) - Constructor for class ome.model.enums.PixelsType

pixelsType - Variable in class ome.util.PixelData

Type of the pixel data.

PixelsType.Details - Class in ome.model.enums

planeInfo - Variable in class ome.model.core.Pixels

PLANEINFO - Static variable in class ome.model.core.Pixels

PlaneInfo - Class in ome.model.core

These filter definitions are used by the security system to eliminate non-readable objects from queries.

PlaneInfo() - Constructor for class ome.model.core.PlaneInfo

PlaneInfo(Long) - Constructor for class ome.model.core.PlaneInfo

PlaneInfo(Long, boolean) - Constructor for class ome.model.core.PlaneInfo

Main constructor.

PlaneInfo(Pixels, Integer, Integer, Integer) - Constructor for class ome.model.core.PlaneInfo

PlaneInfo.Details - Class in ome.model.core

PlaneInfoAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

PlaneInfoAnnotationLink() - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink

PlaneInfoAnnotationLink(Long) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink

PlaneInfoAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink

Main constructor.

PlaneInfoAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink

PlaneInfoAnnotationLink.Details - Class in ome.model.annotations

planePrevious - Variable in class ome.model.display.PlaneSlicingContext

PLANEPREVIOUS - Static variable in class ome.model.display.PlaneSlicingContext

planeSelected - Variable in class ome.model.display.PlaneSlicingContext

PLANESELECTED - Static variable in class ome.model.display.PlaneSlicingContext

PlaneSlicingContext - Class in ome.model.display

PlaneSlicingContext() - Constructor for class ome.model.display.PlaneSlicingContext

PlaneSlicingContext(Long) - Constructor for class ome.model.display.PlaneSlicingContext

PlaneSlicingContext(Long, boolean) - Constructor for class ome.model.display.PlaneSlicingContext

Main constructor.

PlaneSlicingContext(Integer, Integer, Integer, Integer, Boolean) - Constructor for class ome.model.display.PlaneSlicingContext

Plate - Class in ome.model.screen

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Plate() - Constructor for class ome.model.screen.Plate

Plate(Long) - Constructor for class ome.model.screen.Plate

Plate(Long, boolean) - Constructor for class ome.model.screen.Plate

Main constructor.

Plate(String) - Constructor for class ome.model.screen.Plate

plate - Variable in class ome.model.screen.PlateAcquisition

PLATE - Static variable in class ome.model.screen.PlateAcquisition

plate - Variable in class ome.model.screen.Well

PLATE - Static variable in class ome.model.screen.Well

Plate.Details - Class in ome.model.screen

PlateAcquisition - Class in ome.model.screen

These filter definitions are used by the security system to eliminate non-readable objects from queries.

PlateAcquisition() - Constructor for class ome.model.screen.PlateAcquisition

PlateAcquisition(Long) - Constructor for class ome.model.screen.PlateAcquisition

PlateAcquisition(Long, boolean) - Constructor for class ome.model.screen.PlateAcquisition

Main constructor.

PlateAcquisition(Plate) - Constructor for class ome.model.screen.PlateAcquisition

plateAcquisition - Variable in class ome.model.screen.WellSample

PLATEACQUISITION - Static variable in class ome.model.screen.WellSample

PlateAcquisition.Details - Class in ome.model.screen

PlateAcquisitionAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

PlateAcquisitionAnnotationLink() - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink

PlateAcquisitionAnnotationLink(Long) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink

PlateAcquisitionAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink

Main constructor.

PlateAcquisitionAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink

PlateAcquisitionAnnotationLink.Details - Class in ome.model.annotations

plateAcquisitions - Variable in class ome.model.screen.Plate

PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate

PlateAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

PlateAnnotationLink() - Constructor for class ome.model.annotations.PlateAnnotationLink

PlateAnnotationLink(Long) - Constructor for class ome.model.annotations.PlateAnnotationLink

PlateAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.PlateAnnotationLink

Main constructor.

PlateAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.PlateAnnotationLink

PlateAnnotationLink.Details - Class in ome.model.annotations

plateLinks - Variable in class ome.model.screen.Screen

PLATELINKS - Static variable in class ome.model.screen.Screen

PLATELINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Screen

pockelCell - Variable in class ome.model.acquisition.Laser

POCKELCELL - Static variable in class ome.model.acquisition.Laser

pockelCellSetting - Variable in class ome.model.core.LogicalChannel

POCKELCELLSETTING - Static variable in class ome.model.core.LogicalChannel

Point - Class in ome.model.roi

Point() - Constructor for class ome.model.roi.Point

Point(Long) - Constructor for class ome.model.roi.Point

Point(Long, boolean) - Constructor for class ome.model.roi.Point

Main constructor.

points - Variable in class ome.model.roi.Polygon

POINTS - Static variable in class ome.model.roi.Polygon

points - Variable in class ome.model.roi.Polyline

POINTS - Static variable in class ome.model.roi.Polyline

Polygon - Class in ome.model.roi

Polygon() - Constructor for class ome.model.roi.Polygon

Polygon(Long) - Constructor for class ome.model.roi.Polygon

Polygon(Long, boolean) - Constructor for class ome.model.roi.Polygon

Main constructor.

Polyline - Class in ome.model.roi

Polyline() - Constructor for class ome.model.roi.Polyline

Polyline(Long) - Constructor for class ome.model.roi.Polyline

Polyline(Long, boolean) - Constructor for class ome.model.roi.Polyline

Main constructor.

pop(Object) - Method in class ome.util.ContextFilter

positionX - Variable in class ome.model.acquisition.StageLabel

POSITIONX - Static variable in class ome.model.acquisition.StageLabel

positionX - Variable in class ome.model.core.PlaneInfo

POSITIONX - Static variable in class ome.model.core.PlaneInfo

positionY - Variable in class ome.model.acquisition.StageLabel

POSITIONY - Static variable in class ome.model.acquisition.StageLabel

positionY - Variable in class ome.model.core.PlaneInfo

POSITIONY - Static variable in class ome.model.core.PlaneInfo

positionZ - Variable in class ome.model.acquisition.StageLabel

POSITIONZ - Static variable in class ome.model.acquisition.StageLabel

positionZ - Variable in class ome.model.core.PlaneInfo

POSITIONZ - Static variable in class ome.model.core.PlaneInfo

PostgresqlDialect - Class in ome.util

select i from Image i where i.id in (:ids) becomes select i from Image i where i.id in (select id from temp_ids());

PostgresqlDialect() - Constructor for class ome.util.PostgresqlDialect

PostgresSqlAction - Class in ome.util.actions

PostgresSqlAction(JdbcTemplate) - Constructor for class ome.util.actions.PostgresSqlAction

posX - Variable in class ome.model.screen.WellSample

POSX - Static variable in class ome.model.screen.WellSample

posY - Variable in class ome.model.screen.WellSample

POSY - Static variable in class ome.model.screen.WellSample

Pow(long, int) - Static method in class ome.model.units.Conversion

Static helper for creating Conversion.Pow instances.

Pow(long, int) - Constructor for class ome.model.units.Conversion.Pow

power - Variable in class ome.model.acquisition.LightSource

POWER - Static variable in class ome.model.acquisition.LightSource

Power - Class in ome.model.units

class storing both a Power and a unit for that Power (e.g.

Power() - Constructor for class ome.model.units.Power

Deprecated.

Power(double, String) - Constructor for class ome.model.units.Power

Power(double, UnitsPower) - Constructor for class ome.model.units.Power

Power(double, Unit<Power>) - Constructor for class ome.model.units.Power

Power(Power) - Constructor for class ome.model.units.Power

prepareSession(long, long, long) - Method in class ome.util.actions.PostgresSqlAction

prepareSession(long, long, long) - Method in interface ome.util.SqlAction

Stores the current event context information in a temporary table so that triggers can make use of them.

Pressure - Class in ome.model.units

class storing both a Pressure and a unit for that Pressure (e.g.

Pressure() - Constructor for class ome.model.units.Pressure

Deprecated.

Pressure(double, String) - Constructor for class ome.model.units.Pressure

Pressure(double, UnitsPressure) - Constructor for class ome.model.units.Pressure

Pressure(double, Unit<Pressure>) - Constructor for class ome.model.units.Pressure

Pressure(Pressure) - Constructor for class ome.model.units.Pressure

previousContext(int) - Method in class ome.util.ContextFilter

previousPatch - Variable in class ome.model.meta.DBPatch

PREVIOUSPATCH - Static variable in class ome.model.meta.DBPatch

previousVersion - Variable in class ome.model.meta.DBPatch

PREVIOUSVERSION - Static variable in class ome.model.meta.DBPatch

Primitive - Interface in ome.model.internal

marker interface for all non-filterable types.

printThrowable(Throwable) - Method in class ome.util.SqlAction.Impl

PRIVATE - Static variable in class ome.model.internal.Permissions

an immutable Permissions instance with permissions only for the object owner..

PrivilegedStringType - Class in ome.util

A Hibernate type for string-valued properties where only privileged readers see non-null values.

PrivilegedStringType(VarcharTypeDescriptor, PrivilegedStringTypeDescriptor) - Constructor for class ome.util.PrivilegedStringType

PrivilegedStringType.FilteredFullAdmin - Class in ome.util

String type for which users read null except for full administrators.

PrivilegedStringType.FilteredFullAdminHidden - Class in ome.util

String type for which users read a dummy value except for full administrators.

PrivilegedStringType.FilteredFullAdminUUID - Class in ome.util

String type for which users read a dummy UUID except for full administrators.

PrivilegedStringType.FilteredRelatedUser - Class in ome.util

String type for which users read null except for (potentially) related users.

PrivilegedStringType.FilteredRelatedUserHidden - Class in ome.util

String type for which users read a dummy value except for (potentially) related users.

PrivilegedStringTypeDescriptor - Class in ome.util

The type descriptors for the privileged string types of PrivilegedStringType.

PrivilegedStringTypeDescriptor() - Constructor for class ome.util.PrivilegedStringTypeDescriptor

PrivilegedStringTypeDescriptor.Filter - Enum in ome.util

The privileged string filters that may be applied.

PrivilegedStringTypeDescriptor.FilteredFullAdmin - Class in ome.util

Type descriptor corresponding to Filter#FULL_ADMIN for PrivilegedStringType.FilteredFullAdmin.

PrivilegedStringTypeDescriptor.FilteredFullAdminHidden - Class in ome.util

Type descriptor corresponding to Filter#FULL_ADMIN_HIDDEN for PrivilegedStringType.FilteredFullAdminHidden.

PrivilegedStringTypeDescriptor.FilteredFullAdminUUID - Class in ome.util

Type descriptor corresponding to Filter#FULL_ADMIN_UUID for PrivilegedStringType.FilteredFullAdminUUID.

PrivilegedStringTypeDescriptor.FilteredRelatedUser - Class in ome.util

Type descriptor corresponding to Filter#RELATED_USER for PrivilegedStringType.FilteredRelatedUser.

PrivilegedStringTypeDescriptor.FilteredRelatedUserHidden - Class in ome.util

Type descriptor corresponding to Filter#RELATED_USER_HIDDEN for PrivilegedStringType.FilteredRelatedUserHidden.

Project - Class in ome.model.containers

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Project() - Constructor for class ome.model.containers.Project

Project(Long) - Constructor for class ome.model.containers.Project

Project(Long, boolean) - Constructor for class ome.model.containers.Project

Main constructor.

Project(String) - Constructor for class ome.model.containers.Project

Project.Details - Class in ome.model.containers

ProjectAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ProjectAnnotationLink() - Constructor for class ome.model.annotations.ProjectAnnotationLink

ProjectAnnotationLink(Long) - Constructor for class ome.model.annotations.ProjectAnnotationLink

ProjectAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ProjectAnnotationLink

Main constructor.

ProjectAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ProjectAnnotationLink

ProjectAnnotationLink.Details - Class in ome.model.annotations

ProjectDatasetLink - Class in ome.model.containers

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ProjectDatasetLink() - Constructor for class ome.model.containers.ProjectDatasetLink

ProjectDatasetLink(Long) - Constructor for class ome.model.containers.ProjectDatasetLink

ProjectDatasetLink(Long, boolean) - Constructor for class ome.model.containers.ProjectDatasetLink

Main constructor.

ProjectDatasetLink(IObject, IObject) - Constructor for class ome.model.containers.ProjectDatasetLink

ProjectDatasetLink.Details - Class in ome.model.containers

ProjectionAxis - Class in ome.model.enums

ProjectionAxis() - Constructor for class ome.model.enums.ProjectionAxis

ProjectionAxis(Long) - Constructor for class ome.model.enums.ProjectionAxis

ProjectionAxis(Long, boolean) - Constructor for class ome.model.enums.ProjectionAxis

Main constructor.

ProjectionAxis(String) - Constructor for class ome.model.enums.ProjectionAxis

ProjectionAxis.Details - Class in ome.model.enums

ProjectionDef - Class in ome.model.display

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ProjectionDef() - Constructor for class ome.model.display.ProjectionDef

ProjectionDef(Long) - Constructor for class ome.model.display.ProjectionDef

ProjectionDef(Long, boolean) - Constructor for class ome.model.display.ProjectionDef

Main constructor.

ProjectionDef(RenderingDef, ProjectionAxis, ProjectionType, Boolean) - Constructor for class ome.model.display.ProjectionDef

ProjectionDef.Details - Class in ome.model.display

projections - Variable in class ome.model.display.RenderingDef

PROJECTIONS - Static variable in class ome.model.display.RenderingDef

ProjectionType - Class in ome.model.enums

ProjectionType() - Constructor for class ome.model.enums.ProjectionType

ProjectionType(Long) - Constructor for class ome.model.enums.ProjectionType

ProjectionType(Long, boolean) - Constructor for class ome.model.enums.ProjectionType

Main constructor.

ProjectionType(String) - Constructor for class ome.model.enums.ProjectionType

ProjectionType.Details - Class in ome.model.enums

projectLinks - Variable in class ome.model.containers.Dataset

PROJECTLINKS - Static variable in class ome.model.containers.Dataset

PROJECTLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset

protocolDescription - Variable in class ome.model.screen.Screen

PROTOCOLDESCRIPTION - Static variable in class ome.model.screen.Screen

protocolIdentifier - Variable in class ome.model.screen.Screen

PROTOCOLIDENTIFIER - Static variable in class ome.model.screen.Screen

proxy() - Method in class ome.model.acquisition.Arc

proxy() - Method in class ome.model.acquisition.Detector

proxy() - Method in class ome.model.acquisition.DetectorSettings

proxy() - Method in class ome.model.acquisition.Dichroic

proxy() - Method in class ome.model.acquisition.Filament

proxy() - Method in class ome.model.acquisition.Filter

proxy() - Method in class ome.model.acquisition.FilterSet

proxy() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

proxy() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

proxy() - Method in class ome.model.acquisition.GenericExcitationSource

proxy() - Method in class ome.model.acquisition.ImagingEnvironment

proxy() - Method in class ome.model.acquisition.Instrument

proxy() - Method in class ome.model.acquisition.Laser

proxy() - Method in class ome.model.acquisition.LightEmittingDiode

proxy() - Method in class ome.model.acquisition.LightPath

proxy() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

proxy() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

proxy() - Method in class ome.model.acquisition.LightSettings

proxy() - Method in class ome.model.acquisition.Microscope

proxy() - Method in class ome.model.acquisition.Objective

proxy() - Method in class ome.model.acquisition.ObjectiveSettings

proxy() - Method in class ome.model.acquisition.OTF

proxy() - Method in class ome.model.acquisition.StageLabel

proxy() - Method in class ome.model.acquisition.TransmittanceRange

proxy() - Method in class ome.model.annotations.AnnotationAnnotationLink

proxy() - Method in class ome.model.annotations.BooleanAnnotation

proxy() - Method in class ome.model.annotations.ChannelAnnotationLink

proxy() - Method in class ome.model.annotations.CommentAnnotation

proxy() - Method in class ome.model.annotations.DatasetAnnotationLink

proxy() - Method in class ome.model.annotations.DetectorAnnotationLink

proxy() - Method in class ome.model.annotations.DichroicAnnotationLink

proxy() - Method in class ome.model.annotations.DoubleAnnotation

proxy() - Method in class ome.model.annotations.ExperimenterAnnotationLink

proxy() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

proxy() - Method in class ome.model.annotations.FileAnnotation

proxy() - Method in class ome.model.annotations.FilesetAnnotationLink

proxy() - Method in class ome.model.annotations.FilterAnnotationLink

proxy() - Method in class ome.model.annotations.FolderAnnotationLink

proxy() - Method in class ome.model.annotations.ImageAnnotationLink

proxy() - Method in class ome.model.annotations.InstrumentAnnotationLink

proxy() - Method in class ome.model.annotations.LightPathAnnotationLink

proxy() - Method in class ome.model.annotations.LightSourceAnnotationLink

proxy() - Method in class ome.model.annotations.ListAnnotation

proxy() - Method in class ome.model.annotations.LongAnnotation

proxy() - Method in class ome.model.annotations.MapAnnotation

proxy() - Method in class ome.model.annotations.NamespaceAnnotationLink

proxy() - Method in class ome.model.annotations.NodeAnnotationLink

proxy() - Method in class ome.model.annotations.ObjectiveAnnotationLink

proxy() - Method in class ome.model.annotations.OriginalFileAnnotationLink

proxy() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

proxy() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

proxy() - Method in class ome.model.annotations.PlateAnnotationLink

proxy() - Method in class ome.model.annotations.ProjectAnnotationLink

proxy() - Method in class ome.model.annotations.ReagentAnnotationLink

proxy() - Method in class ome.model.annotations.RoiAnnotationLink

proxy() - Method in class ome.model.annotations.ScreenAnnotationLink

proxy() - Method in class ome.model.annotations.SessionAnnotationLink

proxy() - Method in class ome.model.annotations.ShapeAnnotationLink

proxy() - Method in class ome.model.annotations.TagAnnotation

proxy() - Method in class ome.model.annotations.TermAnnotation

proxy() - Method in class ome.model.annotations.TimestampAnnotation

proxy() - Method in class ome.model.annotations.WellAnnotationLink

proxy() - Method in class ome.model.annotations.XmlAnnotation

proxy() - Method in class ome.model.containers.Dataset

proxy() - Method in class ome.model.containers.DatasetImageLink

proxy() - Method in class ome.model.containers.Folder

proxy() - Method in class ome.model.containers.FolderImageLink

proxy() - Method in class ome.model.containers.FolderRoiLink

proxy() - Method in class ome.model.containers.Project

proxy() - Method in class ome.model.containers.ProjectDatasetLink

proxy() - Method in class ome.model.core.Channel

proxy() - Method in class ome.model.core.Image

proxy() - Method in class ome.model.core.LogicalChannel

proxy() - Method in class ome.model.core.OriginalFile

proxy() - Method in class ome.model.core.Pixels

proxy() - Method in class ome.model.core.PixelsOriginalFileMap

proxy() - Method in class ome.model.core.PlaneInfo

proxy() - Method in class ome.model.display.ChannelBinding

proxy() - Method in class ome.model.display.ContrastStretchingContext

proxy() - Method in class ome.model.display.PlaneSlicingContext

proxy() - Method in class ome.model.display.ProjectionDef

proxy() - Method in class ome.model.display.QuantumDef

proxy() - Method in class ome.model.display.RenderingDef

proxy() - Method in class ome.model.display.ReverseIntensityContext

proxy() - Method in class ome.model.display.Thumbnail

proxy() - Method in class ome.model.enums.AcquisitionMode

proxy() - Method in class ome.model.enums.AdminPrivilege

proxy() - Method in class ome.model.enums.ArcType

proxy() - Method in class ome.model.enums.Binning

proxy() - Method in class ome.model.enums.ChecksumAlgorithm

proxy() - Method in class ome.model.enums.ContrastMethod

proxy() - Method in class ome.model.enums.Correction

proxy() - Method in class ome.model.enums.DetectorType

proxy() - Method in class ome.model.enums.DimensionOrder

proxy() - Method in class ome.model.enums.EventType

proxy() - Method in class ome.model.enums.ExperimentType

proxy() - Method in class ome.model.enums.Family

proxy() - Method in class ome.model.enums.FilamentType

proxy() - Method in class ome.model.enums.FilterType

proxy() - Method in class ome.model.enums.Format

proxy() - Method in class ome.model.enums.Illumination

proxy() - Method in class ome.model.enums.Immersion

proxy() - Method in class ome.model.enums.LaserMedium

proxy() - Method in class ome.model.enums.LaserType

proxy() - Method in class ome.model.enums.Medium

proxy() - Method in class ome.model.enums.MicrobeamManipulationType

proxy() - Method in class ome.model.enums.MicroscopeType

proxy() - Method in class ome.model.enums.PhotometricInterpretation

proxy() - Method in class ome.model.enums.PixelsType

proxy() - Method in class ome.model.enums.ProjectionAxis

proxy() - Method in class ome.model.enums.ProjectionType

proxy() - Method in class ome.model.enums.Pulse

proxy() - Method in class ome.model.enums.RenderingModel

proxy() - Method in class ome.model.experiment.Experiment

proxy() - Method in class ome.model.experiment.MicrobeamManipulation

proxy() - Method in class ome.model.fs.Fileset

proxy() - Method in class ome.model.fs.FilesetEntry

proxy() - Method in class ome.model.fs.FilesetJobLink

proxy() - Method in class ome.model.internal.Link

proxy() - Method in class ome.model.jobs.ImportJob

Deprecated.

proxy() - Method in class ome.model.jobs.IndexingJob

proxy() - Method in class ome.model.jobs.IntegrityCheckJob

proxy() - Method in class ome.model.jobs.JobOriginalFileLink

proxy() - Method in class ome.model.jobs.JobStatus

proxy() - Method in class ome.model.jobs.MetadataImportJob

proxy() - Method in class ome.model.jobs.ParseJob

proxy() - Method in class ome.model.jobs.PixelDataJob

proxy() - Method in class ome.model.jobs.ScriptJob

proxy() - Method in class ome.model.jobs.ThumbnailGenerationJob

proxy() - Method in class ome.model.jobs.UploadJob

proxy() - Method in class ome.model.meta.DBPatch

proxy() - Method in class ome.model.meta.Event

proxy() - Method in class ome.model.meta.EventLog

proxy() - Method in class ome.model.meta.Experimenter

proxy() - Method in class ome.model.meta.ExperimenterGroup

proxy() - Method in class ome.model.meta.ExternalInfo

proxy() - Method in class ome.model.meta.GroupExperimenterMap

proxy() - Method in class ome.model.meta.Namespace

proxy() - Method in class ome.model.meta.Node

proxy() - Method in class ome.model.meta.Session

proxy() - Method in class ome.model.meta.Share

proxy() - Method in class ome.model.meta.ShareMember

proxy() - Method in class ome.model.roi.AffineTransform

proxy() - Method in class ome.model.roi.Ellipse

proxy() - Method in class ome.model.roi.Label

proxy() - Method in class ome.model.roi.Line

proxy() - Method in class ome.model.roi.Mask

proxy() - Method in class ome.model.roi.Path

Deprecated.

proxy() - Method in class ome.model.roi.Point

proxy() - Method in class ome.model.roi.Polygon

proxy() - Method in class ome.model.roi.Polyline

proxy() - Method in class ome.model.roi.Rectangle

proxy() - Method in class ome.model.roi.Roi

proxy() - Method in class ome.model.screen.Plate

proxy() - Method in class ome.model.screen.PlateAcquisition

proxy() - Method in class ome.model.screen.Reagent

proxy() - Method in class ome.model.screen.Screen

proxy() - Method in class ome.model.screen.ScreenPlateLink

proxy() - Method in class ome.model.screen.Well

proxy() - Method in class ome.model.screen.WellReagentLink

proxy() - Method in class ome.model.screen.WellSample

proxy() - Method in class ome.model.stats.StatsInfo

PsqlStrings - Class in ome.util.actions

PUBLIC - Static variable in class ome.model.internal.Permissions

an immutable Permissions instance with all Rights granted.

pulse - Variable in class ome.model.acquisition.Laser

PULSE - Static variable in class ome.model.acquisition.Laser

Pulse - Class in ome.model.enums

Pulse() - Constructor for class ome.model.enums.Pulse

Pulse(Long) - Constructor for class ome.model.enums.Pulse

Pulse(Long, boolean) - Constructor for class ome.model.enums.Pulse

Main constructor.

Pulse(String) - Constructor for class ome.model.enums.Pulse

Pulse.Details - Class in ome.model.enums

pump - Variable in class ome.model.acquisition.Laser

PUMP - Static variable in class ome.model.acquisition.Laser

push(Object) - Method in class ome.util.ContextFilter

putAt(String, Object) - Method in class ome.model.acquisition.Arc

putAt(String, Object) - Method in class ome.model.acquisition.Detector

putAt(String, Object) - Method in class ome.model.acquisition.DetectorSettings

putAt(String, Object) - Method in class ome.model.acquisition.Dichroic

putAt(String, Object) - Method in class ome.model.acquisition.Filament

putAt(String, Object) - Method in class ome.model.acquisition.Filter

putAt(String, Object) - Method in class ome.model.acquisition.FilterSet

putAt(String, Object) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

putAt(String, Object) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

putAt(String, Object) - Method in class ome.model.acquisition.GenericExcitationSource

putAt(String, Object) - Method in class ome.model.acquisition.ImagingEnvironment

putAt(String, Object) - Method in class ome.model.acquisition.Instrument

putAt(String, Object) - Method in class ome.model.acquisition.Laser

putAt(String, Object) - Method in class ome.model.acquisition.LightEmittingDiode

putAt(String, Object) - Method in class ome.model.acquisition.LightPath

putAt(String, Object) - Method in class ome.model.acquisition.LightPathEmissionFilterLink

putAt(String, Object) - Method in class ome.model.acquisition.LightPathExcitationFilterLink

putAt(String, Object) - Method in class ome.model.acquisition.LightSettings

putAt(String, Object) - Method in class ome.model.acquisition.LightSource

putAt(String, Object) - Method in class ome.model.acquisition.Microscope

putAt(String, Object) - Method in class ome.model.acquisition.Objective

putAt(String, Object) - Method in class ome.model.acquisition.ObjectiveSettings

putAt(String, Object) - Method in class ome.model.acquisition.OTF

putAt(String, Object) - Method in class ome.model.acquisition.StageLabel

putAt(String, Object) - Method in class ome.model.acquisition.TransmittanceRange

putAt(String, Object) - Method in class ome.model.annotations.Annotation

putAt(String, Object) - Method in class ome.model.annotations.AnnotationAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.BasicAnnotation

putAt(String, Object) - Method in class ome.model.annotations.BooleanAnnotation

putAt(String, Object) - Method in class ome.model.annotations.ChannelAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.CommentAnnotation

putAt(String, Object) - Method in class ome.model.annotations.DatasetAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.DetectorAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.DichroicAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.DoubleAnnotation

putAt(String, Object) - Method in class ome.model.annotations.ExperimenterAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.FileAnnotation

putAt(String, Object) - Method in class ome.model.annotations.FilesetAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.FilterAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.FolderAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.ImageAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.InstrumentAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.LightPathAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.LightSourceAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.ListAnnotation

putAt(String, Object) - Method in class ome.model.annotations.LongAnnotation

putAt(String, Object) - Method in class ome.model.annotations.MapAnnotation

putAt(String, Object) - Method in class ome.model.annotations.NamespaceAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.NodeAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.NumericAnnotation

putAt(String, Object) - Method in class ome.model.annotations.ObjectiveAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.OriginalFileAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.PlaneInfoAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.PlateAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.ProjectAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.ReagentAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.RoiAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.ScreenAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.SessionAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.ShapeAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.TagAnnotation

putAt(String, Object) - Method in class ome.model.annotations.TermAnnotation

putAt(String, Object) - Method in class ome.model.annotations.TextAnnotation

putAt(String, Object) - Method in class ome.model.annotations.TimestampAnnotation

putAt(String, Object) - Method in class ome.model.annotations.TypeAnnotation

putAt(String, Object) - Method in class ome.model.annotations.WellAnnotationLink

putAt(String, Object) - Method in class ome.model.annotations.XmlAnnotation

putAt(String, Object) - Method in class ome.model.containers.Dataset

putAt(String, Object) - Method in class ome.model.containers.DatasetImageLink

putAt(String, Object) - Method in class ome.model.containers.Folder

putAt(String, Object) - Method in class ome.model.containers.FolderImageLink

putAt(String, Object) - Method in class ome.model.containers.FolderRoiLink

putAt(String, Object) - Method in class ome.model.containers.Project

putAt(String, Object) - Method in class ome.model.containers.ProjectDatasetLink

putAt(String, Object) - Method in class ome.model.core.Channel

putAt(String, Object) - Method in class ome.model.core.Image

putAt(String, Object) - Method in class ome.model.core.LogicalChannel

putAt(String, Object) - Method in class ome.model.core.OriginalFile

putAt(String, Object) - Method in class ome.model.core.Pixels

putAt(String, Object) - Method in class ome.model.core.PixelsOriginalFileMap

putAt(String, Object) - Method in class ome.model.core.PlaneInfo

putAt(String, Object) - Method in class ome.model.display.ChannelBinding

putAt(String, Object) - Method in class ome.model.display.CodomainMapContext

putAt(String, Object) - Method in class ome.model.display.ContrastStretchingContext

putAt(String, Object) - Method in class ome.model.display.PlaneSlicingContext

putAt(String, Object) - Method in class ome.model.display.ProjectionDef

putAt(String, Object) - Method in class ome.model.display.QuantumDef

putAt(String, Object) - Method in class ome.model.display.RenderingDef

putAt(String, Object) - Method in class ome.model.display.ReverseIntensityContext

putAt(String, Object) - Method in class ome.model.display.Thumbnail

putAt(String, Object) - Method in class ome.model.enums.AcquisitionMode

putAt(String, Object) - Method in class ome.model.enums.AdminPrivilege

putAt(String, Object) - Method in class ome.model.enums.ArcType

putAt(String, Object) - Method in class ome.model.enums.Binning

putAt(String, Object) - Method in class ome.model.enums.ChecksumAlgorithm

putAt(String, Object) - Method in class ome.model.enums.ContrastMethod

putAt(String, Object) - Method in class ome.model.enums.Correction

putAt(String, Object) - Method in class ome.model.enums.DetectorType

putAt(String, Object) - Method in class ome.model.enums.DimensionOrder

putAt(String, Object) - Method in class ome.model.enums.EventType

putAt(String, Object) - Method in class ome.model.enums.ExperimentType

putAt(String, Object) - Method in class ome.model.enums.Family

putAt(String, Object) - Method in class ome.model.enums.FilamentType

putAt(String, Object) - Method in class ome.model.enums.FilterType

putAt(String, Object) - Method in class ome.model.enums.Format

putAt(String, Object) - Method in class ome.model.enums.Illumination

putAt(String, Object) - Method in class ome.model.enums.Immersion

putAt(String, Object) - Method in class ome.model.enums.LaserMedium

putAt(String, Object) - Method in class ome.model.enums.LaserType

putAt(String, Object) - Method in class ome.model.enums.Medium

putAt(String, Object) - Method in class ome.model.enums.MicrobeamManipulationType

putAt(String, Object) - Method in class ome.model.enums.MicroscopeType

putAt(String, Object) - Method in class ome.model.enums.PhotometricInterpretation

putAt(String, Object) - Method in class ome.model.enums.PixelsType

putAt(String, Object) - Method in class ome.model.enums.ProjectionAxis

putAt(String, Object) - Method in class ome.model.enums.ProjectionType

putAt(String, Object) - Method in class ome.model.enums.Pulse

putAt(String, Object) - Method in class ome.model.enums.RenderingModel

putAt(String, Object) - Method in class ome.model.experiment.Experiment

putAt(String, Object) - Method in class ome.model.experiment.MicrobeamManipulation

putAt(String, Object) - Method in class ome.model.fs.Fileset

putAt(String, Object) - Method in class ome.model.fs.FilesetEntry

putAt(String, Object) - Method in class ome.model.fs.FilesetJobLink

putAt(String, Object) - Method in class ome.model.internal.Details

putAt(String, Object) - Method in class ome.model.internal.Link

putAt(String, Object) - Method in interface ome.model.IObject

stores a value in this instance.

putAt(String, Object) - Method in class ome.model.jobs.ImportJob

Deprecated.

putAt(String, Object) - Method in class ome.model.jobs.IndexingJob

putAt(String, Object) - Method in class ome.model.jobs.IntegrityCheckJob

putAt(String, Object) - Method in class ome.model.jobs.Job

putAt(String, Object) - Method in class ome.model.jobs.JobOriginalFileLink

putAt(String, Object) - Method in class ome.model.jobs.JobStatus

putAt(String, Object) - Method in class ome.model.jobs.MetadataImportJob

putAt(String, Object) - Method in class ome.model.jobs.ParseJob

putAt(String, Object) - Method in class ome.model.jobs.PixelDataJob

putAt(String, Object) - Method in class ome.model.jobs.ScriptJob

putAt(String, Object) - Method in class ome.model.jobs.ThumbnailGenerationJob

putAt(String, Object) - Method in class ome.model.jobs.UploadJob

putAt(String, Object) - Method in class ome.model.meta.DBPatch

putAt(String, Object) - Method in class ome.model.meta.Event

putAt(String, Object) - Method in class ome.model.meta.EventLog

putAt(String, Object) - Method in class ome.model.meta.Experimenter

putAt(String, Object) - Method in class ome.model.meta.ExperimenterGroup

putAt(String, Object) - Method in class ome.model.meta.ExternalInfo

putAt(String, Object) - Method in class ome.model.meta.GroupExperimenterMap

putAt(String, Object) - Method in class ome.model.meta.Namespace

putAt(String, Object) - Method in class ome.model.meta.Node

putAt(String, Object) - Method in class ome.model.meta.Session

putAt(String, Object) - Method in class ome.model.meta.Share

putAt(String, Object) - Method in class ome.model.meta.ShareMember

putAt(String, Object) - Method in class ome.model.roi.AffineTransform

putAt(String, Object) - Method in class ome.model.roi.Ellipse

putAt(String, Object) - Method in class ome.model.roi.Label

putAt(String, Object) - Method in class ome.model.roi.Line

putAt(String, Object) - Method in class ome.model.roi.Mask

putAt(String, Object) - Method in class ome.model.roi.Path

Deprecated.

putAt(String, Object) - Method in class ome.model.roi.Point

putAt(String, Object) - Method in class ome.model.roi.Polygon

putAt(String, Object) - Method in class ome.model.roi.Polyline

putAt(String, Object) - Method in class ome.model.roi.Rectangle

putAt(String, Object) - Method in class ome.model.roi.Roi

putAt(String, Object) - Method in class ome.model.roi.Shape

putAt(String, Object) - Method in class ome.model.screen.Plate

putAt(String, Object) - Method in class ome.model.screen.PlateAcquisition

putAt(String, Object) - Method in class ome.model.screen.Reagent

putAt(String, Object) - Method in class ome.model.screen.Screen

putAt(String, Object) - Method in class ome.model.screen.ScreenPlateLink

putAt(String, Object) - Method in class ome.model.screen.Well

putAt(String, Object) - Method in class ome.model.screen.WellReagentLink

putAt(String, Object) - Method in class ome.model.screen.WellSample

putAt(String, Object) - Method in class ome.model.stats.StatsInfo

putAt(String, Object) - Method in class ome.util.PermDetails

Q

quantization - Variable in class ome.model.display.RenderingDef

QUANTIZATION - Static variable in class ome.model.display.RenderingDef

QuantumDef - Class in ome.model.display

These filter definitions are used by the security system to eliminate non-readable objects from queries.

QuantumDef() - Constructor for class ome.model.display.QuantumDef

QuantumDef(Long) - Constructor for class ome.model.display.QuantumDef

QuantumDef(Long, boolean) - Constructor for class ome.model.display.QuantumDef

Main constructor.

QuantumDef(Integer, Integer, Integer) - Constructor for class ome.model.display.QuantumDef

QuantumDef.Details - Class in ome.model.display

QueryParameter - Class in ome.parameters

arbitrary query parameter used by ome.api.IQuery.

QueryParameter(String, Class, Object) - Constructor for class ome.parameters.QueryParameter

queryParameters() - Method in class ome.parameters.Parameters

copies all QueryParameters to an array.

R

radiusX - Variable in class ome.model.roi.Ellipse

RADIUSX - Static variable in class ome.model.roi.Ellipse

radiusY - Variable in class ome.model.roi.Ellipse

RADIUSY - Static variable in class ome.model.roi.Ellipse

Rat(long, long) - Static method in class ome.model.units.Conversion

Static helper for creating Conversion.Rat instances.

Rat(Conversion...) - Static method in class ome.model.units.Conversion

Static helper for creating Conversion.Rat instances.

Rat(long, long) - Constructor for class ome.model.units.Conversion.Rat

Rat(Conversion...) - Constructor for class ome.model.units.Conversion.Rat

RdfPrinter - Class in ome.util

walks an object graph producing RDF-like output.

RdfPrinter() - Constructor for class ome.util.RdfPrinter

READ_ONLY - Static variable in class ome.model.internal.Permissions

an immutable Permissions instance with all Permissions.Right.WRITE rights turned off.

ReadOnlyGroupSecurityViolation - Exception in ome.conditions

Extension of GroupSecurityViolation signalling that an admin or group owner has tried to make a modification in a private group OR that the member of a read-only group has tried to do the same.

ReadOnlyGroupSecurityViolation(String) - Constructor for exception ome.conditions.ReadOnlyGroupSecurityViolation

readOutRate - Variable in class ome.model.acquisition.DetectorSettings

READOUTRATE - Static variable in class ome.model.acquisition.DetectorSettings

Reagent - Class in ome.model.screen

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Reagent() - Constructor for class ome.model.screen.Reagent

Reagent(Long) - Constructor for class ome.model.screen.Reagent

Reagent(Long, boolean) - Constructor for class ome.model.screen.Reagent

Main constructor.

Reagent(Screen) - Constructor for class ome.model.screen.Reagent

Reagent.Details - Class in ome.model.screen

ReagentAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ReagentAnnotationLink() - Constructor for class ome.model.annotations.ReagentAnnotationLink

ReagentAnnotationLink(Long) - Constructor for class ome.model.annotations.ReagentAnnotationLink

ReagentAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ReagentAnnotationLink

Main constructor.

ReagentAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ReagentAnnotationLink

ReagentAnnotationLink.Details - Class in ome.model.annotations

reagentIdentifier - Variable in class ome.model.screen.Reagent

REAGENTIDENTIFIER - Static variable in class ome.model.screen.Reagent

reagentLinks - Variable in class ome.model.screen.Well

REAGENTLINKS - Static variable in class ome.model.screen.Well

REAGENTLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Well

reagents - Variable in class ome.model.screen.Screen

REAGENTS - Static variable in class ome.model.screen.Screen

reagentSetDescription - Variable in class ome.model.screen.Screen

REAGENTSETDESCRIPTION - Static variable in class ome.model.screen.Screen

reagentSetIdentifier - Variable in class ome.model.screen.Screen

REAGENTSETIDENTIFIER - Static variable in class ome.model.screen.Screen

Rectangle - Class in ome.model.roi

Rectangle() - Constructor for class ome.model.roi.Rectangle

Rectangle(Long) - Constructor for class ome.model.roi.Rectangle

Rectangle(Long, boolean) - Constructor for class ome.model.roi.Rectangle

Main constructor.

red - Variable in class ome.model.core.Channel

RED - Static variable in class ome.model.core.Channel

red - Variable in class ome.model.display.ChannelBinding

RED - Static variable in class ome.model.display.ChannelBinding

red - Variable in class ome.model.screen.Well

RED - Static variable in class ome.model.screen.Well

ref - Variable in class ome.model.display.Thumbnail

REF - Static variable in class ome.model.display.Thumbnail

reflectiveNewInstance(T) - Static method in class ome.util.ShallowCopy

refractiveIndex - Variable in class ome.model.acquisition.ObjectiveSettings

REFRACTIVEINDEX - Static variable in class ome.model.acquisition.ObjectiveSettings

refreshEventLogFromUpdatedAnnotations() - Method in class ome.util.SqlAction.Impl

refreshEventLogFromUpdatedAnnotations() - Method in interface ome.util.SqlAction

Convert the _reindexing_required table to REINDEX entries in the event log.

relatedTo - Variable in class ome.model.core.Pixels

Deprecated.

RELATEDTO - Static variable in class ome.model.core.Pixels

Deprecated.

releaseSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction

releaseSavepoint(String) - Method in interface ome.util.SqlAction

remove(Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister

remove() - Method in class ome.util.EmptyIterator

removeAnnotationAnnotationLink(AnnotationAnnotationLink) - Method in class ome.model.annotations.Annotation

removes a single element from this set and makes the inverse call on ome.model.annotations.AnnotationAnnotationLink

removeAnnotationAnnotationLink(AnnotationAnnotationLink, boolean) - Method in class ome.model.annotations.Annotation

removes the given AnnotationAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkAnnotation again if loaded.

removeAnnotationAnnotationLinkSet(Collection<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation

use like removeAnnotationAnnotationLink

removeChannel(Channel) - Method in class ome.model.core.LogicalChannel

removes a single element from this set and makes the inverse call on ome.model.core.Channel

removeChannel(Channel) - Method in class ome.model.core.Pixels

removes a single element from this set and makes the inverse call on ome.model.core.Channel

removeChannelAnnotationLink(ChannelAnnotationLink) - Method in class ome.model.core.Channel

removes a single element from this set and makes the inverse call on ome.model.annotations.ChannelAnnotationLink

removeChannelAnnotationLink(ChannelAnnotationLink, boolean) - Method in class ome.model.core.Channel

removes the given ChannelAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkChannel again if loaded.

removeChannelAnnotationLinkSet(Collection<ChannelAnnotationLink>) - Method in class ome.model.core.Channel

use like removeChannelAnnotationLink

removeChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef

removes a single element from this set and makes the inverse call on ome.model.display.ChannelBinding

removeChannelBindingSet(Collection<ChannelBinding>) - Method in class ome.model.display.RenderingDef

use like removeChannelBinding

removeChannelSet(Collection<Channel>) - Method in class ome.model.core.LogicalChannel

use like removeChannel

removeChannelSet(Collection<Channel>) - Method in class ome.model.core.Pixels

use like removeChannel

removeChildFolders(Folder) - Method in class ome.model.containers.Folder

removes a single element from this set and makes the inverse call on ome.model.containers.Folder

removeChildFoldersSet(Collection<Folder>) - Method in class ome.model.containers.Folder

use like removeFolder

removeCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding

removes a single element from this set and makes the inverse call on ome.model.display.CodomainMapContext

removeCodomainMapContextSet(Collection<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding

use like removeCodomainMapContext

removeDatasetAnnotationLink(DatasetAnnotationLink) - Method in class ome.model.containers.Dataset

removes a single element from this set and makes the inverse call on ome.model.annotations.DatasetAnnotationLink

removeDatasetAnnotationLink(DatasetAnnotationLink, boolean) - Method in class ome.model.containers.Dataset

removes the given DatasetAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkDataset again if loaded.

removeDatasetAnnotationLinkSet(Collection<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset

use like removeDatasetAnnotationLink

removeDatasetImageLink(DatasetImageLink) - Method in class ome.model.containers.Dataset

removes a single element from this set and makes the inverse call on ome.model.containers.DatasetImageLink

removeDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.containers.Dataset

removes the given DatasetImageLink from imageLinks, allowing for recursion -- whether or not the removal will call unlinkDataset again if loaded.

removeDatasetImageLink(DatasetImageLink) - Method in class ome.model.core.Image

removes a single element from this set and makes the inverse call on ome.model.containers.DatasetImageLink

removeDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.core.Image

removes the given DatasetImageLink from datasetLinks, allowing for recursion -- whether or not the removal will call unlinkImage again if loaded.

removeDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.containers.Dataset

use like removeDatasetImageLink

removeDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.core.Image

use like removeDatasetImageLink

removeDetector(Detector) - Method in class ome.model.acquisition.Instrument

removes a single element from this set and makes the inverse call on ome.model.acquisition.Detector

removeDetectorAnnotationLink(DetectorAnnotationLink) - Method in class ome.model.acquisition.Detector

removes a single element from this set and makes the inverse call on ome.model.annotations.DetectorAnnotationLink

removeDetectorAnnotationLink(DetectorAnnotationLink, boolean) - Method in class ome.model.acquisition.Detector

removes the given DetectorAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkDetector again if loaded.

removeDetectorAnnotationLinkSet(Collection<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector

use like removeDetectorAnnotationLink

removeDetectorSet(Collection<Detector>) - Method in class ome.model.acquisition.Instrument

use like removeDetector

removeDichroic(Dichroic) - Method in class ome.model.acquisition.Instrument

removes a single element from this set and makes the inverse call on ome.model.acquisition.Dichroic

removeDichroicAnnotationLink(DichroicAnnotationLink) - Method in class ome.model.acquisition.Dichroic

removes a single element from this set and makes the inverse call on ome.model.annotations.DichroicAnnotationLink

removeDichroicAnnotationLink(DichroicAnnotationLink, boolean) - Method in class ome.model.acquisition.Dichroic

removes the given DichroicAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkDichroic again if loaded.

removeDichroicAnnotationLinkSet(Collection<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic

use like removeDichroicAnnotationLink

removeDichroicSet(Collection<Dichroic>) - Method in class ome.model.acquisition.Instrument

use like removeDichroic

RemovedSessionException - Exception in ome.conditions

Client attempted to access a session which has either expired or been closed manually.

RemovedSessionException(String) - Constructor for exception ome.conditions.RemovedSessionException

removeEvent(Event) - Method in class ome.model.meta.Session

removes a single element from this set and makes the inverse call on ome.model.meta.Event

removeEventLog(EventLog) - Method in class ome.model.meta.Event

removes a single element from this set and makes the inverse call on ome.model.meta.EventLog

removeEventLogSet(Collection<EventLog>) - Method in class ome.model.meta.Event

use like removeEventLog

removeEventSet(Collection<Event>) - Method in class ome.model.meta.Session

use like removeEvent

removeExperimenterAnnotationLink(ExperimenterAnnotationLink) - Method in class ome.model.meta.Experimenter

removes a single element from this set and makes the inverse call on ome.model.annotations.ExperimenterAnnotationLink

removeExperimenterAnnotationLink(ExperimenterAnnotationLink, boolean) - Method in class ome.model.meta.Experimenter

removes the given ExperimenterAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkExperimenter again if loaded.

removeExperimenterAnnotationLinkSet(Collection<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter

use like removeExperimenterAnnotationLink

removeExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink) - Method in class ome.model.meta.ExperimenterGroup

removes a single element from this set and makes the inverse call on ome.model.annotations.ExperimenterGroupAnnotationLink

removeExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink, boolean) - Method in class ome.model.meta.ExperimenterGroup

removes the given ExperimenterGroupAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkExperimenterGroup again if loaded.

removeExperimenterGroupAnnotationLinkSet(Collection<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup

use like removeExperimenterGroupAnnotationLink

removeFilesetAnnotationLink(FilesetAnnotationLink) - Method in class ome.model.fs.Fileset

removes a single element from this set and makes the inverse call on ome.model.annotations.FilesetAnnotationLink

removeFilesetAnnotationLink(FilesetAnnotationLink, boolean) - Method in class ome.model.fs.Fileset

removes the given FilesetAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFileset again if loaded.

removeFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset

use like removeFilesetAnnotationLink

removeFilesetEntry(FilesetEntry) - Method in class ome.model.core.OriginalFile

removes a single element from this set and makes the inverse call on ome.model.fs.FilesetEntry

removeFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset

removes a single element from this set and makes the inverse call on ome.model.fs.FilesetEntry

removeFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.core.OriginalFile

use like removeFilesetEntry

removeFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.fs.Fileset

use like removeFilesetEntry

removeFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset

removes a single element from this set and makes the inverse call on ome.model.fs.FilesetJobLink

removeFilesetJobLink(FilesetJobLink, boolean) - Method in class ome.model.fs.Fileset

removes the given FilesetJobLink from jobLinks, allowing for recursion -- whether or not the removal will call unlinkFileset again if loaded.

removeFilesetJobLinkSet(Collection<FilesetJobLink>) - Method in class ome.model.fs.Fileset

use like removeFilesetJobLink

removeFilter(Filter) - Method in class ome.model.acquisition.Instrument

removes a single element from this set and makes the inverse call on ome.model.acquisition.Filter

removeFilterAnnotationLink(FilterAnnotationLink) - Method in class ome.model.acquisition.Filter

removes a single element from this set and makes the inverse call on ome.model.annotations.FilterAnnotationLink

removeFilterAnnotationLink(FilterAnnotationLink, boolean) - Method in class ome.model.acquisition.Filter

removes the given FilterAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFilter again if loaded.

removeFilterAnnotationLinkSet(Collection<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter

use like removeFilterAnnotationLink

removeFilterSet(Collection<Filter>) - Method in class ome.model.acquisition.Instrument

use like removeFilter

removeFilterSet(FilterSet) - Method in class ome.model.acquisition.Instrument

removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSet

removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.Filter

removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetEmissionFilterLink

removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.Filter

removes the given FilterSetEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilter again if loaded.

removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.FilterSet

removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetEmissionFilterLink

removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet

removes the given FilterSetEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilterSet again if loaded.

removeFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter

use like removeFilterSetEmissionFilterLink

removeFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet

use like removeFilterSetEmissionFilterLink

removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.Filter

removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetExcitationFilterLink

removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.Filter

removes the given FilterSetExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilter again if loaded.

removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.FilterSet

removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetExcitationFilterLink

removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet

removes the given FilterSetExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilterSet again if loaded.

removeFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter

use like removeFilterSetExcitationFilterLink

removeFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet

use like removeFilterSetExcitationFilterLink

removeFilterSetSet(Collection<FilterSet>) - Method in class ome.model.acquisition.Instrument

use like removeFilterSet

removeFolderAnnotationLink(FolderAnnotationLink) - Method in class ome.model.containers.Folder

removes a single element from this set and makes the inverse call on ome.model.annotations.FolderAnnotationLink

removeFolderAnnotationLink(FolderAnnotationLink, boolean) - Method in class ome.model.containers.Folder

removes the given FolderAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFolder again if loaded.

removeFolderAnnotationLinkSet(Collection<FolderAnnotationLink>) - Method in class ome.model.containers.Folder

use like removeFolderAnnotationLink

removeFolderImageLink(FolderImageLink) - Method in class ome.model.containers.Folder

removes a single element from this set and makes the inverse call on ome.model.containers.FolderImageLink

removeFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.containers.Folder

removes the given FolderImageLink from imageLinks, allowing for recursion -- whether or not the removal will call unlinkFolder again if loaded.

removeFolderImageLink(FolderImageLink) - Method in class ome.model.core.Image

removes a single element from this set and makes the inverse call on ome.model.containers.FolderImageLink

removeFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.core.Image

removes the given FolderImageLink from folderLinks, allowing for recursion -- whether or not the removal will call unlinkImage again if loaded.

removeFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.containers.Folder

use like removeFolderImageLink

removeFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.core.Image

use like removeFolderImageLink

removeFolderRoiLink(FolderRoiLink) - Method in class ome.model.containers.Folder

removes a single element from this set and makes the inverse call on ome.model.containers.FolderRoiLink

removeFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.containers.Folder

removes the given FolderRoiLink from roiLinks, allowing for recursion -- whether or not the removal will call unlinkFolder again if loaded.

removeFolderRoiLink(FolderRoiLink) - Method in class ome.model.roi.Roi

removes a single element from this set and makes the inverse call on ome.model.containers.FolderRoiLink

removeFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.roi.Roi

removes the given FolderRoiLink from folderLinks, allowing for recursion -- whether or not the removal will call unlinkRoi again if loaded.

removeFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.containers.Folder

use like removeFolderRoiLink

removeFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.roi.Roi

use like removeFolderRoiLink

removeGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter

removes a single element from this set and makes the inverse call on ome.model.meta.GroupExperimenterMap

removeGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.Experimenter

removes the given GroupExperimenterMap from groupExperimenterMap, allowing for recursion -- whether or not the removal will call unlinkExperimenter again if loaded.

removeGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.ExperimenterGroup

removes a single element from this set and makes the inverse call on ome.model.meta.GroupExperimenterMap

removeGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.ExperimenterGroup

removes the given GroupExperimenterMap from groupExperimenterMap, allowing for recursion -- whether or not the removal will call unlinkExperimenterGroup again if loaded.

removeGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter

use like removeGroupExperimenterMap

removeGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup

use like removeGroupExperimenterMap

removeImage(Image) - Method in class ome.model.fs.Fileset

removes a single element from this set and makes the inverse call on ome.model.core.Image

removeImageAnnotationLink(ImageAnnotationLink) - Method in class ome.model.core.Image

removes a single element from this set and makes the inverse call on ome.model.annotations.ImageAnnotationLink

removeImageAnnotationLink(ImageAnnotationLink, boolean) - Method in class ome.model.core.Image

removes the given ImageAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkImage again if loaded.

removeImageAnnotationLinkSet(Collection<ImageAnnotationLink>) - Method in class ome.model.core.Image

use like removeImageAnnotationLink

removeImageSet(Collection<Image>) - Method in class ome.model.fs.Fileset

use like removeImage

removeInstrumentAnnotationLink(InstrumentAnnotationLink) - Method in class ome.model.acquisition.Instrument

removes a single element from this set and makes the inverse call on ome.model.annotations.InstrumentAnnotationLink

removeInstrumentAnnotationLink(InstrumentAnnotationLink, boolean) - Method in class ome.model.acquisition.Instrument

removes the given InstrumentAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkInstrument again if loaded.

removeInstrumentAnnotationLinkSet(Collection<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument

use like removeInstrumentAnnotationLink

removeJobOriginalFileLink(JobOriginalFileLink) - Method in class ome.model.jobs.Job

removes a single element from this set and makes the inverse call on ome.model.jobs.JobOriginalFileLink

removeJobOriginalFileLink(JobOriginalFileLink, boolean) - Method in class ome.model.jobs.Job

removes the given JobOriginalFileLink from originalFileLinks, allowing for recursion -- whether or not the removal will call unlinkJob again if loaded.

removeJobOriginalFileLinkSet(Collection<JobOriginalFileLink>) - Method in class ome.model.jobs.Job

use like removeJobOriginalFileLink

removeLightPathAnnotationLink(LightPathAnnotationLink) - Method in class ome.model.acquisition.LightPath

removes a single element from this set and makes the inverse call on ome.model.annotations.LightPathAnnotationLink

removeLightPathAnnotationLink(LightPathAnnotationLink, boolean) - Method in class ome.model.acquisition.LightPath

removes the given LightPathAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.

removeLightPathAnnotationLinkSet(Collection<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath

use like removeLightPathAnnotationLink

removeLightPathEmissionFilterLink(LightPathEmissionFilterLink) - Method in class ome.model.acquisition.LightPath

removes a single element from this set and makes the inverse call on ome.model.acquisition.LightPathEmissionFilterLink

removeLightPathEmissionFilterLink(LightPathEmissionFilterLink, boolean) - Method in class ome.model.acquisition.LightPath

removes the given LightPathEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.

removeLightPathEmissionFilterLinkSet(Collection<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath

use like removeLightPathEmissionFilterLink

removeLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath

removes a single element from this set and makes the inverse call on ome.model.acquisition.LightPathExcitationFilterLink

removeLightPathExcitationFilterLink(LightPathExcitationFilterLink, boolean) - Method in class ome.model.acquisition.LightPath

removes the given LightPathExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.

removeLightPathExcitationFilterLinkSet(Collection<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath

use like removeLightPathExcitationFilterLink

removeLightSettings(LightSettings) - Method in class ome.model.experiment.MicrobeamManipulation

removes a single element from this set and makes the inverse call on ome.model.acquisition.LightSettings

removeLightSettingsSet(Collection<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation

use like removeLightSettings

removeLightSource(LightSource) - Method in class ome.model.acquisition.Instrument

removes a single element from this set and makes the inverse call on ome.model.acquisition.LightSource

removeLightSourceAnnotationLink(LightSourceAnnotationLink) - Method in class ome.model.acquisition.LightSource

removes a single element from this set and makes the inverse call on ome.model.annotations.LightSourceAnnotationLink

removeLightSourceAnnotationLink(LightSourceAnnotationLink, boolean) - Method in class ome.model.acquisition.LightSource

removes the given LightSourceAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkLightSource again if loaded.

removeLightSourceAnnotationLinkSet(Collection<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource

use like removeLightSourceAnnotationLink

removeLightSourceSet(Collection<LightSource>) - Method in class ome.model.acquisition.Instrument

use like removeLightSource

removeMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.experiment.Experiment

removes a single element from this set and makes the inverse call on ome.model.experiment.MicrobeamManipulation

removeMicrobeamManipulationSet(Collection<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment

use like removeMicrobeamManipulation

removeNamespaceAnnotationLink(NamespaceAnnotationLink) - Method in class ome.model.meta.Namespace

removes a single element from this set and makes the inverse call on ome.model.annotations.NamespaceAnnotationLink

removeNamespaceAnnotationLink(NamespaceAnnotationLink, boolean) - Method in class ome.model.meta.Namespace

removes the given NamespaceAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkNamespace again if loaded.

removeNamespaceAnnotationLinkSet(Collection<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace

use like removeNamespaceAnnotationLink

removeNodeAnnotationLink(NodeAnnotationLink) - Method in class ome.model.meta.Node

removes a single element from this set and makes the inverse call on ome.model.annotations.NodeAnnotationLink

removeNodeAnnotationLink(NodeAnnotationLink, boolean) - Method in class ome.model.meta.Node

removes the given NodeAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkNode again if loaded.

removeNodeAnnotationLinkSet(Collection<NodeAnnotationLink>) - Method in class ome.model.meta.Node

use like removeNodeAnnotationLink

removeObjective(Objective) - Method in class ome.model.acquisition.Instrument

removes a single element from this set and makes the inverse call on ome.model.acquisition.Objective

removeObjectiveAnnotationLink(ObjectiveAnnotationLink) - Method in class ome.model.acquisition.Objective

removes a single element from this set and makes the inverse call on ome.model.annotations.ObjectiveAnnotationLink

removeObjectiveAnnotationLink(ObjectiveAnnotationLink, boolean) - Method in class ome.model.acquisition.Objective

removes the given ObjectiveAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkObjective again if loaded.

removeObjectiveAnnotationLinkSet(Collection<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective

use like removeObjectiveAnnotationLink

removeObjectiveSet(Collection<Objective>) - Method in class ome.model.acquisition.Instrument

use like removeObjective

removeOriginalFileAnnotationLink(OriginalFileAnnotationLink) - Method in class ome.model.core.OriginalFile

removes a single element from this set and makes the inverse call on ome.model.annotations.OriginalFileAnnotationLink

removeOriginalFileAnnotationLink(OriginalFileAnnotationLink, boolean) - Method in class ome.model.core.OriginalFile

removes the given OriginalFileAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkOriginalFile again if loaded.

removeOriginalFileAnnotationLinkSet(Collection<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile

use like removeOriginalFileAnnotationLink

removeOTF(OTF) - Method in class ome.model.acquisition.Instrument

removes a single element from this set and makes the inverse call on ome.model.acquisition.OTF

removeOTFSet(Collection<OTF>) - Method in class ome.model.acquisition.Instrument

use like removeOTF

removePassword(Long) - Method in class ome.util.actions.PostgresSqlAction

removePassword(Long) - Method in interface ome.util.SqlAction

removePixels(Pixels) - Method in class ome.model.core.Image

removes a single element from this set and makes the inverse call on ome.model.core.Pixels

removePixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.OriginalFile

removes a single element from this set and makes the inverse call on ome.model.core.PixelsOriginalFileMap

removePixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.OriginalFile

removes the given PixelsOriginalFileMap from pixelsFileMaps, allowing for recursion -- whether or not the removal will call unlinkOriginalFile again if loaded.

removePixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.Pixels

removes a single element from this set and makes the inverse call on ome.model.core.PixelsOriginalFileMap

removePixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.Pixels

removes the given PixelsOriginalFileMap from pixelsFileMaps, allowing for recursion -- whether or not the removal will call unlinkPixels again if loaded.

removePixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile

use like removePixelsOriginalFileMap

removePixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels

use like removePixelsOriginalFileMap

removePixelsSet(Collection<Pixels>) - Method in class ome.model.core.Image

use like removePixels

removePlaneInfo(PlaneInfo) - Method in class ome.model.core.Pixels

removes a single element from this set and makes the inverse call on ome.model.core.PlaneInfo

removePlaneInfoAnnotationLink(PlaneInfoAnnotationLink) - Method in class ome.model.core.PlaneInfo

removes a single element from this set and makes the inverse call on ome.model.annotations.PlaneInfoAnnotationLink

removePlaneInfoAnnotationLink(PlaneInfoAnnotationLink, boolean) - Method in class ome.model.core.PlaneInfo

removes the given PlaneInfoAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlaneInfo again if loaded.

removePlaneInfoAnnotationLinkSet(Collection<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo

use like removePlaneInfoAnnotationLink

removePlaneInfoSet(Collection<PlaneInfo>) - Method in class ome.model.core.Pixels

use like removePlaneInfo

removePlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.Plate

removes a single element from this set and makes the inverse call on ome.model.screen.PlateAcquisition

removePlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink) - Method in class ome.model.screen.PlateAcquisition

removes a single element from this set and makes the inverse call on ome.model.annotations.PlateAcquisitionAnnotationLink

removePlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink, boolean) - Method in class ome.model.screen.PlateAcquisition

removes the given PlateAcquisitionAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlateAcquisition again if loaded.

removePlateAcquisitionAnnotationLinkSet(Collection<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition

use like removePlateAcquisitionAnnotationLink

removePlateAcquisitionSet(Collection<PlateAcquisition>) - Method in class ome.model.screen.Plate

use like removePlateAcquisition

removePlateAnnotationLink(PlateAnnotationLink) - Method in class ome.model.screen.Plate

removes a single element from this set and makes the inverse call on ome.model.annotations.PlateAnnotationLink

removePlateAnnotationLink(PlateAnnotationLink, boolean) - Method in class ome.model.screen.Plate

removes the given PlateAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.

removePlateAnnotationLinkSet(Collection<PlateAnnotationLink>) - Method in class ome.model.screen.Plate

use like removePlateAnnotationLink

removeProjectAnnotationLink(ProjectAnnotationLink) - Method in class ome.model.containers.Project

removes a single element from this set and makes the inverse call on ome.model.annotations.ProjectAnnotationLink

removeProjectAnnotationLink(ProjectAnnotationLink, boolean) - Method in class ome.model.containers.Project

removes the given ProjectAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkProject again if loaded.

removeProjectAnnotationLinkSet(Collection<ProjectAnnotationLink>) - Method in class ome.model.containers.Project

use like removeProjectAnnotationLink

removeProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Dataset

removes a single element from this set and makes the inverse call on ome.model.containers.ProjectDatasetLink

removeProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Dataset

removes the given ProjectDatasetLink from projectLinks, allowing for recursion -- whether or not the removal will call unlinkDataset again if loaded.

removeProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Project

removes a single element from this set and makes the inverse call on ome.model.containers.ProjectDatasetLink

removeProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Project

removes the given ProjectDatasetLink from datasetLinks, allowing for recursion -- whether or not the removal will call unlinkProject again if loaded.

removeProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset

use like removeProjectDatasetLink

removeProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Project

use like removeProjectDatasetLink

removeProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef

removes a single element from this set and makes the inverse call on ome.model.display.ProjectionDef

removeProjectionDefSet(Collection<ProjectionDef>) - Method in class ome.model.display.RenderingDef

use like removeProjectionDef

removeReagent(Reagent) - Method in class ome.model.screen.Screen

removes a single element from this set and makes the inverse call on ome.model.screen.Reagent

removeReagentAnnotationLink(ReagentAnnotationLink) - Method in class ome.model.screen.Reagent

removes a single element from this set and makes the inverse call on ome.model.annotations.ReagentAnnotationLink

removeReagentAnnotationLink(ReagentAnnotationLink, boolean) - Method in class ome.model.screen.Reagent

removes the given ReagentAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkReagent again if loaded.

removeReagentAnnotationLinkSet(Collection<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent

use like removeReagentAnnotationLink

removeReagentSet(Collection<Reagent>) - Method in class ome.model.screen.Screen

use like removeReagent

removeRenderingDef(RenderingDef) - Method in class ome.model.core.Pixels

removes a single element from this set and makes the inverse call on ome.model.display.RenderingDef

removeRenderingDefSet(Collection<RenderingDef>) - Method in class ome.model.core.Pixels

use like removeRenderingDef

removeRoi(Roi) - Method in class ome.model.core.Image

removes a single element from this set and makes the inverse call on ome.model.roi.Roi

removeRoiAnnotationLink(RoiAnnotationLink) - Method in class ome.model.roi.Roi

removes a single element from this set and makes the inverse call on ome.model.annotations.RoiAnnotationLink

removeRoiAnnotationLink(RoiAnnotationLink, boolean) - Method in class ome.model.roi.Roi

removes the given RoiAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkRoi again if loaded.

removeRoiAnnotationLinkSet(Collection<RoiAnnotationLink>) - Method in class ome.model.roi.Roi

use like removeRoiAnnotationLink

removeRoiSet(Collection<Roi>) - Method in class ome.model.core.Image

use like removeRoi

removeScreenAnnotationLink(ScreenAnnotationLink) - Method in class ome.model.screen.Screen

removes a single element from this set and makes the inverse call on ome.model.annotations.ScreenAnnotationLink

removeScreenAnnotationLink(ScreenAnnotationLink, boolean) - Method in class ome.model.screen.Screen

removes the given ScreenAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkScreen again if loaded.

removeScreenAnnotationLinkSet(Collection<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen

use like removeScreenAnnotationLink

removeScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Plate

removes a single element from this set and makes the inverse call on ome.model.screen.ScreenPlateLink

removeScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Plate

removes the given ScreenPlateLink from screenLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.

removeScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Screen

removes a single element from this set and makes the inverse call on ome.model.screen.ScreenPlateLink

removeScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Screen

removes the given ScreenPlateLink from plateLinks, allowing for recursion -- whether or not the removal will call unlinkScreen again if loaded.

removeScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Plate

use like removeScreenPlateLink

removeScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Screen

use like removeScreenPlateLink

removeSession(Session) - Method in class ome.model.meta.Node

removes a single element from this set and makes the inverse call on ome.model.meta.Session

removeSessionAnnotationLink(SessionAnnotationLink) - Method in class ome.model.meta.Session

removes a single element from this set and makes the inverse call on ome.model.annotations.SessionAnnotationLink

removeSessionAnnotationLink(SessionAnnotationLink, boolean) - Method in class ome.model.meta.Session

removes the given SessionAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkSession again if loaded.

removeSessionAnnotationLinkSet(Collection<SessionAnnotationLink>) - Method in class ome.model.meta.Session

use like removeSessionAnnotationLink

removeSessionSet(Collection<Session>) - Method in class ome.model.meta.Node

use like removeSession

removeShape(Shape) - Method in class ome.model.roi.Roi

removes a single element from this set and makes the inverse call on ome.model.roi.Shape

removeShapeAnnotationLink(ShapeAnnotationLink) - Method in class ome.model.roi.Shape

removes a single element from this set and makes the inverse call on ome.model.annotations.ShapeAnnotationLink

removeShapeAnnotationLink(ShapeAnnotationLink, boolean) - Method in class ome.model.roi.Shape

removes the given ShapeAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkShape again if loaded.

removeShapeAnnotationLinkSet(Collection<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape

use like removeShapeAnnotationLink

removeShapeSet(Collection<Shape>) - Method in class ome.model.roi.Roi

use like removeShape

removeThumbnail(Thumbnail) - Method in class ome.model.core.Pixels

removes a single element from this set and makes the inverse call on ome.model.display.Thumbnail

removeThumbnailSet(Collection<Thumbnail>) - Method in class ome.model.core.Pixels

use like removeThumbnail

removeWell(Well) - Method in class ome.model.screen.Plate

removes a single element from this set and makes the inverse call on ome.model.screen.Well

removeWellAnnotationLink(WellAnnotationLink) - Method in class ome.model.screen.Well

removes a single element from this set and makes the inverse call on ome.model.annotations.WellAnnotationLink

removeWellAnnotationLink(WellAnnotationLink, boolean) - Method in class ome.model.screen.Well

removes the given WellAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkWell again if loaded.

removeWellAnnotationLinkSet(Collection<WellAnnotationLink>) - Method in class ome.model.screen.Well

use like removeWellAnnotationLink

removeWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Reagent

removes a single element from this set and makes the inverse call on ome.model.screen.WellReagentLink

removeWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Reagent

removes the given WellReagentLink from wellLinks, allowing for recursion -- whether or not the removal will call unlinkReagent again if loaded.

removeWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Well

removes a single element from this set and makes the inverse call on ome.model.screen.WellReagentLink

removeWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Well

removes the given WellReagentLink from reagentLinks, allowing for recursion -- whether or not the removal will call unlinkWell again if loaded.

removeWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Reagent

use like removeWellReagentLink

removeWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Well

use like removeWellReagentLink

removeWellSample(WellSample) - Method in class ome.model.core.Image

removes a single element from this set and makes the inverse call on ome.model.screen.WellSample

removeWellSample(WellSample) - Method in class ome.model.screen.PlateAcquisition

removes a single element from this set and makes the inverse call on ome.model.screen.WellSample

removeWellSample(WellSample) - Method in class ome.model.screen.Well

removes a single element from this set and makes the inverse call on ome.model.screen.WellSample

removeWellSampleSet(Collection<WellSample>) - Method in class ome.model.core.Image

use like removeWellSample

removeWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.PlateAcquisition

use like removeWellSample

removeWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.Well

use like removeWellSample

removeWellSet(Collection<Well>) - Method in class ome.model.screen.Plate

use like removeWell

renderingDef - Variable in class ome.model.display.ChannelBinding

RENDERINGDEF - Static variable in class ome.model.display.ChannelBinding

renderingDef - Variable in class ome.model.display.ProjectionDef

RENDERINGDEF - Static variable in class ome.model.display.ProjectionDef

RenderingDef - Class in ome.model.display

These filter definitions are used by the security system to eliminate non-readable objects from queries.

RenderingDef() - Constructor for class ome.model.display.RenderingDef

RenderingDef(Long) - Constructor for class ome.model.display.RenderingDef

RenderingDef(Long, boolean) - Constructor for class ome.model.display.RenderingDef

Main constructor.

RenderingDef(Pixels, Integer, Integer, RenderingModel, QuantumDef) - Constructor for class ome.model.display.RenderingDef

RenderingDef.Details - Class in ome.model.display

RenderingModel - Class in ome.model.enums

RenderingModel() - Constructor for class ome.model.enums.RenderingModel

RenderingModel(Long) - Constructor for class ome.model.enums.RenderingModel

RenderingModel(Long, boolean) - Constructor for class ome.model.enums.RenderingModel

Main constructor.

RenderingModel(String) - Constructor for class ome.model.enums.RenderingModel

RenderingModel.Details - Class in ome.model.enums

repetitionRate - Variable in class ome.model.acquisition.Laser

REPETITIONRATE - Static variable in class ome.model.acquisition.Laser

replace(Object, Object, Object) - Method in class ome.model.units.GenericEnumType

repo - Variable in class ome.model.core.OriginalFile

REPO - Static variable in class ome.model.core.OriginalFile

repo - Variable in class ome.util.SqlAction.DeleteLog

repoFile(long) - Method in class ome.util.actions.PostgresSqlAction

repoFile(long) - Method in interface ome.util.SqlAction

repoScriptCount(String, Set<String>) - Method in class ome.util.SqlAction.Impl

repoScriptCount(String, Set<String>) - Method in interface ome.util.SqlAction

reset() - Method in class ome.util.Counter

Reset this counter to zero.

ResourceError - Exception in ome.conditions

Represents a incorrectible/unforseeable event within the server that lead to a failure of a process.

