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A

a00 - Variable in class ome.model.roi.AffineTransform
 
A00 - Static variable in class ome.model.roi.AffineTransform
 
a01 - Variable in class ome.model.roi.AffineTransform
 
A01 - Static variable in class ome.model.roi.AffineTransform
 
a02 - Variable in class ome.model.roi.AffineTransform
 
A02 - Static variable in class ome.model.roi.AffineTransform
 
a10 - Variable in class ome.model.roi.AffineTransform
 
A10 - Static variable in class ome.model.roi.AffineTransform
 
a11 - Variable in class ome.model.roi.AffineTransform
 
A11 - Static variable in class ome.model.roi.AffineTransform
 
a12 - Variable in class ome.model.roi.AffineTransform
 
A12 - Static variable in class ome.model.roi.AffineTransform
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Arc
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Detector
 
acceptFilter(Filter) - Method in class ome.model.acquisition.DetectorSettings
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Dichroic
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Filament
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Filter
 
acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSet
 
acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
acceptFilter(Filter) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
acceptFilter(Filter) - Method in class ome.model.acquisition.GenericExcitationSource
 
acceptFilter(Filter) - Method in class ome.model.acquisition.ImagingEnvironment
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Instrument
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Laser
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightEmittingDiode
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightPath
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightSettings
 
acceptFilter(Filter) - Method in class ome.model.acquisition.LightSource
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Microscope
 
acceptFilter(Filter) - Method in class ome.model.acquisition.Objective
 
acceptFilter(Filter) - Method in class ome.model.acquisition.ObjectiveSettings
 
acceptFilter(Filter) - Method in class ome.model.acquisition.OTF
 
acceptFilter(Filter) - Method in class ome.model.acquisition.StageLabel
 
acceptFilter(Filter) - Method in class ome.model.acquisition.TransmittanceRange
 
acceptFilter(Filter) - Method in class ome.model.annotations.Annotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.BasicAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.BooleanAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.ChannelAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.CommentAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.DatasetAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.DetectorAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.DichroicAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.DoubleAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.FileAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.FilesetAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.FilterAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.FolderAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ImageAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.LightPathAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ListAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.LongAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.MapAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.NodeAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.NumericAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.PlateAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ProjectAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ReagentAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.RoiAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ScreenAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.SessionAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.ShapeAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.TagAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.TermAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.TextAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.TimestampAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.TypeAnnotation
 
acceptFilter(Filter) - Method in class ome.model.annotations.WellAnnotationLink
 
acceptFilter(Filter) - Method in class ome.model.annotations.XmlAnnotation
 
acceptFilter(Filter) - Method in class ome.model.containers.Dataset
 
acceptFilter(Filter) - Method in class ome.model.containers.DatasetImageLink
 
acceptFilter(Filter) - Method in class ome.model.containers.Folder
 
acceptFilter(Filter) - Method in class ome.model.containers.FolderImageLink
 
acceptFilter(Filter) - Method in class ome.model.containers.FolderRoiLink
 
acceptFilter(Filter) - Method in class ome.model.containers.Project
 
acceptFilter(Filter) - Method in class ome.model.containers.ProjectDatasetLink
 
acceptFilter(Filter) - Method in class ome.model.core.Channel
 
acceptFilter(Filter) - Method in class ome.model.core.Image
 
acceptFilter(Filter) - Method in class ome.model.core.LogicalChannel
 
acceptFilter(Filter) - Method in class ome.model.core.OriginalFile
 
acceptFilter(Filter) - Method in class ome.model.core.Pixels
 
acceptFilter(Filter) - Method in class ome.model.core.PixelsOriginalFileMap
 
acceptFilter(Filter) - Method in class ome.model.core.PlaneInfo
 
acceptFilter(Filter) - Method in class ome.model.display.ChannelBinding
 
acceptFilter(Filter) - Method in class ome.model.display.CodomainMapContext
 
acceptFilter(Filter) - Method in class ome.model.display.ContrastStretchingContext
 
acceptFilter(Filter) - Method in class ome.model.display.PlaneSlicingContext
 
acceptFilter(Filter) - Method in class ome.model.display.ProjectionDef
 
acceptFilter(Filter) - Method in class ome.model.display.QuantumDef
 
acceptFilter(Filter) - Method in class ome.model.display.RenderingDef
 
acceptFilter(Filter) - Method in class ome.model.display.ReverseIntensityContext
 
acceptFilter(Filter) - Method in class ome.model.display.Thumbnail
 
acceptFilter(Filter) - Method in class ome.model.enums.AcquisitionMode
 
acceptFilter(Filter) - Method in class ome.model.enums.AdminPrivilege
 
acceptFilter(Filter) - Method in class ome.model.enums.ArcType
 
acceptFilter(Filter) - Method in class ome.model.enums.Binning
 
acceptFilter(Filter) - Method in class ome.model.enums.ChecksumAlgorithm
 
acceptFilter(Filter) - Method in class ome.model.enums.ContrastMethod
 
acceptFilter(Filter) - Method in class ome.model.enums.Correction
 
acceptFilter(Filter) - Method in class ome.model.enums.DetectorType
 
acceptFilter(Filter) - Method in class ome.model.enums.DimensionOrder
 
acceptFilter(Filter) - Method in class ome.model.enums.EventType
 
acceptFilter(Filter) - Method in class ome.model.enums.ExperimentType
 
acceptFilter(Filter) - Method in class ome.model.enums.Family
 
acceptFilter(Filter) - Method in class ome.model.enums.FilamentType
 
acceptFilter(Filter) - Method in class ome.model.enums.FilterType
 
acceptFilter(Filter) - Method in class ome.model.enums.Format
 
acceptFilter(Filter) - Method in class ome.model.enums.Illumination
 
acceptFilter(Filter) - Method in class ome.model.enums.Immersion
 
acceptFilter(Filter) - Method in class ome.model.enums.LaserMedium
 
acceptFilter(Filter) - Method in class ome.model.enums.LaserType
 
acceptFilter(Filter) - Method in class ome.model.enums.Medium
 
acceptFilter(Filter) - Method in class ome.model.enums.MicrobeamManipulationType
 
acceptFilter(Filter) - Method in class ome.model.enums.MicroscopeType
 
acceptFilter(Filter) - Method in class ome.model.enums.PhotometricInterpretation
 
acceptFilter(Filter) - Method in class ome.model.enums.PixelsType
 
acceptFilter(Filter) - Method in class ome.model.enums.ProjectionAxis
 
acceptFilter(Filter) - Method in class ome.model.enums.ProjectionType
 
acceptFilter(Filter) - Method in class ome.model.enums.Pulse
 
acceptFilter(Filter) - Method in class ome.model.enums.RenderingModel
 
acceptFilter(Filter) - Method in class ome.model.experiment.Experiment
 
acceptFilter(Filter) - Method in class ome.model.experiment.MicrobeamManipulation
 
acceptFilter(Filter) - Method in class ome.model.fs.Fileset
 
acceptFilter(Filter) - Method in class ome.model.fs.FilesetEntry
 
acceptFilter(Filter) - Method in class ome.model.fs.FilesetJobLink
 
acceptFilter(Filter) - Method in class ome.model.internal.Details
 
acceptFilter(Filter) - Method in class ome.model.internal.Link
 
acceptFilter(Filter) - Method in class ome.model.jobs.ImportJob
Deprecated.
 
acceptFilter(Filter) - Method in class ome.model.jobs.IndexingJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.IntegrityCheckJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.Job
 
acceptFilter(Filter) - Method in class ome.model.jobs.JobOriginalFileLink
 
acceptFilter(Filter) - Method in class ome.model.jobs.JobStatus
 
acceptFilter(Filter) - Method in class ome.model.jobs.MetadataImportJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.ParseJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.PixelDataJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.ScriptJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.ThumbnailGenerationJob
 
acceptFilter(Filter) - Method in class ome.model.jobs.UploadJob
 
acceptFilter(Filter) - Method in class ome.model.meta.DBPatch
 
acceptFilter(Filter) - Method in class ome.model.meta.Event
 
acceptFilter(Filter) - Method in class ome.model.meta.EventLog
 
acceptFilter(Filter) - Method in class ome.model.meta.Experimenter
 
acceptFilter(Filter) - Method in class ome.model.meta.ExperimenterGroup
 
acceptFilter(Filter) - Method in class ome.model.meta.ExternalInfo
 
acceptFilter(Filter) - Method in class ome.model.meta.GroupExperimenterMap
 
acceptFilter(Filter) - Method in class ome.model.meta.Namespace
 
acceptFilter(Filter) - Method in class ome.model.meta.Node
 
acceptFilter(Filter) - Method in class ome.model.meta.Session
 
acceptFilter(Filter) - Method in class ome.model.meta.Share
 
acceptFilter(Filter) - Method in class ome.model.meta.ShareMember
 
acceptFilter(Filter) - Method in class ome.model.roi.AffineTransform
 
acceptFilter(Filter) - Method in class ome.model.roi.Ellipse
 
acceptFilter(Filter) - Method in class ome.model.roi.Label
 
acceptFilter(Filter) - Method in class ome.model.roi.Line
 
acceptFilter(Filter) - Method in class ome.model.roi.Mask
 
acceptFilter(Filter) - Method in class ome.model.roi.Path
Deprecated.
 
acceptFilter(Filter) - Method in class ome.model.roi.Point
 
acceptFilter(Filter) - Method in class ome.model.roi.Polygon
 
acceptFilter(Filter) - Method in class ome.model.roi.Polyline
 
acceptFilter(Filter) - Method in class ome.model.roi.Rectangle
 
acceptFilter(Filter) - Method in class ome.model.roi.Roi
 
acceptFilter(Filter) - Method in class ome.model.roi.Shape
 
acceptFilter(Filter) - Method in class ome.model.screen.Plate
 
acceptFilter(Filter) - Method in class ome.model.screen.PlateAcquisition
 
acceptFilter(Filter) - Method in class ome.model.screen.Reagent
 
acceptFilter(Filter) - Method in class ome.model.screen.Screen
 
acceptFilter(Filter) - Method in class ome.model.screen.ScreenPlateLink
 
acceptFilter(Filter) - Method in class ome.model.screen.Well
 
acceptFilter(Filter) - Method in class ome.model.screen.WellReagentLink
 
acceptFilter(Filter) - Method in class ome.model.screen.WellSample
 
acceptFilter(Filter) - Method in class ome.model.stats.StatsInfo
 
acceptFilter(Filter) - Method in class ome.model.units.ElectricPotential
 
acceptFilter(Filter) - Method in class ome.model.units.Frequency
 
acceptFilter(Filter) - Method in class ome.model.units.Length
 
acceptFilter(Filter) - Method in class ome.model.units.Power
 
acceptFilter(Filter) - Method in class ome.model.units.Pressure
 
acceptFilter(Filter) - Method in class ome.model.units.Temperature
 
acceptFilter(Filter) - Method in class ome.model.units.Time
 
acceptFilter(Filter) - Method in interface ome.util.Filterable
 
acceptFilter(Filter) - Method in class ome.util.PermDetails
 
ACLCreateViolation - Exception in ome.conditions.acl
User does not have permissions to perform given action.
ACLCreateViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLCreateViolation
 
ACLDeleteViolation - Exception in ome.conditions.acl
User does not have permissions to perform given action.
ACLDeleteViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLDeleteViolation
 
ACLLoadViolation - Exception in ome.conditions.acl
User does not have permissions to perform given action.
ACLLoadViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLLoadViolation
 
ACLUpdateViolation - Exception in ome.conditions.acl
User does not have permissions to perform given action.
ACLUpdateViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLUpdateViolation
 
ACLViolation - Exception in ome.conditions.acl
User has attempted an action which is not permitted by the Permissions of a given instance.
ACLViolation(Class, Long, String) - Constructor for exception ome.conditions.acl.ACLViolation
 
acquisitionData - Variable in class ome.parameters.Options
 
acquisitionDate - Variable in class ome.model.core.Image
 
ACQUISITIONDATE - Static variable in class ome.model.core.Image
 
AcquisitionMode - Class in ome.model.enums
 
AcquisitionMode() - Constructor for class ome.model.enums.AcquisitionMode
 
AcquisitionMode(Long) - Constructor for class ome.model.enums.AcquisitionMode
 
AcquisitionMode(Long, boolean) - Constructor for class ome.model.enums.AcquisitionMode
Main constructor.
AcquisitionMode(String) - Constructor for class ome.model.enums.AcquisitionMode
 
AcquisitionMode.Details - Class in ome.model.enums
 
action - Variable in class ome.model.meta.EventLog
 
ACTION - Static variable in class ome.model.meta.EventLog
 
active - Variable in class ome.model.display.ChannelBinding
 
ACTIVE - Static variable in class ome.model.display.ChannelBinding
 
active - Variable in class ome.model.display.ProjectionDef
 
ACTIVE - Static variable in class ome.model.display.ProjectionDef
 
active - Variable in class ome.model.meta.Share
 
ACTIVE - Static variable in class ome.model.meta.Share
 
activeSession(String) - Method in class ome.util.actions.PostgresSqlAction
 
activeSession(String) - Method in interface ome.util.SqlAction
Returns whether the given string is the UUID of a session that is currently active.
Add(Conversion...) - Static method in class ome.model.units.Conversion
Static helper for creating Conversion.Add instances.
Add(Conversion[]) - Constructor for class ome.model.units.Conversion.Add
 
add(QueryParameter) - Method in class ome.parameters.Parameters
 
add(String) - Method in class ome.parameters.Period
 
addAlgorithm(String) - Method in class ome.parameters.Parameters
 
addAll(Parameters) - Method in class ome.parameters.Parameters
adds all the information from the passed in Parameters instance to this instance.
addAll(QueryParameter[]) - Method in class ome.parameters.Parameters
adds all the information from the passed in Parameters instance to this instance.
addAnnotationAnnotationLink(AnnotationAnnotationLink) - Method in class ome.model.annotations.Annotation
use instead of setAnnotationLinks .
addAnnotationAnnotationLink(AnnotationAnnotationLink, boolean) - Method in class ome.model.annotations.Annotation
Adds a ome.model.annotations.AnnotationAnnotationLink to annotationLinks, allowing for recursion -- whether or not addAnnotationAnnotationLink will be called on the addition if it is loaded
addAnnotationAnnotationLinkSet(Collection<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation
use like addAnnotationAnnotationLink.
addBoolean(String, Boolean) - Method in class ome.parameters.Parameters
 
addChannel(Channel) - Method in class ome.model.core.LogicalChannel
use instead of setChannels .
addChannel(Channel) - Method in class ome.model.core.Pixels
use instead of setChannels .
addChannelAnnotationLink(ChannelAnnotationLink) - Method in class ome.model.core.Channel
use instead of setAnnotationLinks .
addChannelAnnotationLink(ChannelAnnotationLink, boolean) - Method in class ome.model.core.Channel
Adds a ome.model.annotations.ChannelAnnotationLink to annotationLinks, allowing for recursion -- whether or not addChannelAnnotationLink will be called on the addition if it is loaded
addChannelAnnotationLinkSet(Collection<ChannelAnnotationLink>) - Method in class ome.model.core.Channel
use like addChannelAnnotationLink.
addChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef
use instead of setWaveRendering .
addChannelBindingSet(Collection<ChannelBinding>) - Method in class ome.model.display.RenderingDef
use like addChannelBinding.
addChannelSet(Collection<Channel>) - Method in class ome.model.core.LogicalChannel
use like addChannel.
addChannelSet(Collection<Channel>) - Method in class ome.model.core.Pixels
use like addChannel.
addChildFolders(Folder) - Method in class ome.model.containers.Folder
use instead of setChildFolders .
addChildFoldersSet(Collection<Folder>) - Method in class ome.model.containers.Folder
use like addFolder.
addClass(Class) - Method in class ome.parameters.Parameters
 
addClass(String, Class) - Method in class ome.parameters.Parameters
 
addCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding
use instead of setSpatialDomainEnhancement .
addCodomainMapContextSet(Collection<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding
use like addCodomainMapContext.
addDatasetAnnotationLink(DatasetAnnotationLink) - Method in class ome.model.containers.Dataset
use instead of setAnnotationLinks .
addDatasetAnnotationLink(DatasetAnnotationLink, boolean) - Method in class ome.model.containers.Dataset
Adds a ome.model.annotations.DatasetAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDatasetAnnotationLink will be called on the addition if it is loaded
addDatasetAnnotationLinkSet(Collection<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset
use like addDatasetAnnotationLink.
addDatasetImageLink(DatasetImageLink) - Method in class ome.model.containers.Dataset
use instead of setImageLinks .
addDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.containers.Dataset
Adds a ome.model.containers.DatasetImageLink to imageLinks, allowing for recursion -- whether or not addDatasetImageLink will be called on the addition if it is loaded
addDatasetImageLink(DatasetImageLink) - Method in class ome.model.core.Image
use instead of setDatasetLinks .
addDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.core.Image
Adds a ome.model.containers.DatasetImageLink to datasetLinks, allowing for recursion -- whether or not addDatasetImageLink will be called on the addition if it is loaded
addDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.containers.Dataset
use like addDatasetImageLink.
addDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.core.Image
use like addDatasetImageLink.
addDetector(Detector) - Method in class ome.model.acquisition.Instrument
use instead of setDetector .
addDetectorAnnotationLink(DetectorAnnotationLink) - Method in class ome.model.acquisition.Detector
use instead of setAnnotationLinks .
addDetectorAnnotationLink(DetectorAnnotationLink, boolean) - Method in class ome.model.acquisition.Detector
Adds a ome.model.annotations.DetectorAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDetectorAnnotationLink will be called on the addition if it is loaded
addDetectorAnnotationLinkSet(Collection<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector
use like addDetectorAnnotationLink.
addDetectorSet(Collection<Detector>) - Method in class ome.model.acquisition.Instrument
use like addDetector.
addDichroic(Dichroic) - Method in class ome.model.acquisition.Instrument
use instead of setDichroic .
addDichroicAnnotationLink(DichroicAnnotationLink) - Method in class ome.model.acquisition.Dichroic
use instead of setAnnotationLinks .
addDichroicAnnotationLink(DichroicAnnotationLink, boolean) - Method in class ome.model.acquisition.Dichroic
Adds a ome.model.annotations.DichroicAnnotationLink to annotationLinks, allowing for recursion -- whether or not addDichroicAnnotationLink will be called on the addition if it is loaded
addDichroicAnnotationLinkSet(Collection<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic
use like addDichroicAnnotationLink.
addDichroicSet(Collection<Dichroic>) - Method in class ome.model.acquisition.Instrument
use like addDichroic.
addEvent(Event) - Method in class ome.model.meta.Session
use instead of setEvents .
addEventLog(EventLog) - Method in class ome.model.meta.Event
use instead of setLogs .
addEventLogSet(Collection<EventLog>) - Method in class ome.model.meta.Event
use like addEventLog.
addEventSet(Collection<Event>) - Method in class ome.model.meta.Session
use like addEvent.
addExperimenterAnnotationLink(ExperimenterAnnotationLink) - Method in class ome.model.meta.Experimenter
use instead of setAnnotationLinks .
addExperimenterAnnotationLink(ExperimenterAnnotationLink, boolean) - Method in class ome.model.meta.Experimenter
Adds a ome.model.annotations.ExperimenterAnnotationLink to annotationLinks, allowing for recursion -- whether or not addExperimenterAnnotationLink will be called on the addition if it is loaded
addExperimenterAnnotationLinkSet(Collection<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter
use like addExperimenterAnnotationLink.
addExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink) - Method in class ome.model.meta.ExperimenterGroup
use instead of setAnnotationLinks .
addExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink, boolean) - Method in class ome.model.meta.ExperimenterGroup
Adds a ome.model.annotations.ExperimenterGroupAnnotationLink to annotationLinks, allowing for recursion -- whether or not addExperimenterGroupAnnotationLink will be called on the addition if it is loaded
addExperimenterGroupAnnotationLinkSet(Collection<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup
use like addExperimenterGroupAnnotationLink.
addExtendedRestrictions(Set<String>) - Method in class ome.model.internal.Permissions
 
addFilesetAnnotationLink(FilesetAnnotationLink) - Method in class ome.model.fs.Fileset
use instead of setAnnotationLinks .
addFilesetAnnotationLink(FilesetAnnotationLink, boolean) - Method in class ome.model.fs.Fileset
Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFilesetAnnotationLink will be called on the addition if it is loaded
addFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset
use like addFilesetAnnotationLink.
addFilesetEntry(FilesetEntry) - Method in class ome.model.core.OriginalFile
use instead of setFilesetEntries .
addFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset
use instead of setUsedFiles .
addFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.core.OriginalFile
use like addFilesetEntry.
addFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.fs.Fileset
use like addFilesetEntry.
addFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset
use instead of setJobLinks .
addFilesetJobLink(FilesetJobLink, boolean) - Method in class ome.model.fs.Fileset
Adds a ome.model.fs.FilesetJobLink to jobLinks, allowing for recursion -- whether or not addFilesetJobLink will be called on the addition if it is loaded
addFilesetJobLinkSet(Collection<FilesetJobLink>) - Method in class ome.model.fs.Fileset
use like addFilesetJobLink.
addFilter(Filter) - Method in class ome.model.acquisition.Instrument
use instead of setFilter .
addFilterAnnotationLink(FilterAnnotationLink) - Method in class ome.model.acquisition.Filter
use instead of setAnnotationLinks .
addFilterAnnotationLink(FilterAnnotationLink, boolean) - Method in class ome.model.acquisition.Filter
Adds a ome.model.annotations.FilterAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFilterAnnotationLink will be called on the addition if it is loaded
addFilterAnnotationLinkSet(Collection<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter
use like addFilterAnnotationLink.
addFiltered(String) - Method in class ome.model.internal.Details
consider the collection named by collectionName to be a "filtered" representation of the DB.
addFiltered(Collection<String>) - Method in class ome.model.internal.Details
consider all the collections named by the elements of collection to be a "filtered" representation of the DB.
addFilterSet(Collection<Filter>) - Method in class ome.model.acquisition.Instrument
use like addFilter.
addFilterSet(FilterSet) - Method in class ome.model.acquisition.Instrument
use instead of setFilterSet .
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.Filter
use instead of setEmissionFilterLink .
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.Filter
Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addFilterSetEmissionFilterLink will be called on the addition if it is loaded
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.FilterSet
use instead of setEmissionFilterLink .
addFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet
Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addFilterSetEmissionFilterLink will be called on the addition if it is loaded
addFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter
use like addFilterSetEmissionFilterLink.
addFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet
use like addFilterSetEmissionFilterLink.
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.Filter
use instead of setExcitationFilterLink .
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.Filter
Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addFilterSetExcitationFilterLink will be called on the addition if it is loaded
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.FilterSet
use instead of setExcitationFilterLink .
addFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet
Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addFilterSetExcitationFilterLink will be called on the addition if it is loaded
addFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter
use like addFilterSetExcitationFilterLink.
addFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet
use like addFilterSetExcitationFilterLink.
addFilterSetSet(Collection<FilterSet>) - Method in class ome.model.acquisition.Instrument
use like addFilterSet.
addFolderAnnotationLink(FolderAnnotationLink) - Method in class ome.model.containers.Folder
use instead of setAnnotationLinks .
addFolderAnnotationLink(FolderAnnotationLink, boolean) - Method in class ome.model.containers.Folder
Adds a ome.model.annotations.FolderAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFolderAnnotationLink will be called on the addition if it is loaded
addFolderAnnotationLinkSet(Collection<FolderAnnotationLink>) - Method in class ome.model.containers.Folder
use like addFolderAnnotationLink.
addFolderImageLink(FolderImageLink) - Method in class ome.model.containers.Folder
use instead of setImageLinks .
addFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.containers.Folder
Adds a ome.model.containers.FolderImageLink to imageLinks, allowing for recursion -- whether or not addFolderImageLink will be called on the addition if it is loaded
addFolderImageLink(FolderImageLink) - Method in class ome.model.core.Image
use instead of setFolderLinks .
addFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.core.Image
Adds a ome.model.containers.FolderImageLink to folderLinks, allowing for recursion -- whether or not addFolderImageLink will be called on the addition if it is loaded
addFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.containers.Folder
use like addFolderImageLink.
addFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.core.Image
use like addFolderImageLink.
addFolderRoiLink(FolderRoiLink) - Method in class ome.model.containers.Folder
use instead of setRoiLinks .
addFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.containers.Folder
Adds a ome.model.containers.FolderRoiLink to roiLinks, allowing for recursion -- whether or not addFolderRoiLink will be called on the addition if it is loaded
addFolderRoiLink(FolderRoiLink) - Method in class ome.model.roi.Roi
use instead of setFolderLinks .
addFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.roi.Roi
Adds a ome.model.containers.FolderRoiLink to folderLinks, allowing for recursion -- whether or not addFolderRoiLink will be called on the addition if it is loaded
addFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.containers.Folder
use like addFolderRoiLink.
addFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.roi.Roi
use like addFolderRoiLink.
addGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter
use instead of setGroupExperimenterMap .
addGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.Experimenter
Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap, allowing for recursion -- whether or not addGroupExperimenterMap will be called on the addition if it is loaded
addGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.ExperimenterGroup
use instead of setGroupExperimenterMap .
addGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.ExperimenterGroup
Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap, allowing for recursion -- whether or not addGroupExperimenterMap will be called on the addition if it is loaded
addGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter
use like addGroupExperimenterMap.
addGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup
use like addGroupExperimenterMap.
addId(Long) - Method in class ome.parameters.Parameters
 
addIds(Collection) - Method in class ome.parameters.Parameters
 
addImage(Image) - Method in class ome.model.fs.Fileset
use instead of setImages .
addImageAnnotationLink(ImageAnnotationLink) - Method in class ome.model.core.Image
use instead of setAnnotationLinks .
addImageAnnotationLink(ImageAnnotationLink, boolean) - Method in class ome.model.core.Image
Adds a ome.model.annotations.ImageAnnotationLink to annotationLinks, allowing for recursion -- whether or not addImageAnnotationLink will be called on the addition if it is loaded
addImageAnnotationLinkSet(Collection<ImageAnnotationLink>) - Method in class ome.model.core.Image
use like addImageAnnotationLink.
addImageSet(Collection<Image>) - Method in class ome.model.fs.Fileset
use like addImage.
addInstrumentAnnotationLink(InstrumentAnnotationLink) - Method in class ome.model.acquisition.Instrument
use instead of setAnnotationLinks .
addInstrumentAnnotationLink(InstrumentAnnotationLink, boolean) - Method in class ome.model.acquisition.Instrument
Adds a ome.model.annotations.InstrumentAnnotationLink to annotationLinks, allowing for recursion -- whether or not addInstrumentAnnotationLink will be called on the addition if it is loaded
addInstrumentAnnotationLinkSet(Collection<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument
use like addInstrumentAnnotationLink.
addInteger(String, Integer) - Method in class ome.parameters.Parameters
 
addJobOriginalFileLink(JobOriginalFileLink) - Method in class ome.model.jobs.Job
use instead of setOriginalFileLinks .
addJobOriginalFileLink(JobOriginalFileLink, boolean) - Method in class ome.model.jobs.Job
Adds a ome.model.jobs.JobOriginalFileLink to originalFileLinks, allowing for recursion -- whether or not addJobOriginalFileLink will be called on the addition if it is loaded
addJobOriginalFileLinkSet(Collection<JobOriginalFileLink>) - Method in class ome.model.jobs.Job
use like addJobOriginalFileLink.
addLightPathAnnotationLink(LightPathAnnotationLink) - Method in class ome.model.acquisition.LightPath
use instead of setAnnotationLinks .
addLightPathAnnotationLink(LightPathAnnotationLink, boolean) - Method in class ome.model.acquisition.LightPath
Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks, allowing for recursion -- whether or not addLightPathAnnotationLink will be called on the addition if it is loaded
addLightPathAnnotationLinkSet(Collection<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath
use like addLightPathAnnotationLink.
addLightPathEmissionFilterLink(LightPathEmissionFilterLink) - Method in class ome.model.acquisition.LightPath
use instead of setEmissionFilterLink .
addLightPathEmissionFilterLink(LightPathEmissionFilterLink, boolean) - Method in class ome.model.acquisition.LightPath
Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink, allowing for recursion -- whether or not addLightPathEmissionFilterLink will be called on the addition if it is loaded
addLightPathEmissionFilterLinkSet(Collection<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath
use like addLightPathEmissionFilterLink.
addLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath
use instead of setExcitationFilterLink .
addLightPathExcitationFilterLink(LightPathExcitationFilterLink, boolean) - Method in class ome.model.acquisition.LightPath
Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink, allowing for recursion -- whether or not addLightPathExcitationFilterLink will be called on the addition if it is loaded
addLightPathExcitationFilterLinkSet(Collection<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath
use like addLightPathExcitationFilterLink.
addLightSettings(LightSettings) - Method in class ome.model.experiment.MicrobeamManipulation
use instead of setLightSourceSettings .
addLightSettingsSet(Collection<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation
use like addLightSettings.
addLightSource(LightSource) - Method in class ome.model.acquisition.Instrument
use instead of setLightSource .
addLightSourceAnnotationLink(LightSourceAnnotationLink) - Method in class ome.model.acquisition.LightSource
use instead of setAnnotationLinks .
addLightSourceAnnotationLink(LightSourceAnnotationLink, boolean) - Method in class ome.model.acquisition.LightSource
Adds a ome.model.annotations.LightSourceAnnotationLink to annotationLinks, allowing for recursion -- whether or not addLightSourceAnnotationLink will be called on the addition if it is loaded
addLightSourceAnnotationLinkSet(Collection<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource
use like addLightSourceAnnotationLink.
addLightSourceSet(Collection<LightSource>) - Method in class ome.model.acquisition.Instrument
use like addLightSource.
addList(String, List) - Method in class ome.parameters.Parameters
 
addLong(String, Long) - Method in class ome.parameters.Parameters
 
addMap(String, Map) - Method in class ome.parameters.Parameters
 
addMessageWithinDbPatchEnd(String, int, String) - Method in interface ome.util.SqlAction
Add a unique message to the DB patch table within the current patch.
addMessageWithinDbPatchEnd(String, int, String) - Method in class ome.util.SqlAction.Impl
 
addMessageWithinDbPatchStart(String, int, String) - Method in interface ome.util.SqlAction
Add a unique message to the DB patch table within the current patch.
addMessageWithinDbPatchStart(String, int, String) - Method in class ome.util.SqlAction.Impl
 
addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.experiment.Experiment
use instead of setMicrobeamManipulation .
addMicrobeamManipulationSet(Collection<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment
use like addMicrobeamManipulation.
addMimetypes(Collection<String>, MapSqlParameterSource) - Method in class ome.util.SqlAction.Impl
Returns the "and_mimetype" clause which must be appended to a given query.
addNamespaceAnnotationLink(NamespaceAnnotationLink) - Method in class ome.model.meta.Namespace
use instead of setAnnotationLinks .
addNamespaceAnnotationLink(NamespaceAnnotationLink, boolean) - Method in class ome.model.meta.Namespace
Adds a ome.model.annotations.NamespaceAnnotationLink to annotationLinks, allowing for recursion -- whether or not addNamespaceAnnotationLink will be called on the addition if it is loaded
addNamespaceAnnotationLinkSet(Collection<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace
use like addNamespaceAnnotationLink.
addNodeAnnotationLink(NodeAnnotationLink) - Method in class ome.model.meta.Node
use instead of setAnnotationLinks .
addNodeAnnotationLink(NodeAnnotationLink, boolean) - Method in class ome.model.meta.Node
Adds a ome.model.annotations.NodeAnnotationLink to annotationLinks, allowing for recursion -- whether or not addNodeAnnotationLink will be called on the addition if it is loaded
addNodeAnnotationLinkSet(Collection<NodeAnnotationLink>) - Method in class ome.model.meta.Node
use like addNodeAnnotationLink.
addObjective(Objective) - Method in class ome.model.acquisition.Instrument
use instead of setObjective .
addObjectiveAnnotationLink(ObjectiveAnnotationLink) - Method in class ome.model.acquisition.Objective
use instead of setAnnotationLinks .
addObjectiveAnnotationLink(ObjectiveAnnotationLink, boolean) - Method in class ome.model.acquisition.Objective
Adds a ome.model.annotations.ObjectiveAnnotationLink to annotationLinks, allowing for recursion -- whether or not addObjectiveAnnotationLink will be called on the addition if it is loaded
addObjectiveAnnotationLinkSet(Collection<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective
use like addObjectiveAnnotationLink.
addObjectiveSet(Collection<Objective>) - Method in class ome.model.acquisition.Instrument
use like addObjective.
addOriginalFileAnnotationLink(OriginalFileAnnotationLink) - Method in class ome.model.core.OriginalFile
use instead of setAnnotationLinks .
addOriginalFileAnnotationLink(OriginalFileAnnotationLink, boolean) - Method in class ome.model.core.OriginalFile
Adds a ome.model.annotations.OriginalFileAnnotationLink to annotationLinks, allowing for recursion -- whether or not addOriginalFileAnnotationLink will be called on the addition if it is loaded
addOriginalFileAnnotationLinkSet(Collection<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile
use like addOriginalFileAnnotationLink.
addOTF(OTF) - Method in class ome.model.acquisition.Instrument
use instead of setOtf .
addOTFSet(Collection<OTF>) - Method in class ome.model.acquisition.Instrument
use like addOTF.
addPixels(Pixels) - Method in class ome.model.core.Image
use instead of setPixels .
addPixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.OriginalFile
use instead of setPixelsFileMaps .
addPixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.OriginalFile
Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps, allowing for recursion -- whether or not addPixelsOriginalFileMap will be called on the addition if it is loaded
addPixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.Pixels
use instead of setPixelsFileMaps .
addPixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.Pixels
Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps, allowing for recursion -- whether or not addPixelsOriginalFileMap will be called on the addition if it is loaded
addPixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile
use like addPixelsOriginalFileMap.
addPixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels
use like addPixelsOriginalFileMap.
addPixelsSet(Collection<Pixels>) - Method in class ome.model.core.Image
use like addPixels.
addPlaneInfo(PlaneInfo) - Method in class ome.model.core.Pixels
use instead of setPlaneInfo .
addPlaneInfoAnnotationLink(PlaneInfoAnnotationLink) - Method in class ome.model.core.PlaneInfo
use instead of setAnnotationLinks .
addPlaneInfoAnnotationLink(PlaneInfoAnnotationLink, boolean) - Method in class ome.model.core.PlaneInfo
Adds a ome.model.annotations.PlaneInfoAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlaneInfoAnnotationLink will be called on the addition if it is loaded
addPlaneInfoAnnotationLinkSet(Collection<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo
use like addPlaneInfoAnnotationLink.
addPlaneInfoSet(Collection<PlaneInfo>) - Method in class ome.model.core.Pixels
use like addPlaneInfo.
addPlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.Plate
use instead of setPlateAcquisitions .
addPlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink) - Method in class ome.model.screen.PlateAcquisition
use instead of setAnnotationLinks .
addPlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink, boolean) - Method in class ome.model.screen.PlateAcquisition
Adds a ome.model.annotations.PlateAcquisitionAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAcquisitionAnnotationLink will be called on the addition if it is loaded
addPlateAcquisitionAnnotationLinkSet(Collection<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition
use like addPlateAcquisitionAnnotationLink.
addPlateAcquisitionSet(Collection<PlateAcquisition>) - Method in class ome.model.screen.Plate
use like addPlateAcquisition.
addPlateAnnotationLink(PlateAnnotationLink) - Method in class ome.model.screen.Plate
use instead of setAnnotationLinks .
addPlateAnnotationLink(PlateAnnotationLink, boolean) - Method in class ome.model.screen.Plate
Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAnnotationLink will be called on the addition if it is loaded
addPlateAnnotationLinkSet(Collection<PlateAnnotationLink>) - Method in class ome.model.screen.Plate
use like addPlateAnnotationLink.
addProjectAnnotationLink(ProjectAnnotationLink) - Method in class ome.model.containers.Project
use instead of setAnnotationLinks .
addProjectAnnotationLink(ProjectAnnotationLink, boolean) - Method in class ome.model.containers.Project
Adds a ome.model.annotations.ProjectAnnotationLink to annotationLinks, allowing for recursion -- whether or not addProjectAnnotationLink will be called on the addition if it is loaded
addProjectAnnotationLinkSet(Collection<ProjectAnnotationLink>) - Method in class ome.model.containers.Project
use like addProjectAnnotationLink.
addProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Dataset
use instead of setProjectLinks .
addProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Dataset
Adds a ome.model.containers.ProjectDatasetLink to projectLinks, allowing for recursion -- whether or not addProjectDatasetLink will be called on the addition if it is loaded
addProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Project
use instead of setDatasetLinks .
addProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Project
Adds a ome.model.containers.ProjectDatasetLink to datasetLinks, allowing for recursion -- whether or not addProjectDatasetLink will be called on the addition if it is loaded
addProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset
use like addProjectDatasetLink.
addProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Project
use like addProjectDatasetLink.
addProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef
use instead of setProjections .
addProjectionDefSet(Collection<ProjectionDef>) - Method in class ome.model.display.RenderingDef
use like addProjectionDef.
addReagent(Reagent) - Method in class ome.model.screen.Screen
use instead of setReagents .
addReagentAnnotationLink(ReagentAnnotationLink) - Method in class ome.model.screen.Reagent
use instead of setAnnotationLinks .
addReagentAnnotationLink(ReagentAnnotationLink, boolean) - Method in class ome.model.screen.Reagent
Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks, allowing for recursion -- whether or not addReagentAnnotationLink will be called on the addition if it is loaded
addReagentAnnotationLinkSet(Collection<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent
use like addReagentAnnotationLink.
addReagentSet(Collection<Reagent>) - Method in class ome.model.screen.Screen
use like addReagent.
addRenderingDef(RenderingDef) - Method in class ome.model.core.Pixels
use instead of setSettings .
addRenderingDefSet(Collection<RenderingDef>) - Method in class ome.model.core.Pixels
use like addRenderingDef.
addRoi(Roi) - Method in class ome.model.core.Image
use instead of setRois .
addRoiAnnotationLink(RoiAnnotationLink) - Method in class ome.model.roi.Roi
use instead of setAnnotationLinks .
addRoiAnnotationLink(RoiAnnotationLink, boolean) - Method in class ome.model.roi.Roi
Adds a ome.model.annotations.RoiAnnotationLink to annotationLinks, allowing for recursion -- whether or not addRoiAnnotationLink will be called on the addition if it is loaded
addRoiAnnotationLinkSet(Collection<RoiAnnotationLink>) - Method in class ome.model.roi.Roi
use like addRoiAnnotationLink.
addRoiSet(Collection<Roi>) - Method in class ome.model.core.Image
use like addRoi.
addScreenAnnotationLink(ScreenAnnotationLink) - Method in class ome.model.screen.Screen
use instead of setAnnotationLinks .
addScreenAnnotationLink(ScreenAnnotationLink, boolean) - Method in class ome.model.screen.Screen
Adds a ome.model.annotations.ScreenAnnotationLink to annotationLinks, allowing for recursion -- whether or not addScreenAnnotationLink will be called on the addition if it is loaded
addScreenAnnotationLinkSet(Collection<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen
use like addScreenAnnotationLink.
addScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Plate
use instead of setScreenLinks .
addScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Plate
Adds a ome.model.screen.ScreenPlateLink to screenLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded
addScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Screen
use instead of setPlateLinks .
addScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Screen
Adds a ome.model.screen.ScreenPlateLink to plateLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded
addScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Plate
use like addScreenPlateLink.
addScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Screen
use like addScreenPlateLink.
addSeen(Object) - Method in class ome.util.ContextFilter
 