ResourceError(String) - Constructor for exception ome.conditions.ResourceError

result - Variable in exception ome.model.units.BigResult

retrieve(String) - Method in class ome.model.acquisition.Arc

retrieve(String) - Method in class ome.model.acquisition.Detector

retrieve(String) - Method in class ome.model.acquisition.DetectorSettings

retrieve(String) - Method in class ome.model.acquisition.Dichroic

retrieve(String) - Method in class ome.model.acquisition.Filament

retrieve(String) - Method in class ome.model.acquisition.Filter

retrieve(String) - Method in class ome.model.acquisition.FilterSet

retrieve(String) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

retrieve(String) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

retrieve(String) - Method in class ome.model.acquisition.GenericExcitationSource

retrieve(String) - Method in class ome.model.acquisition.ImagingEnvironment

retrieve(String) - Method in class ome.model.acquisition.Instrument

retrieve(String) - Method in class ome.model.acquisition.Laser

retrieve(String) - Method in class ome.model.acquisition.LightEmittingDiode

retrieve(String) - Method in class ome.model.acquisition.LightPath

retrieve(String) - Method in class ome.model.acquisition.LightPathEmissionFilterLink

retrieve(String) - Method in class ome.model.acquisition.LightPathExcitationFilterLink

retrieve(String) - Method in class ome.model.acquisition.LightSettings

retrieve(String) - Method in class ome.model.acquisition.LightSource

retrieve(String) - Method in class ome.model.acquisition.Microscope

retrieve(String) - Method in class ome.model.acquisition.Objective

retrieve(String) - Method in class ome.model.acquisition.ObjectiveSettings

retrieve(String) - Method in class ome.model.acquisition.OTF

retrieve(String) - Method in class ome.model.acquisition.StageLabel

retrieve(String) - Method in class ome.model.acquisition.TransmittanceRange

retrieve(String) - Method in class ome.model.annotations.Annotation

retrieve(String) - Method in class ome.model.annotations.AnnotationAnnotationLink

retrieve(String) - Method in class ome.model.annotations.BasicAnnotation

retrieve(String) - Method in class ome.model.annotations.BooleanAnnotation

retrieve(String) - Method in class ome.model.annotations.ChannelAnnotationLink

retrieve(String) - Method in class ome.model.annotations.CommentAnnotation

retrieve(String) - Method in class ome.model.annotations.DatasetAnnotationLink

retrieve(String) - Method in class ome.model.annotations.DetectorAnnotationLink

retrieve(String) - Method in class ome.model.annotations.DichroicAnnotationLink

retrieve(String) - Method in class ome.model.annotations.DoubleAnnotation

retrieve(String) - Method in class ome.model.annotations.ExperimenterAnnotationLink

retrieve(String) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

retrieve(String) - Method in class ome.model.annotations.FileAnnotation

retrieve(String) - Method in class ome.model.annotations.FilesetAnnotationLink

retrieve(String) - Method in class ome.model.annotations.FilterAnnotationLink

retrieve(String) - Method in class ome.model.annotations.FolderAnnotationLink

retrieve(String) - Method in class ome.model.annotations.ImageAnnotationLink

retrieve(String) - Method in class ome.model.annotations.InstrumentAnnotationLink

retrieve(String) - Method in class ome.model.annotations.LightPathAnnotationLink

retrieve(String) - Method in class ome.model.annotations.LightSourceAnnotationLink

retrieve(String) - Method in class ome.model.annotations.ListAnnotation

retrieve(String) - Method in class ome.model.annotations.LongAnnotation

retrieve(String) - Method in class ome.model.annotations.MapAnnotation

retrieve(String) - Method in class ome.model.annotations.NamespaceAnnotationLink

retrieve(String) - Method in class ome.model.annotations.NodeAnnotationLink

retrieve(String) - Method in class ome.model.annotations.NumericAnnotation

retrieve(String) - Method in class ome.model.annotations.ObjectiveAnnotationLink

retrieve(String) - Method in class ome.model.annotations.OriginalFileAnnotationLink

retrieve(String) - Method in class ome.model.annotations.PlaneInfoAnnotationLink

retrieve(String) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

retrieve(String) - Method in class ome.model.annotations.PlateAnnotationLink

retrieve(String) - Method in class ome.model.annotations.ProjectAnnotationLink

retrieve(String) - Method in class ome.model.annotations.ReagentAnnotationLink

retrieve(String) - Method in class ome.model.annotations.RoiAnnotationLink

retrieve(String) - Method in class ome.model.annotations.ScreenAnnotationLink

retrieve(String) - Method in class ome.model.annotations.SessionAnnotationLink

retrieve(String) - Method in class ome.model.annotations.ShapeAnnotationLink

retrieve(String) - Method in class ome.model.annotations.TagAnnotation

retrieve(String) - Method in class ome.model.annotations.TermAnnotation

retrieve(String) - Method in class ome.model.annotations.TextAnnotation

retrieve(String) - Method in class ome.model.annotations.TimestampAnnotation

retrieve(String) - Method in class ome.model.annotations.TypeAnnotation

retrieve(String) - Method in class ome.model.annotations.WellAnnotationLink

retrieve(String) - Method in class ome.model.annotations.XmlAnnotation

retrieve(String) - Method in class ome.model.containers.Dataset

retrieve(String) - Method in class ome.model.containers.DatasetImageLink

retrieve(String) - Method in class ome.model.containers.Folder

retrieve(String) - Method in class ome.model.containers.FolderImageLink

retrieve(String) - Method in class ome.model.containers.FolderRoiLink

retrieve(String) - Method in class ome.model.containers.Project

retrieve(String) - Method in class ome.model.containers.ProjectDatasetLink

retrieve(String) - Method in class ome.model.core.Channel

retrieve(String) - Method in class ome.model.core.Image

retrieve(String) - Method in class ome.model.core.LogicalChannel

retrieve(String) - Method in class ome.model.core.OriginalFile

retrieve(String) - Method in class ome.model.core.Pixels

retrieve(String) - Method in class ome.model.core.PixelsOriginalFileMap

retrieve(String) - Method in class ome.model.core.PlaneInfo

retrieve(String) - Method in class ome.model.display.ChannelBinding

retrieve(String) - Method in class ome.model.display.CodomainMapContext

retrieve(String) - Method in class ome.model.display.ContrastStretchingContext

retrieve(String) - Method in class ome.model.display.PlaneSlicingContext

retrieve(String) - Method in class ome.model.display.ProjectionDef

retrieve(String) - Method in class ome.model.display.QuantumDef

retrieve(String) - Method in class ome.model.display.RenderingDef

retrieve(String) - Method in class ome.model.display.ReverseIntensityContext

retrieve(String) - Method in class ome.model.display.Thumbnail

retrieve(String) - Method in class ome.model.enums.AcquisitionMode

retrieve(String) - Method in class ome.model.enums.AdminPrivilege

retrieve(String) - Method in class ome.model.enums.ArcType

retrieve(String) - Method in class ome.model.enums.Binning

retrieve(String) - Method in class ome.model.enums.ChecksumAlgorithm

retrieve(String) - Method in class ome.model.enums.ContrastMethod

retrieve(String) - Method in class ome.model.enums.Correction

retrieve(String) - Method in class ome.model.enums.DetectorType

retrieve(String) - Method in class ome.model.enums.DimensionOrder

retrieve(String) - Method in class ome.model.enums.EventType

retrieve(String) - Method in class ome.model.enums.ExperimentType

retrieve(String) - Method in class ome.model.enums.Family

retrieve(String) - Method in class ome.model.enums.FilamentType

retrieve(String) - Method in class ome.model.enums.FilterType

retrieve(String) - Method in class ome.model.enums.Format

retrieve(String) - Method in class ome.model.enums.Illumination

retrieve(String) - Method in class ome.model.enums.Immersion

retrieve(String) - Method in class ome.model.enums.LaserMedium

retrieve(String) - Method in class ome.model.enums.LaserType

retrieve(String) - Method in class ome.model.enums.Medium

retrieve(String) - Method in class ome.model.enums.MicrobeamManipulationType

retrieve(String) - Method in class ome.model.enums.MicroscopeType

retrieve(String) - Method in class ome.model.enums.PhotometricInterpretation

retrieve(String) - Method in class ome.model.enums.PixelsType

retrieve(String) - Method in class ome.model.enums.ProjectionAxis

retrieve(String) - Method in class ome.model.enums.ProjectionType

retrieve(String) - Method in class ome.model.enums.Pulse

retrieve(String) - Method in class ome.model.enums.RenderingModel

retrieve(String) - Method in class ome.model.experiment.Experiment

retrieve(String) - Method in class ome.model.experiment.MicrobeamManipulation

retrieve(String) - Method in class ome.model.fs.Fileset

retrieve(String) - Method in class ome.model.fs.FilesetEntry

retrieve(String) - Method in class ome.model.fs.FilesetJobLink

retrieve(String) - Method in class ome.model.internal.Details

retrieve(String) - Method in class ome.model.internal.Link

retrieve(String) - Method in interface ome.model.IObject

retrieves a value from this instance.

retrieve(String) - Method in class ome.model.jobs.ImportJob

Deprecated.

retrieve(String) - Method in class ome.model.jobs.IndexingJob

retrieve(String) - Method in class ome.model.jobs.IntegrityCheckJob

retrieve(String) - Method in class ome.model.jobs.Job

retrieve(String) - Method in class ome.model.jobs.JobOriginalFileLink

retrieve(String) - Method in class ome.model.jobs.JobStatus

retrieve(String) - Method in class ome.model.jobs.MetadataImportJob

retrieve(String) - Method in class ome.model.jobs.ParseJob

retrieve(String) - Method in class ome.model.jobs.PixelDataJob

retrieve(String) - Method in class ome.model.jobs.ScriptJob

retrieve(String) - Method in class ome.model.jobs.ThumbnailGenerationJob

retrieve(String) - Method in class ome.model.jobs.UploadJob

retrieve(String) - Method in class ome.model.meta.DBPatch

retrieve(String) - Method in class ome.model.meta.Event

retrieve(String) - Method in class ome.model.meta.EventLog

retrieve(String) - Method in class ome.model.meta.Experimenter

retrieve(String) - Method in class ome.model.meta.ExperimenterGroup

retrieve(String) - Method in class ome.model.meta.ExternalInfo

retrieve(String) - Method in class ome.model.meta.GroupExperimenterMap

retrieve(String) - Method in class ome.model.meta.Namespace

retrieve(String) - Method in class ome.model.meta.Node

retrieve(String) - Method in class ome.model.meta.Session

retrieve(String) - Method in class ome.model.meta.Share

retrieve(String) - Method in class ome.model.meta.ShareMember

retrieve(String) - Method in class ome.model.roi.AffineTransform

retrieve(String) - Method in class ome.model.roi.Ellipse

retrieve(String) - Method in class ome.model.roi.Label

retrieve(String) - Method in class ome.model.roi.Line

retrieve(String) - Method in class ome.model.roi.Mask

retrieve(String) - Method in class ome.model.roi.Path

Deprecated.

retrieve(String) - Method in class ome.model.roi.Point

retrieve(String) - Method in class ome.model.roi.Polygon

retrieve(String) - Method in class ome.model.roi.Polyline

retrieve(String) - Method in class ome.model.roi.Rectangle

retrieve(String) - Method in class ome.model.roi.Roi

retrieve(String) - Method in class ome.model.roi.Shape

retrieve(String) - Method in class ome.model.screen.Plate

retrieve(String) - Method in class ome.model.screen.PlateAcquisition

retrieve(String) - Method in class ome.model.screen.Reagent

retrieve(String) - Method in class ome.model.screen.Screen

retrieve(String) - Method in class ome.model.screen.ScreenPlateLink

retrieve(String) - Method in class ome.model.screen.Well

retrieve(String) - Method in class ome.model.screen.WellReagentLink

retrieve(String) - Method in class ome.model.screen.WellSample

retrieve(String) - Method in class ome.model.stats.StatsInfo

retrieve(String) - Method in class ome.util.PermDetails

returnedClass() - Method in class ome.model.units.GenericEnumType

reverse - Variable in class ome.model.display.ReverseIntensityContext

REVERSE - Static variable in class ome.model.display.ReverseIntensityContext

reverse(ModelBased) - Method in interface ome.util.ReverseModelMapper

reverse(Collection) - Method in interface ome.util.ReverseModelMapper

ReverseIntensityContext - Class in ome.model.display

ReverseIntensityContext() - Constructor for class ome.model.display.ReverseIntensityContext

ReverseIntensityContext(Long) - Constructor for class ome.model.display.ReverseIntensityContext

ReverseIntensityContext(Long, boolean) - Constructor for class ome.model.display.ReverseIntensityContext

Main constructor.

ReverseIntensityContext(Boolean) - Constructor for class ome.model.display.ReverseIntensityContext

ReverseModelMapper - Interface in ome.util

revoke(Permissions.Role, Permissions.Right...) - Method in class ome.model.internal.Permissions

turns off the rights for the given role.

revokeAll(Permissions) - Method in class ome.model.internal.Permissions

takes a permissions instance and ANDs it with the current instance.

rewriteHql(String, String, Object) - Method in class ome.util.actions.PostgresSqlAction

The temp_ids infrastructure was never properly put in place for the "psql" profile.

rewriteHql(String, String, Object) - Method in class ome.util.SqlAction.Impl

rewriteHql(String, String, Object) - Method in interface ome.util.SqlAction

Allows the specific database implementations a chance to modify queries.

Roi - Class in ome.model.roi

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Roi() - Constructor for class ome.model.roi.Roi

Roi(Long) - Constructor for class ome.model.roi.Roi

Roi(Long, boolean) - Constructor for class ome.model.roi.Roi

Main constructor.

roi - Variable in class ome.model.roi.Shape

ROI - Static variable in class ome.model.roi.Shape

Roi.Details - Class in ome.model.roi

RoiAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

RoiAnnotationLink() - Constructor for class ome.model.annotations.RoiAnnotationLink

RoiAnnotationLink(Long) - Constructor for class ome.model.annotations.RoiAnnotationLink

RoiAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.RoiAnnotationLink

Main constructor.

RoiAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.RoiAnnotationLink

RoiAnnotationLink.Details - Class in ome.model.annotations

roiByImage(long) - Method in class ome.util.actions.PostgresSqlAction

roiByImage(long) - Method in interface ome.util.SqlAction

roiLinks - Variable in class ome.model.containers.Folder

ROILINKS - Static variable in class ome.model.containers.Folder

ROILINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder

rois - Variable in class ome.model.core.Image

ROIS - Static variable in class ome.model.core.Image

rollbackSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction

rollbackSavepoint(String) - Method in interface ome.util.SqlAction

RootException - Exception in ome.conditions

abstract superclass of all Omero exceptions.

RootException(String) - Constructor for exception ome.conditions.RootException

row - Variable in class ome.model.screen.Well

ROW - Static variable in class ome.model.screen.Well

rowNamingConvention - Variable in class ome.model.screen.Plate

ROWNAMINGCONVENTION - Static variable in class ome.model.screen.Plate

rows - Variable in class ome.model.screen.Plate

ROWS - Static variable in class ome.model.screen.Plate

S

sameRights(Permissions) - Method in class ome.model.internal.Permissions

returns true if two Permissions instances have all the same Permissions.Right / Permissions.Role pairs granted.

samplesPerPixel - Variable in class ome.model.core.LogicalChannel

SAMPLESPERPIXEL - Static variable in class ome.model.core.LogicalChannel

scale - Variable in class ome.model.meta.Node

SCALE - Static variable in class ome.model.meta.Node

scheduledFor - Variable in class ome.model.jobs.Job

SCHEDULEDFOR - Static variable in class ome.model.jobs.Job

screen - Variable in class ome.model.screen.Reagent

SCREEN - Static variable in class ome.model.screen.Reagent

Screen - Class in ome.model.screen

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Screen() - Constructor for class ome.model.screen.Screen

Screen(Long) - Constructor for class ome.model.screen.Screen

Screen(Long, boolean) - Constructor for class ome.model.screen.Screen

Main constructor.

Screen(String) - Constructor for class ome.model.screen.Screen

Screen.Details - Class in ome.model.screen

ScreenAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ScreenAnnotationLink() - Constructor for class ome.model.annotations.ScreenAnnotationLink

ScreenAnnotationLink(Long) - Constructor for class ome.model.annotations.ScreenAnnotationLink

ScreenAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ScreenAnnotationLink

Main constructor.

ScreenAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ScreenAnnotationLink

ScreenAnnotationLink.Details - Class in ome.model.annotations

screenLinks - Variable in class ome.model.screen.Plate

SCREENLINKS - Static variable in class ome.model.screen.Plate

SCREENLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Plate

ScreenPlateLink - Class in ome.model.screen

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ScreenPlateLink() - Constructor for class ome.model.screen.ScreenPlateLink

ScreenPlateLink(Long) - Constructor for class ome.model.screen.ScreenPlateLink

ScreenPlateLink(Long, boolean) - Constructor for class ome.model.screen.ScreenPlateLink

Main constructor.

ScreenPlateLink(IObject, IObject) - Constructor for class ome.model.screen.ScreenPlateLink

ScreenPlateLink.Details - Class in ome.model.screen

ScriptJob - Class in ome.model.jobs

ScriptJob() - Constructor for class ome.model.jobs.ScriptJob

ScriptJob(Long) - Constructor for class ome.model.jobs.ScriptJob

ScriptJob(Long, boolean) - Constructor for class ome.model.jobs.ScriptJob

Main constructor.

scriptRepo(long, Set<String>) - Method in class ome.util.SqlAction.Impl

scriptRepo(long, Set<String>) - Method in interface ome.util.SqlAction

Similar to SqlAction.fileRepo(long), but only returns values for files which are also scripts.

seconds - Variable in exception ome.conditions.LockTimeout

Informational field on number of seconds that the lock was tried for.

SecurityViolation - Exception in ome.conditions

User does not have permissions to perform given action.

SecurityViolation(String) - Constructor for exception ome.conditions.SecurityViolation

selectCurrentEventLog(String) - Method in class ome.util.actions.PostgresSqlAction

selectCurrentEventLog(String) - Method in class ome.util.SqlAction.Impl

selectCurrentEventLog(String) - Method in interface ome.util.SqlAction

serialNumber - Variable in class ome.model.acquisition.Detector

SERIALNUMBER - Static variable in class ome.model.acquisition.Detector

serialNumber - Variable in class ome.model.acquisition.Dichroic

SERIALNUMBER - Static variable in class ome.model.acquisition.Dichroic

serialNumber - Variable in class ome.model.acquisition.Filter

SERIALNUMBER - Static variable in class ome.model.acquisition.Filter

serialNumber - Variable in class ome.model.acquisition.FilterSet

SERIALNUMBER - Static variable in class ome.model.acquisition.FilterSet

serialNumber - Variable in class ome.model.acquisition.LightSource

SERIALNUMBER - Static variable in class ome.model.acquisition.LightSource

serialNumber - Variable in class ome.model.acquisition.Microscope

SERIALNUMBER - Static variable in class ome.model.acquisition.Microscope

serialNumber - Variable in class ome.model.acquisition.Objective

SERIALNUMBER - Static variable in class ome.model.acquisition.Objective

series - Variable in class ome.model.core.Image

SERIES - Static variable in class ome.model.core.Image

session - Variable in class ome.model.meta.Event

SESSION - Static variable in class ome.model.meta.Event

Session - Class in ome.model.meta

Session() - Constructor for class ome.model.meta.Session

Session(Long) - Constructor for class ome.model.meta.Session

Session(Long, boolean) - Constructor for class ome.model.meta.Session

Main constructor.

Session(Node, String, Experimenter, Long, Long, Timestamp, String) - Constructor for class ome.model.meta.Session

Session.Details - Class in ome.model.meta

SessionAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

SessionAnnotationLink() - Constructor for class ome.model.annotations.SessionAnnotationLink

SessionAnnotationLink(Long) - Constructor for class ome.model.annotations.SessionAnnotationLink

SessionAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.SessionAnnotationLink

Main constructor.

SessionAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.SessionAnnotationLink

SessionAnnotationLink.Details - Class in ome.model.annotations

sessionContext - Variable in exception ome.conditions.SessionTimeoutException

SessionException - Exception in ome.conditions

Base session related exception.

SessionException(String) - Constructor for exception ome.conditions.SessionException

sessionId(String) - Method in class ome.util.actions.PostgresSqlAction

sessionId(String) - Method in interface ome.util.SqlAction

sessions - Variable in class ome.model.meta.Node

SESSIONS - Static variable in class ome.model.meta.Node

SessionTimeoutException - Exception in ome.conditions

The given session has expired and can no longer be used.

SessionTimeoutException(String, Object) - Constructor for exception ome.conditions.SessionTimeoutException

set(Permissions.Flag) - Method in class ome.model.internal.Permissions

turn a given Permissions.Flag on.

set(String, Object, Document, LuceneOptions) - Method in class ome.util.DetailsFieldBridge

setA00(Double) - Method in class ome.model.roi.AffineTransform

setA01(Double) - Method in class ome.model.roi.AffineTransform

setA02(Double) - Method in class ome.model.roi.AffineTransform

setA10(Double) - Method in class ome.model.roi.AffineTransform

setA11(Double) - Method in class ome.model.roi.AffineTransform

setA12(Double) - Method in class ome.model.roi.AffineTransform

setAcquisitionDate(Timestamp) - Method in class ome.model.core.Image

setAction(String) - Method in class ome.model.meta.EventLog

setActive(Boolean) - Method in class ome.model.display.ChannelBinding

setActive(Boolean) - Method in class ome.model.display.ProjectionDef

setActive(Boolean) - Method in class ome.model.meta.Share

setAirPressure(Pressure) - Method in class ome.model.acquisition.ImagingEnvironment

setAlpha(Integer) - Method in class ome.model.core.Channel

setAlpha(Integer) - Method in class ome.model.display.ChannelBinding

setAlpha(Integer) - Method in class ome.model.screen.Well

setAmplificationGain(Double) - Method in class ome.model.acquisition.Detector

setAnnotationLinks(Set<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<FolderAnnotationLink>) - Method in class ome.model.containers.Folder

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<ProjectAnnotationLink>) - Method in class ome.model.containers.Project

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<ChannelAnnotationLink>) - Method in class ome.model.core.Channel

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<ImageAnnotationLink>) - Method in class ome.model.core.Image

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<NodeAnnotationLink>) - Method in class ome.model.meta.Node

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<SessionAnnotationLink>) - Method in class ome.model.meta.Session

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<RoiAnnotationLink>) - Method in class ome.model.roi.Roi

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<PlateAnnotationLink>) - Method in class ome.model.screen.Plate

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen

setter for annotationLinks should be avoided.

setAnnotationLinks(Set<WellAnnotationLink>) - Method in class ome.model.screen.Well

setter for annotationLinks should be avoided.

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Detector

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Dichroic

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Filter

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Instrument

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightPath

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightSource

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Objective

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.annotations.Annotation

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Dataset

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Folder

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Project

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Channel

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Image

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.OriginalFile

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.PlaneInfo

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.fs.Fileset

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Experimenter

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.ExperimenterGroup

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Namespace

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Node

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Session

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.roi.Roi

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.roi.Shape

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Plate

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.PlateAcquisition

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Reagent

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Screen

setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Well

setArchived(Boolean) - Method in class ome.model.core.Image

setAtime(Timestamp) - Method in class ome.model.core.OriginalFile

setAttenuation(Double) - Method in class ome.model.acquisition.LightSettings

setAxis(ProjectionAxis) - Method in class ome.model.display.ProjectionDef

setBinning(Binning) - Method in class ome.model.acquisition.DetectorSettings

setBitResolution(Integer) - Method in class ome.model.display.QuantumDef

setBitSize(Integer) - Method in class ome.model.enums.PixelsType

setBlue(Integer) - Method in class ome.model.core.Channel

setBlue(Integer) - Method in class ome.model.display.ChannelBinding

setBlue(Integer) - Method in class ome.model.screen.Well

setBoolValue(Boolean) - Method in class ome.model.annotations.BooleanAnnotation

setBytes(byte[]) - Method in class ome.model.roi.Mask

setCalibratedMagnification(Double) - Method in class ome.model.acquisition.Objective

setCdEnd(Integer) - Method in class ome.model.display.QuantumDef

setCdStart(Integer) - Method in class ome.model.display.QuantumDef

setChannel(int, Channel) - Method in class ome.model.core.Pixels

Sets the ome.model.core.Channel at the given index.

setChannelBinding(ChannelBinding) - Method in class ome.model.display.CodomainMapContext

setChannelBinding(int, ChannelBinding) - Method in class ome.model.display.RenderingDef

Sets the ome.model.display.ChannelBinding at the given index.

setChannels(Set<Channel>) - Method in class ome.model.core.LogicalChannel

setter for channels should be avoided.

setChannels(List<Channel>) - Method in class ome.model.core.Pixels

setter for channels should be avoided.

setChild(IObject) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

setChild(IObject) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

setChild(IObject) - Method in class ome.model.acquisition.LightPathEmissionFilterLink

setChild(IObject) - Method in class ome.model.acquisition.LightPathExcitationFilterLink

setChild(IObject) - Method in class ome.model.annotations.AnnotationAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.ChannelAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.DatasetAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.DetectorAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.DichroicAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.ExperimenterAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.FilesetAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.FilterAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.FolderAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.ImageAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.InstrumentAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.LightPathAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.LightSourceAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.NamespaceAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.NodeAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.ObjectiveAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.OriginalFileAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.PlaneInfoAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.PlateAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.ProjectAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.ReagentAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.RoiAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.ScreenAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.SessionAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.ShapeAnnotationLink

setChild(IObject) - Method in class ome.model.annotations.WellAnnotationLink

setChild(IObject) - Method in class ome.model.containers.DatasetImageLink

setChild(IObject) - Method in class ome.model.containers.FolderImageLink

setChild(IObject) - Method in class ome.model.containers.FolderRoiLink

setChild(IObject) - Method in class ome.model.containers.ProjectDatasetLink

setChild(IObject) - Method in class ome.model.core.PixelsOriginalFileMap

setChild(IObject) - Method in class ome.model.fs.FilesetJobLink

setChild(IObject) - Method in interface ome.model.ILink

setChild(IObject) - Method in class ome.model.jobs.JobOriginalFileLink

setChild(IObject) - Method in class ome.model.meta.GroupExperimenterMap

setChild(IObject) - Method in class ome.model.meta.ShareMember

setChild(IObject) - Method in class ome.model.screen.ScreenPlateLink

setChild(IObject) - Method in class ome.model.screen.WellReagentLink

setChildFolders(Set<Folder>) - Method in class ome.model.containers.Folder

setter for childFolders should be avoided.

setClientPath(String) - Method in class ome.model.fs.FilesetEntry

setClosed(Timestamp) - Method in class ome.model.meta.Session

setCo2percent(Double) - Method in class ome.model.acquisition.ImagingEnvironment

setCodomainMapContext(int, CodomainMapContext) - Method in class ome.model.display.ChannelBinding

Sets the ome.model.display.CodomainMapContext at the given index.

setCoefficient(Double) - Method in class ome.model.display.ChannelBinding

setColumn(Integer) - Method in class ome.model.screen.Well

setColumnNamingConvention(String) - Method in class ome.model.screen.Plate

setColumns(Integer) - Method in class ome.model.screen.Plate

setCompression(Double) - Method in class ome.model.display.RenderingDef

setConfig(List<NamedValue>) - Method in class ome.model.meta.Experimenter

setConfig(List<NamedValue>) - Method in class ome.model.meta.ExperimenterGroup

setConn(String) - Method in class ome.model.meta.Node

setConstant(Boolean) - Method in class ome.model.display.PlaneSlicingContext

setContainingEvent(Event) - Method in class ome.model.meta.Event

setContext(IObject) - Method in class ome.model.internal.Details

set entity to which this Details belongs.

setContexts(Object[]) - Method in class ome.model.internal.Details

setContrastMethod(ContrastMethod) - Method in class ome.model.core.LogicalChannel

setCorrection(Correction) - Method in class ome.model.acquisition.Objective

setCorrectionCollar(Double) - Method in class ome.model.acquisition.ObjectiveSettings

setCreationEvent(Event) - Method in interface ome.model.IDetails

setCreationEvent(Event) - Method in class ome.model.internal.Details

setCtime(Timestamp) - Method in class ome.model.core.OriginalFile

setCurrentEventLog(long, String) - Method in class ome.util.actions.PostgresSqlAction

setCurrentEventLog(long, String) - Method in class ome.util.SqlAction.Impl

setCurrentEventLog(long, String) - Method in interface ome.util.SqlAction

setCurrentPatch(Integer) - Method in class ome.model.meta.DBPatch

setCurrentVersion(String) - Method in class ome.model.meta.DBPatch

setCutIn(Length) - Method in class ome.model.acquisition.TransmittanceRange

setCutInTolerance(Length) - Method in class ome.model.acquisition.TransmittanceRange

setCutOut(Length) - Method in class ome.model.acquisition.TransmittanceRange

setCutOutTolerance(Length) - Method in class ome.model.acquisition.TransmittanceRange

setD(String) - Method in class ome.model.roi.Path

Deprecated.

setData(byte[]) - Method in class ome.model.meta.Share

setDatasetLinks(Set<ProjectDatasetLink>) - Method in class ome.model.containers.Project

setter for datasetLinks should be avoided.

setDatasetLinks(Set<DatasetImageLink>) - Method in class ome.model.core.Image

setter for datasetLinks should be avoided.

setDatasetLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Project

setDatasetLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Image

setDefaultEventType(String) - Method in class ome.model.meta.Session

setDefaultSample(Integer) - Method in class ome.model.screen.Plate

setDefaultT(Integer) - Method in class ome.model.display.RenderingDef

setDefaultZ(Integer) - Method in class ome.model.display.RenderingDef

setDeltaT(Time) - Method in class ome.model.core.PlaneInfo

setDescription(String) - Method in class ome.model.annotations.Annotation

setDescription(String) - Method in class ome.model.containers.Dataset

setDescription(String) - Method in class ome.model.containers.Folder

setDescription(String) - Method in class ome.model.containers.Project

setDescription(String) - Method in class ome.model.core.Image

setDescription(String) - Method in class ome.model.experiment.Experiment

setDescription(String) - Method in class ome.model.experiment.MicrobeamManipulation

setDescription(String) - Method in class ome.model.jobs.ScriptJob

setDescription(String) - Method in class ome.model.meta.ExperimenterGroup

setDescription(String) - Method in class ome.model.meta.Namespace

setDescription(String) - Method in class ome.model.roi.Roi

setDescription(String) - Method in class ome.model.screen.Plate

setDescription(String) - Method in class ome.model.screen.PlateAcquisition

setDescription(String) - Method in class ome.model.screen.Reagent

setDescription(String) - Method in class ome.model.screen.Screen

setDetails(Details) - Method in class ome.model.acquisition.Detector

setDetails(Details) - Method in class ome.model.acquisition.DetectorSettings

setDetails(Details) - Method in class ome.model.acquisition.Dichroic

setDetails(Details) - Method in class ome.model.acquisition.Filter

setDetails(Details) - Method in class ome.model.acquisition.FilterSet

setDetails(Details) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

setDetails(Details) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

setDetails(Details) - Method in class ome.model.acquisition.ImagingEnvironment

setDetails(Details) - Method in class ome.model.acquisition.Instrument

setDetails(Details) - Method in class ome.model.acquisition.LightPath

setDetails(Details) - Method in class ome.model.acquisition.LightPathEmissionFilterLink

setDetails(Details) - Method in class ome.model.acquisition.LightPathExcitationFilterLink

setDetails(Details) - Method in class ome.model.acquisition.LightSettings

setDetails(Details) - Method in class ome.model.acquisition.LightSource

setDetails(Details) - Method in class ome.model.acquisition.Microscope

setDetails(Details) - Method in class ome.model.acquisition.Objective

setDetails(Details) - Method in class ome.model.acquisition.ObjectiveSettings

setDetails(Details) - Method in class ome.model.acquisition.OTF

setDetails(Details) - Method in class ome.model.acquisition.StageLabel

setDetails(Details) - Method in class ome.model.acquisition.TransmittanceRange

setDetails(Details) - Method in class ome.model.annotations.Annotation

setDetails(Details) - Method in class ome.model.annotations.AnnotationAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.ChannelAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.DatasetAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.DetectorAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.DichroicAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.ExperimenterAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.FilesetAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.FilterAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.FolderAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.ImageAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.InstrumentAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.LightPathAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.LightSourceAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.NamespaceAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.NodeAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.ObjectiveAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.OriginalFileAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.PlaneInfoAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.PlateAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.ProjectAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.ReagentAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.RoiAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.ScreenAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.SessionAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.ShapeAnnotationLink

setDetails(Details) - Method in class ome.model.annotations.WellAnnotationLink

setDetails(Details) - Method in class ome.model.containers.Dataset

setDetails(Details) - Method in class ome.model.containers.DatasetImageLink

setDetails(Details) - Method in class ome.model.containers.Folder

setDetails(Details) - Method in class ome.model.containers.FolderImageLink

setDetails(Details) - Method in class ome.model.containers.FolderRoiLink

setDetails(Details) - Method in class ome.model.containers.Project

setDetails(Details) - Method in class ome.model.containers.ProjectDatasetLink

setDetails(Details) - Method in class ome.model.core.Channel

setDetails(Details) - Method in class ome.model.core.Image

setDetails(Details) - Method in class ome.model.core.LogicalChannel

setDetails(Details) - Method in class ome.model.core.OriginalFile

setDetails(Details) - Method in class ome.model.core.Pixels

setDetails(Details) - Method in class ome.model.core.PixelsOriginalFileMap

setDetails(Details) - Method in class ome.model.core.PlaneInfo

setDetails(Details) - Method in class ome.model.display.ChannelBinding

setDetails(Details) - Method in class ome.model.display.CodomainMapContext

setDetails(Details) - Method in class ome.model.display.ProjectionDef

setDetails(Details) - Method in class ome.model.display.QuantumDef

setDetails(Details) - Method in class ome.model.display.RenderingDef

setDetails(Details) - Method in class ome.model.display.Thumbnail

setDetails(Details) - Method in class ome.model.enums.AcquisitionMode

setDetails(Details) - Method in class ome.model.enums.AdminPrivilege

setDetails(Details) - Method in class ome.model.enums.ArcType

setDetails(Details) - Method in class ome.model.enums.Binning

setDetails(Details) - Method in class ome.model.enums.ChecksumAlgorithm

setDetails(Details) - Method in class ome.model.enums.ContrastMethod

setDetails(Details) - Method in class ome.model.enums.Correction

setDetails(Details) - Method in class ome.model.enums.DetectorType

setDetails(Details) - Method in class ome.model.enums.DimensionOrder

setDetails(Details) - Method in class ome.model.enums.EventType

setDetails(Details) - Method in class ome.model.enums.ExperimentType

setDetails(Details) - Method in class ome.model.enums.Family

setDetails(Details) - Method in class ome.model.enums.FilamentType

setDetails(Details) - Method in class ome.model.enums.FilterType

setDetails(Details) - Method in class ome.model.enums.Format

setDetails(Details) - Method in class ome.model.enums.Illumination

setDetails(Details) - Method in class ome.model.enums.Immersion

setDetails(Details) - Method in class ome.model.enums.LaserMedium

setDetails(Details) - Method in class ome.model.enums.LaserType

setDetails(Details) - Method in class ome.model.enums.Medium

setDetails(Details) - Method in class ome.model.enums.MicrobeamManipulationType

setDetails(Details) - Method in class ome.model.enums.MicroscopeType

setDetails(Details) - Method in class ome.model.enums.PhotometricInterpretation

setDetails(Details) - Method in class ome.model.enums.PixelsType

setDetails(Details) - Method in class ome.model.enums.ProjectionAxis

setDetails(Details) - Method in class ome.model.enums.ProjectionType

setDetails(Details) - Method in class ome.model.enums.Pulse

setDetails(Details) - Method in class ome.model.enums.RenderingModel

setDetails(Details) - Method in class ome.model.experiment.Experiment

setDetails(Details) - Method in class ome.model.experiment.MicrobeamManipulation

setDetails(Details) - Method in class ome.model.fs.Fileset

setDetails(Details) - Method in class ome.model.fs.FilesetEntry

setDetails(Details) - Method in class ome.model.fs.FilesetJobLink

setDetails(Details) - Method in class ome.model.internal.Link

setDetails(Details) - Method in class ome.model.jobs.Job

setDetails(Details) - Method in class ome.model.jobs.JobOriginalFileLink

setDetails(Details) - Method in class ome.model.jobs.JobStatus

setDetails(Details) - Method in class ome.model.meta.DBPatch

setDetails(Details) - Method in class ome.model.meta.Event

setDetails(Details) - Method in class ome.model.meta.EventLog

setDetails(Details) - Method in class ome.model.meta.Experimenter

setDetails(Details) - Method in class ome.model.meta.ExperimenterGroup

setDetails(Details) - Method in class ome.model.meta.ExternalInfo

setDetails(Details) - Method in class ome.model.meta.GroupExperimenterMap

setDetails(Details) - Method in class ome.model.meta.Namespace

setDetails(Details) - Method in class ome.model.meta.Node

setDetails(Details) - Method in class ome.model.meta.Session

setDetails(Details) - Method in class ome.model.meta.ShareMember

setDetails(Details) - Method in class ome.model.roi.AffineTransform

setDetails(Details) - Method in class ome.model.roi.Roi

setDetails(Details) - Method in class ome.model.roi.Shape

setDetails(Details) - Method in class ome.model.screen.Plate

setDetails(Details) - Method in class ome.model.screen.PlateAcquisition

setDetails(Details) - Method in class ome.model.screen.Reagent

setDetails(Details) - Method in class ome.model.screen.Screen

setDetails(Details) - Method in class ome.model.screen.ScreenPlateLink

setDetails(Details) - Method in class ome.model.screen.Well

setDetails(Details) - Method in class ome.model.screen.WellReagentLink

setDetails(Details) - Method in class ome.model.screen.WellSample

setDetails(Details) - Method in class ome.model.stats.StatsInfo

setDetector(Detector) - Method in class ome.model.acquisition.DetectorSettings

setDetector(Set<Detector>) - Method in class ome.model.acquisition.Instrument

setter for detector should be avoided.

setDetectorSettings(DetectorSettings) - Method in class ome.model.core.LogicalChannel

setDichroic(Dichroic) - Method in class ome.model.acquisition.FilterSet

setDichroic(Set<Dichroic>) - Method in class ome.model.acquisition.Instrument

setter for dichroic should be avoided.

setDichroic(Dichroic) - Method in class ome.model.acquisition.LightPath

setDimensionOrder(DimensionOrder) - Method in class ome.model.core.Pixels

setDisallow(boolean[], int, boolean) - Static method in class ome.model.internal.Permissions

Deprecated.

setDisallow(int, boolean) - Method in class ome.model.internal.Permissions

setDisallowAnnotate(boolean) - Method in class ome.model.internal.Permissions

setDisallowChgrp(boolean) - Method in class ome.model.internal.Permissions

setDisallowChown(boolean) - Method in class ome.model.internal.Permissions

setDisallowDelete(boolean) - Method in class ome.model.internal.Permissions

setDisallowEdit(boolean) - Method in class ome.model.internal.Permissions

setDisallowLink(boolean) - Method in class ome.model.internal.Permissions

setDisplay(Boolean) - Method in class ome.model.meta.Namespace

setDisplayName(String) - Method in class ome.model.meta.Namespace

setDoubleValue(Double) - Method in class ome.model.annotations.DoubleAnnotation

setDown(Timestamp) - Method in class ome.model.meta.Node

setEmail(String) - Method in class ome.model.meta.Experimenter

setEmissionFilterLink(Set<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter

setter for emissionFilterLink should be avoided.

setEmissionFilterLink(Set<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet

setter for emissionFilterLink should be avoided.

setEmissionFilterLink(Set<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath

setter for emissionFilterLink should be avoided.

setEmissionFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Filter

setEmissionFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.FilterSet

setEmissionFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightPath

setEmissionWave(Length) - Method in class ome.model.core.LogicalChannel

setEndPlane(Integer) - Method in class ome.model.display.ProjectionDef

setEndTime(Timestamp) - Method in class ome.model.screen.PlateAcquisition

setEntityId(Long) - Method in class ome.model.meta.EventLog

setEntityId(Long) - Method in class ome.model.meta.ExternalInfo

setEntityType(String) - Method in class ome.model.meta.EventLog

setEntityType(String) - Method in class ome.model.meta.ExternalInfo

setEvent(Event) - Method in class ome.model.meta.EventLog

setEvents(Set<Event>) - Method in class ome.model.meta.Session

setter for events should be avoided.

setExcitationFilterLink(Set<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter

setter for excitationFilterLink should be avoided.

setExcitationFilterLink(Set<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet

setter for excitationFilterLink should be avoided.

setExcitationFilterLink(List<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath

setter for excitationFilterLink should be avoided.

setExcitationFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Filter

setExcitationFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.FilterSet

setExcitationFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightPath

setExcitationWave(Length) - Method in class ome.model.core.LogicalChannel

setExperiment(Experiment) - Method in class ome.model.core.Image

setExperiment(Experiment) - Method in class ome.model.experiment.MicrobeamManipulation

setExperimenter(Experimenter) - Method in class ome.model.meta.Event

setExperimenterGroup(ExperimenterGroup) - Method in class ome.model.meta.Event

setExposureTime(Time) - Method in class ome.model.core.PlaneInfo

setExternalDescription(String) - Method in class ome.model.screen.Well

setExternalIdentifier(String) - Method in class ome.model.screen.Plate

setExternalIdentifier(String) - Method in class ome.model.screen.Well

setExternalInfo(ExternalInfo) - Method in class ome.model.internal.Details

setFamily(Family) - Method in class ome.model.display.ChannelBinding

setFieldBridge(FieldBridge) - Static method in class ome.util.DetailsFieldBridge

setFile(OriginalFile) - Method in class ome.model.annotations.FileAnnotation

setFileRepo(Collection<Long>, String) - Method in class ome.util.actions.PostgresSqlAction

setFileRepo(Collection<Long>, String) - Method in interface ome.util.SqlAction

setFileset(Fileset) - Method in class ome.model.core.Image

setFileset(Fileset) - Method in class ome.model.fs.FilesetEntry

setFilesetEntries(Set<FilesetEntry>) - Method in class ome.model.core.OriginalFile

setter for filesetEntries should be avoided.

setFilesetEntry(int, FilesetEntry) - Method in class ome.model.fs.Fileset

Sets the ome.model.fs.FilesetEntry at the given index.

setFilesetJobLink(int, FilesetJobLink) - Method in class ome.model.fs.Fileset

Sets the ome.model.fs.FilesetJobLink at the given index.

setFillColor(Integer) - Method in class ome.model.roi.Shape

setFillRule(String) - Method in class ome.model.roi.Shape

setFilter(Set<Filter>) - Method in class ome.model.acquisition.Instrument

setter for filter should be avoided.

setFilter(Filter) - Method in class ome.parameters.Parameters

setFilter(PrivilegedStringTypeDescriptor.Filter, Function<Long, Boolean>) - Static method in class ome.util.PrivilegedStringTypeDescriptor

Set the filter implementation for a value of PrivilegedStringTypeDescriptor.Filter.

setFilterSet(Set<FilterSet>) - Method in class ome.model.acquisition.Instrument

setter for filterSet should be avoided.