addSession(Session) - Method in class ome.model.meta.Node
use instead of setSessions .
addSessionAnnotationLink(SessionAnnotationLink) - Method in class ome.model.meta.Session
use instead of setAnnotationLinks .
addSessionAnnotationLink(SessionAnnotationLink, boolean) - Method in class ome.model.meta.Session
Adds a ome.model.annotations.SessionAnnotationLink to annotationLinks, allowing for recursion -- whether or not addSessionAnnotationLink will be called on the addition if it is loaded
addSessionAnnotationLinkSet(Collection<SessionAnnotationLink>) - Method in class ome.model.meta.Session
use like addSessionAnnotationLink.
addSessionSet(Collection<Session>) - Method in class ome.model.meta.Node
use like addSession.
addSet(String, Set) - Method in class ome.parameters.Parameters
 
addShape(Shape) - Method in class ome.model.roi.Roi
use instead of setShapes .
addShapeAnnotationLink(ShapeAnnotationLink) - Method in class ome.model.roi.Shape
use instead of setAnnotationLinks .
addShapeAnnotationLink(ShapeAnnotationLink, boolean) - Method in class ome.model.roi.Shape
Adds a ome.model.annotations.ShapeAnnotationLink to annotationLinks, allowing for recursion -- whether or not addShapeAnnotationLink will be called on the addition if it is loaded
addShapeAnnotationLinkSet(Collection<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape
use like addShapeAnnotationLink.
addShapeSet(Collection<Shape>) - Method in class ome.model.roi.Roi
use like addShape.
addString(String, String) - Method in class ome.parameters.Parameters
 
addThumbnail(Thumbnail) - Method in class ome.model.core.Pixels
use instead of setThumbnails .
addThumbnailSet(Collection<Thumbnail>) - Method in class ome.model.core.Pixels
use like addThumbnail.
addViolation(ACLViolation) - Method in exception ome.conditions.acl.CollectedACLViolations
 
addWell(Well) - Method in class ome.model.screen.Plate
use instead of setWells .
addWellAnnotationLink(WellAnnotationLink) - Method in class ome.model.screen.Well
use instead of setAnnotationLinks .
addWellAnnotationLink(WellAnnotationLink, boolean) - Method in class ome.model.screen.Well
Adds a ome.model.annotations.WellAnnotationLink to annotationLinks, allowing for recursion -- whether or not addWellAnnotationLink will be called on the addition if it is loaded
addWellAnnotationLinkSet(Collection<WellAnnotationLink>) - Method in class ome.model.screen.Well
use like addWellAnnotationLink.
addWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Reagent
use instead of setWellLinks .
addWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Reagent
Adds a ome.model.screen.WellReagentLink to wellLinks, allowing for recursion -- whether or not addWellReagentLink will be called on the addition if it is loaded
addWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Well
use instead of setReagentLinks .
addWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Well
Adds a ome.model.screen.WellReagentLink to reagentLinks, allowing for recursion -- whether or not addWellReagentLink will be called on the addition if it is loaded
addWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Reagent
use like addWellReagentLink.
addWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Well
use like addWellReagentLink.
addWellSample(WellSample) - Method in class ome.model.core.Image
use instead of setWellSamples .
addWellSample(WellSample) - Method in class ome.model.screen.PlateAcquisition
use instead of setWellSample .
addWellSample(WellSample) - Method in class ome.model.screen.Well
use instead of setWellSamples .
addWellSampleSet(Collection<WellSample>) - Method in class ome.model.core.Image
use like addWellSample.
addWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.PlateAcquisition
use like addWellSample.
addWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.Well
use like addWellSample.
addWellSet(Collection<Well>) - Method in class ome.model.screen.Plate
use like addWell.
AdminPrivilege - Class in ome.model.enums
 
AdminPrivilege() - Constructor for class ome.model.enums.AdminPrivilege
 
AdminPrivilege(Long) - Constructor for class ome.model.enums.AdminPrivilege
 
AdminPrivilege(Long, boolean) - Constructor for class ome.model.enums.AdminPrivilege
Main constructor.
AdminPrivilege(String) - Constructor for class ome.model.enums.AdminPrivilege
 
AdminPrivilege.Details - Class in ome.model.enums
 
AffineTransform - Class in ome.model.roi
These filter definitions are used by the security system to eliminate non-readable objects from queries.
AffineTransform() - Constructor for class ome.model.roi.AffineTransform
 
AffineTransform(Long) - Constructor for class ome.model.roi.AffineTransform
 
AffineTransform(Long, boolean) - Constructor for class ome.model.roi.AffineTransform
Main constructor.
AffineTransform(Double, Double, Double, Double, Double, Double) - Constructor for class ome.model.roi.AffineTransform
 
AffineTransform.Details - Class in ome.model.roi
 
afterFilter(String, Object) - Method in class ome.util.ContextFilter
 
afterPropertiesSet() - Method in class ome.util.MapPut
 
airPressure - Variable in class ome.model.acquisition.ImagingEnvironment
 
AIRPRESSURE - Static variable in class ome.model.acquisition.ImagingEnvironment
 
ALGORITHM - Static variable in class ome.parameters.Parameters
named parameter "algorithm".
allExps() - Method in class ome.parameters.Parameters
 
alpha - Variable in class ome.model.core.Channel
 
ALPHA - Static variable in class ome.model.core.Channel
 
alpha - Variable in class ome.model.display.ChannelBinding
 
ALPHA - Static variable in class ome.model.display.ChannelBinding
 
alpha - Variable in class ome.model.screen.Well
 
ALPHA - Static variable in class ome.model.screen.Well
 
amplificationGain - Variable in class ome.model.acquisition.Detector
 
AMPLIFICATIONGAIN - Static variable in class ome.model.acquisition.Detector
 
ANNOTATERESTRICTION - Static variable in class ome.model.internal.Permissions
 
Annotation - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Annotation() - Constructor for class ome.model.annotations.Annotation
 
Annotation(Long) - Constructor for class ome.model.annotations.Annotation
 
Annotation(Long, boolean) - Constructor for class ome.model.annotations.Annotation
Main constructor.
Annotation.Details - Class in ome.model.annotations
 
AnnotationAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
AnnotationAnnotationLink() - Constructor for class ome.model.annotations.AnnotationAnnotationLink
 
AnnotationAnnotationLink(Long) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
 
AnnotationAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
Main constructor.
AnnotationAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.AnnotationAnnotationLink
 
AnnotationAnnotationLink.Details - Class in ome.model.annotations
 
annotationLinks - Variable in class ome.model.acquisition.Detector
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
 
annotationLinks - Variable in class ome.model.acquisition.Dichroic
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
 
annotationLinks - Variable in class ome.model.acquisition.Filter
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
 
annotationLinks - Variable in class ome.model.acquisition.Instrument
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
 
annotationLinks - Variable in class ome.model.acquisition.LightPath
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
 
annotationLinks - Variable in class ome.model.acquisition.LightSource
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
 
annotationLinks - Variable in class ome.model.acquisition.Objective
 
ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
 
annotationLinks - Variable in class ome.model.annotations.Annotation
 
ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
 
annotationLinks - Variable in class ome.model.containers.Dataset
 
ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
 
annotationLinks - Variable in class ome.model.containers.Folder
 
ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
 
annotationLinks - Variable in class ome.model.containers.Project
 
ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
 
annotationLinks - Variable in class ome.model.core.Channel
 
ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
 
annotationLinks - Variable in class ome.model.core.Image
 
ANNOTATIONLINKS - Static variable in class ome.model.core.Image
 
annotationLinks - Variable in class ome.model.core.OriginalFile
 
ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
 
annotationLinks - Variable in class ome.model.core.PlaneInfo
 
ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
 
annotationLinks - Variable in class ome.model.fs.Fileset
 
ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
 
annotationLinks - Variable in class ome.model.meta.Experimenter
 
ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
 
annotationLinks - Variable in class ome.model.meta.ExperimenterGroup
 
ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
 
annotationLinks - Variable in class ome.model.meta.Namespace
 
ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
 
annotationLinks - Variable in class ome.model.meta.Node
 
ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
 
annotationLinks - Variable in class ome.model.meta.Session
 
ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
 
annotationLinks - Variable in class ome.model.roi.Roi
 
ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
 
annotationLinks - Variable in class ome.model.roi.Shape
 
ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
 
annotationLinks - Variable in class ome.model.screen.Plate
 
ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
 
annotationLinks - Variable in class ome.model.screen.PlateAcquisition
 
ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
 
annotationLinks - Variable in class ome.model.screen.Reagent
 
ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
 
annotationLinks - Variable in class ome.model.screen.Screen
 
ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
 
annotationLinks - Variable in class ome.model.screen.Well
 
ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Detector
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Dichroic
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Instrument
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightSource
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.acquisition.Objective
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.annotations.Annotation
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Project
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Channel
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.OriginalFile
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.core.PlaneInfo
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.fs.Fileset
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Experimenter
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.ExperimenterGroup
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Namespace
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Node
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.meta.Session
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Roi
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Shape
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Plate
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.PlateAcquisition
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Reagent
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Screen
 
ANNOTATIONLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Well
 
ApiUsageException - Exception in ome.conditions
Alerts a user to a misuse of an Omero method call.
ApiUsageException(String) - Constructor for exception ome.conditions.ApiUsageException
 
Arc - Class in ome.model.acquisition
 
Arc() - Constructor for class ome.model.acquisition.Arc
 
Arc(Long) - Constructor for class ome.model.acquisition.Arc
 
Arc(Long, boolean) - Constructor for class ome.model.acquisition.Arc
Main constructor.
Arc(ArcType) - Constructor for class ome.model.acquisition.Arc
 
archived - Variable in class ome.model.core.Image
 
ARCHIVED - Static variable in class ome.model.core.Image
 
ArcType - Class in ome.model.enums
 
ArcType() - Constructor for class ome.model.enums.ArcType
 
ArcType(Long) - Constructor for class ome.model.enums.ArcType
 
ArcType(Long, boolean) - Constructor for class ome.model.enums.ArcType
Main constructor.
ArcType(String) - Constructor for class ome.model.enums.ArcType
 
ArcType.Details - Class in ome.model.enums
 
args() - Method in class ome.util.SqlAction.DeleteLog
 
asBigInteger() - Method in class ome.util.Counter
 
assemble(Serializable, Object) - Method in class ome.model.units.GenericEnumType
 
atime - Variable in class ome.model.core.OriginalFile
 
ATIME - Static variable in class ome.model.core.OriginalFile
 
attenuation - Variable in class ome.model.acquisition.LightSettings
 
ATTENUATION - Static variable in class ome.model.acquisition.LightSettings
 
AuthenticationException - Exception in ome.conditions
Invalid username and/or credential provided.
AuthenticationException(String) - Constructor for exception ome.conditions.AuthenticationException
 
axis - Variable in class ome.model.display.ProjectionDef
 
AXIS - Static variable in class ome.model.display.ProjectionDef
 

B

backOff - Variable in exception ome.conditions.ConcurrencyException
 
BasicAnnotation - Class in ome.model.annotations
 
BasicAnnotation() - Constructor for class ome.model.annotations.BasicAnnotation
 
BasicAnnotation(Long) - Constructor for class ome.model.annotations.BasicAnnotation
 
BasicAnnotation(Long, boolean) - Constructor for class ome.model.annotations.BasicAnnotation
Main constructor.
beforeFilter(String, Object) - Method in class ome.util.ContextFilter
 
BigResult - Exception in ome.model.units
Checked exception which is thrown from unit methods which can possibly overflow.
BigResult(BigDecimal, String) - Constructor for exception ome.model.units.BigResult
 
binning - Variable in class ome.model.acquisition.DetectorSettings
 
BINNING - Static variable in class ome.model.acquisition.DetectorSettings
 
Binning - Class in ome.model.enums
 
Binning() - Constructor for class ome.model.enums.Binning
 
Binning(Long) - Constructor for class ome.model.enums.Binning
 
Binning(Long, boolean) - Constructor for class ome.model.enums.Binning
Main constructor.
Binning(String) - Constructor for class ome.model.enums.Binning
 
Binning.Details - Class in ome.model.enums
 
bit(Permissions.Flag) - Static method in class ome.model.internal.Permissions
returns the order of the bit representing the given Permissions.Flag.
bit(Permissions.Role, Permissions.Right) - Static method in class ome.model.internal.Permissions
returns the order of the bit representing the given Permissions.Role and Permissions.Right.
BIT - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
bitResolution - Variable in class ome.model.display.QuantumDef
 
BITRESOLUTION - Static variable in class ome.model.display.QuantumDef
 
bitSize - Variable in class ome.model.enums.PixelsType
 
BITSIZE - Static variable in class ome.model.enums.PixelsType
 
blue - Variable in class ome.model.core.Channel
 
BLUE - Static variable in class ome.model.core.Channel
 
blue - Variable in class ome.model.display.ChannelBinding
 
BLUE - Static variable in class ome.model.display.ChannelBinding
 
blue - Variable in class ome.model.screen.Well
 
BLUE - Static variable in class ome.model.screen.Well
 
BooleanAnnotation - Class in ome.model.annotations
 
BooleanAnnotation() - Constructor for class ome.model.annotations.BooleanAnnotation
 
BooleanAnnotation(Long) - Constructor for class ome.model.annotations.BooleanAnnotation
 
BooleanAnnotation(Long, boolean) - Constructor for class ome.model.annotations.BooleanAnnotation
Main constructor.
boolValue - Variable in class ome.model.annotations.BooleanAnnotation
 
BOOLVALUE - Static variable in class ome.model.annotations.BooleanAnnotation
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsElectricPotential
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsFrequency
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsLength
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsPower
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsPressure
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsTemperature
 
bySymbol(String) - Static method in enum ome.model.enums.UnitsTime
 
BYTE - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
bytes - Variable in class ome.model.roi.Mask
 
BYTES - Static variable in class ome.model.roi.Mask
 
bytesPerPixel - Variable in class ome.util.PixelData
The number of bytes per pixel.
bytesPerPixel() - Method in class ome.util.PixelData
Returns the number of byte per pixel for the pixel data.