setFilterSet(FilterSet) - Method in class ome.model.acquisition.OTF

setFilterSet(FilterSet) - Method in class ome.model.core.LogicalChannel

setFilterWheel(String) - Method in class ome.model.acquisition.Filter

setFinished(Timestamp) - Method in class ome.model.jobs.Job

setFinished(Timestamp) - Method in class ome.model.meta.DBPatch

setFirstName(String) - Method in class ome.model.meta.Experimenter

setFluor(String) - Method in class ome.model.core.LogicalChannel

setFolderLinks(Set<FolderImageLink>) - Method in class ome.model.core.Image

setter for folderLinks should be avoided.

setFolderLinks(Set<FolderRoiLink>) - Method in class ome.model.roi.Roi

setter for folderLinks should be avoided.

setFolderLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Image

setFolderLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.roi.Roi

setFontFamily(String) - Method in class ome.model.roi.Shape

setFontSize(Length) - Method in class ome.model.roi.Shape

setFontStyle(String) - Method in class ome.model.roi.Shape

setFormat(Format) - Method in class ome.model.core.Image

setFrequencyMultiplication(Integer) - Method in class ome.model.acquisition.Laser

setGain(Double) - Method in class ome.model.acquisition.Detector

setGain(Double) - Method in class ome.model.acquisition.DetectorSettings

setGlobalMax(Double) - Method in class ome.model.stats.StatsInfo

setGlobalMin(Double) - Method in class ome.model.stats.StatsInfo

setGreen(Integer) - Method in class ome.model.core.Channel

setGreen(Integer) - Method in class ome.model.display.ChannelBinding

setGreen(Integer) - Method in class ome.model.screen.Well

setGroup(ExperimenterGroup) - Method in class ome.model.internal.Details

setGroup(ExperimenterGroup) - Method in class ome.model.meta.Share

setGroupExperimenterMap(List<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter

setter for groupExperimenterMap should be avoided.

setGroupExperimenterMap(int, GroupExperimenterMap) - Method in class ome.model.meta.Experimenter

Sets the ome.model.meta.GroupExperimenterMap at the given index.

setGroupExperimenterMap(Set<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup

setter for groupExperimenterMap should be avoided.

setGroupname(String) - Method in class ome.model.jobs.Job

setHash(String) - Method in class ome.model.core.OriginalFile

setHasher(ChecksumAlgorithm) - Method in class ome.model.core.OriginalFile

setHeight(Double) - Method in class ome.model.roi.Mask

setHeight(Double) - Method in class ome.model.roi.Rectangle

setHumidity(Double) - Method in class ome.model.acquisition.ImagingEnvironment

setId(Long) - Method in class ome.model.acquisition.Detector

setId(Long) - Method in class ome.model.acquisition.DetectorSettings

setId(Long) - Method in class ome.model.acquisition.Dichroic

setId(Long) - Method in class ome.model.acquisition.Filter

setId(Long) - Method in class ome.model.acquisition.FilterSet

setId(Long) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

setId(Long) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

setId(Long) - Method in class ome.model.acquisition.ImagingEnvironment

setId(Long) - Method in class ome.model.acquisition.Instrument

setId(Long) - Method in class ome.model.acquisition.LightPath

setId(Long) - Method in class ome.model.acquisition.LightPathEmissionFilterLink

setId(Long) - Method in class ome.model.acquisition.LightPathExcitationFilterLink

setId(Long) - Method in class ome.model.acquisition.LightSettings

setId(Long) - Method in class ome.model.acquisition.LightSource

setId(Long) - Method in class ome.model.acquisition.Microscope

setId(Long) - Method in class ome.model.acquisition.Objective

setId(Long) - Method in class ome.model.acquisition.ObjectiveSettings

setId(Long) - Method in class ome.model.acquisition.OTF

setId(Long) - Method in class ome.model.acquisition.StageLabel

setId(Long) - Method in class ome.model.acquisition.TransmittanceRange

setId(Long) - Method in class ome.model.annotations.Annotation

setId(Long) - Method in class ome.model.annotations.AnnotationAnnotationLink

setId(Long) - Method in class ome.model.annotations.ChannelAnnotationLink

setId(Long) - Method in class ome.model.annotations.DatasetAnnotationLink

setId(Long) - Method in class ome.model.annotations.DetectorAnnotationLink

setId(Long) - Method in class ome.model.annotations.DichroicAnnotationLink

setId(Long) - Method in class ome.model.annotations.ExperimenterAnnotationLink

setId(Long) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

setId(Long) - Method in class ome.model.annotations.FilesetAnnotationLink

setId(Long) - Method in class ome.model.annotations.FilterAnnotationLink

setId(Long) - Method in class ome.model.annotations.FolderAnnotationLink

setId(Long) - Method in class ome.model.annotations.ImageAnnotationLink

setId(Long) - Method in class ome.model.annotations.InstrumentAnnotationLink

setId(Long) - Method in class ome.model.annotations.LightPathAnnotationLink

setId(Long) - Method in class ome.model.annotations.LightSourceAnnotationLink

setId(Long) - Method in class ome.model.annotations.NamespaceAnnotationLink

setId(Long) - Method in class ome.model.annotations.NodeAnnotationLink

setId(Long) - Method in class ome.model.annotations.ObjectiveAnnotationLink

setId(Long) - Method in class ome.model.annotations.OriginalFileAnnotationLink

setId(Long) - Method in class ome.model.annotations.PlaneInfoAnnotationLink

setId(Long) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

setId(Long) - Method in class ome.model.annotations.PlateAnnotationLink

setId(Long) - Method in class ome.model.annotations.ProjectAnnotationLink

setId(Long) - Method in class ome.model.annotations.ReagentAnnotationLink

setId(Long) - Method in class ome.model.annotations.RoiAnnotationLink

setId(Long) - Method in class ome.model.annotations.ScreenAnnotationLink

setId(Long) - Method in class ome.model.annotations.SessionAnnotationLink

setId(Long) - Method in class ome.model.annotations.ShapeAnnotationLink

setId(Long) - Method in class ome.model.annotations.WellAnnotationLink

setId(Long) - Method in class ome.model.containers.Dataset

setId(Long) - Method in class ome.model.containers.DatasetImageLink

setId(Long) - Method in class ome.model.containers.Folder

setId(Long) - Method in class ome.model.containers.FolderImageLink

setId(Long) - Method in class ome.model.containers.FolderRoiLink

setId(Long) - Method in class ome.model.containers.Project

setId(Long) - Method in class ome.model.containers.ProjectDatasetLink

setId(Long) - Method in class ome.model.core.Channel

setId(Long) - Method in class ome.model.core.Image

setId(Long) - Method in class ome.model.core.LogicalChannel

setId(Long) - Method in class ome.model.core.OriginalFile

setId(Long) - Method in class ome.model.core.Pixels

setId(Long) - Method in class ome.model.core.PixelsOriginalFileMap

setId(Long) - Method in class ome.model.core.PlaneInfo

setId(Long) - Method in class ome.model.display.ChannelBinding

setId(Long) - Method in class ome.model.display.CodomainMapContext

setId(Long) - Method in class ome.model.display.ProjectionDef

setId(Long) - Method in class ome.model.display.QuantumDef

setId(Long) - Method in class ome.model.display.RenderingDef

setId(Long) - Method in class ome.model.display.Thumbnail

setId(Long) - Method in class ome.model.enums.AcquisitionMode

setId(Long) - Method in class ome.model.enums.AdminPrivilege

setId(Long) - Method in class ome.model.enums.ArcType

setId(Long) - Method in class ome.model.enums.Binning

setId(Long) - Method in class ome.model.enums.ChecksumAlgorithm

setId(Long) - Method in class ome.model.enums.ContrastMethod

setId(Long) - Method in class ome.model.enums.Correction

setId(Long) - Method in class ome.model.enums.DetectorType

setId(Long) - Method in class ome.model.enums.DimensionOrder

setId(Long) - Method in class ome.model.enums.EventType

setId(Long) - Method in class ome.model.enums.ExperimentType

setId(Long) - Method in class ome.model.enums.Family

setId(Long) - Method in class ome.model.enums.FilamentType

setId(Long) - Method in class ome.model.enums.FilterType

setId(Long) - Method in class ome.model.enums.Format

setId(Long) - Method in class ome.model.enums.Illumination

setId(Long) - Method in class ome.model.enums.Immersion

setId(Long) - Method in class ome.model.enums.LaserMedium

setId(Long) - Method in class ome.model.enums.LaserType

setId(Long) - Method in class ome.model.enums.Medium

setId(Long) - Method in class ome.model.enums.MicrobeamManipulationType

setId(Long) - Method in class ome.model.enums.MicroscopeType

setId(Long) - Method in class ome.model.enums.PhotometricInterpretation

setId(Long) - Method in class ome.model.enums.PixelsType

setId(Long) - Method in class ome.model.enums.ProjectionAxis

setId(Long) - Method in class ome.model.enums.ProjectionType

setId(Long) - Method in class ome.model.enums.Pulse

setId(Long) - Method in class ome.model.enums.RenderingModel

setId(Long) - Method in class ome.model.experiment.Experiment

setId(Long) - Method in class ome.model.experiment.MicrobeamManipulation

setId(Long) - Method in class ome.model.fs.Fileset

setId(Long) - Method in class ome.model.fs.FilesetEntry

setId(Long) - Method in class ome.model.fs.FilesetJobLink

setId(Long) - Method in class ome.model.internal.Link

setId(Long) - Method in interface ome.model.IObject

usually unneeded.

setId(Long) - Method in class ome.model.jobs.Job

setId(Long) - Method in class ome.model.jobs.JobOriginalFileLink

setId(Long) - Method in class ome.model.jobs.JobStatus

setId(Long) - Method in class ome.model.meta.DBPatch

setId(Long) - Method in class ome.model.meta.Event

setId(Long) - Method in class ome.model.meta.EventLog

setId(Long) - Method in class ome.model.meta.Experimenter

setId(Long) - Method in class ome.model.meta.ExperimenterGroup

setId(Long) - Method in class ome.model.meta.ExternalInfo

setId(Long) - Method in class ome.model.meta.GroupExperimenterMap

setId(Long) - Method in class ome.model.meta.Namespace

setId(Long) - Method in class ome.model.meta.Node

setId(Long) - Method in class ome.model.meta.Session

setId(Long) - Method in class ome.model.meta.ShareMember

setId(Long) - Method in class ome.model.roi.AffineTransform

setId(Long) - Method in class ome.model.roi.Roi

setId(Long) - Method in class ome.model.roi.Shape

setId(Long) - Method in class ome.model.screen.Plate

setId(Long) - Method in class ome.model.screen.PlateAcquisition

setId(Long) - Method in class ome.model.screen.Reagent

setId(Long) - Method in class ome.model.screen.Screen

setId(Long) - Method in class ome.model.screen.ScreenPlateLink

setId(Long) - Method in class ome.model.screen.Well

setId(Long) - Method in class ome.model.screen.WellReagentLink

setId(Long) - Method in class ome.model.screen.WellSample

setId(Long) - Method in class ome.model.stats.StatsInfo

setId(Long) - Method in class ome.util.PermDetails

setIllumination(Illumination) - Method in class ome.model.core.LogicalChannel

setImage(Image) - Method in class ome.model.core.Pixels

setImage(Image) - Method in class ome.model.roi.Roi

setImage(Image) - Method in class ome.model.screen.WellSample

setImageDescription(String) - Method in class ome.model.jobs.ImportJob

Deprecated.

setImageLinks(Set<DatasetImageLink>) - Method in class ome.model.containers.Dataset

setter for imageLinks should be avoided.

setImageLinks(Set<FolderImageLink>) - Method in class ome.model.containers.Folder

setter for imageLinks should be avoided.

setImageLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Dataset

setImageLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Folder

setImageName(String) - Method in class ome.model.jobs.ImportJob

Deprecated.

setImages(Set<Image>) - Method in class ome.model.fs.Fileset

setter for images should be avoided.

setImagingEnvironment(ImagingEnvironment) - Method in class ome.model.core.Image

setImmersion(Immersion) - Method in class ome.model.acquisition.Objective

setInputEnd(Double) - Method in class ome.model.display.ChannelBinding

setInputStart(Double) - Method in class ome.model.display.ChannelBinding

setInstitution(String) - Method in class ome.model.meta.Experimenter

setInstrument(Instrument) - Method in class ome.model.acquisition.Detector

setInstrument(Instrument) - Method in class ome.model.acquisition.Dichroic

setInstrument(Instrument) - Method in class ome.model.acquisition.Filter

setInstrument(Instrument) - Method in class ome.model.acquisition.FilterSet

setInstrument(Instrument) - Method in class ome.model.acquisition.LightSource

setInstrument(Instrument) - Method in class ome.model.acquisition.Objective

setInstrument(Instrument) - Method in class ome.model.acquisition.OTF

setInstrument(Instrument) - Method in class ome.model.core.Image

setIntegration(Integer) - Method in class ome.model.acquisition.DetectorSettings

setIris(Boolean) - Method in class ome.model.acquisition.Objective

setItemCount(Long) - Method in class ome.model.meta.Share

setJobLinks(List<FilesetJobLink>) - Method in class ome.model.fs.Fileset

setter for jobLinks should be avoided.

setJobLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.fs.Fileset

setKey(String) - Method in class ome.util.MapPut

setKeywords(List<String>) - Method in class ome.model.meta.Namespace

setLaserMedium(LaserMedium) - Method in class ome.model.acquisition.Laser

setLastName(String) - Method in class ome.model.meta.Experimenter

setLdap(Boolean) - Method in class ome.model.meta.Experimenter

setLdap(Boolean) - Method in class ome.model.meta.ExperimenterGroup

setLensNA(Double) - Method in class ome.model.acquisition.Objective

setLightPath(LightPath) - Method in class ome.model.core.LogicalChannel

setLightPathExcitationFilterLink(int, LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath

Sets the ome.model.acquisition.LightPathExcitationFilterLink at the given index.

setLightSource(Set<LightSource>) - Method in class ome.model.acquisition.Instrument

setter for lightSource should be avoided.

setLightSource(LightSource) - Method in class ome.model.acquisition.LightSettings

setLightSourceSettings(LightSettings) - Method in class ome.model.core.LogicalChannel

setLightSourceSettings(Set<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation

setter for lightSourceSettings should be avoided.

setLocked(Boolean) - Method in class ome.model.roi.Shape

setLogicalChannel(LogicalChannel) - Method in class ome.model.core.Channel

setLogs(Set<EventLog>) - Method in class ome.model.meta.Event

setter for logs should be avoided.

setLongValue(Long) - Method in class ome.model.annotations.LongAnnotation

setLookupTable(String) - Method in class ome.model.core.Channel

setLookupTable(String) - Method in class ome.model.display.ChannelBinding

setLotNumber(String) - Method in class ome.model.acquisition.Detector

setLotNumber(String) - Method in class ome.model.acquisition.Dichroic

setLotNumber(String) - Method in class ome.model.acquisition.Filter

setLotNumber(String) - Method in class ome.model.acquisition.FilterSet

setLotNumber(String) - Method in class ome.model.acquisition.LightSource

setLotNumber(String) - Method in class ome.model.acquisition.Microscope

setLotNumber(String) - Method in class ome.model.acquisition.Objective

setLowerLimit(Integer) - Method in class ome.model.display.PlaneSlicingContext

setLsid(String) - Method in class ome.model.meta.ExternalInfo

setManufacturer(String) - Method in class ome.model.acquisition.Detector

setManufacturer(String) - Method in class ome.model.acquisition.Dichroic

setManufacturer(String) - Method in class ome.model.acquisition.Filter

setManufacturer(String) - Method in class ome.model.acquisition.FilterSet

setManufacturer(String) - Method in class ome.model.acquisition.LightSource

setManufacturer(String) - Method in class ome.model.acquisition.Microscope

setManufacturer(String) - Method in class ome.model.acquisition.Objective

setMap(List<NamedValue>) - Method in class ome.model.acquisition.GenericExcitationSource

setMap(List<NamedValue>) - Method in class ome.model.acquisition.ImagingEnvironment

setMap(Map<String, Object>) - Method in class ome.util.MapPut

setMapValue(List<NamedValue>) - Method in class ome.model.annotations.MapAnnotation

setMarkerEnd(String) - Method in class ome.model.roi.Line

setMarkerEnd(String) - Method in class ome.model.roi.Polyline

setMarkerStart(String) - Method in class ome.model.roi.Line

setMarkerStart(String) - Method in class ome.model.roi.Polyline

setMaximumFieldCount(Integer) - Method in class ome.model.screen.PlateAcquisition

setMedium(Medium) - Method in class ome.model.acquisition.ObjectiveSettings

setMessage(String) - Method in class ome.model.jobs.Job

setMessage(String) - Method in class ome.model.meta.DBPatch

setMessage(String) - Method in class ome.model.meta.Session

setMethodology(String) - Method in class ome.model.core.Pixels

setMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.acquisition.LightSettings

setMicrobeamManipulation(Set<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment

setter for microbeamManipulation should be avoided.

setMicroscope(Microscope) - Method in class ome.model.acquisition.Instrument

setMiddleName(String) - Method in class ome.model.meta.Experimenter

setMimetype(String) - Method in class ome.model.core.OriginalFile

setMimeType(String) - Method in class ome.model.display.Thumbnail

setMode(AcquisitionMode) - Method in class ome.model.core.LogicalChannel

setModel(String) - Method in class ome.model.acquisition.Detector

setModel(String) - Method in class ome.model.acquisition.Dichroic

setModel(String) - Method in class ome.model.acquisition.Filter

setModel(String) - Method in class ome.model.acquisition.FilterSet

setModel(String) - Method in class ome.model.acquisition.LightSource

setModel(String) - Method in class ome.model.acquisition.Microscope

setModel(String) - Method in class ome.model.acquisition.Objective

setModel(RenderingModel) - Method in class ome.model.display.RenderingDef

setMtime(Timestamp) - Method in class ome.model.core.OriginalFile

setMultivalued(Boolean) - Method in class ome.model.meta.Namespace

setName(String) - Method in class ome.model.acquisition.StageLabel

setName(String) - Method in class ome.model.annotations.Annotation

setName(String) - Method in class ome.model.containers.Dataset

setName(String) - Method in class ome.model.containers.Folder

setName(String) - Method in class ome.model.containers.Project

setName(String) - Method in class ome.model.core.Image

setName(String) - Method in class ome.model.core.LogicalChannel

setName(String) - Method in class ome.model.core.OriginalFile

setName(String) - Method in class ome.model.display.RenderingDef

setName(String) - Method in class ome.model.internal.NamedValue

setName(String) - Method in class ome.model.meta.ExperimenterGroup

setName(String) - Method in class ome.model.meta.Namespace

setName(String) - Method in class ome.model.roi.Roi

setName(String) - Method in class ome.model.screen.Plate

setName(String) - Method in class ome.model.screen.PlateAcquisition

setName(String) - Method in class ome.model.screen.Reagent

setName(String) - Method in class ome.model.screen.Screen

setNdFilter(Double) - Method in class ome.model.core.LogicalChannel

setNode(Node) - Method in class ome.model.meta.Session

setNoiseReduction(Boolean) - Method in class ome.model.display.ChannelBinding

setNominalMagnification(Double) - Method in class ome.model.acquisition.Objective

setNs(String) - Method in class ome.model.annotations.Annotation

setObject(Object) - Method in class ome.util.MapPut

setObjective(Set<Objective>) - Method in class ome.model.acquisition.Instrument

setter for objective should be avoided.

setObjective(Objective) - Method in class ome.model.acquisition.ObjectiveSettings

setObjective(Objective) - Method in class ome.model.acquisition.OTF

setObjectiveSettings(ObjectiveSettings) - Method in class ome.model.core.Image

setOffsetValue(Double) - Method in class ome.model.acquisition.Detector

setOffsetValue(Double) - Method in class ome.model.acquisition.DetectorSettings

setOmeName(String) - Method in class ome.model.meta.Experimenter

setOpticalAxisAveraged(Boolean) - Method in class ome.model.acquisition.OTF

setOptions(Options) - Method in class ome.parameters.Parameters

setOrder(ByteOrder) - Method in class ome.util.PixelData

Set the byte order of the backing buffer.

setOriginalFile(OriginalFile) - Method in class ome.model.fs.FilesetEntry

setOriginalFileLinks(Set<JobOriginalFileLink>) - Method in class ome.model.jobs.Job

setter for originalFileLinks should be avoided.

setOriginalFileLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.jobs.Job

setOtf(Set<OTF>) - Method in class ome.model.acquisition.Instrument

setter for otf should be avoided.

setOtf(OTF) - Method in class ome.model.core.LogicalChannel

setOwner(Experimenter) - Method in interface ome.model.IDetails

setOwner(Experimenter) - Method in class ome.model.internal.Details

setOwner(Boolean) - Method in class ome.model.meta.GroupExperimenterMap

setOwner(Experimenter) - Method in class ome.model.meta.Session

setParameterValues(Properties) - Method in class ome.model.units.GenericEnumType

setParams(byte[]) - Method in class ome.model.jobs.ParseJob

setParent(IObject) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

setParent(IObject) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

setParent(IObject) - Method in class ome.model.acquisition.LightPathEmissionFilterLink

setParent(IObject) - Method in class ome.model.acquisition.LightPathExcitationFilterLink

setParent(IObject) - Method in class ome.model.annotations.AnnotationAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.ChannelAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.DatasetAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.DetectorAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.DichroicAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.ExperimenterAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.FilesetAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.FilterAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.FolderAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.ImageAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.InstrumentAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.LightPathAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.LightSourceAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.NamespaceAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.NodeAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.ObjectiveAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.OriginalFileAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.PlaneInfoAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.PlateAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.ProjectAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.ReagentAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.RoiAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.ScreenAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.SessionAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.ShapeAnnotationLink

setParent(IObject) - Method in class ome.model.annotations.WellAnnotationLink

setParent(IObject) - Method in class ome.model.containers.DatasetImageLink

setParent(IObject) - Method in class ome.model.containers.FolderImageLink

setParent(IObject) - Method in class ome.model.containers.FolderRoiLink

setParent(IObject) - Method in class ome.model.containers.ProjectDatasetLink

setParent(IObject) - Method in class ome.model.core.PixelsOriginalFileMap

setParent(IObject) - Method in class ome.model.fs.FilesetJobLink

setParent(IObject) - Method in interface ome.model.ILink

setParent(IObject) - Method in class ome.model.jobs.JobOriginalFileLink

setParent(IObject) - Method in class ome.model.meta.GroupExperimenterMap

setParent(IObject) - Method in class ome.model.meta.ShareMember

setParent(IObject) - Method in class ome.model.screen.ScreenPlateLink

setParent(IObject) - Method in class ome.model.screen.WellReagentLink

setParentFolder(Folder) - Method in class ome.model.containers.Folder

setPartial(Boolean) - Method in class ome.model.core.Image

setPath(String) - Method in class ome.model.acquisition.OTF

setPath(String) - Method in class ome.model.core.OriginalFile

setPerm1(long) - Method in class ome.model.internal.Permissions

setPermissions(Permissions) - Method in interface ome.model.IDetails

setPermissions(Permissions) - Method in class ome.model.internal.Details

setPermissionsBit(String, long, int) - Method in class ome.util.SqlAction.Impl

setPermissionsBit(String, long, int) - Method in interface ome.util.SqlAction

Sets the given permissions bit to 1.

setPhotometricInterpretation(PhotometricInterpretation) - Method in class ome.model.core.LogicalChannel

setPhysicalSizeX(Length) - Method in class ome.model.core.Pixels

setPhysicalSizeY(Length) - Method in class ome.model.core.Pixels

setPhysicalSizeZ(Length) - Method in class ome.model.core.Pixels

setPinHoleSize(Length) - Method in class ome.model.core.LogicalChannel

setPixels(Pixels) - Method in class ome.model.core.Channel

setPixels(List<Pixels>) - Method in class ome.model.core.Image

setter for pixels should be avoided.

setPixels(int, Pixels) - Method in class ome.model.core.Image

Sets the ome.model.core.Pixels at the given index.

setPixels(Pixels) - Method in class ome.model.core.PlaneInfo

setPixels(Pixels) - Method in class ome.model.display.RenderingDef

setPixels(Pixels) - Method in class ome.model.display.Thumbnail

setPixels(Pixels) - Method in class ome.model.roi.Mask

setPixelsFileMaps(Set<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile

setter for pixelsFileMaps should be avoided.

setPixelsFileMaps(Set<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels

setter for pixelsFileMaps should be avoided.

setPixelsFileMapsCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.OriginalFile

setPixelsFileMapsCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Pixels

setPixelsNamePathRepo(long, String, String, String) - Method in class ome.util.actions.PostgresSqlAction

setPixelsNamePathRepo(long, String, String, String) - Method in interface ome.util.SqlAction

setPixelsType(PixelsType) - Method in class ome.model.acquisition.OTF

setPixelsType(PixelsType) - Method in class ome.model.core.Pixels

setPixelValue(int, double) - Method in class ome.util.PixelData

Sets the pixel intensity value of the pixel at a given offset within the backing buffer.

setPixelValueDirect(int, double) - Method in class ome.util.PixelData

Sets the pixel intensity value of the pixel at a given offset within the backing buffer.

setPlaneInfo(Set<PlaneInfo>) - Method in class ome.model.core.Pixels

setter for planeInfo should be avoided.

setPlanePrevious(Integer) - Method in class ome.model.display.PlaneSlicingContext

setPlaneSelected(Integer) - Method in class ome.model.display.PlaneSlicingContext

setPlate(Plate) - Method in class ome.model.screen.PlateAcquisition

setPlate(Plate) - Method in class ome.model.screen.Well

setPlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.WellSample

setPlateAcquisitions(Set<PlateAcquisition>) - Method in class ome.model.screen.Plate

setter for plateAcquisitions should be avoided.

setPlateLinks(Set<ScreenPlateLink>) - Method in class ome.model.screen.Screen

setter for plateLinks should be avoided.

setPlateLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Screen

setPockelCell(Boolean) - Method in class ome.model.acquisition.Laser

setPockelCellSetting(Integer) - Method in class ome.model.core.LogicalChannel

setPoints(String) - Method in class ome.model.roi.Polygon

setPoints(String) - Method in class ome.model.roi.Polyline

setPositionX(Length) - Method in class ome.model.acquisition.StageLabel

setPositionX(Length) - Method in class ome.model.core.PlaneInfo

setPositionY(Length) - Method in class ome.model.acquisition.StageLabel

setPositionY(Length) - Method in class ome.model.core.PlaneInfo

setPositionZ(Length) - Method in class ome.model.acquisition.StageLabel

setPositionZ(Length) - Method in class ome.model.core.PlaneInfo

setPosX(Length) - Method in class ome.model.screen.WellSample

setPosY(Length) - Method in class ome.model.screen.WellSample

setPower(Power) - Method in class ome.model.acquisition.LightSource

setPreviousPatch(Integer) - Method in class ome.model.meta.DBPatch

setPreviousVersion(String) - Method in class ome.model.meta.DBPatch

setPrimaryChannel(Channel) - Method in class ome.model.core.Pixels

Swaps the first element of channels with the first instance of the given element.

setPrimaryChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef

Swaps the first element of waveRendering with the first instance of the given element.

setPrimaryCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding

Swaps the first element of spatialDomainEnhancement with the first instance of the given element.

setPrimaryFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset

Swaps the first element of usedFiles with the first instance of the given element.

setPrimaryFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset

Swaps the first element of jobLinks with the first instance of the given element.

setPrimaryGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter

Swaps the first element of groupExperimenterMap with the first instance of the given element.

setPrimaryLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath

Swaps the first element of excitationFilterLink with the first instance of the given element.

setPrimaryPixels(Pixels) - Method in class ome.model.core.Image

Swaps the first element of pixels with the first instance of the given element.

setPrimaryProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef

Swaps the first element of projections with the first instance of the given element.

setPrimaryShape(Shape) - Method in class ome.model.roi.Roi

Swaps the first element of shapes with the first instance of the given element.

setPrimaryWellSample(WellSample) - Method in class ome.model.screen.Well

Swaps the first element of wellSamples with the first instance of the given element.

setProjectionDef(int, ProjectionDef) - Method in class ome.model.display.RenderingDef

Sets the ome.model.display.ProjectionDef at the given index.

setProjections(List<ProjectionDef>) - Method in class ome.model.display.RenderingDef

setter for projections should be avoided.

setProjectLinks(Set<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset

setter for projectLinks should be avoided.

setProjectLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Dataset

setProtocolDescription(String) - Method in class ome.model.screen.Screen

setProtocolIdentifier(String) - Method in class ome.model.screen.Screen

setPulse(Pulse) - Method in class ome.model.acquisition.Laser

setPump(LightSource) - Method in class ome.model.acquisition.Laser

setQuantization(QuantumDef) - Method in class ome.model.display.RenderingDef

setRadiusX(Double) - Method in class ome.model.roi.Ellipse

setRadiusY(Double) - Method in class ome.model.roi.Ellipse

setReadOutRate(Frequency) - Method in class ome.model.acquisition.DetectorSettings

setReagentIdentifier(String) - Method in class ome.model.screen.Reagent

setReagentLinks(Set<WellReagentLink>) - Method in class ome.model.screen.Well

setter for reagentLinks should be avoided.

setReagentLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Well

setReagents(Set<Reagent>) - Method in class ome.model.screen.Screen

setter for reagents should be avoided.

setReagentSetDescription(String) - Method in class ome.model.screen.Screen

setReagentSetIdentifier(String) - Method in class ome.model.screen.Screen

setRed(Integer) - Method in class ome.model.core.Channel

setRed(Integer) - Method in class ome.model.display.ChannelBinding

setRed(Integer) - Method in class ome.model.screen.Well

setRef(String) - Method in class ome.model.display.Thumbnail

setRefractiveIndex(Double) - Method in class ome.model.acquisition.ObjectiveSettings

setRelatedTo(Pixels) - Method in class ome.model.core.Pixels

Deprecated.

setRenderingDef(RenderingDef) - Method in class ome.model.display.ChannelBinding

setRenderingDef(RenderingDef) - Method in class ome.model.display.ProjectionDef

setRepetitionRate(Frequency) - Method in class ome.model.acquisition.Laser

setReplacement(IObject) - Method in class ome.model.internal.GraphHolder

used mostly by ome.api.IUpdate.

setRepo(String) - Method in class ome.model.core.OriginalFile

setReverse(Boolean) - Method in class ome.model.display.ReverseIntensityContext

setRoi(Roi) - Method in class ome.model.roi.Shape

setRoiLinks(Set<FolderRoiLink>) - Method in class ome.model.containers.Folder

setter for roiLinks should be avoided.

setRoiLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Folder

setRois(Set<Roi>) - Method in class ome.model.core.Image

setter for rois should be avoided.

setRoles(long, long, long, long, long) - Method in class ome.util.SqlAction.Impl

setRoles(long, long, long, long, long) - Method in interface ome.util.SqlAction

Note the roles in the database.

setRow(Integer) - Method in class ome.model.screen.Well

setRowNamingConvention(String) - Method in class ome.model.screen.Plate

setRows(Integer) - Method in class ome.model.screen.Plate

setSamplesPerPixel(Integer) - Method in class ome.model.core.LogicalChannel

setScale(Integer) - Method in class ome.model.meta.Node

setScheduledFor(Timestamp) - Method in class ome.model.jobs.Job

setScreen(Screen) - Method in class ome.model.screen.Reagent

setScreenLinks(Set<ScreenPlateLink>) - Method in class ome.model.screen.Plate

setter for screenLinks should be avoided.

setScreenLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Plate

setSerialNumber(String) - Method in class ome.model.acquisition.Detector

setSerialNumber(String) - Method in class ome.model.acquisition.Dichroic

setSerialNumber(String) - Method in class ome.model.acquisition.Filter

setSerialNumber(String) - Method in class ome.model.acquisition.FilterSet

setSerialNumber(String) - Method in class ome.model.acquisition.LightSource

setSerialNumber(String) - Method in class ome.model.acquisition.Microscope

setSerialNumber(String) - Method in class ome.model.acquisition.Objective

setSeries(Integer) - Method in class ome.model.core.Image

setSession(Session) - Method in class ome.model.meta.Event

setSessions(Set<Session>) - Method in class ome.model.meta.Node

setter for sessions should be avoided.

setSettings(Set<RenderingDef>) - Method in class ome.model.core.Pixels

setter for settings should be avoided.

setSha1(String) - Method in class ome.model.core.Pixels

setShape(int, Shape) - Method in class ome.model.roi.Roi

Sets the ome.model.roi.Shape at the given index.

setShapes(List<Shape>) - Method in class ome.model.roi.Roi

setter for shapes should be avoided.

setSignificantBits(Integer) - Method in class ome.model.core.Pixels

setSize(Long) - Method in class ome.model.core.OriginalFile

setSizeC(Integer) - Method in class ome.model.core.Pixels

setSizeT(Integer) - Method in class ome.model.core.Pixels

setSizeX(Integer) - Method in class ome.model.acquisition.OTF

setSizeX(Integer) - Method in class ome.model.core.Pixels

setSizeX(Integer) - Method in class ome.model.display.Thumbnail

setSizeY(Integer) - Method in class ome.model.acquisition.OTF

setSizeY(Integer) - Method in class ome.model.core.Pixels

setSizeY(Integer) - Method in class ome.model.display.Thumbnail

setSizeZ(Integer) - Method in class ome.model.core.Pixels

setSource(OriginalFile) - Method in class ome.model.roi.Roi

setSpatialDomainEnhancement(List<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding

setter for spatialDomainEnhancement should be avoided.

setSqlAction(SqlAction) - Method in class ome.util.TableIdGenerator

setStageLabel(StageLabel) - Method in class ome.model.core.Image

setStarted(Timestamp) - Method in class ome.model.jobs.Job

setStarted(Timestamp) - Method in class ome.model.meta.Session

setStartPlane(Integer) - Method in class ome.model.display.ProjectionDef

setStartTime(Timestamp) - Method in class ome.model.screen.PlateAcquisition

setStatsInfo(StatsInfo) - Method in class ome.model.core.Channel

setStatsInfo(Channel, StatsInfo) - Method in class ome.util.SqlAction.Impl

setStatsInfo(Channel, StatsInfo) - Method in interface ome.util.SqlAction

setStatus(JobStatus) - Method in class ome.model.jobs.Job

setStatus(String) - Method in class ome.model.meta.Event

setStatus(String) - Method in class ome.model.screen.Plate

setStatus(String) - Method in class ome.model.screen.Well

setStepping(Integer) - Method in class ome.model.display.ProjectionDef

setStrokeColor(Integer) - Method in class ome.model.roi.Shape

setStrokeDashArray(String) - Method in class ome.model.roi.Shape

setStrokeWidth(Length) - Method in class ome.model.roi.Shape

setSubmitted(Timestamp) - Method in class ome.model.jobs.Job

setSudoer(Experimenter) - Method in class ome.model.meta.Session

setTemperature(Temperature) - Method in class ome.model.acquisition.ImagingEnvironment

setTemplatePrefix(String) - Method in class ome.model.fs.Fileset

setTermValue(String) - Method in class ome.model.annotations.TermAnnotation

setTextValue(String) - Method in class ome.model.annotations.TextAnnotation

setTextValue(String) - Method in class ome.model.roi.Ellipse

setTextValue(String) - Method in class ome.model.roi.Label

setTextValue(String) - Method in class ome.model.roi.Line

setTextValue(String) - Method in class ome.model.roi.Mask

setTextValue(String) - Method in class ome.model.roi.Path

Deprecated.

setTextValue(String) - Method in class ome.model.roi.Point

setTextValue(String) - Method in class ome.model.roi.Polygon

setTextValue(String) - Method in class ome.model.roi.Polyline

setTextValue(String) - Method in class ome.model.roi.Rectangle

setTheC(Integer) - Method in class ome.model.core.PlaneInfo

setTheC(Integer) - Method in class ome.model.roi.Shape

setTheT(Integer) - Method in class ome.model.core.PlaneInfo

setTheT(Integer) - Method in class ome.model.roi.Shape

setTheZ(Integer) - Method in class ome.model.core.PlaneInfo

setTheZ(Integer) - Method in class ome.model.roi.Shape

setThumbnails(Set<Thumbnail>) - Method in class ome.model.core.Pixels

setter for thumbnails should be avoided.

setTime(Timestamp) - Method in class ome.model.meta.Event

setTimeIncrement(Time) - Method in class ome.model.core.Pixels

setTimepoint(Timestamp) - Method in class ome.model.screen.WellSample

setTimeToIdle(Long) - Method in class ome.model.meta.Session

setTimeToLive(Long) - Method in class ome.model.meta.Session

setTimeValue(Timestamp) - Method in class ome.model.annotations.TimestampAnnotation

settings - Variable in class ome.model.core.Pixels

SETTINGS - Static variable in class ome.model.core.Pixels

setToken(Token, Token) - Method in class ome.model.internal.GraphHolder

set the Token for this GraphHolder but only if you posses the current Token.

setTransform(AffineTransform) - Method in class ome.model.roi.Shape

setTransmittance(Double) - Method in class ome.model.acquisition.TransmittanceRange

setTransmittanceRange(TransmittanceRange) - Method in class ome.model.acquisition.Filter

setTuneable(Boolean) - Method in class ome.model.acquisition.Laser

setType(ArcType) - Method in class ome.model.acquisition.Arc

setType(DetectorType) - Method in class ome.model.acquisition.Detector

setType(FilamentType) - Method in class ome.model.acquisition.Filament

setType(FilterType) - Method in class ome.model.acquisition.Filter

setType(LaserType) - Method in class ome.model.acquisition.Laser

setType(MicroscopeType) - Method in class ome.model.acquisition.Microscope

setType(ProjectionType) - Method in class ome.model.display.ProjectionDef

setType(ExperimentType) - Method in class ome.model.experiment.Experiment

setType(MicrobeamManipulationType) - Method in class ome.model.experiment.MicrobeamManipulation

setType(String) - Method in class ome.model.jobs.Job

setType(EventType) - Method in class ome.model.meta.Event

setType(String) - Method in class ome.model.screen.Screen

setType(String) - Method in class ome.model.screen.Well

setUnit(UnitsElectricPotential) - Method in class ome.model.units.ElectricPotential

setUnit(UnitsFrequency) - Method in class ome.model.units.Frequency

setUnit(UnitsLength) - Method in class ome.model.units.Length

setUnit(UnitsPower) - Method in class ome.model.units.Power

setUnit(UnitsPressure) - Method in class ome.model.units.Pressure

setUnit(UnitsTemperature) - Method in class ome.model.units.Temperature

setUnit(UnitsTime) - Method in class ome.model.units.Time

setUp(Timestamp) - Method in class ome.model.meta.Node

setUpdateEvent(Event) - Method in class ome.model.internal.Details

setUpdateEvent(Event) - Method in class ome.model.meta.ExternalInfo.Details

setUpperLimit(Integer) - Method in class ome.model.display.PlaneSlicingContext

setUsedFiles(List<FilesetEntry>) - Method in class ome.model.fs.Fileset

setter for usedFiles should be avoided.

setUserAgent(String) - Method in class ome.model.meta.Session

setUserIP(String) - Method in class ome.model.meta.Session

Deprecated.

setUsername(String) - Method in class ome.model.jobs.Job

setUserPassword(Long, String) - Method in class ome.util.SqlAction.Impl

setUserPassword(Long, String) - Method in interface ome.util.SqlAction

setUuid(String) - Method in class ome.model.meta.ExternalInfo

setUuid(String) - Method in class ome.model.meta.Node

setUuid(String) - Method in class ome.model.meta.Session

setValue(String) - Method in class ome.model.enums.AcquisitionMode

setValue(String) - Method in class ome.model.enums.AdminPrivilege

setValue(String) - Method in class ome.model.enums.ArcType

setValue(String) - Method in class ome.model.enums.Binning

setValue(String) - Method in class ome.model.enums.ChecksumAlgorithm

setValue(String) - Method in class ome.model.enums.ContrastMethod

setValue(String) - Method in class ome.model.enums.Correction

setValue(String) - Method in class ome.model.enums.DetectorType

setValue(String) - Method in class ome.model.enums.DimensionOrder

setValue(String) - Method in class ome.model.enums.EventType

setValue(String) - Method in class ome.model.enums.ExperimentType

setValue(String) - Method in class ome.model.enums.Family

setValue(String) - Method in class ome.model.enums.FilamentType

setValue(String) - Method in class ome.model.enums.FilterType

setValue(String) - Method in class ome.model.enums.Format

setValue(String) - Method in class ome.model.enums.Illumination

setValue(String) - Method in class ome.model.enums.Immersion

setValue(String) - Method in class ome.model.enums.LaserMedium

setValue(String) - Method in class ome.model.enums.LaserType

setValue(String) - Method in class ome.model.enums.Medium

setValue(String) - Method in class ome.model.enums.MicrobeamManipulationType

setValue(String) - Method in class ome.model.enums.MicroscopeType

setValue(String) - Method in class ome.model.enums.PhotometricInterpretation

setValue(String) - Method in class ome.model.enums.PixelsType

setValue(String) - Method in class ome.model.enums.ProjectionAxis

setValue(String) - Method in class ome.model.enums.ProjectionType

setValue(String) - Method in class ome.model.enums.Pulse

setValue(String) - Method in class ome.model.enums.RenderingModel

setValue(String) - Method in class ome.model.internal.NamedValue

setValue(String) - Method in class ome.model.jobs.JobStatus

setValue(double) - Method in class ome.model.units.ElectricPotential

setValue(double) - Method in class ome.model.units.Frequency

setValue(double) - Method in class ome.model.units.Length

setValue(double) - Method in class ome.model.units.Power

setValue(double) - Method in class ome.model.units.Pressure

setValue(double) - Method in class ome.model.units.Temperature

setValue(double) - Method in class ome.model.units.Time

setValue(double) - Method in interface ome.model.units.Unit

setVersion(Integer) - Method in class ome.model.acquisition.Detector

setVersion(Integer) - Method in class ome.model.acquisition.DetectorSettings

setVersion(Integer) - Method in class ome.model.acquisition.Dichroic

setVersion(Integer) - Method in class ome.model.acquisition.Filter

setVersion(Integer) - Method in class ome.model.acquisition.FilterSet

setVersion(Integer) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

setVersion(Integer) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

setVersion(Integer) - Method in class ome.model.acquisition.ImagingEnvironment

setVersion(Integer) - Method in class ome.model.acquisition.Instrument

setVersion(Integer) - Method in class ome.model.acquisition.LightPath

setVersion(Integer) - Method in class ome.model.acquisition.LightPathEmissionFilterLink

setVersion(Integer) - Method in class ome.model.acquisition.LightPathExcitationFilterLink

setVersion(Integer) - Method in class ome.model.acquisition.LightSettings

setVersion(Integer) - Method in class ome.model.acquisition.LightSource

setVersion(Integer) - Method in class ome.model.acquisition.Microscope

setVersion(Integer) - Method in class ome.model.acquisition.Objective

setVersion(Integer) - Method in class ome.model.acquisition.ObjectiveSettings

setVersion(Integer) - Method in class ome.model.acquisition.OTF

setVersion(Integer) - Method in class ome.model.acquisition.StageLabel

setVersion(Integer) - Method in class ome.model.acquisition.TransmittanceRange

setVersion(Integer) - Method in class ome.model.annotations.Annotation

setVersion(Integer) - Method in class ome.model.annotations.AnnotationAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.ChannelAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.DatasetAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.DetectorAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.DichroicAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.ExperimenterAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.FilesetAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.FilterAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.FolderAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.ImageAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.InstrumentAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.LightPathAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.LightSourceAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.NamespaceAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.NodeAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.ObjectiveAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.OriginalFileAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.PlaneInfoAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.PlateAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.ProjectAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.ReagentAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.RoiAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.ScreenAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.SessionAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.ShapeAnnotationLink

setVersion(Integer) - Method in class ome.model.annotations.WellAnnotationLink

setVersion(Integer) - Method in class ome.model.containers.Dataset

setVersion(Integer) - Method in class ome.model.containers.DatasetImageLink

setVersion(Integer) - Method in class ome.model.containers.Folder

setVersion(Integer) - Method in class ome.model.containers.FolderImageLink

setVersion(Integer) - Method in class ome.model.containers.FolderRoiLink

setVersion(Integer) - Method in class ome.model.containers.Project

setVersion(Integer) - Method in class ome.model.containers.ProjectDatasetLink

setVersion(Integer) - Method in class ome.model.core.Channel

setVersion(Integer) - Method in class ome.model.core.Image

setVersion(Integer) - Method in class ome.model.core.LogicalChannel

setVersion(Integer) - Method in class ome.model.core.OriginalFile

setVersion(Integer) - Method in class ome.model.core.Pixels

setVersion(Integer) - Method in class ome.model.core.PixelsOriginalFileMap

setVersion(Integer) - Method in class ome.model.core.PlaneInfo

setVersion(Integer) - Method in class ome.model.display.ChannelBinding

setVersion(Integer) - Method in class ome.model.display.CodomainMapContext

setVersion(Integer) - Method in class ome.model.display.ProjectionDef

setVersion(Integer) - Method in class ome.model.display.QuantumDef

setVersion(Integer) - Method in class ome.model.display.RenderingDef

setVersion(Integer) - Method in class ome.model.display.Thumbnail

setVersion(Integer) - Method in class ome.model.experiment.Experiment

setVersion(Integer) - Method in class ome.model.experiment.MicrobeamManipulation

setVersion(Integer) - Method in class ome.model.fs.Fileset

setVersion(Integer) - Method in class ome.model.fs.FilesetEntry

setVersion(Integer) - Method in class ome.model.fs.FilesetJobLink

setVersion(Integer) - Method in interface ome.model.IMutable

use with caution.

setVersion(Integer) - Method in class ome.model.internal.Link

setVersion(Integer) - Method in class ome.model.jobs.Job

setVersion(Integer) - Method in class ome.model.jobs.JobOriginalFileLink

setVersion(Integer) - Method in class ome.model.meta.Experimenter

setVersion(Integer) - Method in class ome.model.meta.ExperimenterGroup

setVersion(Integer) - Method in class ome.model.meta.GroupExperimenterMap

setVersion(Integer) - Method in class ome.model.meta.Namespace

setVersion(Integer) - Method in class ome.model.meta.Node

setVersion(Integer) - Method in class ome.model.meta.Session

setVersion(Integer) - Method in class ome.model.meta.ShareMember

setVersion(Integer) - Method in class ome.model.roi.AffineTransform

setVersion(Integer) - Method in class ome.model.roi.Roi

setVersion(Integer) - Method in class ome.model.roi.Shape

setVersion(Integer) - Method in class ome.model.screen.Plate

setVersion(Integer) - Method in class ome.model.screen.PlateAcquisition

setVersion(Integer) - Method in class ome.model.screen.Reagent

setVersion(Integer) - Method in class ome.model.screen.Screen

setVersion(Integer) - Method in class ome.model.screen.ScreenPlateLink

setVersion(Integer) - Method in class ome.model.screen.Well

setVersion(Integer) - Method in class ome.model.screen.WellReagentLink

setVersion(Integer) - Method in class ome.model.screen.WellSample

setVersion(Integer) - Method in class ome.model.stats.StatsInfo

setVersionInfo(List<NamedValue>) - Method in class ome.model.jobs.MetadataImportJob

setVersionInfo(List<NamedValue>) - Method in class ome.model.jobs.UploadJob

setVoltage(ElectricPotential) - Method in class ome.model.acquisition.Detector

setVoltage(ElectricPotential) - Method in class ome.model.acquisition.DetectorSettings

setWaveIncrement(Integer) - Method in class ome.model.core.Pixels

setWavelength(Length) - Method in class ome.model.acquisition.Laser

setWavelength(Length) - Method in class ome.model.acquisition.LightSettings

setWaveRendering(List<ChannelBinding>) - Method in class ome.model.display.RenderingDef

setter for waveRendering should be avoided.

setWaveStart(Integer) - Method in class ome.model.core.Pixels

setWell(Well) - Method in class ome.model.screen.WellSample

setWellLinks(Set<WellReagentLink>) - Method in class ome.model.screen.Reagent

setter for wellLinks should be avoided.

setWellLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Reagent

setWellOriginX(Length) - Method in class ome.model.screen.Plate

setWellOriginY(Length) - Method in class ome.model.screen.Plate

setWells(Set<Well>) - Method in class ome.model.screen.Plate

setter for wells should be avoided.

setWellSample(Set<WellSample>) - Method in class ome.model.screen.PlateAcquisition

setter for wellSample should be avoided.

setWellSample(int, WellSample) - Method in class ome.model.screen.Well

Sets the ome.model.screen.WellSample at the given index.

setWellSamples(Set<WellSample>) - Method in class ome.model.core.Image

setter for wellSamples should be avoided.

setWellSamples(List<WellSample>) - Method in class ome.model.screen.Well

setter for wellSamples should be avoided.

setWidth(Double) - Method in class ome.model.roi.Mask

setWidth(Double) - Method in class ome.model.roi.Rectangle

setWorkingDistance(Length) - Method in class ome.model.acquisition.Objective

setX(Double) - Method in class ome.model.roi.Ellipse

setX(Double) - Method in class ome.model.roi.Label

setX(Double) - Method in class ome.model.roi.Mask

setX(Double) - Method in class ome.model.roi.Point

setX(Double) - Method in class ome.model.roi.Rectangle

setX1(Double) - Method in class ome.model.roi.Line

setX2(Double) - Method in class ome.model.roi.Line

setXend(Integer) - Method in class ome.model.display.ContrastStretchingContext

setXstart(Integer) - Method in class ome.model.display.ContrastStretchingContext

setY(Double) - Method in class ome.model.roi.Ellipse

setY(Double) - Method in class ome.model.roi.Label

setY(Double) - Method in class ome.model.roi.Mask

setY(Double) - Method in class ome.model.roi.Point

setY(Double) - Method in class ome.model.roi.Rectangle

setY1(Double) - Method in class ome.model.roi.Line

setY2(Double) - Method in class ome.model.roi.Line

setYend(Integer) - Method in class ome.model.display.ContrastStretchingContext

setYstart(Integer) - Method in class ome.model.display.ContrastStretchingContext

setZoom(Double) - Method in class ome.model.acquisition.Detector

setZoom(Double) - Method in class ome.model.acquisition.DetectorSettings

sha1 - Variable in class ome.model.core.Pixels

SHA1 - Static variable in class ome.model.core.Pixels

shallowCopy() - Method in class ome.model.internal.Details

shallowCopy(Details) - Method in class ome.model.internal.Details

Method which takes all the fields of the given Details instance and sets unloaded proxies of them into the current instance.

ShallowCopy - Class in ome.util

ShallowCopy() - Constructor for class ome.util.ShallowCopy

Shape - Class in ome.model.roi

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Shape() - Constructor for class ome.model.roi.Shape

Shape(Long) - Constructor for class ome.model.roi.Shape

Shape(Long, boolean) - Constructor for class ome.model.roi.Shape

Main constructor.

Shape(Roi) - Constructor for class ome.model.roi.Shape

Shape.Details - Class in ome.model.roi

ShapeAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

ShapeAnnotationLink() - Constructor for class ome.model.annotations.ShapeAnnotationLink

ShapeAnnotationLink(Long) - Constructor for class ome.model.annotations.ShapeAnnotationLink

ShapeAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ShapeAnnotationLink

Main constructor.

ShapeAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ShapeAnnotationLink

ShapeAnnotationLink.Details - Class in ome.model.annotations

shapes - Variable in class ome.model.roi.Roi

SHAPES - Static variable in class ome.model.roi.Roi

Share - Class in ome.model.meta

Share() - Constructor for class ome.model.meta.Share

Share(Long) - Constructor for class ome.model.meta.Share

Share(Long, boolean) - Constructor for class ome.model.meta.Share

Main constructor.

Share(ExperimenterGroup, Long, Boolean, byte[]) - Constructor for class ome.model.meta.Share

ShareMember - Class in ome.model.meta

ShareMember() - Constructor for class ome.model.meta.ShareMember

ShareMember(Long) - Constructor for class ome.model.meta.ShareMember

ShareMember(Long, boolean) - Constructor for class ome.model.meta.ShareMember

Main constructor.

ShareMember(IObject, IObject) - Constructor for class ome.model.meta.ShareMember

ShareMember.Details - Class in ome.model.meta

SHORT - Static variable in class ome.util.PixelData

Identifies the type used to store pixel values.

significantBits - Variable in class ome.model.core.Pixels

SIGNIFICANTBITS - Static variable in class ome.model.core.Pixels

singleBitOn(Permissions.Role, Permissions.Right) - Static method in class ome.model.internal.Permissions

returns a long with only a single 1 defined by role/right

singleBitOut(Permissions.Role, Permissions.Right) - Static method in class ome.model.internal.Permissions

returns a long with only a single 0 defined by role/right

size - Variable in class ome.model.core.OriginalFile

SIZE - Static variable in class ome.model.core.OriginalFile

size() - Method in class ome.util.PixelData

Returns the pixel count of this block of pixel data.

sizeC - Variable in class ome.model.core.Pixels

SIZEC - Static variable in class ome.model.core.Pixels

sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Detector

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Dichroic

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Filter

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Instrument

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.acquisition.LightPath

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.acquisition.LightSource

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Objective

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.annotations.Annotation

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.containers.Dataset

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.containers.Folder

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.containers.Project

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.core.Channel

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.core.Image

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.core.OriginalFile

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.core.PlaneInfo

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.fs.Fileset

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in interface ome.model.IAnnotated

sizeOfAnnotationLinks() - Method in class ome.model.meta.Experimenter

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.meta.Namespace

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.meta.Node

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.meta.Session

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.roi.Roi

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.roi.Shape

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.screen.Plate

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.screen.Reagent

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.screen.Screen

returns the size of annotationLinks.

sizeOfAnnotationLinks() - Method in class ome.model.screen.Well

returns the size of annotationLinks.

sizeOfChannels() - Method in class ome.model.core.LogicalChannel

returns the size of channels.

sizeOfChannels() - Method in class ome.model.core.Pixels

returns the size of channels.

sizeOfChildFolders() - Method in class ome.model.containers.Folder

returns the size of childFolders.

sizeOfDatasetLinks() - Method in class ome.model.containers.Project

returns the size of datasetLinks.

sizeOfDatasetLinks() - Method in class ome.model.core.Image

returns the size of datasetLinks.

sizeOfDetector() - Method in class ome.model.acquisition.Instrument

returns the size of detector.

sizeOfDichroic() - Method in class ome.model.acquisition.Instrument

returns the size of dichroic.

sizeOfEmissionFilterLink() - Method in class ome.model.acquisition.Filter

returns the size of emissionFilterLink.

sizeOfEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet

returns the size of emissionFilterLink.

sizeOfEmissionFilterLink() - Method in class ome.model.acquisition.LightPath

returns the size of emissionFilterLink.

sizeOfEvents() - Method in class ome.model.meta.Session

returns the size of events.

sizeOfExcitationFilterLink() - Method in class ome.model.acquisition.Filter

returns the size of excitationFilterLink.

sizeOfExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet

returns the size of excitationFilterLink.

sizeOfExcitationFilterLink() - Method in class ome.model.acquisition.LightPath

returns the size of excitationFilterLink.

sizeOfFilesetEntries() - Method in class ome.model.core.OriginalFile

returns the size of filesetEntries.

sizeOfFilter() - Method in class ome.model.acquisition.Instrument

returns the size of filter.

sizeOfFilterSet() - Method in class ome.model.acquisition.Instrument

returns the size of filterSet.

sizeOfFolderLinks() - Method in class ome.model.core.Image

returns the size of folderLinks.

sizeOfFolderLinks() - Method in class ome.model.roi.Roi

returns the size of folderLinks.

sizeOfGroupExperimenterMap() - Method in class ome.model.meta.Experimenter

returns the size of groupExperimenterMap.

sizeOfGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup

returns the size of groupExperimenterMap.

sizeOfImageLinks() - Method in class ome.model.containers.Dataset

returns the size of imageLinks.

sizeOfImageLinks() - Method in class ome.model.containers.Folder

returns the size of imageLinks.

sizeOfImages() - Method in class ome.model.fs.Fileset

returns the size of images.

sizeOfJobLinks() - Method in class ome.model.fs.Fileset

returns the size of jobLinks.

sizeOfLightSource() - Method in class ome.model.acquisition.Instrument

returns the size of lightSource.

sizeOfLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation

returns the size of lightSourceSettings.

sizeOfLogs() - Method in class ome.model.meta.Event

returns the size of logs.

sizeOfMicrobeamManipulation() - Method in class ome.model.experiment.Experiment

returns the size of microbeamManipulation.

sizeOfObjective() - Method in class ome.model.acquisition.Instrument

returns the size of objective.

sizeOfOriginalFileLinks() - Method in class ome.model.jobs.Job

returns the size of originalFileLinks.

sizeOfOtf() - Method in class ome.model.acquisition.Instrument

returns the size of otf.

sizeOfPixels() - Method in class ome.model.core.Image

returns the size of pixels.

sizeOfPixelsFileMaps() - Method in class ome.model.core.OriginalFile

returns the size of pixelsFileMaps.

sizeOfPixelsFileMaps() - Method in class ome.model.core.Pixels

returns the size of pixelsFileMaps.

sizeOfPlaneInfo() - Method in class ome.model.core.Pixels

returns the size of planeInfo.

sizeOfPlateAcquisitions() - Method in class ome.model.screen.Plate

returns the size of plateAcquisitions.

sizeOfPlateLinks() - Method in class ome.model.screen.Screen

returns the size of plateLinks.

sizeOfProjections() - Method in class ome.model.display.RenderingDef

returns the size of projections.

sizeOfProjectLinks() - Method in class ome.model.containers.Dataset

returns the size of projectLinks.

sizeOfReagentLinks() - Method in class ome.model.screen.Well

returns the size of reagentLinks.

sizeOfReagents() - Method in class ome.model.screen.Screen

returns the size of reagents.

sizeOfRoiLinks() - Method in class ome.model.containers.Folder

returns the size of roiLinks.

sizeOfRois() - Method in class ome.model.core.Image

returns the size of rois.

sizeOfScreenLinks() - Method in class ome.model.screen.Plate

returns the size of screenLinks.

sizeOfSessions() - Method in class ome.model.meta.Node

returns the size of sessions.

sizeOfSettings() - Method in class ome.model.core.Pixels

returns the size of settings.

sizeOfShapes() - Method in class ome.model.roi.Roi

returns the size of shapes.

sizeOfSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding

returns the size of spatialDomainEnhancement.

sizeOfThumbnails() - Method in class ome.model.core.Pixels

returns the size of thumbnails.

sizeOfUsedFiles() - Method in class ome.model.fs.Fileset

returns the size of usedFiles.

sizeOfWaveRendering() - Method in class ome.model.display.RenderingDef

returns the size of waveRendering.

sizeOfWellLinks() - Method in class ome.model.screen.Reagent

returns the size of wellLinks.

sizeOfWells() - Method in class ome.model.screen.Plate

returns the size of wells.

sizeOfWellSample() - Method in class ome.model.screen.PlateAcquisition

returns the size of wellSample.

sizeOfWellSamples() - Method in class ome.model.core.Image

returns the size of wellSamples.

sizeOfWellSamples() - Method in class ome.model.screen.Well

returns the size of wellSamples.

sizeT - Variable in class ome.model.core.Pixels

SIZET - Static variable in class ome.model.core.Pixels

sizeX - Variable in class ome.model.acquisition.OTF

SIZEX - Static variable in class ome.model.acquisition.OTF

sizeX - Variable in class ome.model.core.Pixels

SIZEX - Static variable in class ome.model.core.Pixels

sizeX - Variable in class ome.model.display.Thumbnail

SIZEX - Static variable in class ome.model.display.Thumbnail

sizeY - Variable in class ome.model.acquisition.OTF

SIZEY - Static variable in class ome.model.acquisition.OTF

sizeY - Variable in class ome.model.core.Pixels

SIZEY - Static variable in class ome.model.core.Pixels

sizeY - Variable in class ome.model.display.Thumbnail

SIZEY - Static variable in class ome.model.display.Thumbnail

sizeZ - Variable in class ome.model.core.Pixels

SIZEZ - Static variable in class ome.model.core.Pixels

source - Variable in class ome.model.roi.Roi

SOURCE - Static variable in class ome.model.roi.Roi

spatialDomainEnhancement - Variable in class ome.model.display.ChannelBinding

SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding

SqlAction - Interface in ome.util

Single wrapper for all JDBC activities.

SqlAction.DeleteLog - Class in ome.util

Record-class which matches _fs_deletelog.

SqlAction.IdRowMapper - Class in ome.util

SqlAction.Impl - Class in ome.util

Base implementation which can be used

SqlAction.LoggingSqlAction - Class in ome.util

SqlAction.StringRowMapper - Class in ome.util

sqlTypes() - Method in class ome.model.units.GenericEnumType

stackAsString(Throwable) - Static method in class ome.util.ModelMapper

StageLabel - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

StageLabel() - Constructor for class ome.model.acquisition.StageLabel

StageLabel(Long) - Constructor for class ome.model.acquisition.StageLabel

StageLabel(Long, boolean) - Constructor for class ome.model.acquisition.StageLabel

Main constructor.

StageLabel(String) - Constructor for class ome.model.acquisition.StageLabel

stageLabel - Variable in class ome.model.core.Image

STAGELABEL - Static variable in class ome.model.core.Image

StageLabel.Details - Class in ome.model.acquisition

started - Variable in class ome.model.jobs.Job

STARTED - Static variable in class ome.model.jobs.Job

started - Variable in class ome.model.meta.Session

STARTED - Static variable in class ome.model.meta.Session

startPlane - Variable in class ome.model.display.ProjectionDef

STARTPLANE - Static variable in class ome.model.display.ProjectionDef

startTime - Variable in class ome.model.screen.PlateAcquisition

STARTTIME - Static variable in class ome.model.screen.PlateAcquisition

startTime - Variable in class ome.parameters.Filter

startTime(Timestamp) - Method in class ome.parameters.Parameters

statsInfo - Variable in class ome.model.core.Channel

STATSINFO - Static variable in class ome.model.core.Channel

StatsInfo - Class in ome.model.stats

These filter definitions are used by the security system to eliminate non-readable objects from queries.

StatsInfo() - Constructor for class ome.model.stats.StatsInfo

StatsInfo(Long) - Constructor for class ome.model.stats.StatsInfo

StatsInfo(Long, boolean) - Constructor for class ome.model.stats.StatsInfo

Main constructor.

StatsInfo(Double, Double) - Constructor for class ome.model.stats.StatsInfo

StatsInfo.Details - Class in ome.model.stats

status - Variable in class ome.model.jobs.Job

STATUS - Static variable in class ome.model.jobs.Job

status - Variable in class ome.model.meta.Event

STATUS - Static variable in class ome.model.meta.Event

status - Variable in class ome.model.screen.Plate

STATUS - Static variable in class ome.model.screen.Plate

status - Variable in class ome.model.screen.Well

STATUS - Static variable in class ome.model.screen.Well

stepping - Variable in class ome.model.display.ProjectionDef

STEPPING - Static variable in class ome.model.display.ProjectionDef

StringRowMapper() - Constructor for class ome.util.SqlAction.StringRowMapper

stringToObject(String) - Method in class ome.util.PrivilegedStringType

strokeColor - Variable in class ome.model.roi.Shape

STROKECOLOR - Static variable in class ome.model.roi.Shape

strokeDashArray - Variable in class ome.model.roi.Shape

STROKEDASHARRAY - Static variable in class ome.model.roi.Shape

strokeWidth - Variable in class ome.model.roi.Shape

STROKEWIDTH - Static variable in class ome.model.roi.Shape

submitted - Variable in class ome.model.jobs.Job

SUBMITTED - Static variable in class ome.model.jobs.Job

sudoer - Variable in class ome.model.meta.Session

SUDOER - Static variable in class ome.model.meta.Session

Sym(String) - Static method in class ome.model.units.Conversion

Static helper for creating Conversion.Sym instances.

Sym(char) - Constructor for class ome.model.units.Conversion.Sym

Sym(String) - Constructor for class ome.model.units.Conversion.Sym

symbol - Variable in enum ome.model.enums.UnitsElectricPotential

symbol - Variable in enum ome.model.enums.UnitsFrequency

symbol - Variable in enum ome.model.enums.UnitsLength

symbol - Variable in enum ome.model.enums.UnitsPower

symbol - Variable in enum ome.model.enums.UnitsPressure

symbol - Variable in enum ome.model.enums.UnitsTemperature

symbol - Variable in enum ome.model.enums.UnitsTime

synchronizeJobs(List<Long>) - Method in class ome.util.actions.PostgresSqlAction

synchronizeJobs(List<Long>) - Method in interface ome.util.SqlAction

T

TableIdGenerator - Class in ome.util

OMERO-specific id generation strategy.

TableIdGenerator() - Constructor for class ome.util.TableIdGenerator

TagAnnotation - Class in ome.model.annotations

TagAnnotation() - Constructor for class ome.model.annotations.TagAnnotation

TagAnnotation(Long) - Constructor for class ome.model.annotations.TagAnnotation

TagAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TagAnnotation

Main constructor.

temperature - Variable in class ome.model.acquisition.ImagingEnvironment

TEMPERATURE - Static variable in class ome.model.acquisition.ImagingEnvironment

Temperature - Class in ome.model.units

class storing both a Temperature and a unit for that Temperature (e.g.

Temperature() - Constructor for class ome.model.units.Temperature

Deprecated.

Temperature(double, String) - Constructor for class ome.model.units.Temperature

Temperature(double, UnitsTemperature) - Constructor for class ome.model.units.Temperature

Temperature(double, Unit<Temperature>) - Constructor for class ome.model.units.Temperature

Temperature(Temperature) - Constructor for class ome.model.units.Temperature

templatePrefix - Variable in class ome.model.fs.Fileset

TEMPLATEPREFIX - Static variable in class ome.model.fs.Fileset

TermAnnotation - Class in ome.model.annotations

TermAnnotation() - Constructor for class ome.model.annotations.TermAnnotation

TermAnnotation(Long) - Constructor for class ome.model.annotations.TermAnnotation

TermAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TermAnnotation

Main constructor.

termValue - Variable in class ome.model.annotations.TermAnnotation

TERMVALUE - Static variable in class ome.model.annotations.TermAnnotation

TextAnnotation - Class in ome.model.annotations

TextAnnotation() - Constructor for class ome.model.annotations.TextAnnotation

TextAnnotation(Long) - Constructor for class ome.model.annotations.TextAnnotation

TextAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TextAnnotation

Main constructor.

textValue - Variable in class ome.model.annotations.TextAnnotation

TEXTVALUE - Static variable in class ome.model.annotations.TextAnnotation

textValue - Variable in class ome.model.roi.Ellipse

TEXTVALUE - Static variable in class ome.model.roi.Ellipse

textValue - Variable in class ome.model.roi.Label

TEXTVALUE - Static variable in class ome.model.roi.Label

textValue - Variable in class ome.model.roi.Line

TEXTVALUE - Static variable in class ome.model.roi.Line

textValue - Variable in class ome.model.roi.Mask

TEXTVALUE - Static variable in class ome.model.roi.Mask

textValue - Variable in class ome.model.roi.Path

Deprecated.

TEXTVALUE - Static variable in class ome.model.roi.Path

Deprecated.

textValue - Variable in class ome.model.roi.Point

TEXTVALUE - Static variable in class ome.model.roi.Point

textValue - Variable in class ome.model.roi.Polygon

TEXTVALUE - Static variable in class ome.model.roi.Polygon

textValue - Variable in class ome.model.roi.Polyline

TEXTVALUE - Static variable in class ome.model.roi.Polyline

textValue - Variable in class ome.model.roi.Rectangle

TEXTVALUE - Static variable in class ome.model.roi.Rectangle

theC - Variable in class ome.model.core.PlaneInfo

THEC - Static variable in class ome.model.core.PlaneInfo

theC - Variable in class ome.model.roi.Shape

THEC - Static variable in class ome.model.roi.Shape

theT - Variable in class ome.model.core.PlaneInfo

THET - Static variable in class ome.model.core.PlaneInfo

theT - Variable in class ome.model.roi.Shape

THET - Static variable in class ome.model.roi.Shape

theZ - Variable in class ome.model.core.PlaneInfo

THEZ - Static variable in class ome.model.core.PlaneInfo

theZ - Variable in class ome.model.roi.Shape

THEZ - Static variable in class ome.model.roi.Shape

throwNullCollectionException(String) - Method in class ome.model.acquisition.Arc

throwNullCollectionException(String) - Method in class ome.model.acquisition.Detector

throwNullCollectionException(String) - Method in class ome.model.acquisition.DetectorSettings

throwNullCollectionException(String) - Method in class ome.model.acquisition.Dichroic

throwNullCollectionException(String) - Method in class ome.model.acquisition.Filament

throwNullCollectionException(String) - Method in class ome.model.acquisition.Filter

throwNullCollectionException(String) - Method in class ome.model.acquisition.FilterSet

throwNullCollectionException(String) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

throwNullCollectionException(String) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

throwNullCollectionException(String) - Method in class ome.model.acquisition.GenericExcitationSource

throwNullCollectionException(String) - Method in class ome.model.acquisition.ImagingEnvironment

throwNullCollectionException(String) - Method in class ome.model.acquisition.Instrument

throwNullCollectionException(String) - Method in class ome.model.acquisition.Laser

throwNullCollectionException(String) - Method in class ome.model.acquisition.LightEmittingDiode

throwNullCollectionException(String) - Method in class ome.model.acquisition.LightPath

throwNullCollectionException(String) - Method in class ome.model.acquisition.LightPathEmissionFilterLink

throwNullCollectionException(String) - Method in class ome.model.acquisition.LightPathExcitationFilterLink

throwNullCollectionException(String) - Method in class ome.model.acquisition.LightSettings

throwNullCollectionException(String) - Method in class ome.model.acquisition.LightSource

throwNullCollectionException(String) - Method in class ome.model.acquisition.Microscope

throwNullCollectionException(String) - Method in class ome.model.acquisition.Objective

throwNullCollectionException(String) - Method in class ome.model.acquisition.ObjectiveSettings

throwNullCollectionException(String) - Method in class ome.model.acquisition.OTF

throwNullCollectionException(String) - Method in class ome.model.acquisition.StageLabel

throwNullCollectionException(String) - Method in class ome.model.acquisition.TransmittanceRange

throwNullCollectionException(String) - Method in class ome.model.annotations.Annotation

throwNullCollectionException(String) - Method in class ome.model.annotations.AnnotationAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.BasicAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.BooleanAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.ChannelAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.CommentAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.DatasetAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.DetectorAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.DichroicAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.DoubleAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.ExperimenterAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.FileAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.FilesetAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.FilterAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.FolderAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.ImageAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.InstrumentAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.LightPathAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.LightSourceAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.ListAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.LongAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.MapAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.NamespaceAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.NodeAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.NumericAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.ObjectiveAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.OriginalFileAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.PlaneInfoAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.PlateAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.ProjectAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.ReagentAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.RoiAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.ScreenAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.SessionAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.ShapeAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.TagAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.TermAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.TextAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.TimestampAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.TypeAnnotation

throwNullCollectionException(String) - Method in class ome.model.annotations.WellAnnotationLink

throwNullCollectionException(String) - Method in class ome.model.annotations.XmlAnnotation

throwNullCollectionException(String) - Method in class ome.model.containers.Dataset

throwNullCollectionException(String) - Method in class ome.model.containers.DatasetImageLink

throwNullCollectionException(String) - Method in class ome.model.containers.Folder

throwNullCollectionException(String) - Method in class ome.model.containers.FolderImageLink

throwNullCollectionException(String) - Method in class ome.model.containers.FolderRoiLink

throwNullCollectionException(String) - Method in class ome.model.containers.Project

throwNullCollectionException(String) - Method in class ome.model.containers.ProjectDatasetLink

throwNullCollectionException(String) - Method in class ome.model.core.Channel

throwNullCollectionException(String) - Method in class ome.model.core.Image

throwNullCollectionException(String) - Method in class ome.model.core.LogicalChannel

throwNullCollectionException(String) - Method in class ome.model.core.OriginalFile

throwNullCollectionException(String) - Method in class ome.model.core.Pixels

throwNullCollectionException(String) - Method in class ome.model.core.PixelsOriginalFileMap

throwNullCollectionException(String) - Method in class ome.model.core.PlaneInfo

throwNullCollectionException(String) - Method in class ome.model.display.ChannelBinding

throwNullCollectionException(String) - Method in class ome.model.display.CodomainMapContext

throwNullCollectionException(String) - Method in class ome.model.display.ContrastStretchingContext

throwNullCollectionException(String) - Method in class ome.model.display.PlaneSlicingContext

throwNullCollectionException(String) - Method in class ome.model.display.ProjectionDef

throwNullCollectionException(String) - Method in class ome.model.display.QuantumDef

throwNullCollectionException(String) - Method in class ome.model.display.RenderingDef

throwNullCollectionException(String) - Method in class ome.model.display.ReverseIntensityContext

throwNullCollectionException(String) - Method in class ome.model.display.Thumbnail

throwNullCollectionException(String) - Method in class ome.model.enums.AcquisitionMode

throwNullCollectionException(String) - Method in class ome.model.enums.AdminPrivilege

throwNullCollectionException(String) - Method in class ome.model.enums.ArcType

throwNullCollectionException(String) - Method in class ome.model.enums.Binning

throwNullCollectionException(String) - Method in class ome.model.enums.ChecksumAlgorithm

throwNullCollectionException(String) - Method in class ome.model.enums.ContrastMethod

throwNullCollectionException(String) - Method in class ome.model.enums.Correction

throwNullCollectionException(String) - Method in class ome.model.enums.DetectorType

throwNullCollectionException(String) - Method in class ome.model.enums.DimensionOrder

throwNullCollectionException(String) - Method in class ome.model.enums.EventType

throwNullCollectionException(String) - Method in class ome.model.enums.ExperimentType

throwNullCollectionException(String) - Method in class ome.model.enums.Family

throwNullCollectionException(String) - Method in class ome.model.enums.FilamentType

throwNullCollectionException(String) - Method in class ome.model.enums.FilterType

throwNullCollectionException(String) - Method in class ome.model.enums.Format

throwNullCollectionException(String) - Method in class ome.model.enums.Illumination

throwNullCollectionException(String) - Method in class ome.model.enums.Immersion

throwNullCollectionException(String) - Method in class ome.model.enums.LaserMedium

throwNullCollectionException(String) - Method in class ome.model.enums.LaserType

throwNullCollectionException(String) - Method in class ome.model.enums.Medium

throwNullCollectionException(String) - Method in class ome.model.enums.MicrobeamManipulationType

throwNullCollectionException(String) - Method in class ome.model.enums.MicroscopeType

throwNullCollectionException(String) - Method in class ome.model.enums.PhotometricInterpretation

throwNullCollectionException(String) - Method in class ome.model.enums.PixelsType

throwNullCollectionException(String) - Method in class ome.model.enums.ProjectionAxis

throwNullCollectionException(String) - Method in class ome.model.enums.ProjectionType

throwNullCollectionException(String) - Method in class ome.model.enums.Pulse

throwNullCollectionException(String) - Method in class ome.model.enums.RenderingModel

throwNullCollectionException(String) - Method in class ome.model.experiment.Experiment

throwNullCollectionException(String) - Method in class ome.model.experiment.MicrobeamManipulation

throwNullCollectionException(String) - Method in class ome.model.fs.Fileset

throwNullCollectionException(String) - Method in class ome.model.fs.FilesetEntry

throwNullCollectionException(String) - Method in class ome.model.fs.FilesetJobLink

throwNullCollectionException(String) - Method in class ome.model.internal.Link

throwNullCollectionException(String) - Method in class ome.model.jobs.ImportJob

Deprecated.

throwNullCollectionException(String) - Method in class ome.model.jobs.IndexingJob

throwNullCollectionException(String) - Method in class ome.model.jobs.IntegrityCheckJob

throwNullCollectionException(String) - Method in class ome.model.jobs.Job

throwNullCollectionException(String) - Method in class ome.model.jobs.JobOriginalFileLink

throwNullCollectionException(String) - Method in class ome.model.jobs.JobStatus

throwNullCollectionException(String) - Method in class ome.model.jobs.MetadataImportJob

throwNullCollectionException(String) - Method in class ome.model.jobs.ParseJob

throwNullCollectionException(String) - Method in class ome.model.jobs.PixelDataJob

throwNullCollectionException(String) - Method in class ome.model.jobs.ScriptJob

throwNullCollectionException(String) - Method in class ome.model.jobs.ThumbnailGenerationJob

throwNullCollectionException(String) - Method in class ome.model.jobs.UploadJob

throwNullCollectionException(String) - Method in class ome.model.meta.DBPatch

throwNullCollectionException(String) - Method in class ome.model.meta.Event

throwNullCollectionException(String) - Method in class ome.model.meta.EventLog

throwNullCollectionException(String) - Method in class ome.model.meta.Experimenter

throwNullCollectionException(String) - Method in class ome.model.meta.ExperimenterGroup

throwNullCollectionException(String) - Method in class ome.model.meta.ExternalInfo

throwNullCollectionException(String) - Method in class ome.model.meta.GroupExperimenterMap

throwNullCollectionException(String) - Method in class ome.model.meta.Namespace

throwNullCollectionException(String) - Method in class ome.model.meta.Node

throwNullCollectionException(String) - Method in class ome.model.meta.Session

throwNullCollectionException(String) - Method in class ome.model.meta.Share

throwNullCollectionException(String) - Method in class ome.model.meta.ShareMember

throwNullCollectionException(String) - Method in class ome.model.roi.AffineTransform

throwNullCollectionException(String) - Method in class ome.model.roi.Ellipse

throwNullCollectionException(String) - Method in class ome.model.roi.Label

throwNullCollectionException(String) - Method in class ome.model.roi.Line

throwNullCollectionException(String) - Method in class ome.model.roi.Mask

throwNullCollectionException(String) - Method in class ome.model.roi.Path

Deprecated.

throwNullCollectionException(String) - Method in class ome.model.roi.Point

throwNullCollectionException(String) - Method in class ome.model.roi.Polygon

throwNullCollectionException(String) - Method in class ome.model.roi.Polyline

throwNullCollectionException(String) - Method in class ome.model.roi.Rectangle

throwNullCollectionException(String) - Method in class ome.model.roi.Roi

throwNullCollectionException(String) - Method in class ome.model.roi.Shape

throwNullCollectionException(String) - Method in class ome.model.screen.Plate

throwNullCollectionException(String) - Method in class ome.model.screen.PlateAcquisition

throwNullCollectionException(String) - Method in class ome.model.screen.Reagent

throwNullCollectionException(String) - Method in class ome.model.screen.Screen

throwNullCollectionException(String) - Method in class ome.model.screen.ScreenPlateLink

throwNullCollectionException(String) - Method in class ome.model.screen.Well

throwNullCollectionException(String) - Method in class ome.model.screen.WellReagentLink

throwNullCollectionException(String) - Method in class ome.model.screen.WellSample

throwNullCollectionException(String) - Method in class ome.model.stats.StatsInfo

Thumbnail - Class in ome.model.display

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Thumbnail() - Constructor for class ome.model.display.Thumbnail

Thumbnail(Long) - Constructor for class ome.model.display.Thumbnail

Thumbnail(Long, boolean) - Constructor for class ome.model.display.Thumbnail

Main constructor.