C

c2c() - Method in class ome.util.ModelMapper
TODO identity versus null mappings
cache() - Method in class ome.parameters.Parameters
Deprecated.
experimental: may be wholly removed in next major version
cacheable - Variable in class ome.parameters.Options
 
calibratedMagnification - Variable in class ome.model.acquisition.Objective
 
CALIBRATEDMAGNIFICATION - Static variable in class ome.model.acquisition.Objective
 
call(IObject) - Method in interface ome.util.CBlock
invoke this block.
call(IObject) - Method in class ome.util.IdBlock
 
CBlock<E> - Interface in ome.util
Block template used to "C"ollect the results of some function called on each IObject in a collection.
cdEnd - Variable in class ome.model.display.QuantumDef
 
CDEND - Static variable in class ome.model.display.QuantumDef
 
cdStart - Variable in class ome.model.display.QuantumDef
 
CDSTART - Static variable in class ome.model.display.QuantumDef
 
CGLIB_IDENTIFIER - Static variable in class ome.util.Utils
 
changeGroupPermissions(Long, Long) - Method in interface ome.util.SqlAction
 
changeGroupPermissions(Long, Long) - Method in class ome.util.SqlAction.Impl
 
changeTablePermissionsForGroup(String, Long, Long) - Method in interface ome.util.SqlAction
 
changeTablePermissionsForGroup(String, Long, Long) - Method in class ome.util.SqlAction.Impl
 
Channel - Class in ome.model.core
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Channel() - Constructor for class ome.model.core.Channel
 
Channel(Long) - Constructor for class ome.model.core.Channel
 
Channel(Long, boolean) - Constructor for class ome.model.core.Channel
Main constructor.
Channel(LogicalChannel, Pixels) - Constructor for class ome.model.core.Channel
 
Channel.Details - Class in ome.model.core
 
ChannelAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ChannelAnnotationLink() - Constructor for class ome.model.annotations.ChannelAnnotationLink
 
ChannelAnnotationLink(Long) - Constructor for class ome.model.annotations.ChannelAnnotationLink
 
ChannelAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ChannelAnnotationLink
Main constructor.
ChannelAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ChannelAnnotationLink
 
ChannelAnnotationLink.Details - Class in ome.model.annotations
 
ChannelBinding - Class in ome.model.display
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ChannelBinding() - Constructor for class ome.model.display.ChannelBinding
 
ChannelBinding(Long) - Constructor for class ome.model.display.ChannelBinding
 
ChannelBinding(Long, boolean) - Constructor for class ome.model.display.ChannelBinding
Main constructor.
ChannelBinding(RenderingDef, Family, Double, Double, Double, Boolean, Boolean, Integer, Integer, Integer, Integer) - Constructor for class ome.model.display.ChannelBinding
 
channelBinding - Variable in class ome.model.display.CodomainMapContext
 
CHANNELBINDING - Static variable in class ome.model.display.CodomainMapContext
 
ChannelBinding.Details - Class in ome.model.display
 
channels - Variable in class ome.model.core.LogicalChannel
 
CHANNELS - Static variable in class ome.model.core.LogicalChannel
 
channels - Variable in class ome.model.core.Pixels
 
CHANNELS - Static variable in class ome.model.core.Pixels
 
ChecksumAlgorithm - Class in ome.model.enums
 
ChecksumAlgorithm() - Constructor for class ome.model.enums.ChecksumAlgorithm
 
ChecksumAlgorithm(Long) - Constructor for class ome.model.enums.ChecksumAlgorithm
 
ChecksumAlgorithm(Long, boolean) - Constructor for class ome.model.enums.ChecksumAlgorithm
Main constructor.
ChecksumAlgorithm(String) - Constructor for class ome.model.enums.ChecksumAlgorithm
 
ChecksumAlgorithm.Details - Class in ome.model.enums
 
CHGRPRESTRICTION - Static variable in class ome.model.internal.Permissions
 
child - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
CHILD - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
child() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
child - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
CHILD - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
child() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
child - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
CHILD - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
child() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
child - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
CHILD - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
child() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
child - Variable in class ome.model.annotations.AnnotationAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
child() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
child - Variable in class ome.model.annotations.ChannelAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
child() - Method in class ome.model.annotations.ChannelAnnotationLink
 
child - Variable in class ome.model.annotations.DatasetAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
child() - Method in class ome.model.annotations.DatasetAnnotationLink
 
child - Variable in class ome.model.annotations.DetectorAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
child() - Method in class ome.model.annotations.DetectorAnnotationLink
 
child - Variable in class ome.model.annotations.DichroicAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
child() - Method in class ome.model.annotations.DichroicAnnotationLink
 
child - Variable in class ome.model.annotations.ExperimenterAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
child() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
child - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
child() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
child - Variable in class ome.model.annotations.FilesetAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
child() - Method in class ome.model.annotations.FilesetAnnotationLink
 
child - Variable in class ome.model.annotations.FilterAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.FilterAnnotationLink
 
child() - Method in class ome.model.annotations.FilterAnnotationLink
 
child - Variable in class ome.model.annotations.FolderAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.FolderAnnotationLink
 
child() - Method in class ome.model.annotations.FolderAnnotationLink
 
child - Variable in class ome.model.annotations.ImageAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ImageAnnotationLink
 
child() - Method in class ome.model.annotations.ImageAnnotationLink
 
child - Variable in class ome.model.annotations.InstrumentAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
child() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
child - Variable in class ome.model.annotations.LightPathAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
child() - Method in class ome.model.annotations.LightPathAnnotationLink
 
child - Variable in class ome.model.annotations.LightSourceAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
child() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
child - Variable in class ome.model.annotations.NamespaceAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
child() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
child - Variable in class ome.model.annotations.NodeAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.NodeAnnotationLink
 
child() - Method in class ome.model.annotations.NodeAnnotationLink
 
child - Variable in class ome.model.annotations.ObjectiveAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
child() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
child - Variable in class ome.model.annotations.OriginalFileAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
child() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
child - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
child() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
child - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
child() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
child - Variable in class ome.model.annotations.PlateAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.PlateAnnotationLink
 
child() - Method in class ome.model.annotations.PlateAnnotationLink
 
child - Variable in class ome.model.annotations.ProjectAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
child() - Method in class ome.model.annotations.ProjectAnnotationLink
 
child - Variable in class ome.model.annotations.ReagentAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
child() - Method in class ome.model.annotations.ReagentAnnotationLink
 
child - Variable in class ome.model.annotations.RoiAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.RoiAnnotationLink
 
child() - Method in class ome.model.annotations.RoiAnnotationLink
 
child - Variable in class ome.model.annotations.ScreenAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
child() - Method in class ome.model.annotations.ScreenAnnotationLink
 
child - Variable in class ome.model.annotations.SessionAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.SessionAnnotationLink
 
child() - Method in class ome.model.annotations.SessionAnnotationLink
 
child - Variable in class ome.model.annotations.ShapeAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
child() - Method in class ome.model.annotations.ShapeAnnotationLink
 
child - Variable in class ome.model.annotations.WellAnnotationLink
 
CHILD - Static variable in class ome.model.annotations.WellAnnotationLink
 
child() - Method in class ome.model.annotations.WellAnnotationLink
 
child - Variable in class ome.model.containers.DatasetImageLink
 
CHILD - Static variable in class ome.model.containers.DatasetImageLink
 
child() - Method in class ome.model.containers.DatasetImageLink
 
child - Variable in class ome.model.containers.FolderImageLink
 
CHILD - Static variable in class ome.model.containers.FolderImageLink
 
child() - Method in class ome.model.containers.FolderImageLink
 
child - Variable in class ome.model.containers.FolderRoiLink
 
CHILD - Static variable in class ome.model.containers.FolderRoiLink
 
child() - Method in class ome.model.containers.FolderRoiLink
 
child - Variable in class ome.model.containers.ProjectDatasetLink
 
CHILD - Static variable in class ome.model.containers.ProjectDatasetLink
 
child() - Method in class ome.model.containers.ProjectDatasetLink
 
child - Variable in class ome.model.core.PixelsOriginalFileMap
 
CHILD - Static variable in class ome.model.core.PixelsOriginalFileMap
 
child() - Method in class ome.model.core.PixelsOriginalFileMap
 
child - Variable in class ome.model.fs.FilesetJobLink
 
CHILD - Static variable in class ome.model.fs.FilesetJobLink
 
child() - Method in class ome.model.fs.FilesetJobLink
 
child - Variable in class ome.model.jobs.JobOriginalFileLink
 
CHILD - Static variable in class ome.model.jobs.JobOriginalFileLink
 
child() - Method in class ome.model.jobs.JobOriginalFileLink
 
child - Variable in class ome.model.meta.GroupExperimenterMap
 
CHILD - Static variable in class ome.model.meta.GroupExperimenterMap
 
child() - Method in class ome.model.meta.GroupExperimenterMap
 
child - Variable in class ome.model.meta.ShareMember
 
CHILD - Static variable in class ome.model.meta.ShareMember
 
child() - Method in class ome.model.meta.ShareMember
 
child - Variable in class ome.model.screen.ScreenPlateLink
 
CHILD - Static variable in class ome.model.screen.ScreenPlateLink
 
child() - Method in class ome.model.screen.ScreenPlateLink
 
child - Variable in class ome.model.screen.WellReagentLink
 
CHILD - Static variable in class ome.model.screen.WellReagentLink
 
child() - Method in class ome.model.screen.WellReagentLink
 
childFolders - Variable in class ome.model.containers.Folder
 
CHILDFOLDERS - Static variable in class ome.model.containers.Folder
 
CHOWNRESTRICTION - Static variable in class ome.model.internal.Permissions
 
CLASS - Static variable in class ome.parameters.Parameters
named parameter "class".
clearAnnotationLinks() - Method in class ome.model.acquisition.Detector
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Dichroic
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Filter
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Instrument
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.LightPath
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.LightSource
clears the set.
clearAnnotationLinks() - Method in class ome.model.acquisition.Objective
clears the set.
clearAnnotationLinks() - Method in class ome.model.annotations.Annotation
clears the set.
clearAnnotationLinks() - Method in class ome.model.containers.Dataset
clears the set.
clearAnnotationLinks() - Method in class ome.model.containers.Folder
clears the set.
clearAnnotationLinks() - Method in class ome.model.containers.Project
clears the set.
clearAnnotationLinks() - Method in class ome.model.core.Channel
clears the set.
clearAnnotationLinks() - Method in class ome.model.core.Image
clears the set.
clearAnnotationLinks() - Method in class ome.model.core.OriginalFile
clears the set.
clearAnnotationLinks() - Method in class ome.model.core.PlaneInfo
clears the set.
clearAnnotationLinks() - Method in class ome.model.fs.Fileset
clears the set.
clearAnnotationLinks() - Method in interface ome.model.IAnnotated
 
clearAnnotationLinks() - Method in class ome.model.meta.Experimenter
clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup
clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.Namespace
clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.Node
clears the set.
clearAnnotationLinks() - Method in class ome.model.meta.Session
clears the set.
clearAnnotationLinks() - Method in class ome.model.roi.Roi
clears the set.
clearAnnotationLinks() - Method in class ome.model.roi.Shape
clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Plate
clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition
clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Reagent
clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Screen
clears the set.
clearAnnotationLinks() - Method in class ome.model.screen.Well
clears the set.
clearChannels() - Method in class ome.model.core.LogicalChannel
clears the set.
clearChannels() - Method in class ome.model.core.Pixels
clears the set.
clearChildFolders() - Method in class ome.model.containers.Folder
clears the set.
clearDatasetLinks() - Method in class ome.model.containers.Project
clears the set.
clearDatasetLinks() - Method in class ome.model.core.Image
clears the set.
clearDetector() - Method in class ome.model.acquisition.Instrument
clears the set.
clearDichroic() - Method in class ome.model.acquisition.Instrument
clears the set.
clearEmissionFilterLinks() - Method in class ome.model.acquisition.Filter
clears the set.
clearEmissionFilterLinks() - Method in class ome.model.acquisition.FilterSet
clears the set.
clearEmissionFilterLinks() - Method in class ome.model.acquisition.LightPath
clears the set.
clearEvents() - Method in class ome.model.meta.Session
clears the set.
clearExcitationFilterLinks() - Method in class ome.model.acquisition.Filter
clears the set.
clearExcitationFilterLinks() - Method in class ome.model.acquisition.FilterSet
clears the set.
clearExcitationFilterLinks() - Method in class ome.model.acquisition.LightPath
clears the set.
clearExperimenterGroupLinks() - Method in class ome.model.meta.Experimenter
clears the set.
clearExperimenterLinks() - Method in class ome.model.meta.ExperimenterGroup
clears the set.
clearFilesetEntries() - Method in class ome.model.core.OriginalFile
clears the set.
clearFilter() - Method in class ome.model.acquisition.Instrument
clears the set.
clearFiltered() - Method in class ome.model.internal.Details
all currently marked collections are released.
clearFilterSet() - Method in class ome.model.acquisition.Instrument
clears the set.
clearFolderLinks() - Method in class ome.model.core.Image
clears the set.
clearFolderLinks() - Method in class ome.model.roi.Roi
clears the set.
clearImageLinks() - Method in class ome.model.containers.Dataset
clears the set.
clearImageLinks() - Method in class ome.model.containers.Folder
clears the set.
clearImages() - Method in class ome.model.fs.Fileset
clears the set.
clearJobLinks() - Method in class ome.model.fs.Fileset
clears the set.
clearLightSource() - Method in class ome.model.acquisition.Instrument
clears the set.
clearLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation
clears the set.
clearLogs() - Method in class ome.model.meta.Event
clears the set.
clearMicrobeamManipulation() - Method in class ome.model.experiment.Experiment
clears the set.
clearObjective() - Method in class ome.model.acquisition.Instrument
clears the set.
clearOriginalFileLinks() - Method in class ome.model.core.Pixels
clears the set.
clearOriginalFileLinks() - Method in class ome.model.jobs.Job
clears the set.
clearOtf() - Method in class ome.model.acquisition.Instrument
clears the set.
clearPermissionsBit(String, long, int) - Method in interface ome.util.SqlAction
Sets the given permissions bit to 0.
clearPermissionsBit(String, long, int) - Method in class ome.util.SqlAction.Impl
 
clearPixels() - Method in class ome.model.core.Image
clears the set.
clearPixelsLinks() - Method in class ome.model.core.OriginalFile
clears the set.
clearPlaneInfo() - Method in class ome.model.core.Pixels
clears the set.
clearPlateAcquisitions() - Method in class ome.model.screen.Plate
clears the set.
clearPlateLinks() - Method in class ome.model.screen.Screen
clears the set.
clearProjections() - Method in class ome.model.display.RenderingDef
clears the set.
clearProjectLinks() - Method in class ome.model.containers.Dataset
clears the set.
clearReagentLinks() - Method in class ome.model.screen.Well
clears the set.
clearReagents() - Method in class ome.model.screen.Screen
clears the set.
clearRoiLinks() - Method in class ome.model.containers.Folder
clears the set.
clearRois() - Method in class ome.model.core.Image
clears the set.
clearScreenLinks() - Method in class ome.model.screen.Plate
clears the set.
clearSessions() - Method in class ome.model.meta.Node
clears the set.
clearSettings() - Method in class ome.model.core.Pixels
clears the set.
clearShapes() - Method in class ome.model.roi.Roi
clears the set.
clearSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding
clears the set.
clearThumbnails() - Method in class ome.model.core.Pixels
clears the set.
clearUsedFiles() - Method in class ome.model.fs.Fileset
clears the set.
clearWaveRendering() - Method in class ome.model.display.RenderingDef
clears the set.
clearWellLinks() - Method in class ome.model.screen.Reagent
clears the set.
clearWells() - Method in class ome.model.screen.Plate
clears the set.
clearWellSample() - Method in class ome.model.screen.PlateAcquisition
clears the set.
clearWellSamples() - Method in class ome.model.core.Image
clears the set.
clearWellSamples() - Method in class ome.model.screen.Well
clears the set.
clientPath - Variable in class ome.model.fs.FilesetEntry
 
CLIENTPATH - Static variable in class ome.model.fs.FilesetEntry
 
close() - Method in class ome.services.fulltext.ConfiguredAnalyzer
 
closed - Variable in class ome.model.meta.Session
 
CLOSED - Static variable in class ome.model.meta.Session
 
closeNode(String) - Method in interface ome.util.SqlAction
 
closeNode(String) - Method in class ome.util.SqlAction.Impl
 
closeNodeSessions(String) - Method in interface ome.util.SqlAction
 
closeNodeSessions(String) - Method in class ome.util.SqlAction.Impl
 
closeQuietly(Closeable) - Static method in class ome.util.Utils
 
closeSessions(String) - Method in class ome.util.actions.PostgresSqlAction
 
closeSessions(String) - Method in interface ome.util.SqlAction
 
co2percent - Variable in class ome.model.acquisition.ImagingEnvironment
 
CO2PERCENT - Static variable in class ome.model.acquisition.ImagingEnvironment
 
CodomainMapContext - Class in ome.model.display
These filter definitions are used by the security system to eliminate non-readable objects from queries.
CodomainMapContext() - Constructor for class ome.model.display.CodomainMapContext
 
CodomainMapContext(Long) - Constructor for class ome.model.display.CodomainMapContext
 
CodomainMapContext(Long, boolean) - Constructor for class ome.model.display.CodomainMapContext
Main constructor.
CodomainMapContext(ChannelBinding) - Constructor for class ome.model.display.CodomainMapContext
 
CodomainMapContext.Details - Class in ome.model.display
 
coefficient - Variable in class ome.model.display.ChannelBinding
 
COEFFICIENT - Static variable in class ome.model.display.ChannelBinding
 
COLLAB_READLINK - Static variable in class ome.model.internal.Permissions
an immutable Permissions instance with read and write permissions for group members.
COLLAB_READONLY - Static variable in class ome.model.internal.Permissions
an immutable Permissions instance with permissions for group members to read other members' data.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Detector
takes a CBlock and calls the block once for each ome.model.annotations.DetectorAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Dichroic
takes a CBlock and calls the block once for each ome.model.annotations.DichroicAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.annotations.FilterAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.annotations.InstrumentAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.annotations.LightPathAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.LightSource
takes a CBlock and calls the block once for each ome.model.annotations.LightSourceAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.acquisition.Objective
takes a CBlock and calls the block once for each ome.model.annotations.ObjectiveAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.annotations.Annotation
takes a CBlock and calls the block once for each ome.model.annotations.AnnotationAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.annotations.DatasetAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.annotations.FolderAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.containers.Project
takes a CBlock and calls the block once for each ome.model.annotations.ProjectAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.Channel
takes a CBlock and calls the block once for each ome.model.annotations.ChannelAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.annotations.ImageAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.OriginalFile
takes a CBlock and calls the block once for each ome.model.annotations.OriginalFileAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.core.PlaneInfo
takes a CBlock and calls the block once for each ome.model.annotations.PlaneInfoAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.annotations.FilesetAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in interface ome.model.IAnnotated
 
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Experimenter
takes a CBlock and calls the block once for each ome.model.annotations.ExperimenterAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
takes a CBlock and calls the block once for each ome.model.annotations.ExperimenterGroupAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Namespace
takes a CBlock and calls the block once for each ome.model.annotations.NamespaceAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Node
takes a CBlock and calls the block once for each ome.model.annotations.NodeAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.meta.Session
takes a CBlock and calls the block once for each ome.model.annotations.SessionAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.roi.Roi
takes a CBlock and calls the block once for each ome.model.annotations.RoiAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.roi.Shape
takes a CBlock and calls the block once for each ome.model.annotations.ShapeAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.annotations.PlateAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition
takes a CBlock and calls the block once for each ome.model.annotations.PlateAcquisitionAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Reagent
takes a CBlock and calls the block once for each ome.model.annotations.ReagentAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Screen
takes a CBlock and calls the block once for each ome.model.annotations.ScreenAnnotationLink while collecting the results.
collectAnnotationLinks(CBlock<E>) - Method in class ome.model.screen.Well
takes a CBlock and calls the block once for each ome.model.annotations.WellAnnotationLink while collecting the results.
collectChannels(CBlock<E>) - Method in class ome.model.core.LogicalChannel
takes a CBlock and calls the block once for each ome.model.core.Channel while collecting the results.
collectChannels(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.core.Channel while collecting the results.
collectChildFolders(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.
collectDatasetLinks(CBlock<E>) - Method in class ome.model.containers.Project
takes a CBlock and calls the block once for each ome.model.containers.ProjectDatasetLink while collecting the results.
collectDatasetLinks(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.containers.DatasetImageLink while collecting the results.
collectDetector(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.Detector while collecting the results.
collectDichroic(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.Dichroic while collecting the results.
CollectedACLViolations - Exception in ome.conditions.acl
User has attempted an action which is not permitted by the Permissions of a given instance.
CollectedACLViolations(String) - Constructor for exception ome.conditions.acl.CollectedACLViolations
 
collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetEmissionFilterLink while collecting the results.
collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetEmissionFilterLink while collecting the results.
collectEmissionFilterLink(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.acquisition.LightPathEmissionFilterLink while collecting the results.
collectEvents(CBlock<E>) - Method in class ome.model.meta.Session
takes a CBlock and calls the block once for each ome.model.meta.Event while collecting the results.
collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetExcitationFilterLink while collecting the results.
collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSetExcitationFilterLink while collecting the results.
collectExcitationFilterLink(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.acquisition.LightPathExcitationFilterLink while collecting the results.
collectFilesetEntries(CBlock<E>) - Method in class ome.model.core.OriginalFile
takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while collecting the results.
collectFilter(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
collectFilterSet(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.
collectFolderLinks(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.containers.FolderImageLink while collecting the results.
collectFolderLinks(CBlock<E>) - Method in class ome.model.roi.Roi
takes a CBlock and calls the block once for each ome.model.containers.FolderRoiLink while collecting the results.
collectGroupExperimenterMap(CBlock<E>) - Method in class ome.model.meta.Experimenter
takes a CBlock and calls the block once for each ome.model.meta.GroupExperimenterMap while collecting the results.
collectGroupExperimenterMap(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
takes a CBlock and calls the block once for each ome.model.meta.GroupExperimenterMap while collecting the results.
collectImageLinks(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.containers.DatasetImageLink while collecting the results.
collectImageLinks(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.containers.FolderImageLink while collecting the results.
collectImages(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.
collectJobLinks(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.fs.FilesetJobLink while collecting the results.
collectLightSource(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.LightSource while collecting the results.
collectLightSourceSettings(CBlock<E>) - Method in class ome.model.experiment.MicrobeamManipulation
takes a CBlock and calls the block once for each ome.model.acquisition.LightSettings while collecting the results.
collectLogs(CBlock<E>) - Method in class ome.model.meta.Event
takes a CBlock and calls the block once for each ome.model.meta.EventLog while collecting the results.
collectMicrobeamManipulation(CBlock<E>) - Method in class ome.model.experiment.Experiment
takes a CBlock and calls the block once for each ome.model.experiment.MicrobeamManipulation while collecting the results.
collectObjective(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.Objective while collecting the results.
collectOriginalFileLinks(CBlock<E>) - Method in class ome.model.jobs.Job
takes a CBlock and calls the block once for each ome.model.jobs.JobOriginalFileLink while collecting the results.
collectOtf(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.acquisition.OTF while collecting the results.
collectPixels(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.core.Pixels while collecting the results.
collectPixelsFileMaps(CBlock<E>) - Method in class ome.model.core.OriginalFile
takes a CBlock and calls the block once for each ome.model.core.PixelsOriginalFileMap while collecting the results.
collectPixelsFileMaps(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.core.PixelsOriginalFileMap while collecting the results.
collectPlaneInfo(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.core.PlaneInfo while collecting the results.
collectPlateAcquisitions(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.screen.PlateAcquisition while collecting the results.
collectPlateLinks(CBlock<E>) - Method in class ome.model.screen.Screen
takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results.
collectProjections(CBlock<E>) - Method in class ome.model.display.RenderingDef
takes a CBlock and calls the block once for each ome.model.display.ProjectionDef while collecting the results.
collectProjectLinks(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.containers.ProjectDatasetLink while collecting the results.
collectReagentLinks(CBlock<E>) - Method in class ome.model.screen.Well
takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while collecting the results.
collectReagents(CBlock<E>) - Method in class ome.model.screen.Screen
takes a CBlock and calls the block once for each ome.model.screen.Reagent while collecting the results.
collectRoiLinks(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.containers.FolderRoiLink while collecting the results.
collectRois(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.roi.Roi while collecting the results.
collectScreenLinks(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results.
collectSessions(CBlock<E>) - Method in class ome.model.meta.Node
takes a CBlock and calls the block once for each ome.model.meta.Session while collecting the results.
collectSettings(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.display.RenderingDef while collecting the results.
collectShapes(CBlock<E>) - Method in class ome.model.roi.Roi
takes a CBlock and calls the block once for each ome.model.roi.Shape while collecting the results.
collectSpatialDomainEnhancement(CBlock<E>) - Method in class ome.model.display.ChannelBinding
takes a CBlock and calls the block once for each ome.model.display.CodomainMapContext while collecting the results.
collectThumbnails(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.display.Thumbnail while collecting the results.
collectUsedFiles(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while collecting the results.
collectWaveRendering(CBlock<E>) - Method in class ome.model.display.RenderingDef
takes a CBlock and calls the block once for each ome.model.display.ChannelBinding while collecting the results.
collectWellLinks(CBlock<E>) - Method in class ome.model.screen.Reagent
takes a CBlock and calls the block once for each ome.model.screen.WellReagentLink while collecting the results.
collectWells(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.
collectWellSample(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition
takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.
collectWellSamples(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.
collectWellSamples(CBlock<E>) - Method in class ome.model.screen.Well
takes a CBlock and calls the block once for each ome.model.screen.WellSample while collecting the results.
column - Variable in class ome.model.screen.Well
 
COLUMN - Static variable in class ome.model.screen.Well
 
columnNamingConvention - Variable in class ome.model.screen.Plate
 
COLUMNNAMINGCONVENTION - Static variable in class ome.model.screen.Plate
 
columns - Variable in class ome.model.screen.Plate
 
COLUMNS - Static variable in class ome.model.screen.Plate
 
CommentAnnotation - Class in ome.model.annotations
 
CommentAnnotation() - Constructor for class ome.model.annotations.CommentAnnotation
 
CommentAnnotation(Long) - Constructor for class ome.model.annotations.CommentAnnotation
 
CommentAnnotation(Long, boolean) - Constructor for class ome.model.annotations.CommentAnnotation
Main constructor.
compression - Variable in class ome.model.display.RenderingDef
 
COMPRESSION - Static variable in class ome.model.display.RenderingDef
 
ConcurrencyException - Exception in ome.conditions
Error due to simultaneous access of some resource.
ConcurrencyException(String, long) - Constructor for exception ome.conditions.ConcurrencyException
 
config - Variable in class ome.model.meta.Experimenter
 
CONFIG - Static variable in class ome.model.meta.Experimenter
 
config - Variable in class ome.model.meta.ExperimenterGroup
 
CONFIG - Static variable in class ome.model.meta.ExperimenterGroup
 
CONFIG_KEY - Static variable in class ome.util.PixelData
 
configure(Type, Properties, Dialect) - Method in class ome.util.TableIdGenerator
 
ConfiguredAnalyzer - Class in ome.services.fulltext
A full-text search analyzer usable by the OMERO model.
ConfiguredAnalyzer() - Constructor for class ome.services.fulltext.ConfiguredAnalyzer
Construct an analyzer wrapping the same class as previously passed to ConfiguredAnalyzer.ConfiguredAnalyzer(Class).
ConfiguredAnalyzer(Class<? extends Analyzer>) - Constructor for class ome.services.fulltext.ConfiguredAnalyzer
Construct an analyzer wrapping the given class.
configValue(String) - Method in interface ome.util.SqlAction
 
configValue(String) - Method in class ome.util.SqlAction.Impl
 
conn - Variable in class ome.model.meta.Node
 
CONN - Static variable in class ome.model.meta.Node
 
constant - Variable in class ome.model.display.PlaneSlicingContext
 
CONSTANT - Static variable in class ome.model.display.PlaneSlicingContext
 
containingEvent - Variable in class ome.model.meta.Event
 
CONTAININGEVENT - Static variable in class ome.model.meta.Event
 
contextAt(int) - Method in class ome.model.internal.Details
 
ContextFilter - Class in ome.util
modified (hierarchical) visitor pattern.
ContextFilter() - Constructor for class ome.util.ContextFilter
 
contexts - Variable in class ome.model.internal.Details
 
contrastMethod - Variable in class ome.model.core.LogicalChannel
 
CONTRASTMETHOD - Static variable in class ome.model.core.LogicalChannel
 
ContrastMethod - Class in ome.model.enums
 
ContrastMethod() - Constructor for class ome.model.enums.ContrastMethod
 
ContrastMethod(Long) - Constructor for class ome.model.enums.ContrastMethod
 
ContrastMethod(Long, boolean) - Constructor for class ome.model.enums.ContrastMethod
Main constructor.
ContrastMethod(String) - Constructor for class ome.model.enums.ContrastMethod
 
ContrastMethod.Details - Class in ome.model.enums
 
ContrastStretchingContext - Class in ome.model.display
 
ContrastStretchingContext() - Constructor for class ome.model.display.ContrastStretchingContext
 
ContrastStretchingContext(Long) - Constructor for class ome.model.display.ContrastStretchingContext
 
ContrastStretchingContext(Long, boolean) - Constructor for class ome.model.display.ContrastStretchingContext
Main constructor.
ContrastStretchingContext(Integer, Integer, Integer, Integer) - Constructor for class ome.model.display.ContrastStretchingContext
 
Conversion - Class in ome.model.units
Base-functor like object which can be used for preparing complex equations for converting from one unit to another.
Conversion(Conversion...) - Constructor for class ome.model.units.Conversion
Primary constructor for a Conversion object.
Conversion.Add - Class in ome.model.units
Sums all Conversion instances via BigDecimal.add(BigDecimal).
Conversion.Int - Class in ome.model.units
Simply is a representation of a possibly large integer.
Conversion.Mul - Class in ome.model.units
Multiplies all Conversion instances via BigDecimal.multiply(BigDecimal).
Conversion.Pow - Class in ome.model.units
Exponentiates two Conversion instances via BigDecimal.pow(int).
Conversion.Rat - Class in ome.model.units
Divides two Conversion instances via BigDecimal.divide(BigDecimal, MathContext).
Conversion.Sym - Class in ome.model.units
Simply represents the variable of the source unit so that Conversion.Sym.convert(double) just returns the value passed in.
conversions - Variable in class ome.model.units.Conversion
Conversions, if any, which are passed into the constructor of this instance.
convert(double) - Method in class ome.model.units.Conversion.Add
 
convert(double) - Method in class ome.model.units.Conversion
Primary operator for Conversion instances.
convert(double) - Method in class ome.model.units.Conversion.Int
Returns a BigDecimal representation of this int.
convert(double) - Method in class ome.model.units.Conversion.Mul
 
convert(double) - Method in class ome.model.units.Conversion.Pow
 
convert(double) - Method in class ome.model.units.Conversion.Rat
 
convert(double) - Method in class ome.model.units.Conversion.Sym
 
convertElectricPotential(ElectricPotential) - Static method in class ome.model.units.ElectricPotential
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertElectricPotential(ElectricPotential, Unit<ElectricPotential>) - Static method in class ome.model.units.ElectricPotential
 
convertElectricPotential(ElectricPotential, String) - Static method in class ome.model.units.ElectricPotential
 
convertFrequency(Frequency) - Static method in class ome.model.units.Frequency
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertFrequency(Frequency, Unit<Frequency>) - Static method in class ome.model.units.Frequency
 
convertFrequency(Frequency, String) - Static method in class ome.model.units.Frequency
 
convertLength(Length) - Static method in class ome.model.units.Length
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertLength(Length, Unit<Length>) - Static method in class ome.model.units.Length
 
convertLength(Length, String) - Static method in class ome.model.units.Length
 
convertPower(Power) - Static method in class ome.model.units.Power
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertPower(Power, Unit<Power>) - Static method in class ome.model.units.Power
 
convertPower(Power, String) - Static method in class ome.model.units.Power
 
convertPressure(Pressure) - Static method in class ome.model.units.Pressure
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertPressure(Pressure, Unit<Pressure>) - Static method in class ome.model.units.Pressure
 
convertPressure(Pressure, String) - Static method in class ome.model.units.Pressure
 
convertTemperature(Temperature) - Static method in class ome.model.units.Temperature
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertTemperature(Temperature, Unit<Temperature>) - Static method in class ome.model.units.Temperature
 
convertTemperature(Temperature, String) - Static method in class ome.model.units.Temperature
 
convertTime(Time) - Static method in class ome.model.units.Time
FIXME: this should likely take a default so that locations which don't want an exception can have log.warn("Using new PositiveFloat(1.0)!", e); return new PositiveFloat(1.0); or similar.
convertTime(Time, Unit<Time>) - Static method in class ome.model.units.Time
 
convertTime(Time, String) - Static method in class ome.model.units.Time
 
copy() - Method in class ome.model.internal.Details
 
copy(Details) - Method in class ome.model.internal.Details
Method which takes all field values from the given Details instance and copies them into the current instance.
copy(T) - Method in class ome.util.ShallowCopy
 
copyExtendedRestrictions() - Method in class ome.model.internal.Permissions
Produce a copy of restrictions for use elsewhere.
copyObject(Filterable, ModelMapper) - Method in interface ome.model.ModelBased
 
copyRestrictions() - Method in class ome.model.internal.Permissions
Deprecated.
copyRestrictions(String[]) - Method in class ome.model.internal.Permissions
Safely copy the source array.
copyRestrictions(boolean[], String[]) - Method in class ome.model.internal.Permissions
Deprecated.
copyRestrictions(int, Set<String>) - Method in class ome.model.internal.Permissions
Copy restrictions based on the integer returned by BasicACLVoter.
copyWhereUnset(Details, Details) - Method in class ome.model.internal.Details
For any field of this which is null (and is NOT null on mask -- assuming mask is not null), copy the same value from copyFrom into this object.
correction - Variable in class ome.model.acquisition.Objective
 
CORRECTION - Static variable in class ome.model.acquisition.Objective
 
Correction - Class in ome.model.enums
 
Correction() - Constructor for class ome.model.enums.Correction
 
Correction(Long) - Constructor for class ome.model.enums.Correction
 
Correction(Long, boolean) - Constructor for class ome.model.enums.Correction
Main constructor.
Correction(String) - Constructor for class ome.model.enums.Correction
 
Correction.Details - Class in ome.model.enums
 
correctionCollar - Variable in class ome.model.acquisition.ObjectiveSettings
 
CORRECTIONCOLLAR - Static variable in class ome.model.acquisition.ObjectiveSettings
 
CountCollectionPersister - Class in ome.util
CollectionPersister which knows how to handle the count views generated by dsl/resources/ome/dsl/views.dm.
CountCollectionPersister(Collection, CollectionRegionAccessStrategy, Configuration, SessionFactoryImplementor) - Constructor for class ome.util.CountCollectionPersister
 
Counter - Class in ome.util
A simple integral counter that can be incremented.
Counter() - Constructor for class ome.util.Counter
Create a new counter starting at zero.
countFormat(String) - Method in class ome.util.actions.PostgresSqlAction
 
countFormat(String) - Method in interface ome.util.SqlAction
 
create() - Static method in class ome.model.internal.Details
Call Details.create(Object[]) with null.
create(Object[]) - Static method in class ome.model.internal.Details
Factory method which returns a Details implementation for passing in API calls, but cannot be stored within an IObject instance.
createBufferedImage(int[], int, int) - Static method in class ome.util.ImageUtil
Creates a buffered image from a rendering engine RGB buffer without data copying.
createIdsTempTable(Collection<Long>) - Method in interface ome.util.SqlAction
Creates a temporary table filled with the given ids and returns its name.
createIdsTempTable(Collection<Long>) - Method in class ome.util.SqlAction.Impl
 
createInsertTrigger(String, String, String) - Method in interface ome.util.SqlAction
Creates an insert trigger of the given name, for the given table, with the given procedure.
createInsertTrigger(String, String, String) - Method in class ome.util.SqlAction.Impl
 
createSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction
 
createSavepoint(String) - Method in interface ome.util.SqlAction
 
CREATIONEVENT - Static variable in class ome.model.internal.Details
 
ctime - Variable in class ome.model.core.OriginalFile
 
CTIME - Static variable in class ome.model.core.OriginalFile
 
currentContext() - Method in class ome.util.ContextFilter
 
currentPatch - Variable in class ome.model.meta.DBPatch
 
CURRENTPATCH - Static variable in class ome.model.meta.DBPatch
 
currentUserNames() - Method in class ome.util.actions.PostgresSqlAction
 
currentUserNames() - Method in interface ome.util.SqlAction
 
currentVersion - Variable in class ome.model.meta.DBPatch
 
CURRENTVERSION - Static variable in class ome.model.meta.DBPatch
 
currValue(String) - Method in class ome.util.actions.PostgresSqlAction
 
currValue(String) - Method in interface ome.util.SqlAction
 
cutIn - Variable in class ome.model.acquisition.TransmittanceRange
 
CUTIN - Static variable in class ome.model.acquisition.TransmittanceRange
 
cutInTolerance - Variable in class ome.model.acquisition.TransmittanceRange
 
CUTINTOLERANCE - Static variable in class ome.model.acquisition.TransmittanceRange
 
cutOut - Variable in class ome.model.acquisition.TransmittanceRange
 
CUTOUT - Static variable in class ome.model.acquisition.TransmittanceRange
 
cutOutTolerance - Variable in class ome.model.acquisition.TransmittanceRange
 
CUTOUTTOLERANCE - Static variable in class ome.model.acquisition.TransmittanceRange
 

D

d - Variable in class ome.model.roi.Path
Deprecated.
 