Thumbnail(Pixels, String, Integer, Integer) - Constructor for class ome.model.display.Thumbnail

Thumbnail.Details - Class in ome.model.display

ThumbnailGenerationJob - Class in ome.model.jobs

ThumbnailGenerationJob() - Constructor for class ome.model.jobs.ThumbnailGenerationJob

ThumbnailGenerationJob(Long) - Constructor for class ome.model.jobs.ThumbnailGenerationJob

ThumbnailGenerationJob(Long, boolean) - Constructor for class ome.model.jobs.ThumbnailGenerationJob

Main constructor.

thumbnails - Variable in class ome.model.core.Pixels

THUMBNAILS - Static variable in class ome.model.core.Pixels

time - Variable in class ome.model.meta.Event

TIME - Static variable in class ome.model.meta.Event

Time - Class in ome.model.units

class storing both a Time and a unit for that Time (e.g.

Time() - Constructor for class ome.model.units.Time

Deprecated.

Time(double, String) - Constructor for class ome.model.units.Time

Time(double, UnitsTime) - Constructor for class ome.model.units.Time

Time(double, Unit<Time>) - Constructor for class ome.model.units.Time

Time(Time) - Constructor for class ome.model.units.Time

timeIncrement - Variable in class ome.model.core.Pixels

TIMEINCREMENT - Static variable in class ome.model.core.Pixels

timepoint - Variable in class ome.model.screen.WellSample

TIMEPOINT - Static variable in class ome.model.screen.WellSample

TimestampAnnotation - Class in ome.model.annotations

TimestampAnnotation() - Constructor for class ome.model.annotations.TimestampAnnotation

TimestampAnnotation(Long) - Constructor for class ome.model.annotations.TimestampAnnotation

TimestampAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TimestampAnnotation

Main constructor.

timeToIdle - Variable in class ome.model.meta.Session

TIMETOIDLE - Static variable in class ome.model.meta.Session

timeToLive - Variable in class ome.model.meta.Session

TIMETOLIVE - Static variable in class ome.model.meta.Session

timeValue - Variable in class ome.model.annotations.TimestampAnnotation

TIMEVALUE - Static variable in class ome.model.annotations.TimestampAnnotation

todbvalue(Object) - Method in enum ome.model.units.UNITS

Map from the CODE-based enums which are used in Java, Ice, etc.

Token - Class in ome.model.internal

authorization token to allow/revoke certain privileges.

Token() - Constructor for class ome.model.internal.Token

tokenMatches(Token) - Method in class ome.model.internal.GraphHolder

check the Token for the IObject represented by this GraphHolder.

tokenStream(String, Reader) - Method in class ome.services.fulltext.ConfiguredAnalyzer

toPermissions(Object) - Static method in class ome.util.Utils

Returns a Permissions instance from its internal representation.

toString() - Method in class ome.model.acquisition.Arc

toString() - Method in class ome.model.acquisition.Detector

toString() - Method in class ome.model.acquisition.DetectorSettings

toString() - Method in class ome.model.acquisition.Dichroic

toString() - Method in class ome.model.acquisition.Filament

toString() - Method in class ome.model.acquisition.Filter

toString() - Method in class ome.model.acquisition.FilterSet

toString() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

toString() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

toString() - Method in class ome.model.acquisition.GenericExcitationSource

toString() - Method in class ome.model.acquisition.ImagingEnvironment

toString() - Method in class ome.model.acquisition.Instrument

toString() - Method in class ome.model.acquisition.Laser

toString() - Method in class ome.model.acquisition.LightEmittingDiode

toString() - Method in class ome.model.acquisition.LightPath

toString() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

toString() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

toString() - Method in class ome.model.acquisition.LightSettings

toString() - Method in class ome.model.acquisition.LightSource

toString() - Method in class ome.model.acquisition.Microscope

toString() - Method in class ome.model.acquisition.Objective

toString() - Method in class ome.model.acquisition.ObjectiveSettings

toString() - Method in class ome.model.acquisition.OTF

toString() - Method in class ome.model.acquisition.StageLabel

toString() - Method in class ome.model.acquisition.TransmittanceRange

toString() - Method in class ome.model.annotations.Annotation

toString() - Method in class ome.model.annotations.AnnotationAnnotationLink

toString() - Method in class ome.model.annotations.BasicAnnotation

toString() - Method in class ome.model.annotations.BooleanAnnotation

toString() - Method in class ome.model.annotations.ChannelAnnotationLink

toString() - Method in class ome.model.annotations.CommentAnnotation

toString() - Method in class ome.model.annotations.DatasetAnnotationLink

toString() - Method in class ome.model.annotations.DetectorAnnotationLink

toString() - Method in class ome.model.annotations.DichroicAnnotationLink

toString() - Method in class ome.model.annotations.DoubleAnnotation

toString() - Method in class ome.model.annotations.ExperimenterAnnotationLink

toString() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

toString() - Method in class ome.model.annotations.FileAnnotation

toString() - Method in class ome.model.annotations.FilesetAnnotationLink

toString() - Method in class ome.model.annotations.FilterAnnotationLink

toString() - Method in class ome.model.annotations.FolderAnnotationLink

toString() - Method in class ome.model.annotations.ImageAnnotationLink

toString() - Method in class ome.model.annotations.InstrumentAnnotationLink

toString() - Method in class ome.model.annotations.LightPathAnnotationLink

toString() - Method in class ome.model.annotations.LightSourceAnnotationLink

toString() - Method in class ome.model.annotations.ListAnnotation

toString() - Method in class ome.model.annotations.LongAnnotation

toString() - Method in class ome.model.annotations.MapAnnotation

toString() - Method in class ome.model.annotations.NamespaceAnnotationLink

toString() - Method in class ome.model.annotations.NodeAnnotationLink

toString() - Method in class ome.model.annotations.NumericAnnotation

toString() - Method in class ome.model.annotations.ObjectiveAnnotationLink

toString() - Method in class ome.model.annotations.OriginalFileAnnotationLink

toString() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

toString() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

toString() - Method in class ome.model.annotations.PlateAnnotationLink

toString() - Method in class ome.model.annotations.ProjectAnnotationLink

toString() - Method in class ome.model.annotations.ReagentAnnotationLink

toString() - Method in class ome.model.annotations.RoiAnnotationLink

toString() - Method in class ome.model.annotations.ScreenAnnotationLink

toString() - Method in class ome.model.annotations.SessionAnnotationLink

toString() - Method in class ome.model.annotations.ShapeAnnotationLink

toString() - Method in class ome.model.annotations.TagAnnotation

toString() - Method in class ome.model.annotations.TermAnnotation

toString() - Method in class ome.model.annotations.TextAnnotation

toString() - Method in class ome.model.annotations.TimestampAnnotation

toString() - Method in class ome.model.annotations.TypeAnnotation

toString() - Method in class ome.model.annotations.WellAnnotationLink

toString() - Method in class ome.model.annotations.XmlAnnotation

toString() - Method in class ome.model.containers.Dataset

toString() - Method in class ome.model.containers.DatasetImageLink

toString() - Method in class ome.model.containers.Folder

toString() - Method in class ome.model.containers.FolderImageLink

toString() - Method in class ome.model.containers.FolderRoiLink

toString() - Method in class ome.model.containers.Project

toString() - Method in class ome.model.containers.ProjectDatasetLink

toString() - Method in class ome.model.core.Channel

toString() - Method in class ome.model.core.Image

toString() - Method in class ome.model.core.LogicalChannel

toString() - Method in class ome.model.core.OriginalFile

toString() - Method in class ome.model.core.Pixels

toString() - Method in class ome.model.core.PixelsOriginalFileMap

toString() - Method in class ome.model.core.PlaneInfo

toString() - Method in class ome.model.display.ChannelBinding

toString() - Method in class ome.model.display.CodomainMapContext

toString() - Method in class ome.model.display.ContrastStretchingContext

toString() - Method in class ome.model.display.PlaneSlicingContext

toString() - Method in class ome.model.display.ProjectionDef

toString() - Method in class ome.model.display.QuantumDef

toString() - Method in class ome.model.display.RenderingDef

toString() - Method in class ome.model.display.ReverseIntensityContext

toString() - Method in class ome.model.display.Thumbnail

toString() - Method in class ome.model.enums.AcquisitionMode

toString() - Method in class ome.model.enums.AdminPrivilege

toString() - Method in class ome.model.enums.ArcType

toString() - Method in class ome.model.enums.Binning

toString() - Method in class ome.model.enums.ChecksumAlgorithm

toString() - Method in class ome.model.enums.ContrastMethod

toString() - Method in class ome.model.enums.Correction

toString() - Method in class ome.model.enums.DetectorType

toString() - Method in class ome.model.enums.DimensionOrder

toString() - Method in class ome.model.enums.EventType

toString() - Method in class ome.model.enums.ExperimentType

toString() - Method in class ome.model.enums.Family

toString() - Method in class ome.model.enums.FilamentType

toString() - Method in class ome.model.enums.FilterType

toString() - Method in class ome.model.enums.Format

toString() - Method in class ome.model.enums.Illumination

toString() - Method in class ome.model.enums.Immersion

toString() - Method in class ome.model.enums.LaserMedium

toString() - Method in class ome.model.enums.LaserType

toString() - Method in class ome.model.enums.Medium

toString() - Method in class ome.model.enums.MicrobeamManipulationType

toString() - Method in class ome.model.enums.MicroscopeType

toString() - Method in class ome.model.enums.PhotometricInterpretation

toString() - Method in class ome.model.enums.PixelsType

toString() - Method in class ome.model.enums.ProjectionAxis

toString() - Method in class ome.model.enums.ProjectionType

toString() - Method in class ome.model.enums.Pulse

toString() - Method in class ome.model.enums.RenderingModel

toString() - Method in class ome.model.experiment.Experiment

toString() - Method in class ome.model.experiment.MicrobeamManipulation

toString() - Method in class ome.model.fs.Fileset

toString() - Method in class ome.model.fs.FilesetEntry

toString() - Method in class ome.model.fs.FilesetJobLink

toString() - Method in class ome.model.internal.Details

simple view of the Details.

toString(StringBuilder) - Method in class ome.model.internal.Details

toString() - Method in class ome.model.internal.Link

toString() - Method in class ome.model.internal.NamedValue

toString() - Method in class ome.model.internal.Permissions

produces a String representation of the Permissions similar to those on a Unix filesystem.

toString() - Method in class ome.model.jobs.ImportJob

Deprecated.

toString() - Method in class ome.model.jobs.IndexingJob

toString() - Method in class ome.model.jobs.IntegrityCheckJob

toString() - Method in class ome.model.jobs.Job

toString() - Method in class ome.model.jobs.JobOriginalFileLink

toString() - Method in class ome.model.jobs.JobStatus

toString() - Method in class ome.model.jobs.MetadataImportJob

toString() - Method in class ome.model.jobs.ParseJob

toString() - Method in class ome.model.jobs.PixelDataJob

toString() - Method in class ome.model.jobs.ScriptJob

toString() - Method in class ome.model.jobs.ThumbnailGenerationJob

toString() - Method in class ome.model.jobs.UploadJob

toString() - Method in class ome.model.meta.DBPatch

toString() - Method in class ome.model.meta.Event

toString() - Method in class ome.model.meta.EventLog

toString() - Method in class ome.model.meta.Experimenter

toString() - Method in class ome.model.meta.ExperimenterGroup

toString() - Method in class ome.model.meta.ExternalInfo

toString() - Method in class ome.model.meta.GroupExperimenterMap

toString() - Method in class ome.model.meta.Namespace

toString() - Method in class ome.model.meta.Node

toString() - Method in class ome.model.meta.Session

toString() - Method in class ome.model.meta.Share

toString() - Method in class ome.model.meta.ShareMember

toString() - Method in class ome.model.roi.AffineTransform

toString() - Method in class ome.model.roi.Ellipse

toString() - Method in class ome.model.roi.Label

toString() - Method in class ome.model.roi.Line

toString() - Method in class ome.model.roi.Mask

toString() - Method in class ome.model.roi.Path

Deprecated.

toString() - Method in class ome.model.roi.Point

toString() - Method in class ome.model.roi.Polygon

toString() - Method in class ome.model.roi.Polyline

toString() - Method in class ome.model.roi.Rectangle

toString() - Method in class ome.model.roi.Roi

toString() - Method in class ome.model.roi.Shape

toString() - Method in class ome.model.screen.Plate

toString() - Method in class ome.model.screen.PlateAcquisition

toString() - Method in class ome.model.screen.Reagent

toString() - Method in class ome.model.screen.Screen

toString() - Method in class ome.model.screen.ScreenPlateLink

toString() - Method in class ome.model.screen.Well

toString() - Method in class ome.model.screen.WellReagentLink

toString() - Method in class ome.model.screen.WellSample

toString() - Method in class ome.model.stats.StatsInfo

toString() - Method in class ome.model.units.ElectricPotential

toString() - Method in class ome.model.units.Frequency

toString() - Method in class ome.model.units.Length

toString() - Method in class ome.model.units.Power

toString() - Method in class ome.model.units.Pressure

toString() - Method in class ome.model.units.Temperature

toString() - Method in class ome.model.units.Time

toString() - Method in class ome.parameters.Filter

toString() - Method in class ome.parameters.Options

toString() - Method in class ome.parameters.Parameters

toString() - Method in class ome.parameters.QueryParameter

toString() - Method in class ome.util.LSID

toString(String) - Method in class ome.util.PrivilegedStringType

toString() - Method in class ome.util.SqlAction.DeleteLog

transform - Variable in class ome.model.roi.Shape

TRANSFORM - Static variable in class ome.model.roi.Shape

transmittance - Variable in class ome.model.acquisition.TransmittanceRange

TRANSMITTANCE - Static variable in class ome.model.acquisition.TransmittanceRange

transmittanceRange - Variable in class ome.model.acquisition.Filter

TRANSMITTANCERANGE - Static variable in class ome.model.acquisition.Filter

TransmittanceRange - Class in ome.model.acquisition

These filter definitions are used by the security system to eliminate non-readable objects from queries.

TransmittanceRange() - Constructor for class ome.model.acquisition.TransmittanceRange

TransmittanceRange(Long) - Constructor for class ome.model.acquisition.TransmittanceRange

TransmittanceRange(Long, boolean) - Constructor for class ome.model.acquisition.TransmittanceRange

Main constructor.

TransmittanceRange.Details - Class in ome.model.acquisition

trueClass(Class<T>) - Static method in class ome.util.Utils

finds the "true" class identified by a given Class object.

trueInstance(Class<T>) - Static method in class ome.util.Utils

instantiates an object using the trueClass.

TryAgain - Exception in ome.conditions

Background processing necessary to process the request.

TryAgain(String, long) - Constructor for exception ome.conditions.TryAgain

tryLock() - Static method in class ome.util.DetailsFieldBridge

tuneable - Variable in class ome.model.acquisition.Laser

TUNEABLE - Static variable in class ome.model.acquisition.Laser

type - Variable in class ome.model.acquisition.Arc

TYPE - Static variable in class ome.model.acquisition.Arc

type - Variable in class ome.model.acquisition.Detector

TYPE - Static variable in class ome.model.acquisition.Detector

type - Variable in class ome.model.acquisition.Filament

TYPE - Static variable in class ome.model.acquisition.Filament

type - Variable in class ome.model.acquisition.Filter

TYPE - Static variable in class ome.model.acquisition.Filter

type - Variable in class ome.model.acquisition.Laser

TYPE - Static variable in class ome.model.acquisition.Laser

type - Variable in class ome.model.acquisition.Microscope

TYPE - Static variable in class ome.model.acquisition.Microscope

type - Variable in class ome.model.display.ProjectionDef

TYPE - Static variable in class ome.model.display.ProjectionDef

type - Variable in class ome.model.experiment.Experiment

TYPE - Static variable in class ome.model.experiment.Experiment

type - Variable in class ome.model.experiment.MicrobeamManipulation

TYPE - Static variable in class ome.model.experiment.MicrobeamManipulation

type - Variable in class ome.model.jobs.Job

TYPE - Static variable in class ome.model.jobs.Job

type - Variable in class ome.model.meta.Event

TYPE - Static variable in class ome.model.meta.Event

type - Variable in class ome.model.screen.Screen

TYPE - Static variable in class ome.model.screen.Screen

type - Variable in class ome.model.screen.Well

TYPE - Static variable in class ome.model.screen.Well

type - Variable in class ome.parameters.QueryParameter

TypeAnnotation - Class in ome.model.annotations

TypeAnnotation() - Constructor for class ome.model.annotations.TypeAnnotation

TypeAnnotation(Long) - Constructor for class ome.model.annotations.TypeAnnotation

TypeAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TypeAnnotation

Main constructor.

U

unique() - Method in class ome.parameters.Filter

state that this Filter should only return a single value if possible.

unique() - Method in class ome.parameters.Parameters

UNIT - Static variable in class ome.model.units.ElectricPotential

UNIT - Static variable in class ome.model.units.Frequency

UNIT - Static variable in class ome.model.units.Length

UNIT - Static variable in class ome.model.units.Power

UNIT - Static variable in class ome.model.units.Pressure

UNIT - Static variable in class ome.model.units.Temperature

UNIT - Static variable in class ome.model.units.Time

Unit - Interface in ome.model.units

marker interface for all of ome.model.unit types.

UnitEnum - Interface in ome.model.units

marker interface for all of ome.model.unit enums.

UNITS - Enum in ome.model.units

UnitsElectricPotential - Enum in ome.model.enums

UnitsFrequency - Enum in ome.model.enums

UnitsLength - Enum in ome.model.enums

UnitsPower - Enum in ome.model.enums

UnitsPressure - Enum in ome.model.enums

UnitsTemperature - Enum in ome.model.enums

UnitsTime - Enum in ome.model.enums

unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Detector

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Dichroic

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Filter

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Instrument

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.LightPath

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.LightSource

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Objective

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.annotations.Annotation

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.containers.Dataset

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.containers.Folder

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.containers.Project

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.core.Channel

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.core.Image

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.core.OriginalFile

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.core.PlaneInfo

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.fs.Fileset

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in interface ome.model.IAnnotated

unlinkAnnotation(Annotation) - Method in class ome.model.meta.Experimenter

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.meta.ExperimenterGroup

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.meta.Namespace

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.meta.Node

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.meta.Session

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.roi.Roi

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.roi.Shape

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.screen.Plate

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.screen.PlateAcquisition

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.screen.Reagent

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.screen.Screen

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkAnnotation(Annotation) - Method in class ome.model.screen.Well

unlinks all ome.model.annotations.Annotation instances from this instance.

unlinkDataset(Dataset) - Method in class ome.model.containers.Project

unlinks all ome.model.containers.Dataset instances from this instance.

unlinkDataset(Dataset) - Method in class ome.model.core.Image

unlinks all ome.model.containers.Dataset instances from this instance.

unlinkEmissionFilter(FilterSet) - Method in class ome.model.acquisition.Filter

unlinks all ome.model.acquisition.FilterSet instances from this instance.

unlinkEmissionFilter(Filter) - Method in class ome.model.acquisition.FilterSet

unlinks all ome.model.acquisition.Filter instances from this instance.

unlinkEmissionFilter(Filter) - Method in class ome.model.acquisition.LightPath

unlinks all ome.model.acquisition.Filter instances from this instance.

unlinkExcitationFilter(FilterSet) - Method in class ome.model.acquisition.Filter

unlinks all ome.model.acquisition.FilterSet instances from this instance.

unlinkExcitationFilter(Filter) - Method in class ome.model.acquisition.FilterSet

unlinks all ome.model.acquisition.Filter instances from this instance.

unlinkExcitationFilter(Filter) - Method in class ome.model.acquisition.LightPath

unlinks all ome.model.acquisition.Filter instances from this instance.

unlinkExperimenter(Experimenter) - Method in class ome.model.meta.ExperimenterGroup

unlinks all ome.model.meta.Experimenter instances from this instance.

unlinkExperimenterGroup(ExperimenterGroup) - Method in class ome.model.meta.Experimenter

unlinks all ome.model.meta.ExperimenterGroup instances from this instance.

unlinkFolder(Folder) - Method in class ome.model.core.Image

unlinks all ome.model.containers.Folder instances from this instance.

unlinkFolder(Folder) - Method in class ome.model.roi.Roi

unlinks all ome.model.containers.Folder instances from this instance.

unlinkImage(Image) - Method in class ome.model.containers.Dataset

unlinks all ome.model.core.Image instances from this instance.

unlinkImage(Image) - Method in class ome.model.containers.Folder

unlinks all ome.model.core.Image instances from this instance.

unlinkJob(Job) - Method in class ome.model.fs.Fileset

unlinks all ome.model.jobs.Job instances from this instance.

unlinkOriginalFile(OriginalFile) - Method in class ome.model.core.Pixels

unlinks all ome.model.core.OriginalFile instances from this instance.

unlinkOriginalFile(OriginalFile) - Method in class ome.model.jobs.Job

unlinks all ome.model.core.OriginalFile instances from this instance.

unlinkPixels(Pixels) - Method in class ome.model.core.OriginalFile

unlinks all ome.model.core.Pixels instances from this instance.

unlinkPlate(Plate) - Method in class ome.model.screen.Screen

unlinks all ome.model.screen.Plate instances from this instance.

unlinkProject(Project) - Method in class ome.model.containers.Dataset

unlinks all ome.model.containers.Project instances from this instance.

unlinkReagent(Reagent) - Method in class ome.model.screen.Well

unlinks all ome.model.screen.Reagent instances from this instance.

unlinkRoi(Roi) - Method in class ome.model.containers.Folder

unlinks all ome.model.roi.Roi instances from this instance.

unlinkScreen(Screen) - Method in class ome.model.screen.Plate

unlinks all ome.model.screen.Screen instances from this instance.

unlinkWell(Well) - Method in class ome.model.screen.Reagent

unlinks all ome.model.screen.Well instances from this instance.

unload() - Method in class ome.model.acquisition.Arc

unload() - Method in class ome.model.acquisition.Detector

unload() - Method in class ome.model.acquisition.DetectorSettings

unload() - Method in class ome.model.acquisition.Dichroic

unload() - Method in class ome.model.acquisition.Filament

unload() - Method in class ome.model.acquisition.Filter

unload() - Method in class ome.model.acquisition.FilterSet

unload() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

unload() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

unload() - Method in class ome.model.acquisition.GenericExcitationSource

unload() - Method in class ome.model.acquisition.ImagingEnvironment

unload() - Method in class ome.model.acquisition.Instrument

unload() - Method in class ome.model.acquisition.Laser

unload() - Method in class ome.model.acquisition.LightEmittingDiode

unload() - Method in class ome.model.acquisition.LightPath

unload() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

unload() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

unload() - Method in class ome.model.acquisition.LightSettings

unload() - Method in class ome.model.acquisition.LightSource

unload() - Method in class ome.model.acquisition.Microscope

unload() - Method in class ome.model.acquisition.Objective

unload() - Method in class ome.model.acquisition.ObjectiveSettings

unload() - Method in class ome.model.acquisition.OTF

unload() - Method in class ome.model.acquisition.StageLabel

unload() - Method in class ome.model.acquisition.TransmittanceRange

unload() - Method in class ome.model.annotations.Annotation

unload() - Method in class ome.model.annotations.AnnotationAnnotationLink

unload() - Method in class ome.model.annotations.BasicAnnotation

unload() - Method in class ome.model.annotations.BooleanAnnotation

unload() - Method in class ome.model.annotations.ChannelAnnotationLink

unload() - Method in class ome.model.annotations.CommentAnnotation

unload() - Method in class ome.model.annotations.DatasetAnnotationLink

unload() - Method in class ome.model.annotations.DetectorAnnotationLink

unload() - Method in class ome.model.annotations.DichroicAnnotationLink

unload() - Method in class ome.model.annotations.DoubleAnnotation

unload() - Method in class ome.model.annotations.ExperimenterAnnotationLink

unload() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

unload() - Method in class ome.model.annotations.FileAnnotation

unload() - Method in class ome.model.annotations.FilesetAnnotationLink

unload() - Method in class ome.model.annotations.FilterAnnotationLink

unload() - Method in class ome.model.annotations.FolderAnnotationLink

unload() - Method in class ome.model.annotations.ImageAnnotationLink

unload() - Method in class ome.model.annotations.InstrumentAnnotationLink

unload() - Method in class ome.model.annotations.LightPathAnnotationLink

unload() - Method in class ome.model.annotations.LightSourceAnnotationLink

unload() - Method in class ome.model.annotations.ListAnnotation

unload() - Method in class ome.model.annotations.LongAnnotation

unload() - Method in class ome.model.annotations.MapAnnotation

unload() - Method in class ome.model.annotations.NamespaceAnnotationLink

unload() - Method in class ome.model.annotations.NodeAnnotationLink

unload() - Method in class ome.model.annotations.NumericAnnotation

unload() - Method in class ome.model.annotations.ObjectiveAnnotationLink

unload() - Method in class ome.model.annotations.OriginalFileAnnotationLink

unload() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

unload() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

unload() - Method in class ome.model.annotations.PlateAnnotationLink

unload() - Method in class ome.model.annotations.ProjectAnnotationLink

unload() - Method in class ome.model.annotations.ReagentAnnotationLink

unload() - Method in class ome.model.annotations.RoiAnnotationLink

unload() - Method in class ome.model.annotations.ScreenAnnotationLink

unload() - Method in class ome.model.annotations.SessionAnnotationLink

unload() - Method in class ome.model.annotations.ShapeAnnotationLink

unload() - Method in class ome.model.annotations.TagAnnotation

unload() - Method in class ome.model.annotations.TermAnnotation

unload() - Method in class ome.model.annotations.TextAnnotation

unload() - Method in class ome.model.annotations.TimestampAnnotation

unload() - Method in class ome.model.annotations.TypeAnnotation

unload() - Method in class ome.model.annotations.WellAnnotationLink

unload() - Method in class ome.model.annotations.XmlAnnotation

unload() - Method in class ome.model.containers.Dataset

unload() - Method in class ome.model.containers.DatasetImageLink

unload() - Method in class ome.model.containers.Folder

unload() - Method in class ome.model.containers.FolderImageLink

unload() - Method in class ome.model.containers.FolderRoiLink

unload() - Method in class ome.model.containers.Project

unload() - Method in class ome.model.containers.ProjectDatasetLink

unload() - Method in class ome.model.core.Channel

unload() - Method in class ome.model.core.Image

unload() - Method in class ome.model.core.LogicalChannel

unload() - Method in class ome.model.core.OriginalFile

unload() - Method in class ome.model.core.Pixels

unload() - Method in class ome.model.core.PixelsOriginalFileMap

unload() - Method in class ome.model.core.PlaneInfo

unload() - Method in class ome.model.display.ChannelBinding

unload() - Method in class ome.model.display.CodomainMapContext

unload() - Method in class ome.model.display.ContrastStretchingContext

unload() - Method in class ome.model.display.PlaneSlicingContext

unload() - Method in class ome.model.display.ProjectionDef

unload() - Method in class ome.model.display.QuantumDef

unload() - Method in class ome.model.display.RenderingDef

unload() - Method in class ome.model.display.ReverseIntensityContext

unload() - Method in class ome.model.display.Thumbnail

unload() - Method in class ome.model.enums.AcquisitionMode

unload() - Method in class ome.model.enums.AdminPrivilege

unload() - Method in class ome.model.enums.ArcType

unload() - Method in class ome.model.enums.Binning

unload() - Method in class ome.model.enums.ChecksumAlgorithm

unload() - Method in class ome.model.enums.ContrastMethod

unload() - Method in class ome.model.enums.Correction

unload() - Method in class ome.model.enums.DetectorType

unload() - Method in class ome.model.enums.DimensionOrder

unload() - Method in class ome.model.enums.EventType

unload() - Method in class ome.model.enums.ExperimentType

unload() - Method in class ome.model.enums.Family

unload() - Method in class ome.model.enums.FilamentType

unload() - Method in class ome.model.enums.FilterType

unload() - Method in class ome.model.enums.Format

unload() - Method in class ome.model.enums.Illumination

unload() - Method in class ome.model.enums.Immersion

unload() - Method in class ome.model.enums.LaserMedium

unload() - Method in class ome.model.enums.LaserType

unload() - Method in class ome.model.enums.Medium

unload() - Method in class ome.model.enums.MicrobeamManipulationType

unload() - Method in class ome.model.enums.MicroscopeType

unload() - Method in class ome.model.enums.PhotometricInterpretation

unload() - Method in class ome.model.enums.PixelsType

unload() - Method in class ome.model.enums.ProjectionAxis

unload() - Method in class ome.model.enums.ProjectionType

unload() - Method in class ome.model.enums.Pulse

unload() - Method in class ome.model.enums.RenderingModel

unload() - Method in class ome.model.experiment.Experiment

unload() - Method in class ome.model.experiment.MicrobeamManipulation

unload() - Method in class ome.model.fs.Fileset

unload() - Method in class ome.model.fs.FilesetEntry

unload() - Method in class ome.model.fs.FilesetJobLink

unload() - Method in class ome.model.internal.Link

unload() - Method in interface ome.model.IObject

set the loaded field to false, and set all non-ID fields to null.

unload() - Method in class ome.model.jobs.ImportJob

Deprecated.

unload() - Method in class ome.model.jobs.IndexingJob

unload() - Method in class ome.model.jobs.IntegrityCheckJob

unload() - Method in class ome.model.jobs.Job

unload() - Method in class ome.model.jobs.JobOriginalFileLink

unload() - Method in class ome.model.jobs.JobStatus

unload() - Method in class ome.model.jobs.MetadataImportJob

unload() - Method in class ome.model.jobs.ParseJob

unload() - Method in class ome.model.jobs.PixelDataJob

unload() - Method in class ome.model.jobs.ScriptJob

unload() - Method in class ome.model.jobs.ThumbnailGenerationJob

unload() - Method in class ome.model.jobs.UploadJob

unload() - Method in class ome.model.meta.DBPatch

unload() - Method in class ome.model.meta.Event

unload() - Method in class ome.model.meta.EventLog

unload() - Method in class ome.model.meta.Experimenter

unload() - Method in class ome.model.meta.ExperimenterGroup

unload() - Method in class ome.model.meta.ExternalInfo

unload() - Method in class ome.model.meta.GroupExperimenterMap

unload() - Method in class ome.model.meta.Namespace

unload() - Method in class ome.model.meta.Node

unload() - Method in class ome.model.meta.Session

unload() - Method in class ome.model.meta.Share

unload() - Method in class ome.model.meta.ShareMember

unload() - Method in class ome.model.roi.AffineTransform

unload() - Method in class ome.model.roi.Ellipse

unload() - Method in class ome.model.roi.Label

unload() - Method in class ome.model.roi.Line

unload() - Method in class ome.model.roi.Mask

unload() - Method in class ome.model.roi.Path

Deprecated.

unload() - Method in class ome.model.roi.Point

unload() - Method in class ome.model.roi.Polygon

unload() - Method in class ome.model.roi.Polyline

unload() - Method in class ome.model.roi.Rectangle

unload() - Method in class ome.model.roi.Roi

unload() - Method in class ome.model.roi.Shape

unload() - Method in class ome.model.screen.Plate

unload() - Method in class ome.model.screen.PlateAcquisition

unload() - Method in class ome.model.screen.Reagent

unload() - Method in class ome.model.screen.Screen

unload() - Method in class ome.model.screen.ScreenPlateLink

unload() - Method in class ome.model.screen.Well

unload() - Method in class ome.model.screen.WellReagentLink

unload() - Method in class ome.model.screen.WellSample

unload() - Method in class ome.model.stats.StatsInfo

unload() - Method in class ome.util.PermDetails

unlock() - Static method in class ome.util.DetailsFieldBridge

unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Detector

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Dichroic

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Filter

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Instrument

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.LightPath

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.LightSource

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Objective

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.annotations.Annotation

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.containers.Dataset

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.containers.Folder

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.containers.Project

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.core.Channel

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.core.Image

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.core.OriginalFile

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.core.PlaneInfo

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.fs.Fileset

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in interface ome.model.IAnnotated

unmodifiableAnnotationLinks() - Method in class ome.model.meta.Experimenter

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.meta.Namespace

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.meta.Node

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.meta.Session

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.roi.Roi

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.roi.Shape

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.screen.Plate

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.screen.Reagent

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.screen.Screen

Returns an unmodifiable collection-view

unmodifiableAnnotationLinks() - Method in class ome.model.screen.Well

Returns an unmodifiable collection-view

unmodifiableChannels() - Method in class ome.model.core.LogicalChannel

Returns an unmodifiable collection-view

unmodifiableChannels() - Method in class ome.model.core.Pixels

Returns an unmodifiable collection-view

unmodifiableChildFolders() - Method in class ome.model.containers.Folder

Returns an unmodifiable collection-view

unmodifiableDatasetLinks() - Method in class ome.model.containers.Project

Returns an unmodifiable collection-view

unmodifiableDatasetLinks() - Method in class ome.model.core.Image

Returns an unmodifiable collection-view

unmodifiableDetector() - Method in class ome.model.acquisition.Instrument

Returns an unmodifiable collection-view

unmodifiableDichroic() - Method in class ome.model.acquisition.Instrument

Returns an unmodifiable collection-view

unmodifiableEmissionFilterLink() - Method in class ome.model.acquisition.Filter

Returns an unmodifiable collection-view

unmodifiableEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet

Returns an unmodifiable collection-view

unmodifiableEmissionFilterLink() - Method in class ome.model.acquisition.LightPath

Returns an unmodifiable collection-view

unmodifiableEvents() - Method in class ome.model.meta.Session

Returns an unmodifiable collection-view

unmodifiableExcitationFilterLink() - Method in class ome.model.acquisition.Filter

Returns an unmodifiable collection-view

unmodifiableExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet

Returns an unmodifiable collection-view

unmodifiableExcitationFilterLink() - Method in class ome.model.acquisition.LightPath

Returns an unmodifiable collection-view

unmodifiableFilesetEntries() - Method in class ome.model.core.OriginalFile

Returns an unmodifiable collection-view

unmodifiableFilter() - Method in class ome.model.acquisition.Instrument

Returns an unmodifiable collection-view

unmodifiableFilterSet() - Method in class ome.model.acquisition.Instrument

Returns an unmodifiable collection-view

unmodifiableFolderLinks() - Method in class ome.model.core.Image

Returns an unmodifiable collection-view

unmodifiableFolderLinks() - Method in class ome.model.roi.Roi

Returns an unmodifiable collection-view

unmodifiableGroupExperimenterMap() - Method in class ome.model.meta.Experimenter

Returns an unmodifiable collection-view

unmodifiableGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup

Returns an unmodifiable collection-view

unmodifiableImageLinks() - Method in class ome.model.containers.Dataset

Returns an unmodifiable collection-view

unmodifiableImageLinks() - Method in class ome.model.containers.Folder

Returns an unmodifiable collection-view

unmodifiableImages() - Method in class ome.model.fs.Fileset

Returns an unmodifiable collection-view

unmodifiableJobLinks() - Method in class ome.model.fs.Fileset

Returns an unmodifiable collection-view

unmodifiableLightSource() - Method in class ome.model.acquisition.Instrument

Returns an unmodifiable collection-view

unmodifiableLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation

Returns an unmodifiable collection-view

unmodifiableLogs() - Method in class ome.model.meta.Event

Returns an unmodifiable collection-view

unmodifiableMicrobeamManipulation() - Method in class ome.model.experiment.Experiment

Returns an unmodifiable collection-view

unmodifiableObjective() - Method in class ome.model.acquisition.Instrument

Returns an unmodifiable collection-view

unmodifiableOriginalFileLinks() - Method in class ome.model.jobs.Job

Returns an unmodifiable collection-view

unmodifiableOtf() - Method in class ome.model.acquisition.Instrument

Returns an unmodifiable collection-view

unmodifiablePixels() - Method in class ome.model.core.Image

Returns an unmodifiable collection-view

unmodifiablePixelsFileMaps() - Method in class ome.model.core.OriginalFile

Returns an unmodifiable collection-view

unmodifiablePixelsFileMaps() - Method in class ome.model.core.Pixels

Returns an unmodifiable collection-view

unmodifiablePlaneInfo() - Method in class ome.model.core.Pixels

Returns an unmodifiable collection-view

unmodifiablePlateAcquisitions() - Method in class ome.model.screen.Plate

Returns an unmodifiable collection-view

unmodifiablePlateLinks() - Method in class ome.model.screen.Screen

Returns an unmodifiable collection-view

unmodifiableProjections() - Method in class ome.model.display.RenderingDef

Returns an unmodifiable collection-view

unmodifiableProjectLinks() - Method in class ome.model.containers.Dataset

Returns an unmodifiable collection-view

unmodifiableReagentLinks() - Method in class ome.model.screen.Well

Returns an unmodifiable collection-view

unmodifiableReagents() - Method in class ome.model.screen.Screen

Returns an unmodifiable collection-view

unmodifiableRoiLinks() - Method in class ome.model.containers.Folder

Returns an unmodifiable collection-view

unmodifiableRois() - Method in class ome.model.core.Image

Returns an unmodifiable collection-view

unmodifiableScreenLinks() - Method in class ome.model.screen.Plate

Returns an unmodifiable collection-view

unmodifiableSessions() - Method in class ome.model.meta.Node

Returns an unmodifiable collection-view

unmodifiableSettings() - Method in class ome.model.core.Pixels

Returns an unmodifiable collection-view

unmodifiableShapes() - Method in class ome.model.roi.Roi

Returns an unmodifiable collection-view

unmodifiableSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding

Returns an unmodifiable collection-view

unmodifiableThumbnails() - Method in class ome.model.core.Pixels

Returns an unmodifiable collection-view

unmodifiableUsedFiles() - Method in class ome.model.fs.Fileset

Returns an unmodifiable collection-view

unmodifiableWaveRendering() - Method in class ome.model.display.RenderingDef

Returns an unmodifiable collection-view

unmodifiableWellLinks() - Method in class ome.model.screen.Reagent

Returns an unmodifiable collection-view

unmodifiableWells() - Method in class ome.model.screen.Plate

Returns an unmodifiable collection-view

unmodifiableWellSample() - Method in class ome.model.screen.PlateAcquisition

Returns an unmodifiable collection-view

unmodifiableWellSamples() - Method in class ome.model.core.Image

Returns an unmodifiable collection-view

unmodifiableWellSamples() - Method in class ome.model.screen.Well

Returns an unmodifiable collection-view

unSet(Permissions.Flag) - Method in class ome.model.internal.Permissions

turn a given Permissions.Flag off.

up - Variable in class ome.model.meta.Node

UP - Static variable in class ome.model.meta.Node

updateConfiguration(String, String) - Method in class ome.util.actions.PostgresSqlAction

updateConfiguration(String, String) - Method in interface ome.util.SqlAction

UPDATEEVENT - Static variable in class ome.model.internal.Details

updateOrInsertConfigValue(String, String) - Method in class ome.util.SqlAction.Impl

updateOrInsertConfigValue(String, String) - Method in interface ome.util.SqlAction

updateRows(PersistentCollection, Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister

updateSessionUserIP(long, String) - Method in class ome.util.actions.PostgresSqlAction

updateSessionUserIP(long, String) - Method in interface ome.util.SqlAction

UploadJob - Class in ome.model.jobs

UploadJob() - Constructor for class ome.model.jobs.UploadJob

UploadJob(Long) - Constructor for class ome.model.jobs.UploadJob

UploadJob(Long, boolean) - Constructor for class ome.model.jobs.UploadJob

Main constructor.

upperLimit - Variable in class ome.model.display.PlaneSlicingContext

UPPERLIMIT - Static variable in class ome.model.display.PlaneSlicingContext

usedFiles - Variable in class ome.model.fs.Fileset

USEDFILES - Static variable in class ome.model.fs.Fileset

USER_IMMUTABLE - Static variable in class ome.model.internal.Permissions

R______ : user and only the user can only read

USER_PRIVATE - Static variable in class ome.model.internal.Permissions

RW____ : user and only user can read and write

USER_WRITEABLE - Static variable in class ome.model.internal.Permissions

RWR_R_ : all can read, user can write

userAgent - Variable in class ome.model.meta.Session

USERAGENT - Static variable in class ome.model.meta.Session

userIP - Variable in class ome.model.meta.Session

Deprecated.

USERIP - Static variable in class ome.model.meta.Session

Deprecated.

username - Variable in class ome.model.jobs.Job

USERNAME - Static variable in class ome.model.jobs.Job

Utils - Class in ome.util

various tools needed throughout Omero.

Utils() - Constructor for class ome.util.Utils

uuid - Variable in class ome.model.meta.ExternalInfo

UUID - Static variable in class ome.model.meta.ExternalInfo

uuid - Variable in class ome.model.meta.Node

UUID - Static variable in class ome.model.meta.Node

uuid - Variable in class ome.model.meta.Session

UUID - Static variable in class ome.model.meta.Session

V

VALID() - Static method in class ome.util.Validation

valid(Pixels) - Static method in class ome.util.Validator

validate() - Method in class ome.model.acquisition.Arc

validate() - Method in class ome.model.acquisition.Detector

validate() - Method in class ome.model.acquisition.DetectorSettings

validate() - Method in class ome.model.acquisition.Dichroic

validate() - Method in class ome.model.acquisition.Filament

validate() - Method in class ome.model.acquisition.Filter

validate() - Method in class ome.model.acquisition.FilterSet

validate() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink

validate() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink

validate() - Method in class ome.model.acquisition.GenericExcitationSource

validate() - Method in class ome.model.acquisition.ImagingEnvironment

validate() - Method in class ome.model.acquisition.Instrument

validate() - Method in class ome.model.acquisition.Laser

validate() - Method in class ome.model.acquisition.LightEmittingDiode

validate() - Method in class ome.model.acquisition.LightPath

validate() - Method in class ome.model.acquisition.LightPathEmissionFilterLink

validate() - Method in class ome.model.acquisition.LightPathExcitationFilterLink

validate() - Method in class ome.model.acquisition.LightSettings

validate() - Method in class ome.model.acquisition.LightSource

validate() - Method in class ome.model.acquisition.Microscope

validate() - Method in class ome.model.acquisition.Objective

validate() - Method in class ome.model.acquisition.ObjectiveSettings

validate() - Method in class ome.model.acquisition.OTF

validate() - Method in class ome.model.acquisition.StageLabel

validate() - Method in class ome.model.acquisition.TransmittanceRange

validate() - Method in class ome.model.annotations.Annotation

validate() - Method in class ome.model.annotations.AnnotationAnnotationLink

validate() - Method in class ome.model.annotations.BasicAnnotation

validate() - Method in class ome.model.annotations.BooleanAnnotation

validate() - Method in class ome.model.annotations.ChannelAnnotationLink

validate() - Method in class ome.model.annotations.CommentAnnotation

validate() - Method in class ome.model.annotations.DatasetAnnotationLink

validate() - Method in class ome.model.annotations.DetectorAnnotationLink

validate() - Method in class ome.model.annotations.DichroicAnnotationLink

validate() - Method in class ome.model.annotations.DoubleAnnotation

validate() - Method in class ome.model.annotations.ExperimenterAnnotationLink

validate() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink

validate() - Method in class ome.model.annotations.FileAnnotation

validate() - Method in class ome.model.annotations.FilesetAnnotationLink

validate() - Method in class ome.model.annotations.FilterAnnotationLink

validate() - Method in class ome.model.annotations.FolderAnnotationLink

validate() - Method in class ome.model.annotations.ImageAnnotationLink

validate() - Method in class ome.model.annotations.InstrumentAnnotationLink

validate() - Method in class ome.model.annotations.LightPathAnnotationLink

validate() - Method in class ome.model.annotations.LightSourceAnnotationLink

validate() - Method in class ome.model.annotations.ListAnnotation

validate() - Method in class ome.model.annotations.LongAnnotation

validate() - Method in class ome.model.annotations.MapAnnotation

validate() - Method in class ome.model.annotations.NamespaceAnnotationLink

validate() - Method in class ome.model.annotations.NodeAnnotationLink

validate() - Method in class ome.model.annotations.NumericAnnotation

validate() - Method in class ome.model.annotations.ObjectiveAnnotationLink

validate() - Method in class ome.model.annotations.OriginalFileAnnotationLink

validate() - Method in class ome.model.annotations.PlaneInfoAnnotationLink

validate() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink

validate() - Method in class ome.model.annotations.PlateAnnotationLink

validate() - Method in class ome.model.annotations.ProjectAnnotationLink

validate() - Method in class ome.model.annotations.ReagentAnnotationLink

validate() - Method in class ome.model.annotations.RoiAnnotationLink

validate() - Method in class ome.model.annotations.ScreenAnnotationLink

validate() - Method in class ome.model.annotations.SessionAnnotationLink

validate() - Method in class ome.model.annotations.ShapeAnnotationLink

validate() - Method in class ome.model.annotations.TagAnnotation

validate() - Method in class ome.model.annotations.TermAnnotation

validate() - Method in class ome.model.annotations.TextAnnotation

validate() - Method in class ome.model.annotations.TimestampAnnotation

validate() - Method in class ome.model.annotations.TypeAnnotation

validate() - Method in class ome.model.annotations.WellAnnotationLink

validate() - Method in class ome.model.annotations.XmlAnnotation

validate() - Method in class ome.model.containers.Dataset

validate() - Method in class ome.model.containers.DatasetImageLink

validate() - Method in class ome.model.containers.Folder

validate() - Method in class ome.model.containers.FolderImageLink

validate() - Method in class ome.model.containers.FolderRoiLink

validate() - Method in class ome.model.containers.Project

validate() - Method in class ome.model.containers.ProjectDatasetLink

validate() - Method in class ome.model.core.Channel

validate() - Method in class ome.model.core.Image

validate() - Method in class ome.model.core.LogicalChannel

validate() - Method in class ome.model.core.OriginalFile

validate() - Method in class ome.model.core.Pixels

validate() - Method in class ome.model.core.PixelsOriginalFileMap

validate() - Method in class ome.model.core.PlaneInfo

validate() - Method in class ome.model.display.ChannelBinding

validate() - Method in class ome.model.display.CodomainMapContext

validate() - Method in class ome.model.display.ContrastStretchingContext

validate() - Method in class ome.model.display.PlaneSlicingContext

validate() - Method in class ome.model.display.ProjectionDef

validate() - Method in class ome.model.display.QuantumDef

validate() - Method in class ome.model.display.RenderingDef

validate() - Method in class ome.model.display.ReverseIntensityContext

validate() - Method in class ome.model.display.Thumbnail

validate() - Method in class ome.model.enums.AcquisitionMode

validate() - Method in class ome.model.enums.AdminPrivilege

validate() - Method in class ome.model.enums.ArcType

validate() - Method in class ome.model.enums.Binning

validate() - Method in class ome.model.enums.ChecksumAlgorithm

validate() - Method in class ome.model.enums.ContrastMethod

validate() - Method in class ome.model.enums.Correction

validate() - Method in class ome.model.enums.DetectorType

validate() - Method in class ome.model.enums.DimensionOrder

validate() - Method in class ome.model.enums.EventType

validate() - Method in class ome.model.enums.ExperimentType

validate() - Method in class ome.model.enums.Family

validate() - Method in class ome.model.enums.FilamentType

validate() - Method in class ome.model.enums.FilterType

validate() - Method in class ome.model.enums.Format

validate() - Method in class ome.model.enums.Illumination

validate() - Method in class ome.model.enums.Immersion

validate() - Method in class ome.model.enums.LaserMedium

validate() - Method in class ome.model.enums.LaserType

validate() - Method in class ome.model.enums.Medium

validate() - Method in class ome.model.enums.MicrobeamManipulationType

validate() - Method in class ome.model.enums.MicroscopeType

validate() - Method in class ome.model.enums.PhotometricInterpretation

validate() - Method in class ome.model.enums.PixelsType

validate() - Method in class ome.model.enums.ProjectionAxis

validate() - Method in class ome.model.enums.ProjectionType

validate() - Method in class ome.model.enums.Pulse

validate() - Method in class ome.model.enums.RenderingModel

validate() - Method in class ome.model.experiment.Experiment

validate() - Method in class ome.model.experiment.MicrobeamManipulation

validate() - Method in class ome.model.fs.Fileset

validate() - Method in class ome.model.fs.FilesetEntry

validate() - Method in class ome.model.fs.FilesetJobLink

validate() - Method in class ome.model.internal.Link

validate() - Method in interface ome.model.IObject

calls the class-specific validator for this instance and returns the Validation object.

validate() - Method in class ome.model.jobs.ImportJob

Deprecated.

validate() - Method in class ome.model.jobs.IndexingJob

validate() - Method in class ome.model.jobs.IntegrityCheckJob

validate() - Method in class ome.model.jobs.Job

validate() - Method in class ome.model.jobs.JobOriginalFileLink

validate() - Method in class ome.model.jobs.JobStatus

validate() - Method in class ome.model.jobs.MetadataImportJob

validate() - Method in class ome.model.jobs.ParseJob

validate() - Method in class ome.model.jobs.PixelDataJob

validate() - Method in class ome.model.jobs.ScriptJob

validate() - Method in class ome.model.jobs.ThumbnailGenerationJob

validate() - Method in class ome.model.jobs.UploadJob

validate() - Method in class ome.model.meta.DBPatch

validate() - Method in class ome.model.meta.Event

validate() - Method in class ome.model.meta.EventLog

validate() - Method in class ome.model.meta.Experimenter

validate() - Method in class ome.model.meta.ExperimenterGroup

validate() - Method in class ome.model.meta.ExternalInfo

validate() - Method in class ome.model.meta.GroupExperimenterMap

validate() - Method in class ome.model.meta.Namespace

validate() - Method in class ome.model.meta.Node

validate() - Method in class ome.model.meta.Session

validate() - Method in class ome.model.meta.Share

validate() - Method in class ome.model.meta.ShareMember

validate() - Method in class ome.model.roi.AffineTransform

validate() - Method in class ome.model.roi.Ellipse

validate() - Method in class ome.model.roi.Label

validate() - Method in class ome.model.roi.Line

validate() - Method in class ome.model.roi.Mask

validate() - Method in class ome.model.roi.Path

Deprecated.

validate() - Method in class ome.model.roi.Point

validate() - Method in class ome.model.roi.Polygon

validate() - Method in class ome.model.roi.Polyline

validate() - Method in class ome.model.roi.Rectangle

validate() - Method in class ome.model.roi.Roi

validate() - Method in class ome.model.roi.Shape

validate() - Method in class ome.model.screen.Plate

validate() - Method in class ome.model.screen.PlateAcquisition

validate() - Method in class ome.model.screen.Reagent

validate() - Method in class ome.model.screen.Screen

validate() - Method in class ome.model.screen.ScreenPlateLink

validate() - Method in class ome.model.screen.Well

validate() - Method in class ome.model.screen.WellReagentLink

validate() - Method in class ome.model.screen.WellSample

validate() - Method in class ome.model.stats.StatsInfo

validate() - Method in class ome.util.PermDetails

validate(IObject) - Static method in class ome.util.Validator

validate(Channel) - Static method in class ome.util.Validator

validate(ImagingEnvironment) - Static method in class ome.util.Validator

Validation - Class in ome.util

collector for Model-validation status.

Validation() - Constructor for class ome.util.Validation

ValidationException - Exception in ome.conditions

More specific ApiUsageException, in that the specification of your data as outlined in the OME specification is incorrect.

ValidationException(String) - Constructor for exception ome.conditions.ValidationException

Validator - Class in ome.util

tests of model objects for validity.

Validator() - Constructor for class ome.util.Validator

value - Variable in class ome.model.enums.AcquisitionMode

VALUE - Static variable in class ome.model.enums.AcquisitionMode

value - Variable in class ome.model.enums.AdminPrivilege

VALUE - Static variable in class ome.model.enums.AdminPrivilege

value - Variable in class ome.model.enums.ArcType

VALUE - Static variable in class ome.model.enums.ArcType

value - Variable in class ome.model.enums.Binning

VALUE - Static variable in class ome.model.enums.Binning

value - Variable in class ome.model.enums.ChecksumAlgorithm

VALUE - Static variable in class ome.model.enums.ChecksumAlgorithm

value - Variable in class ome.model.enums.ContrastMethod

VALUE - Static variable in class ome.model.enums.ContrastMethod

value - Variable in class ome.model.enums.Correction

VALUE - Static variable in class ome.model.enums.Correction

value - Variable in class ome.model.enums.DetectorType

VALUE - Static variable in class ome.model.enums.DetectorType

value - Variable in class ome.model.enums.DimensionOrder

VALUE - Static variable in class ome.model.enums.DimensionOrder

value - Variable in class ome.model.enums.EventType

VALUE - Static variable in class ome.model.enums.EventType

value - Variable in class ome.model.enums.ExperimentType

VALUE - Static variable in class ome.model.enums.ExperimentType

value - Variable in class ome.model.enums.Family

VALUE - Static variable in class ome.model.enums.Family

value - Variable in class ome.model.enums.FilamentType

VALUE - Static variable in class ome.model.enums.FilamentType

value - Variable in class ome.model.enums.FilterType

VALUE - Static variable in class ome.model.enums.FilterType

value - Variable in class ome.model.enums.Format

VALUE - Static variable in class ome.model.enums.Format

value - Variable in class ome.model.enums.Illumination

VALUE - Static variable in class ome.model.enums.Illumination

value - Variable in class ome.model.enums.Immersion

VALUE - Static variable in class ome.model.enums.Immersion

value - Variable in class ome.model.enums.LaserMedium

VALUE - Static variable in class ome.model.enums.LaserMedium

value - Variable in class ome.model.enums.LaserType

VALUE - Static variable in class ome.model.enums.LaserType

value - Variable in class ome.model.enums.Medium

VALUE - Static variable in class ome.model.enums.Medium

value - Variable in class ome.model.enums.MicrobeamManipulationType

VALUE - Static variable in class ome.model.enums.MicrobeamManipulationType

value - Variable in class ome.model.enums.MicroscopeType

VALUE - Static variable in class ome.model.enums.MicroscopeType

value - Variable in class ome.model.enums.PhotometricInterpretation

VALUE - Static variable in class ome.model.enums.PhotometricInterpretation

value - Variable in class ome.model.enums.PixelsType

VALUE - Static variable in class ome.model.enums.PixelsType

value - Variable in class ome.model.enums.ProjectionAxis

VALUE - Static variable in class ome.model.enums.ProjectionAxis

value - Variable in class ome.model.enums.ProjectionType

VALUE - Static variable in class ome.model.enums.ProjectionType

value - Variable in class ome.model.enums.Pulse

VALUE - Static variable in class ome.model.enums.Pulse

value - Variable in class ome.model.enums.RenderingModel

VALUE - Static variable in class ome.model.enums.RenderingModel

value - Variable in class ome.model.jobs.JobStatus

VALUE - Static variable in class ome.model.jobs.JobStatus

VALUE - Static variable in class ome.model.units.ElectricPotential

VALUE - Static variable in class ome.model.units.Frequency

VALUE - Static variable in class ome.model.units.Length

VALUE - Static variable in class ome.model.units.Power

VALUE - Static variable in class ome.model.units.Pressure

VALUE - Static variable in class ome.model.units.Temperature

VALUE - Static variable in class ome.model.units.Time

value - Variable in class ome.parameters.QueryParameter

VALUE_1X1 - Static variable in class ome.model.enums.Binning

VALUE_2X2 - Static variable in class ome.model.enums.Binning

VALUE_4X4 - Static variable in class ome.model.enums.Binning

VALUE_8X8 - Static variable in class ome.model.enums.Binning

VALUE_ACHRO - Static variable in class ome.model.enums.Correction

VALUE_ACHROMAT - Static variable in class ome.model.enums.Correction

VALUE_ADLER_32 - Static variable in class ome.model.enums.ChecksumAlgorithm

VALUE_AG - Static variable in class ome.model.enums.LaserMedium

VALUE_AIR - Static variable in class ome.model.enums.Immersion

VALUE_AIR - Static variable in class ome.model.enums.Medium

VALUE_ALEXANDRITE - Static variable in class ome.model.enums.LaserMedium

VALUE_ANALOG_VIDEO - Static variable in class ome.model.enums.DetectorType

VALUE_APD - Static variable in class ome.model.enums.DetectorType

VALUE_APO - Static variable in class ome.model.enums.Correction

VALUE_AR - Static variable in class ome.model.enums.LaserMedium

VALUE_AR_CL - Static variable in class ome.model.enums.LaserMedium

VALUE_AR_FL - Static variable in class ome.model.enums.LaserMedium

VALUE_ARGB - Static variable in class ome.model.enums.PhotometricInterpretation

VALUE_BAND_PASS - Static variable in class ome.model.enums.FilterType

VALUE_BIT - Static variable in class ome.model.enums.PixelsType

VALUE_BRIGHT_FIELD - Static variable in class ome.model.enums.AcquisitionMode

VALUE_BRIGHTFIELD - Static variable in class ome.model.enums.ContrastMethod

VALUE_CANCELLED - Static variable in class ome.model.jobs.JobStatus

VALUE_CCD - Static variable in class ome.model.enums.DetectorType

VALUE_CHGRP - Static variable in class ome.model.enums.AdminPrivilege

VALUE_CHOWN - Static variable in class ome.model.enums.AdminPrivilege

VALUE_CMOS - Static variable in class ome.model.enums.DetectorType

VALUE_CMYK - Static variable in class ome.model.enums.PhotometricInterpretation

VALUE_CO - Static variable in class ome.model.enums.LaserMedium

VALUE_CO2 - Static variable in class ome.model.enums.LaserMedium

VALUE_COLOCALIZATION - Static variable in class ome.model.enums.ExperimentType

VALUE_COLOR_MAP - Static variable in class ome.model.enums.PhotometricInterpretation

VALUE_COMPLEX - Static variable in class ome.model.enums.PixelsType

VALUE_CORRELATION_SPECTROSCOPY - Static variable in class ome.model.enums.DetectorType

VALUE_COUMARIN_C30 - Static variable in class ome.model.enums.LaserMedium

VALUE_CRC_32 - Static variable in class ome.model.enums.ChecksumAlgorithm

VALUE_CU - Static variable in class ome.model.enums.LaserMedium

VALUE_CW - Static variable in class ome.model.enums.Pulse

VALUE_DARKFIELD - Static variable in class ome.model.enums.ContrastMethod

VALUE_DELETE_FILE - Static variable in class ome.model.enums.AdminPrivilege

VALUE_DELETE_MANAGED_REPO - Static variable in class ome.model.enums.AdminPrivilege

VALUE_DELETE_OWNED - Static variable in class ome.model.enums.AdminPrivilege

VALUE_DELETE_SCRIPT_REPO - Static variable in class ome.model.enums.AdminPrivilege

VALUE_DIC - Static variable in class ome.model.enums.ContrastMethod

VALUE_DICHROIC - Static variable in class ome.model.enums.FilterType

VALUE_DISSECTION - Static variable in class ome.model.enums.MicroscopeType

VALUE_DOUBLE - Static variable in class ome.model.enums.PixelsType

VALUE_DOUBLE_COMPLEX - Static variable in class ome.model.enums.PixelsType

VALUE_DYE - Static variable in class ome.model.enums.LaserType

VALUE_EBCCD - Static variable in class ome.model.enums.DetectorType

VALUE_ELECTROPHYSIOLOGY - Static variable in class ome.model.enums.ExperimentType

VALUE_ELECTROPHYSIOLOGY - Static variable in class ome.model.enums.MicroscopeType

VALUE_EM_CCD - Static variable in class ome.model.enums.DetectorType

VALUE_EMINUS - Static variable in class ome.model.enums.LaserMedium

VALUE_EPIFLUORESCENCE - Static variable in class ome.model.enums.Illumination

VALUE_ER_GLASS - Static variable in class ome.model.enums.LaserMedium

VALUE_ER_YAG - Static variable in class ome.model.enums.LaserMedium

VALUE_ERROR - Static variable in class ome.model.jobs.JobStatus

VALUE_EXCIMER - Static variable in class ome.model.enums.LaserType

VALUE_EXPONENTIAL - Static variable in class ome.model.enums.Family

VALUE_FILE_SIZE_64 - Static variable in class ome.model.enums.ChecksumAlgorithm

VALUE_FINISHED - Static variable in class ome.model.jobs.JobStatus

VALUE_FISH - Static variable in class ome.model.enums.ExperimentType

VALUE_FL - Static variable in class ome.model.enums.Correction

VALUE_FLIP - Static variable in class ome.model.enums.MicrobeamManipulationType

VALUE_FLOAT - Static variable in class ome.model.enums.PixelsType

VALUE_FLUAR - Static variable in class ome.model.enums.Correction

VALUE_FLUOR - Static variable in class ome.model.enums.Correction

VALUE_FLUORESCENCE - Static variable in class ome.model.enums.ContrastMethod

VALUE_FLUORESCENCE_CORRELATION_SPECTROSCOPY - Static variable in class ome.model.enums.AcquisitionMode

VALUE_FLUORESCENCE_LIFETIME - Static variable in class ome.model.enums.AcquisitionMode

VALUE_FLUORESCENCE_LIFETIME - Static variable in class ome.model.enums.ExperimentType

VALUE_FLUOTAR - Static variable in class ome.model.enums.Correction

VALUE_FOUR_DPLUS - Static variable in class ome.model.enums.ExperimentType

VALUE_FP - Static variable in class ome.model.enums.ExperimentType

VALUE_FRAP - Static variable in class ome.model.enums.MicrobeamManipulationType

VALUE_FREE_ELECTRON - Static variable in class ome.model.enums.LaserType

VALUE_FRET - Static variable in class ome.model.enums.ExperimentType

VALUE_FSM - Static variable in class ome.model.enums.AcquisitionMode

VALUE_FTIR - Static variable in class ome.model.enums.DetectorType

VALUE_FULL_TEXT - Static variable in class ome.model.enums.EventType

VALUE_GA_AL_AS - Static variable in class ome.model.enums.LaserMedium

VALUE_GA_AS - Static variable in class ome.model.enums.LaserMedium

VALUE_GAS - Static variable in class ome.model.enums.LaserType

VALUE_GLYCEROL - Static variable in class ome.model.enums.Immersion

VALUE_GLYCEROL - Static variable in class ome.model.enums.Medium

VALUE_GREYSCALE - Static variable in class ome.model.enums.RenderingModel

VALUE_H2O - Static variable in class ome.model.enums.LaserMedium

VALUE_HALOGEN - Static variable in class ome.model.enums.FilamentType

VALUE_HE_CD - Static variable in class ome.model.enums.LaserMedium

VALUE_HE_NE - Static variable in class ome.model.enums.LaserMedium

VALUE_HFL - Static variable in class ome.model.enums.LaserMedium

VALUE_HG - Static variable in class ome.model.enums.ArcType

VALUE_HG_XE - Static variable in class ome.model.enums.ArcType

VALUE_HO_YAG - Static variable in class ome.model.enums.LaserMedium

VALUE_HO_YLF - Static variable in class ome.model.enums.LaserMedium

VALUE_HOFFMAN_MODULATION - Static variable in class ome.model.enums.ContrastMethod

VALUE_HSV - Static variable in class ome.model.enums.PhotometricInterpretation

VALUE_IMMUNOCYTOCHEMISTRY - Static variable in class ome.model.enums.ExperimentType

VALUE_IMMUNOFLUORESCENCE - Static variable in class ome.model.enums.ExperimentType

VALUE_IMPORT - Static variable in class ome.model.enums.EventType

VALUE_INCANDESCENT - Static variable in class ome.model.enums.FilamentType

VALUE_INT16 - Static variable in class ome.model.enums.PixelsType

VALUE_INT32 - Static variable in class ome.model.enums.PixelsType

VALUE_INT8 - Static variable in class ome.model.enums.PixelsType

VALUE_INTENSIFIED_CCD - Static variable in class ome.model.enums.DetectorType

VALUE_INTERNAL - Static variable in class ome.model.enums.EventType

VALUE_INVERSE_FRAP - Static variable in class ome.model.enums.MicrobeamManipulationType

VALUE_INVERTED - Static variable in class ome.model.enums.MicroscopeType

VALUE_ION_IMAGING - Static variable in class ome.model.enums.ExperimentType

VALUE_KR - Static variable in class ome.model.enums.LaserMedium

VALUE_KR_CL - Static variable in class ome.model.enums.LaserMedium

VALUE_KR_FL - Static variable in class ome.model.enums.LaserMedium

VALUE_LASER_SCANNING_CONFOCAL_MICROSCOPY - Static variable in class ome.model.enums.AcquisitionMode

VALUE_LCM - Static variable in class ome.model.enums.AcquisitionMode

VALUE_LIFETIME_IMAGING - Static variable in class ome.model.enums.DetectorType

VALUE_LINEAR - Static variable in class ome.model.enums.Family

VALUE_LOGARITHMIC - Static variable in class ome.model.enums.Family

VALUE_LONG_PASS - Static variable in class ome.model.enums.FilterType

VALUE_MAXIMUM - Static variable in class ome.model.enums.ProjectionType

VALUE_MD5_128 - Static variable in class ome.model.enums.ChecksumAlgorithm

VALUE_MEAN - Static variable in class ome.model.enums.ProjectionType

VALUE_METAL_VAPOR - Static variable in class ome.model.enums.LaserType

VALUE_MODE_LOCKED - Static variable in class ome.model.enums.Pulse

VALUE_MODIFY_GROUP - Static variable in class ome.model.enums.AdminPrivilege

VALUE_MODIFY_GROUP_MEMBERSHIP - Static variable in class ome.model.enums.AdminPrivilege

VALUE_MODIFY_USER - Static variable in class ome.model.enums.AdminPrivilege

VALUE_MODULO_T - Static variable in class ome.model.enums.ProjectionAxis

VALUE_MODULO_Z - Static variable in class ome.model.enums.ProjectionAxis

VALUE_MONOCHROME - Static variable in class ome.model.enums.PhotometricInterpretation

VALUE_MULTI - Static variable in class ome.model.enums.Immersion

VALUE_MULTI_PASS - Static variable in class ome.model.enums.FilterType

VALUE_MULTI_PHOTON_MICROSCOPY - Static variable in class ome.model.enums.AcquisitionMode

VALUE_MURMUR3_128 - Static variable in class ome.model.enums.ChecksumAlgorithm

VALUE_MURMUR3_32 - Static variable in class ome.model.enums.ChecksumAlgorithm

VALUE_N - Static variable in class ome.model.enums.LaserMedium

VALUE_ND_GLASS - Static variable in class ome.model.enums.LaserMedium

VALUE_ND_YAG - Static variable in class ome.model.enums.LaserMedium

VALUE_NEAR_FIELD_SCANNING_OPTICAL_MICROSCOPY - Static variable in class ome.model.enums.AcquisitionMode

VALUE_NEOFLUAR - Static variable in class ome.model.enums.Correction

VALUE_NEUTRAL_DENSITY - Static variable in class ome.model.enums.FilterType

VALUE_NON_LINEAR - Static variable in class ome.model.enums.Illumination

VALUE_OBLIQUE - Static variable in class ome.model.enums.Illumination

VALUE_OBLIQUE_ILLUMINATION - Static variable in class ome.model.enums.ContrastMethod

VALUE_OIL - Static variable in class ome.model.enums.Immersion

VALUE_OIL - Static variable in class ome.model.enums.Medium

VALUE_OPTICAL_TRAPPING - Static variable in class ome.model.enums.MicrobeamManipulationType

VALUE_OTHER - Static variable in class ome.model.enums.AcquisitionMode

VALUE_OTHER - Static variable in class ome.model.enums.ArcType

VALUE_OTHER - Static variable in class ome.model.enums.ContrastMethod

VALUE_OTHER - Static variable in class ome.model.enums.Correction

VALUE_OTHER - Static variable in class ome.model.enums.DetectorType

VALUE_OTHER - Static variable in class ome.model.enums.ExperimentType

VALUE_OTHER - Static variable in class ome.model.enums.FilamentType

VALUE_OTHER - Static variable in class ome.model.enums.FilterType

VALUE_OTHER - Static variable in class ome.model.enums.Illumination

VALUE_OTHER - Static variable in class ome.model.enums.Immersion

VALUE_OTHER - Static variable in class ome.model.enums.LaserMedium

VALUE_OTHER - Static variable in class ome.model.enums.LaserType

VALUE_OTHER - Static variable in class ome.model.enums.Medium

VALUE_OTHER - Static variable in class ome.model.enums.MicrobeamManipulationType

VALUE_OTHER - Static variable in class ome.model.enums.MicroscopeType

VALUE_OTHER - Static variable in class ome.model.enums.Pulse

VALUE_PALM - Static variable in class ome.model.enums.AcquisitionMode

VALUE_PGIDOCUMENTATION - Static variable in class ome.model.enums.ExperimentType

VALUE_PHASE - Static variable in class ome.model.enums.ContrastMethod

VALUE_PHOTOABLATION - Static variable in class ome.model.enums.MicrobeamManipulationType

VALUE_PHOTOACTIVATION - Static variable in class ome.model.enums.MicrobeamManipulationType

VALUE_PHOTOBLEACHING - Static variable in class ome.model.enums.ExperimentType

VALUE_PHOTODIODE - Static variable in class ome.model.enums.DetectorType

VALUE_PLAN_APO - Static variable in class ome.model.enums.Correction

VALUE_PLAN_FLUOR - Static variable in class ome.model.enums.Correction

VALUE_PMT - Static variable in class ome.model.enums.DetectorType

VALUE_POLARIZED_LIGHT - Static variable in class ome.model.enums.ContrastMethod

VALUE_POLYNOMIAL - Static variable in class ome.model.enums.Family

VALUE_PROCESSING - Static variable in class ome.model.enums.EventType

VALUE_QSWITCHED - Static variable in class ome.model.enums.Pulse

VALUE_QUEUED - Static variable in class ome.model.jobs.JobStatus

VALUE_READ_SESSION - Static variable in class ome.model.enums.AdminPrivilege

VALUE_REPETITIVE - Static variable in class ome.model.enums.Pulse

VALUE_REQUEUED - Static variable in class ome.model.jobs.JobStatus

VALUE_RESUBMITTED - Static variable in class ome.model.jobs.JobStatus

VALUE_RGB - Static variable in class ome.model.enums.PhotometricInterpretation

VALUE_RGB - Static variable in class ome.model.enums.RenderingModel

VALUE_RHODAMINE6G - Static variable in class ome.model.enums.LaserMedium

VALUE_RUBY - Static variable in class ome.model.enums.LaserMedium

VALUE_RUNNING - Static variable in class ome.model.jobs.JobStatus

VALUE_SCREEN - Static variable in class ome.model.enums.ExperimentType

VALUE_SECOND_HARMONIC_GENERATION_IMAGING - Static variable in class ome.model.enums.AcquisitionMode

VALUE_SEMICONDUCTOR - Static variable in class ome.model.enums.LaserType

VALUE_SESSIONS - Static variable in class ome.model.enums.EventType

VALUE_SHA1_160 - Static variable in class ome.model.enums.ChecksumAlgorithm

VALUE_SHOOLA - Static variable in class ome.model.enums.EventType

VALUE_SHORT_PASS - Static variable in class ome.model.enums.FilterType

VALUE_SINGLE - Static variable in class ome.model.enums.Pulse

VALUE_SINGLE_MOLECULE_IMAGING - Static variable in class ome.model.enums.AcquisitionMode

VALUE_SLIT_SCAN_CONFOCAL - Static variable in class ome.model.enums.AcquisitionMode

VALUE_SOLID_STATE - Static variable in class ome.model.enums.LaserType

VALUE_SPECTRAL_IMAGING - Static variable in class ome.model.enums.AcquisitionMode

VALUE_SPECTRAL_IMAGING - Static variable in class ome.model.enums.ExperimentType

VALUE_SPECTROSCOPY - Static variable in class ome.model.enums.DetectorType

VALUE_SPIM - Static variable in class ome.model.enums.AcquisitionMode

VALUE_SPINNING_DISK_CONFOCAL - Static variable in class ome.model.enums.AcquisitionMode

VALUE_STED - Static variable in class ome.model.enums.AcquisitionMode

VALUE_STORM - Static variable in class ome.model.enums.AcquisitionMode

VALUE_STRUCTURED_ILLUMINATION - Static variable in class ome.model.enums.AcquisitionMode

VALUE_SUBMITTED - Static variable in class ome.model.jobs.JobStatus

VALUE_SUDO - Static variable in class ome.model.enums.AdminPrivilege

VALUE_SUM - Static variable in class ome.model.enums.ProjectionType

VALUE_SUPER_FLUOR - Static variable in class ome.model.enums.Correction

VALUE_SWEPT_FIELD_CONFOCAL - Static variable in class ome.model.enums.AcquisitionMode

VALUE_T - Static variable in class ome.model.enums.ProjectionAxis

VALUE_TASK - Static variable in class ome.model.enums.EventType

VALUE_TEST - Static variable in class ome.model.enums.EventType

VALUE_TI_SAPPHIRE - Static variable in class ome.model.enums.LaserMedium

VALUE_TIME_LAPSE - Static variable in class ome.model.enums.ExperimentType

VALUE_TIRF - Static variable in class ome.model.enums.AcquisitionMode

VALUE_TOTAL_INTERNAL_REFLECTION - Static variable in class ome.model.enums.AcquisitionMode

VALUE_TRANSMITTED - Static variable in class ome.model.enums.Illumination

VALUE_TUNEABLE - Static variable in class ome.model.enums.FilterType

VALUE_UINT16 - Static variable in class ome.model.enums.PixelsType

VALUE_UINT32 - Static variable in class ome.model.enums.PixelsType

VALUE_UINT8 - Static variable in class ome.model.enums.PixelsType

VALUE_UNCAGING - Static variable in class ome.model.enums.MicrobeamManipulationType

VALUE_UNKNOWN - Static variable in class ome.model.enums.AcquisitionMode

VALUE_UNKNOWN - Static variable in class ome.model.enums.ArcType

VALUE_UNKNOWN - Static variable in class ome.model.enums.ContrastMethod

VALUE_UNKNOWN - Static variable in class ome.model.enums.Correction

VALUE_UNKNOWN - Static variable in class ome.model.enums.DetectorType

VALUE_UNKNOWN - Static variable in class ome.model.enums.ExperimentType

VALUE_UNKNOWN - Static variable in class ome.model.enums.FilamentType

VALUE_UNKNOWN - Static variable in class ome.model.enums.FilterType

VALUE_UNKNOWN - Static variable in class ome.model.enums.Illumination

VALUE_UNKNOWN - Static variable in class ome.model.enums.Immersion

VALUE_UNKNOWN - Static variable in class ome.model.enums.LaserMedium

VALUE_UNKNOWN - Static variable in class ome.model.enums.LaserType

VALUE_UNKNOWN - Static variable in class ome.model.enums.Medium

VALUE_UNKNOWN - Static variable in class ome.model.enums.MicrobeamManipulationType

VALUE_UNKNOWN - Static variable in class ome.model.enums.MicroscopeType

VALUE_UNKNOWN - Static variable in class ome.model.enums.Pulse

VALUE_UPRIGHT - Static variable in class ome.model.enums.MicroscopeType

VALUE_USER - Static variable in class ome.model.enums.EventType

VALUE_UV - Static variable in class ome.model.enums.Correction

VALUE_VIOLET_CORRECTED - Static variable in class ome.model.enums.Correction

VALUE_WAITING - Static variable in class ome.model.jobs.JobStatus

VALUE_WATER - Static variable in class ome.model.enums.Immersion

VALUE_WATER - Static variable in class ome.model.enums.Medium

VALUE_WATER_DIPPING - Static variable in class ome.model.enums.Immersion

VALUE_WIDE_FIELD - Static variable in class ome.model.enums.AcquisitionMode

VALUE_WRITE_FILE - Static variable in class ome.model.enums.AdminPrivilege

VALUE_WRITE_MANAGED_REPO - Static variable in class ome.model.enums.AdminPrivilege

VALUE_WRITE_OWNED - Static variable in class ome.model.enums.AdminPrivilege

VALUE_WRITE_SCRIPT_REPO - Static variable in class ome.model.enums.AdminPrivilege

VALUE_XE - Static variable in class ome.model.enums.ArcType

VALUE_XE - Static variable in class ome.model.enums.LaserMedium

VALUE_XE_BR - Static variable in class ome.model.enums.LaserMedium

VALUE_XE_CL - Static variable in class ome.model.enums.LaserMedium

VALUE_XE_FL - Static variable in class ome.model.enums.LaserMedium

VALUE_XYCTZ - Static variable in class ome.model.enums.DimensionOrder

VALUE_XYCZT - Static variable in class ome.model.enums.DimensionOrder

VALUE_XYTCZ - Static variable in class ome.model.enums.DimensionOrder

VALUE_XYTZC - Static variable in class ome.model.enums.DimensionOrder

VALUE_XYZCT - Static variable in class ome.model.enums.DimensionOrder

VALUE_XYZTC - Static variable in class ome.model.enums.DimensionOrder

VALUE_Z - Static variable in class ome.model.enums.ProjectionAxis

valueOf(String) - Static method in enum ome.model.enums.UnitsElectricPotential

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.model.enums.UnitsFrequency

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.model.enums.UnitsLength

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.model.enums.UnitsPower

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.model.enums.UnitsPressure

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.model.enums.UnitsTemperature

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.model.enums.UnitsTime

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.model.internal.Permissions.Flag

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.model.internal.Permissions.Right

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.model.internal.Permissions.Role

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.model.units.UNITS

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum ome.util.PrivilegedStringTypeDescriptor.Filter

Returns the enum constant of this type with the specified name.

values() - Static method in enum ome.model.enums.UnitsElectricPotential

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.model.enums.UnitsFrequency

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.model.enums.UnitsLength

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.model.enums.UnitsPower

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.model.enums.UnitsPressure

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.model.enums.UnitsTemperature

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.model.enums.UnitsTime

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.model.internal.Permissions.Flag

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.model.internal.Permissions.Right

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.model.internal.Permissions.Role

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.model.units.UNITS

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum ome.util.PrivilegedStringTypeDescriptor.Filter

Returns an array containing the constants of this enum type, in the order they are declared.