D - Static variable in class ome.model.roi.Path
Deprecated.
 
data - Variable in class ome.model.meta.Share
 
DATA - Static variable in class ome.model.meta.Share
 
data - Variable in class ome.util.PixelData
The pixels data backing buffer.
DatabaseBusyException - Exception in ome.conditions
No connections are currently available for the database.
DatabaseBusyException(String, long) - Constructor for exception ome.conditions.DatabaseBusyException
 
Dataset - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Dataset() - Constructor for class ome.model.containers.Dataset
 
Dataset(Long) - Constructor for class ome.model.containers.Dataset
 
Dataset(Long, boolean) - Constructor for class ome.model.containers.Dataset
Main constructor.
Dataset(String) - Constructor for class ome.model.containers.Dataset
 
Dataset.Details - Class in ome.model.containers
 
DatasetAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
DatasetAnnotationLink() - Constructor for class ome.model.annotations.DatasetAnnotationLink
 
DatasetAnnotationLink(Long) - Constructor for class ome.model.annotations.DatasetAnnotationLink
 
DatasetAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DatasetAnnotationLink
Main constructor.
DatasetAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DatasetAnnotationLink
 
DatasetAnnotationLink.Details - Class in ome.model.annotations
 
DatasetImageLink - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
DatasetImageLink() - Constructor for class ome.model.containers.DatasetImageLink
 
DatasetImageLink(Long) - Constructor for class ome.model.containers.DatasetImageLink
 
DatasetImageLink(Long, boolean) - Constructor for class ome.model.containers.DatasetImageLink
Main constructor.
DatasetImageLink(IObject, IObject) - Constructor for class ome.model.containers.DatasetImageLink
 
DatasetImageLink.Details - Class in ome.model.containers
 
datasetLinks - Variable in class ome.model.containers.Project
 
DATASETLINKS - Static variable in class ome.model.containers.Project
 
datasetLinks - Variable in class ome.model.core.Image
 
DATASETLINKS - Static variable in class ome.model.core.Image
 
DATASETLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Project
 
DATASETLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
 
DBPatch - Class in ome.model.meta
 
DBPatch() - Constructor for class ome.model.meta.DBPatch
 
DBPatch(Long) - Constructor for class ome.model.meta.DBPatch
 
DBPatch(Long, boolean) - Constructor for class ome.model.meta.DBPatch
Main constructor.
DBPatch(String, Integer, String, Integer) - Constructor for class ome.model.meta.DBPatch
 
DBPatch.Details - Class in ome.model.meta
 
dbUuid() - Method in class ome.util.actions.PostgresSqlAction
 
dbUuid() - Method in interface ome.util.SqlAction
 
dbVersion() - Method in class ome.util.actions.PostgresSqlAction
 
dbVersion() - Method in interface ome.util.SqlAction
 
deepCopy(Object) - Method in class ome.model.units.GenericEnumType
 
defaultEventType - Variable in class ome.model.meta.Session
 
DEFAULTEVENTTYPE - Static variable in class ome.model.meta.Session
 
defaultSample - Variable in class ome.model.screen.Plate
 
DEFAULTSAMPLE - Static variable in class ome.model.screen.Plate
 
defaultT - Variable in class ome.model.display.RenderingDef
 
DEFAULTT - Static variable in class ome.model.display.RenderingDef
 
defaultZ - Variable in class ome.model.display.RenderingDef
 
DEFAULTZ - Static variable in class ome.model.display.RenderingDef
 
deferConstraints() - Method in class ome.util.actions.PostgresSqlAction
 
deferConstraints() - Method in interface ome.util.SqlAction
 
delConfigValue(String) - Method in interface ome.util.SqlAction
 
delConfigValue(String) - Method in class ome.util.SqlAction.Impl
 
delCurrentEventLog(String) - Method in class ome.util.actions.PostgresSqlAction
 
delCurrentEventLog(String) - Method in interface ome.util.SqlAction
 
delCurrentEventLog(String) - Method in class ome.util.SqlAction.Impl
 
deleteCurrentAdminPrivileges() - Method in interface ome.util.SqlAction
Delete the current light administrator privileges for the current transaction.
deleteCurrentAdminPrivileges() - Method in class ome.util.SqlAction.Impl
 
DeleteLog() - Constructor for class ome.util.SqlAction.DeleteLog
 
deleteOldAdminPrivileges(Collection<Long>) - Method in interface ome.util.SqlAction
Delete the current light administrator privileges for the given transactions.
deleteOldAdminPrivileges(Collection<Long>) - Method in class ome.util.SqlAction.Impl
 
deleteRepoDeleteLogs(SqlAction.DeleteLog) - Method in interface ome.util.SqlAction
Delete all SqlAction.DeleteLog entries which match all of the non-null fields provided in the template.
deleteRepoDeleteLogs(SqlAction.DeleteLog) - Method in class ome.util.SqlAction.Impl
 
DELETERESTRICTION - Static variable in class ome.model.internal.Permissions
 
deleteRows(PersistentCollection, Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister
 
deltaT - Variable in class ome.model.core.PlaneInfo
 
DELTAT - Static variable in class ome.model.core.PlaneInfo
 
description - Variable in class ome.model.annotations.Annotation
 
DESCRIPTION - Static variable in class ome.model.annotations.Annotation
 
description - Variable in class ome.model.containers.Dataset
 
DESCRIPTION - Static variable in class ome.model.containers.Dataset
 
description - Variable in class ome.model.containers.Folder
 
DESCRIPTION - Static variable in class ome.model.containers.Folder
 
description - Variable in class ome.model.containers.Project
 
DESCRIPTION - Static variable in class ome.model.containers.Project
 
description - Variable in class ome.model.core.Image
 
DESCRIPTION - Static variable in class ome.model.core.Image
 
description - Variable in class ome.model.experiment.Experiment
 
DESCRIPTION - Static variable in class ome.model.experiment.Experiment
 
description - Variable in class ome.model.experiment.MicrobeamManipulation
 
DESCRIPTION - Static variable in class ome.model.experiment.MicrobeamManipulation
 
description - Variable in class ome.model.jobs.ScriptJob
 
DESCRIPTION - Static variable in class ome.model.jobs.ScriptJob
 
description - Variable in class ome.model.meta.ExperimenterGroup
 
DESCRIPTION - Static variable in class ome.model.meta.ExperimenterGroup
 
description - Variable in class ome.model.meta.Namespace
 
DESCRIPTION - Static variable in class ome.model.meta.Namespace
 
description - Variable in class ome.model.roi.Roi
 
DESCRIPTION - Static variable in class ome.model.roi.Roi
 
description - Variable in class ome.model.screen.Plate
 
DESCRIPTION - Static variable in class ome.model.screen.Plate
 
description - Variable in class ome.model.screen.PlateAcquisition
 
DESCRIPTION - Static variable in class ome.model.screen.PlateAcquisition
 
description - Variable in class ome.model.screen.Reagent
 
DESCRIPTION - Static variable in class ome.model.screen.Reagent
 
description - Variable in class ome.model.screen.Screen
 
DESCRIPTION - Static variable in class ome.model.screen.Screen
 
details - Variable in class ome.model.acquisition.Detector
 
DETAILS - Static variable in class ome.model.acquisition.Detector
 
Details() - Constructor for class ome.model.acquisition.Detector.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Detector.Details
 
details - Variable in class ome.model.acquisition.DetectorSettings
 
DETAILS - Static variable in class ome.model.acquisition.DetectorSettings
 
Details() - Constructor for class ome.model.acquisition.DetectorSettings.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.DetectorSettings.Details
 
details - Variable in class ome.model.acquisition.Dichroic
 
DETAILS - Static variable in class ome.model.acquisition.Dichroic
 
Details() - Constructor for class ome.model.acquisition.Dichroic.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Dichroic.Details
 
details - Variable in class ome.model.acquisition.Filter
 
DETAILS - Static variable in class ome.model.acquisition.Filter
 
Details() - Constructor for class ome.model.acquisition.Filter.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Filter.Details
 
details - Variable in class ome.model.acquisition.FilterSet
 
DETAILS - Static variable in class ome.model.acquisition.FilterSet
 
Details() - Constructor for class ome.model.acquisition.FilterSet.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.FilterSet.Details
 
details - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
DETAILS - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
Details() - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
details - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
DETAILS - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
Details() - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
details - Variable in class ome.model.acquisition.ImagingEnvironment
 
DETAILS - Static variable in class ome.model.acquisition.ImagingEnvironment
 
Details() - Constructor for class ome.model.acquisition.ImagingEnvironment.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.ImagingEnvironment.Details
 
details - Variable in class ome.model.acquisition.Instrument
 
DETAILS - Static variable in class ome.model.acquisition.Instrument
 
Details() - Constructor for class ome.model.acquisition.Instrument.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Instrument.Details
 
details - Variable in class ome.model.acquisition.LightPath
 
DETAILS - Static variable in class ome.model.acquisition.LightPath
 
Details() - Constructor for class ome.model.acquisition.LightPath.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.LightPath.Details
 
details - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
DETAILS - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
Details() - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
details - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
DETAILS - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
Details() - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
details - Variable in class ome.model.acquisition.LightSettings
 
DETAILS - Static variable in class ome.model.acquisition.LightSettings
 
Details() - Constructor for class ome.model.acquisition.LightSettings.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.LightSettings.Details
 
details - Variable in class ome.model.acquisition.LightSource
 
DETAILS - Static variable in class ome.model.acquisition.LightSource
 
Details() - Constructor for class ome.model.acquisition.LightSource.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.LightSource.Details
 
details - Variable in class ome.model.acquisition.Microscope
 
DETAILS - Static variable in class ome.model.acquisition.Microscope
 
Details() - Constructor for class ome.model.acquisition.Microscope.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Microscope.Details
 
details - Variable in class ome.model.acquisition.Objective
 
DETAILS - Static variable in class ome.model.acquisition.Objective
 
Details() - Constructor for class ome.model.acquisition.Objective.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.Objective.Details
 
details - Variable in class ome.model.acquisition.ObjectiveSettings
 
DETAILS - Static variable in class ome.model.acquisition.ObjectiveSettings
 
Details() - Constructor for class ome.model.acquisition.ObjectiveSettings.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.ObjectiveSettings.Details
 
details - Variable in class ome.model.acquisition.OTF
 
DETAILS - Static variable in class ome.model.acquisition.OTF
 
Details() - Constructor for class ome.model.acquisition.OTF.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.OTF.Details
 
details - Variable in class ome.model.acquisition.StageLabel
 
DETAILS - Static variable in class ome.model.acquisition.StageLabel
 
Details() - Constructor for class ome.model.acquisition.StageLabel.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.StageLabel.Details
 
details - Variable in class ome.model.acquisition.TransmittanceRange
 
DETAILS - Static variable in class ome.model.acquisition.TransmittanceRange
 
Details() - Constructor for class ome.model.acquisition.TransmittanceRange.Details
 
Details(Object[]) - Constructor for class ome.model.acquisition.TransmittanceRange.Details
 
details - Variable in class ome.model.annotations.Annotation
 
DETAILS - Static variable in class ome.model.annotations.Annotation
 
Details() - Constructor for class ome.model.annotations.Annotation.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.Annotation.Details
 
details - Variable in class ome.model.annotations.AnnotationAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
Details() - Constructor for class ome.model.annotations.AnnotationAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.AnnotationAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ChannelAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ChannelAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ChannelAnnotationLink.Details
 
details - Variable in class ome.model.annotations.DatasetAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
Details() - Constructor for class ome.model.annotations.DatasetAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.DatasetAnnotationLink.Details
 
details - Variable in class ome.model.annotations.DetectorAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
Details() - Constructor for class ome.model.annotations.DetectorAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.DetectorAnnotationLink.Details
 
details - Variable in class ome.model.annotations.DichroicAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
Details() - Constructor for class ome.model.annotations.DichroicAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.DichroicAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ExperimenterAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ExperimenterAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
details - Variable in class ome.model.annotations.FilesetAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
Details() - Constructor for class ome.model.annotations.FilesetAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.FilesetAnnotationLink.Details
 
details - Variable in class ome.model.annotations.FilterAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.FilterAnnotationLink
 
Details() - Constructor for class ome.model.annotations.FilterAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.FilterAnnotationLink.Details
 
details - Variable in class ome.model.annotations.FolderAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.FolderAnnotationLink
 
Details() - Constructor for class ome.model.annotations.FolderAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.FolderAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ImageAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ImageAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ImageAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ImageAnnotationLink.Details
 
details - Variable in class ome.model.annotations.InstrumentAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
Details() - Constructor for class ome.model.annotations.InstrumentAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.InstrumentAnnotationLink.Details
 
details - Variable in class ome.model.annotations.LightPathAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
Details() - Constructor for class ome.model.annotations.LightPathAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.LightPathAnnotationLink.Details
 
details - Variable in class ome.model.annotations.LightSourceAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
Details() - Constructor for class ome.model.annotations.LightSourceAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.LightSourceAnnotationLink.Details
 
details - Variable in class ome.model.annotations.NamespaceAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
Details() - Constructor for class ome.model.annotations.NamespaceAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.NamespaceAnnotationLink.Details
 
details - Variable in class ome.model.annotations.NodeAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.NodeAnnotationLink
 
Details() - Constructor for class ome.model.annotations.NodeAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.NodeAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ObjectiveAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ObjectiveAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink.Details
 
details - Variable in class ome.model.annotations.OriginalFileAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
Details() - Constructor for class ome.model.annotations.OriginalFileAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink.Details
 
details - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
Details() - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
details - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
Details() - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
details - Variable in class ome.model.annotations.PlateAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.PlateAnnotationLink
 
Details() - Constructor for class ome.model.annotations.PlateAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.PlateAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ProjectAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ProjectAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ProjectAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ReagentAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ReagentAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ReagentAnnotationLink.Details
 
details - Variable in class ome.model.annotations.RoiAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.RoiAnnotationLink
 
Details() - Constructor for class ome.model.annotations.RoiAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.RoiAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ScreenAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ScreenAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ScreenAnnotationLink.Details
 
details - Variable in class ome.model.annotations.SessionAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.SessionAnnotationLink
 
Details() - Constructor for class ome.model.annotations.SessionAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.SessionAnnotationLink.Details
 
details - Variable in class ome.model.annotations.ShapeAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
Details() - Constructor for class ome.model.annotations.ShapeAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.ShapeAnnotationLink.Details
 
details - Variable in class ome.model.annotations.WellAnnotationLink
 
DETAILS - Static variable in class ome.model.annotations.WellAnnotationLink
 
Details() - Constructor for class ome.model.annotations.WellAnnotationLink.Details
 
Details(Object[]) - Constructor for class ome.model.annotations.WellAnnotationLink.Details
 
details - Variable in class ome.model.containers.Dataset
 
DETAILS - Static variable in class ome.model.containers.Dataset
 
Details() - Constructor for class ome.model.containers.Dataset.Details
 
Details(Object[]) - Constructor for class ome.model.containers.Dataset.Details
 
details - Variable in class ome.model.containers.DatasetImageLink
 
DETAILS - Static variable in class ome.model.containers.DatasetImageLink
 
Details() - Constructor for class ome.model.containers.DatasetImageLink.Details
 
Details(Object[]) - Constructor for class ome.model.containers.DatasetImageLink.Details
 
details - Variable in class ome.model.containers.Folder
 
DETAILS - Static variable in class ome.model.containers.Folder
 
Details() - Constructor for class ome.model.containers.Folder.Details
 
Details(Object[]) - Constructor for class ome.model.containers.Folder.Details
 
details - Variable in class ome.model.containers.FolderImageLink
 
DETAILS - Static variable in class ome.model.containers.FolderImageLink
 
Details() - Constructor for class ome.model.containers.FolderImageLink.Details
 
Details(Object[]) - Constructor for class ome.model.containers.FolderImageLink.Details
 
details - Variable in class ome.model.containers.FolderRoiLink
 
DETAILS - Static variable in class ome.model.containers.FolderRoiLink
 
Details() - Constructor for class ome.model.containers.FolderRoiLink.Details
 
Details(Object[]) - Constructor for class ome.model.containers.FolderRoiLink.Details
 
details - Variable in class ome.model.containers.Project
 
DETAILS - Static variable in class ome.model.containers.Project
 
Details() - Constructor for class ome.model.containers.Project.Details
 
Details(Object[]) - Constructor for class ome.model.containers.Project.Details
 
details - Variable in class ome.model.containers.ProjectDatasetLink
 
DETAILS - Static variable in class ome.model.containers.ProjectDatasetLink
 
Details() - Constructor for class ome.model.containers.ProjectDatasetLink.Details
 