VERSION - Static variable in class ome.model.acquisition.Detector

version - Variable in class ome.model.acquisition.Detector

VERSION - Static variable in class ome.model.acquisition.DetectorSettings

version - Variable in class ome.model.acquisition.DetectorSettings

VERSION - Static variable in class ome.model.acquisition.Dichroic

version - Variable in class ome.model.acquisition.Dichroic

VERSION - Static variable in class ome.model.acquisition.Filter

version - Variable in class ome.model.acquisition.Filter

VERSION - Static variable in class ome.model.acquisition.FilterSet

version - Variable in class ome.model.acquisition.FilterSet

VERSION - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink

version - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink

VERSION - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink

version - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink

VERSION - Static variable in class ome.model.acquisition.ImagingEnvironment

version - Variable in class ome.model.acquisition.ImagingEnvironment

VERSION - Static variable in class ome.model.acquisition.Instrument

version - Variable in class ome.model.acquisition.Instrument

VERSION - Static variable in class ome.model.acquisition.LightPath

version - Variable in class ome.model.acquisition.LightPath

VERSION - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink

version - Variable in class ome.model.acquisition.LightPathEmissionFilterLink

VERSION - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink

version - Variable in class ome.model.acquisition.LightPathExcitationFilterLink

VERSION - Static variable in class ome.model.acquisition.LightSettings

version - Variable in class ome.model.acquisition.LightSettings

VERSION - Static variable in class ome.model.acquisition.LightSource

version - Variable in class ome.model.acquisition.LightSource

VERSION - Static variable in class ome.model.acquisition.Microscope

version - Variable in class ome.model.acquisition.Microscope

VERSION - Static variable in class ome.model.acquisition.Objective

version - Variable in class ome.model.acquisition.Objective

VERSION - Static variable in class ome.model.acquisition.ObjectiveSettings

version - Variable in class ome.model.acquisition.ObjectiveSettings

VERSION - Static variable in class ome.model.acquisition.OTF

version - Variable in class ome.model.acquisition.OTF

VERSION - Static variable in class ome.model.acquisition.StageLabel

version - Variable in class ome.model.acquisition.StageLabel

VERSION - Static variable in class ome.model.acquisition.TransmittanceRange

version - Variable in class ome.model.acquisition.TransmittanceRange

VERSION - Static variable in class ome.model.annotations.Annotation

version - Variable in class ome.model.annotations.Annotation

VERSION - Static variable in class ome.model.annotations.AnnotationAnnotationLink

version - Variable in class ome.model.annotations.AnnotationAnnotationLink

VERSION - Static variable in class ome.model.annotations.ChannelAnnotationLink

version - Variable in class ome.model.annotations.ChannelAnnotationLink

VERSION - Static variable in class ome.model.annotations.DatasetAnnotationLink

version - Variable in class ome.model.annotations.DatasetAnnotationLink

VERSION - Static variable in class ome.model.annotations.DetectorAnnotationLink

version - Variable in class ome.model.annotations.DetectorAnnotationLink

VERSION - Static variable in class ome.model.annotations.DichroicAnnotationLink

version - Variable in class ome.model.annotations.DichroicAnnotationLink

VERSION - Static variable in class ome.model.annotations.ExperimenterAnnotationLink

version - Variable in class ome.model.annotations.ExperimenterAnnotationLink

VERSION - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

version - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

VERSION - Static variable in class ome.model.annotations.FilesetAnnotationLink

version - Variable in class ome.model.annotations.FilesetAnnotationLink

VERSION - Static variable in class ome.model.annotations.FilterAnnotationLink

version - Variable in class ome.model.annotations.FilterAnnotationLink

VERSION - Static variable in class ome.model.annotations.FolderAnnotationLink

version - Variable in class ome.model.annotations.FolderAnnotationLink

VERSION - Static variable in class ome.model.annotations.ImageAnnotationLink

version - Variable in class ome.model.annotations.ImageAnnotationLink

VERSION - Static variable in class ome.model.annotations.InstrumentAnnotationLink

version - Variable in class ome.model.annotations.InstrumentAnnotationLink

VERSION - Static variable in class ome.model.annotations.LightPathAnnotationLink

version - Variable in class ome.model.annotations.LightPathAnnotationLink

VERSION - Static variable in class ome.model.annotations.LightSourceAnnotationLink

version - Variable in class ome.model.annotations.LightSourceAnnotationLink

VERSION - Static variable in class ome.model.annotations.NamespaceAnnotationLink

version - Variable in class ome.model.annotations.NamespaceAnnotationLink

VERSION - Static variable in class ome.model.annotations.NodeAnnotationLink

version - Variable in class ome.model.annotations.NodeAnnotationLink

VERSION - Static variable in class ome.model.annotations.ObjectiveAnnotationLink

version - Variable in class ome.model.annotations.ObjectiveAnnotationLink

VERSION - Static variable in class ome.model.annotations.OriginalFileAnnotationLink

version - Variable in class ome.model.annotations.OriginalFileAnnotationLink

VERSION - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink

version - Variable in class ome.model.annotations.PlaneInfoAnnotationLink

VERSION - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

version - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

VERSION - Static variable in class ome.model.annotations.PlateAnnotationLink

version - Variable in class ome.model.annotations.PlateAnnotationLink

VERSION - Static variable in class ome.model.annotations.ProjectAnnotationLink

version - Variable in class ome.model.annotations.ProjectAnnotationLink

VERSION - Static variable in class ome.model.annotations.ReagentAnnotationLink

version - Variable in class ome.model.annotations.ReagentAnnotationLink

VERSION - Static variable in class ome.model.annotations.RoiAnnotationLink

version - Variable in class ome.model.annotations.RoiAnnotationLink

VERSION - Static variable in class ome.model.annotations.ScreenAnnotationLink

version - Variable in class ome.model.annotations.ScreenAnnotationLink

VERSION - Static variable in class ome.model.annotations.SessionAnnotationLink

version - Variable in class ome.model.annotations.SessionAnnotationLink

VERSION - Static variable in class ome.model.annotations.ShapeAnnotationLink

version - Variable in class ome.model.annotations.ShapeAnnotationLink

VERSION - Static variable in class ome.model.annotations.WellAnnotationLink

version - Variable in class ome.model.annotations.WellAnnotationLink

VERSION - Static variable in class ome.model.containers.Dataset

version - Variable in class ome.model.containers.Dataset

VERSION - Static variable in class ome.model.containers.DatasetImageLink

version - Variable in class ome.model.containers.DatasetImageLink

VERSION - Static variable in class ome.model.containers.Folder

version - Variable in class ome.model.containers.Folder

VERSION - Static variable in class ome.model.containers.FolderImageLink

version - Variable in class ome.model.containers.FolderImageLink

VERSION - Static variable in class ome.model.containers.FolderRoiLink

version - Variable in class ome.model.containers.FolderRoiLink

VERSION - Static variable in class ome.model.containers.Project

version - Variable in class ome.model.containers.Project

VERSION - Static variable in class ome.model.containers.ProjectDatasetLink

version - Variable in class ome.model.containers.ProjectDatasetLink

VERSION - Static variable in class ome.model.core.Channel

version - Variable in class ome.model.core.Channel

VERSION - Static variable in class ome.model.core.Image

version - Variable in class ome.model.core.Image

VERSION - Static variable in class ome.model.core.LogicalChannel

version - Variable in class ome.model.core.LogicalChannel

VERSION - Static variable in class ome.model.core.OriginalFile

version - Variable in class ome.model.core.OriginalFile

VERSION - Static variable in class ome.model.core.Pixels

version - Variable in class ome.model.core.Pixels

VERSION - Static variable in class ome.model.core.PixelsOriginalFileMap

version - Variable in class ome.model.core.PixelsOriginalFileMap

VERSION - Static variable in class ome.model.core.PlaneInfo

version - Variable in class ome.model.core.PlaneInfo

VERSION - Static variable in class ome.model.display.ChannelBinding

version - Variable in class ome.model.display.ChannelBinding

VERSION - Static variable in class ome.model.display.CodomainMapContext

version - Variable in class ome.model.display.CodomainMapContext

VERSION - Static variable in class ome.model.display.ProjectionDef

version - Variable in class ome.model.display.ProjectionDef

VERSION - Static variable in class ome.model.display.QuantumDef

version - Variable in class ome.model.display.QuantumDef

VERSION - Static variable in class ome.model.display.RenderingDef

version - Variable in class ome.model.display.RenderingDef

VERSION - Static variable in class ome.model.display.Thumbnail

version - Variable in class ome.model.display.Thumbnail

VERSION - Static variable in class ome.model.experiment.Experiment

version - Variable in class ome.model.experiment.Experiment

VERSION - Static variable in class ome.model.experiment.MicrobeamManipulation

version - Variable in class ome.model.experiment.MicrobeamManipulation

VERSION - Static variable in class ome.model.fs.Fileset

version - Variable in class ome.model.fs.Fileset

VERSION - Static variable in class ome.model.fs.FilesetEntry

version - Variable in class ome.model.fs.FilesetEntry

VERSION - Static variable in class ome.model.fs.FilesetJobLink

version - Variable in class ome.model.fs.FilesetJobLink

VERSION - Static variable in class ome.model.internal.Link

version - Variable in class ome.model.internal.Link

VERSION - Static variable in class ome.model.jobs.Job

version - Variable in class ome.model.jobs.Job

VERSION - Static variable in class ome.model.jobs.JobOriginalFileLink

version - Variable in class ome.model.jobs.JobOriginalFileLink

VERSION - Static variable in class ome.model.meta.Experimenter

version - Variable in class ome.model.meta.Experimenter

VERSION - Static variable in class ome.model.meta.ExperimenterGroup

version - Variable in class ome.model.meta.ExperimenterGroup

VERSION - Static variable in class ome.model.meta.GroupExperimenterMap

version - Variable in class ome.model.meta.GroupExperimenterMap

VERSION - Static variable in class ome.model.meta.Namespace

version - Variable in class ome.model.meta.Namespace

VERSION - Static variable in class ome.model.meta.Node

version - Variable in class ome.model.meta.Node

VERSION - Static variable in class ome.model.meta.Session

version - Variable in class ome.model.meta.Session

VERSION - Static variable in class ome.model.meta.ShareMember

version - Variable in class ome.model.meta.ShareMember

VERSION - Static variable in class ome.model.roi.AffineTransform

version - Variable in class ome.model.roi.AffineTransform

VERSION - Static variable in class ome.model.roi.Roi

version - Variable in class ome.model.roi.Roi

VERSION - Static variable in class ome.model.roi.Shape

version - Variable in class ome.model.roi.Shape

VERSION - Static variable in class ome.model.screen.Plate

version - Variable in class ome.model.screen.Plate

VERSION - Static variable in class ome.model.screen.PlateAcquisition

version - Variable in class ome.model.screen.PlateAcquisition

VERSION - Static variable in class ome.model.screen.Reagent

version - Variable in class ome.model.screen.Reagent

VERSION - Static variable in class ome.model.screen.Screen

version - Variable in class ome.model.screen.Screen

VERSION - Static variable in class ome.model.screen.ScreenPlateLink

version - Variable in class ome.model.screen.ScreenPlateLink

VERSION - Static variable in class ome.model.screen.Well

version - Variable in class ome.model.screen.Well

VERSION - Static variable in class ome.model.screen.WellReagentLink

version - Variable in class ome.model.screen.WellReagentLink

VERSION - Static variable in class ome.model.screen.WellSample

version - Variable in class ome.model.screen.WellSample

VERSION - Static variable in class ome.model.stats.StatsInfo

version - Variable in class ome.model.stats.StatsInfo

versionInfo - Variable in class ome.model.jobs.MetadataImportJob

VERSIONINFO - Static variable in class ome.model.jobs.MetadataImportJob

versionInfo - Variable in class ome.model.jobs.UploadJob

VERSIONINFO - Static variable in class ome.model.jobs.UploadJob

voltage - Variable in class ome.model.acquisition.Detector

VOLTAGE - Static variable in class ome.model.acquisition.Detector

voltage - Variable in class ome.model.acquisition.DetectorSettings

VOLTAGE - Static variable in class ome.model.acquisition.DetectorSettings

W

waveIncrement - Variable in class ome.model.core.Pixels

WAVEINCREMENT - Static variable in class ome.model.core.Pixels

wavelength - Variable in class ome.model.acquisition.Laser

WAVELENGTH - Static variable in class ome.model.acquisition.Laser

wavelength - Variable in class ome.model.acquisition.LightSettings

WAVELENGTH - Static variable in class ome.model.acquisition.LightSettings

waveRendering - Variable in class ome.model.display.RenderingDef

WAVERENDERING - Static variable in class ome.model.display.RenderingDef

waveStart - Variable in class ome.model.core.Pixels

WAVESTART - Static variable in class ome.model.core.Pixels

Well - Class in ome.model.screen

These filter definitions are used by the security system to eliminate non-readable objects from queries.

Well() - Constructor for class ome.model.screen.Well

Well(Long) - Constructor for class ome.model.screen.Well

Well(Long, boolean) - Constructor for class ome.model.screen.Well

Main constructor.

Well(Plate) - Constructor for class ome.model.screen.Well

well - Variable in class ome.model.screen.WellSample

WELL - Static variable in class ome.model.screen.WellSample

Well.Details - Class in ome.model.screen

WellAnnotationLink - Class in ome.model.annotations

These filter definitions are used by the security system to eliminate non-readable objects from queries.

WellAnnotationLink() - Constructor for class ome.model.annotations.WellAnnotationLink

WellAnnotationLink(Long) - Constructor for class ome.model.annotations.WellAnnotationLink

WellAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.WellAnnotationLink

Main constructor.

WellAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.WellAnnotationLink

WellAnnotationLink.Details - Class in ome.model.annotations

wellLinks - Variable in class ome.model.screen.Reagent

WELLLINKS - Static variable in class ome.model.screen.Reagent

WELLLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Reagent

wellOriginX - Variable in class ome.model.screen.Plate

WELLORIGINX - Static variable in class ome.model.screen.Plate

wellOriginY - Variable in class ome.model.screen.Plate

WELLORIGINY - Static variable in class ome.model.screen.Plate

WellReagentLink - Class in ome.model.screen

These filter definitions are used by the security system to eliminate non-readable objects from queries.

WellReagentLink() - Constructor for class ome.model.screen.WellReagentLink

WellReagentLink(Long) - Constructor for class ome.model.screen.WellReagentLink

WellReagentLink(Long, boolean) - Constructor for class ome.model.screen.WellReagentLink

Main constructor.

WellReagentLink(IObject, IObject) - Constructor for class ome.model.screen.WellReagentLink

WellReagentLink.Details - Class in ome.model.screen

wells - Variable in class ome.model.screen.Plate

WELLS - Static variable in class ome.model.screen.Plate

wellSample - Variable in class ome.model.screen.PlateAcquisition

WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition

WellSample - Class in ome.model.screen

These filter definitions are used by the security system to eliminate non-readable objects from queries.

WellSample() - Constructor for class ome.model.screen.WellSample

WellSample(Long) - Constructor for class ome.model.screen.WellSample

WellSample(Long, boolean) - Constructor for class ome.model.screen.WellSample

Main constructor.

WellSample(Well, Image) - Constructor for class ome.model.screen.WellSample

WellSample.Details - Class in ome.model.screen

wellSamples - Variable in class ome.model.core.Image

WELLSAMPLES - Static variable in class ome.model.core.Image

wellSamples - Variable in class ome.model.screen.Well

WELLSAMPLES - Static variable in class ome.model.screen.Well

width - Variable in class ome.model.roi.Mask

WIDTH - Static variable in class ome.model.roi.Mask

width - Variable in class ome.model.roi.Rectangle

WIDTH - Static variable in class ome.model.roi.Rectangle

workingDistance - Variable in class ome.model.acquisition.Objective

WORKINGDISTANCE - Static variable in class ome.model.acquisition.Objective

WORLD_IMMUTABLE - Static variable in class ome.model.internal.Permissions

R_R_R_ : all can only read

WORLD_WRITEABLE - Static variable in class ome.model.internal.Permissions

RWRWRW : everyone can read and write

wrap(X, WrapperOptions) - Method in class ome.util.PrivilegedStringTypeDescriptor

X

x - Variable in class ome.model.roi.Ellipse

X - Static variable in class ome.model.roi.Ellipse

x - Variable in class ome.model.roi.Label

X - Static variable in class ome.model.roi.Label

x - Variable in class ome.model.roi.Mask

X - Static variable in class ome.model.roi.Mask

x - Variable in class ome.model.roi.Point

X - Static variable in class ome.model.roi.Point

x - Variable in class ome.model.roi.Rectangle

X - Static variable in class ome.model.roi.Rectangle

x1 - Variable in class ome.model.roi.Line

X1 - Static variable in class ome.model.roi.Line

x2 - Variable in class ome.model.roi.Line

X2 - Static variable in class ome.model.roi.Line

xend - Variable in class ome.model.display.ContrastStretchingContext

XEND - Static variable in class ome.model.display.ContrastStretchingContext

XmlAnnotation - Class in ome.model.annotations

XmlAnnotation() - Constructor for class ome.model.annotations.XmlAnnotation

XmlAnnotation(Long) - Constructor for class ome.model.annotations.XmlAnnotation

XmlAnnotation(Long, boolean) - Constructor for class ome.model.annotations.XmlAnnotation

Main constructor.

xstart - Variable in class ome.model.display.ContrastStretchingContext

XSTART - Static variable in class ome.model.display.ContrastStretchingContext

Y

y - Variable in class ome.model.roi.Ellipse

Y - Static variable in class ome.model.roi.Ellipse

y - Variable in class ome.model.roi.Label

Y - Static variable in class ome.model.roi.Label

y - Variable in class ome.model.roi.Mask

Y - Static variable in class ome.model.roi.Mask

y - Variable in class ome.model.roi.Point

Y - Static variable in class ome.model.roi.Point

y - Variable in class ome.model.roi.Rectangle

Y - Static variable in class ome.model.roi.Rectangle

y1 - Variable in class ome.model.roi.Line

Y1 - Static variable in class ome.model.roi.Line

y2 - Variable in class ome.model.roi.Line

Y2 - Static variable in class ome.model.roi.Line

yend - Variable in class ome.model.display.ContrastStretchingContext

YEND - Static variable in class ome.model.display.ContrastStretchingContext

ystart - Variable in class ome.model.display.ContrastStretchingContext

YSTART - Static variable in class ome.model.display.ContrastStretchingContext

Z

zoom - Variable in class ome.model.acquisition.Detector

ZOOM - Static variable in class ome.model.acquisition.Detector

zoom - Variable in class ome.model.acquisition.DetectorSettings

ZOOM - Static variable in class ome.model.acquisition.DetectorSettings

_

_cache - Variable in class ome.util.ContextFilter

_context - Variable in class ome.model.internal.Details

_context - Variable in class ome.util.ContextFilter

_creation - Variable in class ome.model.internal.Details

_dynamicFields - Variable in class ome.model.acquisition.Detector

_dynamicFields - Variable in class ome.model.acquisition.DetectorSettings

_dynamicFields - Variable in class ome.model.acquisition.Dichroic

_dynamicFields - Variable in class ome.model.acquisition.Filter

_dynamicFields - Variable in class ome.model.acquisition.FilterSet

_dynamicFields - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink

_dynamicFields - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink

_dynamicFields - Variable in class ome.model.acquisition.ImagingEnvironment

_dynamicFields - Variable in class ome.model.acquisition.Instrument

_dynamicFields - Variable in class ome.model.acquisition.LightPath

_dynamicFields - Variable in class ome.model.acquisition.LightPathEmissionFilterLink

_dynamicFields - Variable in class ome.model.acquisition.LightPathExcitationFilterLink

_dynamicFields - Variable in class ome.model.acquisition.LightSettings

_dynamicFields - Variable in class ome.model.acquisition.LightSource

_dynamicFields - Variable in class ome.model.acquisition.Microscope

_dynamicFields - Variable in class ome.model.acquisition.Objective

_dynamicFields - Variable in class ome.model.acquisition.ObjectiveSettings

_dynamicFields - Variable in class ome.model.acquisition.OTF

_dynamicFields - Variable in class ome.model.acquisition.StageLabel

_dynamicFields - Variable in class ome.model.acquisition.TransmittanceRange

_dynamicFields - Variable in class ome.model.annotations.Annotation

_dynamicFields - Variable in class ome.model.annotations.AnnotationAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.ChannelAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.DatasetAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.DetectorAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.DichroicAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.ExperimenterAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.FilesetAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.FilterAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.FolderAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.ImageAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.InstrumentAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.LightPathAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.LightSourceAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.NamespaceAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.NodeAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.ObjectiveAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.OriginalFileAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.PlaneInfoAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.PlateAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.ProjectAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.ReagentAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.RoiAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.ScreenAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.SessionAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.ShapeAnnotationLink

_dynamicFields - Variable in class ome.model.annotations.WellAnnotationLink

_dynamicFields - Variable in class ome.model.containers.Dataset

_dynamicFields - Variable in class ome.model.containers.DatasetImageLink

_dynamicFields - Variable in class ome.model.containers.Folder

_dynamicFields - Variable in class ome.model.containers.FolderImageLink

_dynamicFields - Variable in class ome.model.containers.FolderRoiLink

_dynamicFields - Variable in class ome.model.containers.Project

_dynamicFields - Variable in class ome.model.containers.ProjectDatasetLink

_dynamicFields - Variable in class ome.model.core.Channel

_dynamicFields - Variable in class ome.model.core.Image

_dynamicFields - Variable in class ome.model.core.LogicalChannel

_dynamicFields - Variable in class ome.model.core.OriginalFile

_dynamicFields - Variable in class ome.model.core.Pixels

_dynamicFields - Variable in class ome.model.core.PixelsOriginalFileMap

_dynamicFields - Variable in class ome.model.core.PlaneInfo

_dynamicFields - Variable in class ome.model.display.ChannelBinding

_dynamicFields - Variable in class ome.model.display.CodomainMapContext

_dynamicFields - Variable in class ome.model.display.ProjectionDef

_dynamicFields - Variable in class ome.model.display.QuantumDef

_dynamicFields - Variable in class ome.model.display.RenderingDef

_dynamicFields - Variable in class ome.model.display.Thumbnail

_dynamicFields - Variable in class ome.model.enums.AcquisitionMode

_dynamicFields - Variable in class ome.model.enums.AdminPrivilege

_dynamicFields - Variable in class ome.model.enums.ArcType

_dynamicFields - Variable in class ome.model.enums.Binning

_dynamicFields - Variable in class ome.model.enums.ChecksumAlgorithm

_dynamicFields - Variable in class ome.model.enums.ContrastMethod

_dynamicFields - Variable in class ome.model.enums.Correction

_dynamicFields - Variable in class ome.model.enums.DetectorType

_dynamicFields - Variable in class ome.model.enums.DimensionOrder

_dynamicFields - Variable in class ome.model.enums.EventType

_dynamicFields - Variable in class ome.model.enums.ExperimentType

_dynamicFields - Variable in class ome.model.enums.Family

_dynamicFields - Variable in class ome.model.enums.FilamentType

_dynamicFields - Variable in class ome.model.enums.FilterType

_dynamicFields - Variable in class ome.model.enums.Format

_dynamicFields - Variable in class ome.model.enums.Illumination

_dynamicFields - Variable in class ome.model.enums.Immersion

_dynamicFields - Variable in class ome.model.enums.LaserMedium

_dynamicFields - Variable in class ome.model.enums.LaserType

_dynamicFields - Variable in class ome.model.enums.Medium

_dynamicFields - Variable in class ome.model.enums.MicrobeamManipulationType

_dynamicFields - Variable in class ome.model.enums.MicroscopeType

_dynamicFields - Variable in class ome.model.enums.PhotometricInterpretation

_dynamicFields - Variable in class ome.model.enums.PixelsType

_dynamicFields - Variable in class ome.model.enums.ProjectionAxis

_dynamicFields - Variable in class ome.model.enums.ProjectionType

_dynamicFields - Variable in class ome.model.enums.Pulse

_dynamicFields - Variable in class ome.model.enums.RenderingModel

_dynamicFields - Variable in class ome.model.experiment.Experiment

_dynamicFields - Variable in class ome.model.experiment.MicrobeamManipulation

_dynamicFields - Variable in class ome.model.fs.Fileset

_dynamicFields - Variable in class ome.model.fs.FilesetEntry

_dynamicFields - Variable in class ome.model.fs.FilesetJobLink

_dynamicFields - Variable in class ome.model.internal.Details

_dynamicFields - Variable in class ome.model.internal.Link

_dynamicFields - Variable in class ome.model.jobs.Job

_dynamicFields - Variable in class ome.model.jobs.JobOriginalFileLink

_dynamicFields - Variable in class ome.model.jobs.JobStatus

_dynamicFields - Variable in class ome.model.meta.DBPatch

_dynamicFields - Variable in class ome.model.meta.Event

_dynamicFields - Variable in class ome.model.meta.EventLog

_dynamicFields - Variable in class ome.model.meta.Experimenter

_dynamicFields - Variable in class ome.model.meta.ExperimenterGroup

_dynamicFields - Variable in class ome.model.meta.ExternalInfo

_dynamicFields - Variable in class ome.model.meta.GroupExperimenterMap

_dynamicFields - Variable in class ome.model.meta.Namespace

_dynamicFields - Variable in class ome.model.meta.Node

_dynamicFields - Variable in class ome.model.meta.Session

_dynamicFields - Variable in class ome.model.meta.ShareMember

_dynamicFields - Variable in class ome.model.roi.AffineTransform

_dynamicFields - Variable in class ome.model.roi.Roi

_dynamicFields - Variable in class ome.model.roi.Shape

_dynamicFields - Variable in class ome.model.screen.Plate

_dynamicFields - Variable in class ome.model.screen.PlateAcquisition

_dynamicFields - Variable in class ome.model.screen.Reagent

_dynamicFields - Variable in class ome.model.screen.Screen

_dynamicFields - Variable in class ome.model.screen.ScreenPlateLink

_dynamicFields - Variable in class ome.model.screen.Well

_dynamicFields - Variable in class ome.model.screen.WellReagentLink

_dynamicFields - Variable in class ome.model.screen.WellSample

_dynamicFields - Variable in class ome.model.stats.StatsInfo

_externalInfo - Variable in class ome.model.internal.Details

_filteredCollections - Variable in class ome.model.internal.Details

_group - Variable in class ome.model.internal.Details

_jdbc() - Method in class ome.util.actions.PostgresSqlAction

_jdbc() - Method in class ome.util.SqlAction.Impl

_loaded - Variable in class ome.model.acquisition.Detector

_loaded - Variable in class ome.model.acquisition.DetectorSettings

_loaded - Variable in class ome.model.acquisition.Dichroic

_loaded - Variable in class ome.model.acquisition.Filter

_loaded - Variable in class ome.model.acquisition.FilterSet

_loaded - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink

_loaded - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink

_loaded - Variable in class ome.model.acquisition.ImagingEnvironment

_loaded - Variable in class ome.model.acquisition.Instrument

_loaded - Variable in class ome.model.acquisition.LightPath

_loaded - Variable in class ome.model.acquisition.LightPathEmissionFilterLink

_loaded - Variable in class ome.model.acquisition.LightPathExcitationFilterLink

_loaded - Variable in class ome.model.acquisition.LightSettings

_loaded - Variable in class ome.model.acquisition.LightSource

_loaded - Variable in class ome.model.acquisition.Microscope

_loaded - Variable in class ome.model.acquisition.Objective

_loaded - Variable in class ome.model.acquisition.ObjectiveSettings

_loaded - Variable in class ome.model.acquisition.OTF

_loaded - Variable in class ome.model.acquisition.StageLabel

_loaded - Variable in class ome.model.acquisition.TransmittanceRange

_loaded - Variable in class ome.model.annotations.Annotation

_loaded - Variable in class ome.model.annotations.AnnotationAnnotationLink

_loaded - Variable in class ome.model.annotations.ChannelAnnotationLink

_loaded - Variable in class ome.model.annotations.DatasetAnnotationLink

_loaded - Variable in class ome.model.annotations.DetectorAnnotationLink

_loaded - Variable in class ome.model.annotations.DichroicAnnotationLink

_loaded - Variable in class ome.model.annotations.ExperimenterAnnotationLink

_loaded - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink

_loaded - Variable in class ome.model.annotations.FilesetAnnotationLink

_loaded - Variable in class ome.model.annotations.FilterAnnotationLink

_loaded - Variable in class ome.model.annotations.FolderAnnotationLink

_loaded - Variable in class ome.model.annotations.ImageAnnotationLink

_loaded - Variable in class ome.model.annotations.InstrumentAnnotationLink

_loaded - Variable in class ome.model.annotations.LightPathAnnotationLink

_loaded - Variable in class ome.model.annotations.LightSourceAnnotationLink

_loaded - Variable in class ome.model.annotations.NamespaceAnnotationLink

_loaded - Variable in class ome.model.annotations.NodeAnnotationLink

_loaded - Variable in class ome.model.annotations.ObjectiveAnnotationLink

_loaded - Variable in class ome.model.annotations.OriginalFileAnnotationLink

_loaded - Variable in class ome.model.annotations.PlaneInfoAnnotationLink

_loaded - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink

_loaded - Variable in class ome.model.annotations.PlateAnnotationLink

_loaded - Variable in class ome.model.annotations.ProjectAnnotationLink

_loaded - Variable in class ome.model.annotations.ReagentAnnotationLink

_loaded - Variable in class ome.model.annotations.RoiAnnotationLink

_loaded - Variable in class ome.model.annotations.ScreenAnnotationLink

_loaded - Variable in class ome.model.annotations.SessionAnnotationLink

_loaded - Variable in class ome.model.annotations.ShapeAnnotationLink

_loaded - Variable in class ome.model.annotations.WellAnnotationLink

_loaded - Variable in class ome.model.containers.Dataset

_loaded - Variable in class ome.model.containers.DatasetImageLink

_loaded - Variable in class ome.model.containers.Folder

_loaded - Variable in class ome.model.containers.FolderImageLink

_loaded - Variable in class ome.model.containers.FolderRoiLink

_loaded - Variable in class ome.model.containers.Project

_loaded - Variable in class ome.model.containers.ProjectDatasetLink

_loaded - Variable in class ome.model.core.Channel

_loaded - Variable in class ome.model.core.Image

_loaded - Variable in class ome.model.core.LogicalChannel

_loaded - Variable in class ome.model.core.OriginalFile

_loaded - Variable in class ome.model.core.Pixels

_loaded - Variable in class ome.model.core.PixelsOriginalFileMap

_loaded - Variable in class ome.model.core.PlaneInfo

_loaded - Variable in class ome.model.display.ChannelBinding

_loaded - Variable in class ome.model.display.CodomainMapContext

_loaded - Variable in class ome.model.display.ProjectionDef

_loaded - Variable in class ome.model.display.QuantumDef

_loaded - Variable in class ome.model.display.RenderingDef

_loaded - Variable in class ome.model.display.Thumbnail

_loaded - Variable in class ome.model.enums.AcquisitionMode

_loaded - Variable in class ome.model.enums.AdminPrivilege

_loaded - Variable in class ome.model.enums.ArcType

_loaded - Variable in class ome.model.enums.Binning

_loaded - Variable in class ome.model.enums.ChecksumAlgorithm

_loaded - Variable in class ome.model.enums.ContrastMethod

_loaded - Variable in class ome.model.enums.Correction

_loaded - Variable in class ome.model.enums.DetectorType

_loaded - Variable in class ome.model.enums.DimensionOrder

_loaded - Variable in class ome.model.enums.EventType

_loaded - Variable in class ome.model.enums.ExperimentType

_loaded - Variable in class ome.model.enums.Family

_loaded - Variable in class ome.model.enums.FilamentType

_loaded - Variable in class ome.model.enums.FilterType

_loaded - Variable in class ome.model.enums.Format

_loaded - Variable in class ome.model.enums.Illumination

_loaded - Variable in class ome.model.enums.Immersion

_loaded - Variable in class ome.model.enums.LaserMedium

_loaded - Variable in class ome.model.enums.LaserType

_loaded - Variable in class ome.model.enums.Medium

_loaded - Variable in class ome.model.enums.MicrobeamManipulationType

_loaded - Variable in class ome.model.enums.MicroscopeType

_loaded - Variable in class ome.model.enums.PhotometricInterpretation

_loaded - Variable in class ome.model.enums.PixelsType

_loaded - Variable in class ome.model.enums.ProjectionAxis

_loaded - Variable in class ome.model.enums.ProjectionType

_loaded - Variable in class ome.model.enums.Pulse

_loaded - Variable in class ome.model.enums.RenderingModel

_loaded - Variable in class ome.model.experiment.Experiment

_loaded - Variable in class ome.model.experiment.MicrobeamManipulation

_loaded - Variable in class ome.model.fs.Fileset

_loaded - Variable in class ome.model.fs.FilesetEntry

_loaded - Variable in class ome.model.fs.FilesetJobLink

_loaded - Variable in class ome.model.internal.Link

_loaded - Variable in class ome.model.jobs.Job

_loaded - Variable in class ome.model.jobs.JobOriginalFileLink

_loaded - Variable in class ome.model.jobs.JobStatus

_loaded - Variable in class ome.model.meta.DBPatch

_loaded - Variable in class ome.model.meta.Event

_loaded - Variable in class ome.model.meta.EventLog

_loaded - Variable in class ome.model.meta.Experimenter

_loaded - Variable in class ome.model.meta.ExperimenterGroup

_loaded - Variable in class ome.model.meta.ExternalInfo

_loaded - Variable in class ome.model.meta.GroupExperimenterMap

_loaded - Variable in class ome.model.meta.Namespace

_loaded - Variable in class ome.model.meta.Node

_loaded - Variable in class ome.model.meta.Session

_loaded - Variable in class ome.model.meta.ShareMember

_loaded - Variable in class ome.model.roi.AffineTransform

_loaded - Variable in class ome.model.roi.Roi

_loaded - Variable in class ome.model.roi.Shape

_loaded - Variable in class ome.model.screen.Plate

_loaded - Variable in class ome.model.screen.PlateAcquisition

_loaded - Variable in class ome.model.screen.Reagent

_loaded - Variable in class ome.model.screen.Screen

_loaded - Variable in class ome.model.screen.ScreenPlateLink

_loaded - Variable in class ome.model.screen.Well

_loaded - Variable in class ome.model.screen.WellReagentLink

_loaded - Variable in class ome.model.screen.WellSample

_loaded - Variable in class ome.model.stats.StatsInfo

_lookup(String) - Method in class ome.util.actions.PostgresSqlAction

_lookup(String) - Method in class ome.util.SqlAction.Impl

_namedJdbc() - Method in class ome.util.actions.PostgresSqlAction

_namedJdbc() - Method in class ome.util.SqlAction.Impl

_owner - Variable in class ome.model.internal.Details

_perms - Variable in class ome.model.internal.Details

_update - Variable in class ome.model.internal.Details

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