Details(Object[]) - Constructor for class ome.model.containers.ProjectDatasetLink.Details
 
details - Variable in class ome.model.core.Channel
 
DETAILS - Static variable in class ome.model.core.Channel
 
Details() - Constructor for class ome.model.core.Channel.Details
 
Details(Object[]) - Constructor for class ome.model.core.Channel.Details
 
details - Variable in class ome.model.core.Image
 
DETAILS - Static variable in class ome.model.core.Image
 
Details() - Constructor for class ome.model.core.Image.Details
 
Details(Object[]) - Constructor for class ome.model.core.Image.Details
 
details - Variable in class ome.model.core.LogicalChannel
 
DETAILS - Static variable in class ome.model.core.LogicalChannel
 
Details() - Constructor for class ome.model.core.LogicalChannel.Details
 
Details(Object[]) - Constructor for class ome.model.core.LogicalChannel.Details
 
details - Variable in class ome.model.core.OriginalFile
 
DETAILS - Static variable in class ome.model.core.OriginalFile
 
Details() - Constructor for class ome.model.core.OriginalFile.Details
 
Details(Object[]) - Constructor for class ome.model.core.OriginalFile.Details
 
details - Variable in class ome.model.core.Pixels
 
DETAILS - Static variable in class ome.model.core.Pixels
 
Details() - Constructor for class ome.model.core.Pixels.Details
 
Details(Object[]) - Constructor for class ome.model.core.Pixels.Details
 
details - Variable in class ome.model.core.PixelsOriginalFileMap
 
DETAILS - Static variable in class ome.model.core.PixelsOriginalFileMap
 
Details() - Constructor for class ome.model.core.PixelsOriginalFileMap.Details
 
Details(Object[]) - Constructor for class ome.model.core.PixelsOriginalFileMap.Details
 
details - Variable in class ome.model.core.PlaneInfo
 
DETAILS - Static variable in class ome.model.core.PlaneInfo
 
Details() - Constructor for class ome.model.core.PlaneInfo.Details
 
Details(Object[]) - Constructor for class ome.model.core.PlaneInfo.Details
 
details - Variable in class ome.model.display.ChannelBinding
 
DETAILS - Static variable in class ome.model.display.ChannelBinding
 
Details() - Constructor for class ome.model.display.ChannelBinding.Details
 
Details(Object[]) - Constructor for class ome.model.display.ChannelBinding.Details
 
details - Variable in class ome.model.display.CodomainMapContext
 
DETAILS - Static variable in class ome.model.display.CodomainMapContext
 
Details() - Constructor for class ome.model.display.CodomainMapContext.Details
 
Details(Object[]) - Constructor for class ome.model.display.CodomainMapContext.Details
 
details - Variable in class ome.model.display.ProjectionDef
 
DETAILS - Static variable in class ome.model.display.ProjectionDef
 
Details() - Constructor for class ome.model.display.ProjectionDef.Details
 
Details(Object[]) - Constructor for class ome.model.display.ProjectionDef.Details
 
details - Variable in class ome.model.display.QuantumDef
 
DETAILS - Static variable in class ome.model.display.QuantumDef
 
Details() - Constructor for class ome.model.display.QuantumDef.Details
 
Details(Object[]) - Constructor for class ome.model.display.QuantumDef.Details
 
details - Variable in class ome.model.display.RenderingDef
 
DETAILS - Static variable in class ome.model.display.RenderingDef
 
Details() - Constructor for class ome.model.display.RenderingDef.Details
 
Details(Object[]) - Constructor for class ome.model.display.RenderingDef.Details
 
details - Variable in class ome.model.display.Thumbnail
 
DETAILS - Static variable in class ome.model.display.Thumbnail
 
Details() - Constructor for class ome.model.display.Thumbnail.Details
 
Details(Object[]) - Constructor for class ome.model.display.Thumbnail.Details
 
details - Variable in class ome.model.enums.AcquisitionMode
 
DETAILS - Static variable in class ome.model.enums.AcquisitionMode
 
Details() - Constructor for class ome.model.enums.AcquisitionMode.Details
 
Details(Object[]) - Constructor for class ome.model.enums.AcquisitionMode.Details
 
details - Variable in class ome.model.enums.AdminPrivilege
 
DETAILS - Static variable in class ome.model.enums.AdminPrivilege
 
Details() - Constructor for class ome.model.enums.AdminPrivilege.Details
 
Details(Object[]) - Constructor for class ome.model.enums.AdminPrivilege.Details
 
details - Variable in class ome.model.enums.ArcType
 
DETAILS - Static variable in class ome.model.enums.ArcType
 
Details() - Constructor for class ome.model.enums.ArcType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ArcType.Details
 
details - Variable in class ome.model.enums.Binning
 
DETAILS - Static variable in class ome.model.enums.Binning
 
Details() - Constructor for class ome.model.enums.Binning.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Binning.Details
 
details - Variable in class ome.model.enums.ChecksumAlgorithm
 
DETAILS - Static variable in class ome.model.enums.ChecksumAlgorithm
 
Details() - Constructor for class ome.model.enums.ChecksumAlgorithm.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ChecksumAlgorithm.Details
 
details - Variable in class ome.model.enums.ContrastMethod
 
DETAILS - Static variable in class ome.model.enums.ContrastMethod
 
Details() - Constructor for class ome.model.enums.ContrastMethod.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ContrastMethod.Details
 
details - Variable in class ome.model.enums.Correction
 
DETAILS - Static variable in class ome.model.enums.Correction
 
Details() - Constructor for class ome.model.enums.Correction.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Correction.Details
 
details - Variable in class ome.model.enums.DetectorType
 
DETAILS - Static variable in class ome.model.enums.DetectorType
 
Details() - Constructor for class ome.model.enums.DetectorType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.DetectorType.Details
 
details - Variable in class ome.model.enums.DimensionOrder
 
DETAILS - Static variable in class ome.model.enums.DimensionOrder
 
Details() - Constructor for class ome.model.enums.DimensionOrder.Details
 
Details(Object[]) - Constructor for class ome.model.enums.DimensionOrder.Details
 
details - Variable in class ome.model.enums.EventType
 
DETAILS - Static variable in class ome.model.enums.EventType
 
Details() - Constructor for class ome.model.enums.EventType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.EventType.Details
 
details - Variable in class ome.model.enums.ExperimentType
 
DETAILS - Static variable in class ome.model.enums.ExperimentType
 
Details() - Constructor for class ome.model.enums.ExperimentType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ExperimentType.Details
 
details - Variable in class ome.model.enums.Family
 
DETAILS - Static variable in class ome.model.enums.Family
 
Details() - Constructor for class ome.model.enums.Family.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Family.Details
 
details - Variable in class ome.model.enums.FilamentType
 
DETAILS - Static variable in class ome.model.enums.FilamentType
 
Details() - Constructor for class ome.model.enums.FilamentType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.FilamentType.Details
 
details - Variable in class ome.model.enums.FilterType
 
DETAILS - Static variable in class ome.model.enums.FilterType
 
Details() - Constructor for class ome.model.enums.FilterType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.FilterType.Details
 
details - Variable in class ome.model.enums.Format
 
DETAILS - Static variable in class ome.model.enums.Format
 
Details() - Constructor for class ome.model.enums.Format.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Format.Details
 
details - Variable in class ome.model.enums.Illumination
 
DETAILS - Static variable in class ome.model.enums.Illumination
 
Details() - Constructor for class ome.model.enums.Illumination.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Illumination.Details
 
details - Variable in class ome.model.enums.Immersion
 
DETAILS - Static variable in class ome.model.enums.Immersion
 
Details() - Constructor for class ome.model.enums.Immersion.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Immersion.Details
 
details - Variable in class ome.model.enums.LaserMedium
 
DETAILS - Static variable in class ome.model.enums.LaserMedium
 
Details() - Constructor for class ome.model.enums.LaserMedium.Details
 
Details(Object[]) - Constructor for class ome.model.enums.LaserMedium.Details
 
details - Variable in class ome.model.enums.LaserType
 
DETAILS - Static variable in class ome.model.enums.LaserType
 
Details() - Constructor for class ome.model.enums.LaserType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.LaserType.Details
 
details - Variable in class ome.model.enums.Medium
 
DETAILS - Static variable in class ome.model.enums.Medium
 
Details() - Constructor for class ome.model.enums.Medium.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Medium.Details
 
details - Variable in class ome.model.enums.MicrobeamManipulationType
 
DETAILS - Static variable in class ome.model.enums.MicrobeamManipulationType
 
Details() - Constructor for class ome.model.enums.MicrobeamManipulationType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.MicrobeamManipulationType.Details
 
details - Variable in class ome.model.enums.MicroscopeType
 
DETAILS - Static variable in class ome.model.enums.MicroscopeType
 
Details() - Constructor for class ome.model.enums.MicroscopeType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.MicroscopeType.Details
 
details - Variable in class ome.model.enums.PhotometricInterpretation
 
DETAILS - Static variable in class ome.model.enums.PhotometricInterpretation
 
Details() - Constructor for class ome.model.enums.PhotometricInterpretation.Details
 
Details(Object[]) - Constructor for class ome.model.enums.PhotometricInterpretation.Details
 
details - Variable in class ome.model.enums.PixelsType
 
DETAILS - Static variable in class ome.model.enums.PixelsType
 
Details() - Constructor for class ome.model.enums.PixelsType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.PixelsType.Details
 
details - Variable in class ome.model.enums.ProjectionAxis
 
DETAILS - Static variable in class ome.model.enums.ProjectionAxis
 
Details() - Constructor for class ome.model.enums.ProjectionAxis.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ProjectionAxis.Details
 
details - Variable in class ome.model.enums.ProjectionType
 
DETAILS - Static variable in class ome.model.enums.ProjectionType
 
Details() - Constructor for class ome.model.enums.ProjectionType.Details
 
Details(Object[]) - Constructor for class ome.model.enums.ProjectionType.Details
 
details - Variable in class ome.model.enums.Pulse
 
DETAILS - Static variable in class ome.model.enums.Pulse
 
Details() - Constructor for class ome.model.enums.Pulse.Details
 
Details(Object[]) - Constructor for class ome.model.enums.Pulse.Details
 
details - Variable in class ome.model.enums.RenderingModel
 
DETAILS - Static variable in class ome.model.enums.RenderingModel
 
Details() - Constructor for class ome.model.enums.RenderingModel.Details
 
Details(Object[]) - Constructor for class ome.model.enums.RenderingModel.Details
 
details - Variable in class ome.model.experiment.Experiment
 
DETAILS - Static variable in class ome.model.experiment.Experiment
 
Details() - Constructor for class ome.model.experiment.Experiment.Details
 
Details(Object[]) - Constructor for class ome.model.experiment.Experiment.Details
 
details - Variable in class ome.model.experiment.MicrobeamManipulation
 
DETAILS - Static variable in class ome.model.experiment.MicrobeamManipulation
 
Details() - Constructor for class ome.model.experiment.MicrobeamManipulation.Details
 
Details(Object[]) - Constructor for class ome.model.experiment.MicrobeamManipulation.Details
 
details - Variable in class ome.model.fs.Fileset
 
DETAILS - Static variable in class ome.model.fs.Fileset
 
Details() - Constructor for class ome.model.fs.Fileset.Details
 
Details(Object[]) - Constructor for class ome.model.fs.Fileset.Details
 
details - Variable in class ome.model.fs.FilesetEntry
 
DETAILS - Static variable in class ome.model.fs.FilesetEntry
 
Details() - Constructor for class ome.model.fs.FilesetEntry.Details
 
Details(Object[]) - Constructor for class ome.model.fs.FilesetEntry.Details
 
details - Variable in class ome.model.fs.FilesetJobLink
 
DETAILS - Static variable in class ome.model.fs.FilesetJobLink
 
Details() - Constructor for class ome.model.fs.FilesetJobLink.Details
 
Details(Object[]) - Constructor for class ome.model.fs.FilesetJobLink.Details
 
Details - Class in ome.model.internal
value type for low-level (row-level) details for all IObject objects.
Details() - Constructor for class ome.model.internal.Details
default constructor.
Details(Object[]) - Constructor for class ome.model.internal.Details
 
Details(Details) - Constructor for class ome.model.internal.Details
copy-constructor
details - Variable in class ome.model.internal.Link
 
DETAILS - Static variable in class ome.model.internal.Link
 
Details() - Constructor for class ome.model.internal.Link.Details
 
Details(Object[]) - Constructor for class ome.model.internal.Link.Details
 
details - Variable in class ome.model.jobs.Job
 
DETAILS - Static variable in class ome.model.jobs.Job
 
Details() - Constructor for class ome.model.jobs.Job.Details
 
Details(Object[]) - Constructor for class ome.model.jobs.Job.Details
 
details - Variable in class ome.model.jobs.JobOriginalFileLink
 
DETAILS - Static variable in class ome.model.jobs.JobOriginalFileLink
 
Details() - Constructor for class ome.model.jobs.JobOriginalFileLink.Details
 
Details(Object[]) - Constructor for class ome.model.jobs.JobOriginalFileLink.Details
 
details - Variable in class ome.model.jobs.JobStatus
 
DETAILS - Static variable in class ome.model.jobs.JobStatus
 
Details() - Constructor for class ome.model.jobs.JobStatus.Details
 
Details(Object[]) - Constructor for class ome.model.jobs.JobStatus.Details
 
details - Variable in class ome.model.meta.DBPatch
 
DETAILS - Static variable in class ome.model.meta.DBPatch
 
Details() - Constructor for class ome.model.meta.DBPatch.Details
 
Details(Object[]) - Constructor for class ome.model.meta.DBPatch.Details
 
details - Variable in class ome.model.meta.Event
 
DETAILS - Static variable in class ome.model.meta.Event
 
Details() - Constructor for class ome.model.meta.Event.Details
 
Details(Object[]) - Constructor for class ome.model.meta.Event.Details
 
details - Variable in class ome.model.meta.EventLog
 
DETAILS - Static variable in class ome.model.meta.EventLog
 
Details() - Constructor for class ome.model.meta.EventLog.Details
 
Details(Object[]) - Constructor for class ome.model.meta.EventLog.Details
 
details - Variable in class ome.model.meta.Experimenter
 
DETAILS - Static variable in class ome.model.meta.Experimenter
 
Details() - Constructor for class ome.model.meta.Experimenter.Details
 
Details(Object[]) - Constructor for class ome.model.meta.Experimenter.Details
 
details - Variable in class ome.model.meta.ExperimenterGroup
 
DETAILS - Static variable in class ome.model.meta.ExperimenterGroup
 
Details() - Constructor for class ome.model.meta.ExperimenterGroup.Details
 
Details(Object[]) - Constructor for class ome.model.meta.ExperimenterGroup.Details
 
details - Variable in class ome.model.meta.ExternalInfo
 
DETAILS - Static variable in class ome.model.meta.ExternalInfo
 
Details() - Constructor for class ome.model.meta.ExternalInfo.Details
 
Details(Object[]) - Constructor for class ome.model.meta.ExternalInfo.Details
 
details - Variable in class ome.model.meta.GroupExperimenterMap
 
DETAILS - Static variable in class ome.model.meta.GroupExperimenterMap
 
Details() - Constructor for class ome.model.meta.GroupExperimenterMap.Details
 
Details(Object[]) - Constructor for class ome.model.meta.GroupExperimenterMap.Details
 
details - Variable in class ome.model.meta.Namespace
 
DETAILS - Static variable in class ome.model.meta.Namespace
 
Details() - Constructor for class ome.model.meta.Namespace.Details
 
Details(Object[]) - Constructor for class ome.model.meta.Namespace.Details
 
details - Variable in class ome.model.meta.Node
 
DETAILS - Static variable in class ome.model.meta.Node
 
Details() - Constructor for class ome.model.meta.Node.Details
 
Details(Object[]) - Constructor for class ome.model.meta.Node.Details
 
details - Variable in class ome.model.meta.Session
 
DETAILS - Static variable in class ome.model.meta.Session
 
Details() - Constructor for class ome.model.meta.Session.Details
 
Details(Object[]) - Constructor for class ome.model.meta.Session.Details
 
details - Variable in class ome.model.meta.ShareMember
 
DETAILS - Static variable in class ome.model.meta.ShareMember
 
Details() - Constructor for class ome.model.meta.ShareMember.Details
 
Details(Object[]) - Constructor for class ome.model.meta.ShareMember.Details
 
details - Variable in class ome.model.roi.AffineTransform
 
DETAILS - Static variable in class ome.model.roi.AffineTransform
 
Details() - Constructor for class ome.model.roi.AffineTransform.Details
 
Details(Object[]) - Constructor for class ome.model.roi.AffineTransform.Details
 
details - Variable in class ome.model.roi.Roi
 
DETAILS - Static variable in class ome.model.roi.Roi
 
Details() - Constructor for class ome.model.roi.Roi.Details
 
Details(Object[]) - Constructor for class ome.model.roi.Roi.Details
 
details - Variable in class ome.model.roi.Shape
 
DETAILS - Static variable in class ome.model.roi.Shape
 
Details() - Constructor for class ome.model.roi.Shape.Details
 
Details(Object[]) - Constructor for class ome.model.roi.Shape.Details
 
details - Variable in class ome.model.screen.Plate
 
DETAILS - Static variable in class ome.model.screen.Plate
 
Details() - Constructor for class ome.model.screen.Plate.Details
 
Details(Object[]) - Constructor for class ome.model.screen.Plate.Details
 
details - Variable in class ome.model.screen.PlateAcquisition
 
DETAILS - Static variable in class ome.model.screen.PlateAcquisition
 
Details() - Constructor for class ome.model.screen.PlateAcquisition.Details
 
Details(Object[]) - Constructor for class ome.model.screen.PlateAcquisition.Details
 
details - Variable in class ome.model.screen.Reagent
 
DETAILS - Static variable in class ome.model.screen.Reagent
 
Details() - Constructor for class ome.model.screen.Reagent.Details
 
Details(Object[]) - Constructor for class ome.model.screen.Reagent.Details
 
details - Variable in class ome.model.screen.Screen
 
DETAILS - Static variable in class ome.model.screen.Screen
 
Details() - Constructor for class ome.model.screen.Screen.Details
 
Details(Object[]) - Constructor for class ome.model.screen.Screen.Details
 
details - Variable in class ome.model.screen.ScreenPlateLink
 
DETAILS - Static variable in class ome.model.screen.ScreenPlateLink
 
Details() - Constructor for class ome.model.screen.ScreenPlateLink.Details
 
Details(Object[]) - Constructor for class ome.model.screen.ScreenPlateLink.Details
 
details - Variable in class ome.model.screen.Well
 
DETAILS - Static variable in class ome.model.screen.Well
 
Details() - Constructor for class ome.model.screen.Well.Details
 
Details(Object[]) - Constructor for class ome.model.screen.Well.Details
 
details - Variable in class ome.model.screen.WellReagentLink
 
DETAILS - Static variable in class ome.model.screen.WellReagentLink
 
Details() - Constructor for class ome.model.screen.WellReagentLink.Details
 
Details(Object[]) - Constructor for class ome.model.screen.WellReagentLink.Details
 
details - Variable in class ome.model.screen.WellSample
 
DETAILS - Static variable in class ome.model.screen.WellSample
 
Details() - Constructor for class ome.model.screen.WellSample.Details
 
Details(Object[]) - Constructor for class ome.model.screen.WellSample.Details
 
details - Variable in class ome.model.stats.StatsInfo
 
DETAILS - Static variable in class ome.model.stats.StatsInfo
 
Details() - Constructor for class ome.model.stats.StatsInfo.Details
 
Details(Object[]) - Constructor for class ome.model.stats.StatsInfo.Details
 
DetailsFieldBridge - Class in ome.util
Delegating FieldBridge which passes the "fieldBridge" bean from the "ome.model" Spring ApplicationContext all arguments.
DetailsFieldBridge() - Constructor for class ome.util.DetailsFieldBridge
 
Detector - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Detector() - Constructor for class ome.model.acquisition.Detector
 
Detector(Long) - Constructor for class ome.model.acquisition.Detector
 
Detector(Long, boolean) - Constructor for class ome.model.acquisition.Detector
Main constructor.
Detector(DetectorType, Instrument) - Constructor for class ome.model.acquisition.Detector
 
detector - Variable in class ome.model.acquisition.DetectorSettings
 
DETECTOR - Static variable in class ome.model.acquisition.DetectorSettings
 
detector - Variable in class ome.model.acquisition.Instrument
 
DETECTOR - Static variable in class ome.model.acquisition.Instrument
 
Detector.Details - Class in ome.model.acquisition
 
DetectorAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
DetectorAnnotationLink() - Constructor for class ome.model.annotations.DetectorAnnotationLink
 
DetectorAnnotationLink(Long) - Constructor for class ome.model.annotations.DetectorAnnotationLink
 
DetectorAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DetectorAnnotationLink
Main constructor.
DetectorAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DetectorAnnotationLink
 
DetectorAnnotationLink.Details - Class in ome.model.annotations
 
DetectorSettings - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
DetectorSettings() - Constructor for class ome.model.acquisition.DetectorSettings
 
DetectorSettings(Long) - Constructor for class ome.model.acquisition.DetectorSettings
 
DetectorSettings(Long, boolean) - Constructor for class ome.model.acquisition.DetectorSettings
Main constructor.
DetectorSettings(Detector) - Constructor for class ome.model.acquisition.DetectorSettings
 
detectorSettings - Variable in class ome.model.core.LogicalChannel
 
DETECTORSETTINGS - Static variable in class ome.model.core.LogicalChannel
 
DetectorSettings.Details - Class in ome.model.acquisition
 
DetectorType - Class in ome.model.enums
 
DetectorType() - Constructor for class ome.model.enums.DetectorType
 
DetectorType(Long) - Constructor for class ome.model.enums.DetectorType
 
DetectorType(Long, boolean) - Constructor for class ome.model.enums.DetectorType
Main constructor.
DetectorType(String) - Constructor for class ome.model.enums.DetectorType
 
DetectorType.Details - Class in ome.model.enums
 
Dichroic - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Dichroic() - Constructor for class ome.model.acquisition.Dichroic
 
Dichroic(Long) - Constructor for class ome.model.acquisition.Dichroic
 
Dichroic(Long, boolean) - Constructor for class ome.model.acquisition.Dichroic
Main constructor.
Dichroic(Instrument) - Constructor for class ome.model.acquisition.Dichroic
 
dichroic - Variable in class ome.model.acquisition.FilterSet
 
DICHROIC - Static variable in class ome.model.acquisition.FilterSet
 
dichroic - Variable in class ome.model.acquisition.Instrument
 
DICHROIC - Static variable in class ome.model.acquisition.Instrument
 
dichroic - Variable in class ome.model.acquisition.LightPath
 
DICHROIC - Static variable in class ome.model.acquisition.LightPath
 
Dichroic.Details - Class in ome.model.acquisition
 
DichroicAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
DichroicAnnotationLink() - Constructor for class ome.model.annotations.DichroicAnnotationLink
 
DichroicAnnotationLink(Long) - Constructor for class ome.model.annotations.DichroicAnnotationLink
 
DichroicAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.DichroicAnnotationLink
Main constructor.
DichroicAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.DichroicAnnotationLink
 
DichroicAnnotationLink.Details - Class in ome.model.annotations
 
dimensionOrder - Variable in class ome.model.core.Pixels
 
DIMENSIONORDER - Static variable in class ome.model.core.Pixels
 
DimensionOrder - Class in ome.model.enums
 
DimensionOrder() - Constructor for class ome.model.enums.DimensionOrder
 
DimensionOrder(Long) - Constructor for class ome.model.enums.DimensionOrder
 
DimensionOrder(Long, boolean) - Constructor for class ome.model.enums.DimensionOrder
Main constructor.
DimensionOrder(String) - Constructor for class ome.model.enums.DimensionOrder
 
DimensionOrder.Details - Class in ome.model.enums
 
disassemble(Object) - Method in class ome.model.units.GenericEnumType
 
display - Variable in class ome.model.meta.Namespace
 
DISPLAY - Static variable in class ome.model.meta.Namespace
 
displayName - Variable in class ome.model.meta.Namespace
 
DISPLAYNAME - Static variable in class ome.model.meta.Namespace
 
dispose() - Method in class ome.util.PixelData
Attempt to free up any native memory resources associated with the data buffer.
doFilter(String, Object) - Method in class ome.util.ContextFilter
 
doFilter(String, Filterable) - Method in class ome.util.ContextFilter
 
doFilter(String, Collection) - Method in class ome.util.ContextFilter
 
DOUBLE - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
DoubleAnnotation - Class in ome.model.annotations
 
DoubleAnnotation() - Constructor for class ome.model.annotations.DoubleAnnotation
 
DoubleAnnotation(Long) - Constructor for class ome.model.annotations.DoubleAnnotation
 
DoubleAnnotation(Long, boolean) - Constructor for class ome.model.annotations.DoubleAnnotation
Main constructor.
doubleValue - Variable in class ome.model.annotations.DoubleAnnotation
 
DOUBLEVALUE - Static variable in class ome.model.annotations.DoubleAnnotation
 
doUpdateRows(Serializable, PersistentCollection, SessionImplementor) - Method in class ome.util.CountCollectionPersister
 
down - Variable in class ome.model.meta.Node
 
DOWN - Static variable in class ome.model.meta.Node
 
DUMMY - Static variable in class ome.model.internal.Permissions
Marker object which can be set on objects to show that the Permissions instance given contains no value.

E

eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Detector
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Dichroic
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Instrument
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.LightSource
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.acquisition.Objective
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.annotations.Annotation
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.containers.Project
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.Channel
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.OriginalFile
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.core.PlaneInfo
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in interface ome.model.IAnnotated
 
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Experimenter
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Namespace
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Node
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.meta.Session
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.roi.Roi
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.roi.Shape
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.PlateAcquisition
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Reagent
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Screen
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedAnnotation(CBlock<E>) - Method in class ome.model.screen.Well
takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
eachLinkedDataset(CBlock<E>) - Method in class ome.model.containers.Project
takes a CBlock and calls the block once for each ome.model.containers.Dataset while collecting the results.
eachLinkedDataset(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.containers.Dataset while collecting the results.
eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.
eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedEmissionFilter(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.Filter
takes a CBlock and calls the block once for each ome.model.acquisition.FilterSet while collecting the results.
eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.FilterSet
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedExcitationFilter(CBlock<E>) - Method in class ome.model.acquisition.LightPath
takes a CBlock and calls the block once for each ome.model.acquisition.Filter while collecting the results.
eachLinkedExperimenter(CBlock<E>) - Method in class ome.model.meta.ExperimenterGroup
takes a CBlock and calls the block once for each ome.model.meta.Experimenter while collecting the results.
eachLinkedExperimenterGroup(CBlock<E>) - Method in class ome.model.meta.Experimenter
takes a CBlock and calls the block once for each ome.model.meta.ExperimenterGroup while collecting the results.
eachLinkedFolder(CBlock<E>) - Method in class ome.model.core.Image
takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.
eachLinkedFolder(CBlock<E>) - Method in class ome.model.roi.Roi
takes a CBlock and calls the block once for each ome.model.containers.Folder while collecting the results.
eachLinkedImage(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.
eachLinkedImage(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.
eachLinkedJob(CBlock<E>) - Method in class ome.model.fs.Fileset
takes a CBlock and calls the block once for each ome.model.jobs.Job while collecting the results.
eachLinkedOriginalFile(CBlock<E>) - Method in class ome.model.core.Pixels
takes a CBlock and calls the block once for each ome.model.core.OriginalFile while collecting the results.
eachLinkedOriginalFile(CBlock<E>) - Method in class ome.model.jobs.Job
takes a CBlock and calls the block once for each ome.model.core.OriginalFile while collecting the results.
eachLinkedPixels(CBlock<E>) - Method in class ome.model.core.OriginalFile
takes a CBlock and calls the block once for each ome.model.core.Pixels while collecting the results.
eachLinkedPlate(CBlock<E>) - Method in class ome.model.screen.Screen
takes a CBlock and calls the block once for each ome.model.screen.Plate while collecting the results.
eachLinkedProject(CBlock<E>) - Method in class ome.model.containers.Dataset
takes a CBlock and calls the block once for each ome.model.containers.Project while collecting the results.
eachLinkedReagent(CBlock<E>) - Method in class ome.model.screen.Well
takes a CBlock and calls the block once for each ome.model.screen.Reagent while collecting the results.
eachLinkedRoi(CBlock<E>) - Method in class ome.model.containers.Folder
takes a CBlock and calls the block once for each ome.model.roi.Roi while collecting the results.
eachLinkedScreen(CBlock<E>) - Method in class ome.model.screen.Plate
takes a CBlock and calls the block once for each ome.model.screen.Screen while collecting the results.
eachLinkedWell(CBlock<E>) - Method in class ome.model.screen.Reagent
takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.
EDITRESTRICTION - Static variable in class ome.model.internal.Permissions
 
ElectricPotential - Class in ome.model.units
class storing both a ElectricPotential and a unit for that ElectricPotential (e.g.
ElectricPotential() - Constructor for class ome.model.units.ElectricPotential
Deprecated.
ElectricPotential(double, String) - Constructor for class ome.model.units.ElectricPotential
 
ElectricPotential(double, UnitsElectricPotential) - Constructor for class ome.model.units.ElectricPotential
 
ElectricPotential(double, Unit<ElectricPotential>) - Constructor for class ome.model.units.ElectricPotential
 
ElectricPotential(ElectricPotential) - Constructor for class ome.model.units.ElectricPotential
 
Ellipse - Class in ome.model.roi
 
Ellipse() - Constructor for class ome.model.roi.Ellipse
 
Ellipse(Long) - Constructor for class ome.model.roi.Ellipse
 
Ellipse(Long, boolean) - Constructor for class ome.model.roi.Ellipse
Main constructor.
email - Variable in class ome.model.meta.Experimenter
 
EMAIL - Static variable in class ome.model.meta.Experimenter
 
emissionFilterLink - Variable in class ome.model.acquisition.Filter
 
EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
emissionFilterLink - Variable in class ome.model.acquisition.FilterSet
 
EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
emissionFilterLink - Variable in class ome.model.acquisition.LightPath
 
EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
 
EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.FilterSet
 
EMISSIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
 
emissionWave - Variable in class ome.model.core.LogicalChannel
 
EMISSIONWAVE - Static variable in class ome.model.core.LogicalChannel
 
EMPTY - Static variable in class ome.model.internal.Permissions
an immutable Permissions instance with all rights turned off.
EmptyIterator<E> - Class in ome.util
utility iterator which does nothing as quickly as possible.
EmptyIterator() - Constructor for class ome.util.EmptyIterator
 
endPlane - Variable in class ome.model.display.ProjectionDef
 
ENDPLANE - Static variable in class ome.model.display.ProjectionDef
 
endTime - Variable in class ome.model.screen.PlateAcquisition
 
ENDTIME - Static variable in class ome.model.screen.PlateAcquisition
 
endTime - Variable in class ome.parameters.Filter
 
endTime(Timestamp) - Method in class ome.parameters.Parameters
 
enter(Object) - Method in class ome.util.ContextFilter
 
entityId - Variable in class ome.model.meta.EventLog
 
ENTITYID - Static variable in class ome.model.meta.EventLog
 
entityId - Variable in class ome.model.meta.ExternalInfo
 
ENTITYID - Static variable in class ome.model.meta.ExternalInfo
 
entityType - Variable in class ome.model.meta.EventLog
 
ENTITYTYPE - Static variable in class ome.model.meta.EventLog
 
entityType - Variable in class ome.model.meta.ExternalInfo
 
ENTITYTYPE - Static variable in class ome.model.meta.ExternalInfo
 
entry(String, Object) - Method in class ome.util.RdfPrinter
 
equals(Object) - Method in class ome.model.enums.AcquisitionMode
 
equals(Object) - Method in class ome.model.enums.AdminPrivilege
 
equals(Object) - Method in class ome.model.enums.ArcType
 
equals(Object) - Method in class ome.model.enums.Binning
 
equals(Object) - Method in class ome.model.enums.ChecksumAlgorithm
 
equals(Object) - Method in class ome.model.enums.ContrastMethod
 
equals(Object) - Method in class ome.model.enums.Correction
 
equals(Object) - Method in class ome.model.enums.DetectorType
 
equals(Object) - Method in class ome.model.enums.DimensionOrder
 
equals(Object) - Method in class ome.model.enums.EventType
 
equals(Object) - Method in class ome.model.enums.ExperimentType
 
equals(Object) - Method in class ome.model.enums.Family
 
equals(Object) - Method in class ome.model.enums.FilamentType
 
equals(Object) - Method in class ome.model.enums.FilterType
 
equals(Object) - Method in class ome.model.enums.Format
 
equals(Object) - Method in class ome.model.enums.Illumination
 
equals(Object) - Method in class ome.model.enums.Immersion
 
equals(Object) - Method in class ome.model.enums.LaserMedium
 
equals(Object) - Method in class ome.model.enums.LaserType
 
equals(Object) - Method in class ome.model.enums.Medium
 
equals(Object) - Method in class ome.model.enums.MicrobeamManipulationType
 
equals(Object) - Method in class ome.model.enums.MicroscopeType
 
equals(Object) - Method in class ome.model.enums.PhotometricInterpretation
 
equals(Object) - Method in class ome.model.enums.PixelsType
 
equals(Object) - Method in class ome.model.enums.ProjectionAxis
 
equals(Object) - Method in class ome.model.enums.ProjectionType
 
equals(Object) - Method in class ome.model.enums.Pulse
 
equals(Object) - Method in class ome.model.enums.RenderingModel
 
equals(Object) - Method in class ome.model.internal.NamedValue
 
equals(Object) - Method in class ome.model.jobs.JobStatus
 
equals(Object) - Method in class ome.model.units.ElectricPotential
 
equals(Object) - Method in class ome.model.units.Frequency
 
equals(Object, Object) - Method in class ome.model.units.GenericEnumType
 
equals(Object) - Method in class ome.model.units.Length
 
equals(Object) - Method in class ome.model.units.Power
 
equals(Object) - Method in class ome.model.units.Pressure
 
equals(Object) - Method in class ome.model.units.Temperature
 
equals(Object) - Method in class ome.model.units.Time
 
equals(Object) - Method in class ome.parameters.QueryParameter
 
equals(Object) - Method in class ome.util.LSID
 
errorIfUnloaded() - Method in class ome.model.acquisition.Detector
 
errorIfUnloaded() - Method in class ome.model.acquisition.DetectorSettings
 
errorIfUnloaded() - Method in class ome.model.acquisition.Dichroic
 
errorIfUnloaded() - Method in class ome.model.acquisition.Filter
 
errorIfUnloaded() - Method in class ome.model.acquisition.FilterSet
 
errorIfUnloaded() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
errorIfUnloaded() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
errorIfUnloaded() - Method in class ome.model.acquisition.ImagingEnvironment
 
errorIfUnloaded() - Method in class ome.model.acquisition.Instrument
 
errorIfUnloaded() - Method in class ome.model.acquisition.LightPath
 
errorIfUnloaded() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
errorIfUnloaded() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
errorIfUnloaded() - Method in class ome.model.acquisition.LightSettings
 
errorIfUnloaded() - Method in class ome.model.acquisition.LightSource
 
errorIfUnloaded() - Method in class ome.model.acquisition.Microscope
 
errorIfUnloaded() - Method in class ome.model.acquisition.Objective
 
errorIfUnloaded() - Method in class ome.model.acquisition.ObjectiveSettings
 
errorIfUnloaded() - Method in class ome.model.acquisition.OTF
 
errorIfUnloaded() - Method in class ome.model.acquisition.StageLabel
 
errorIfUnloaded() - Method in class ome.model.acquisition.TransmittanceRange
 
errorIfUnloaded() - Method in class ome.model.annotations.Annotation
 
errorIfUnloaded() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ChannelAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.DatasetAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.DetectorAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.DichroicAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.FilesetAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.FilterAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.FolderAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ImageAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.LightPathAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.NodeAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.PlateAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ProjectAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ReagentAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.RoiAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ScreenAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.SessionAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.ShapeAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.annotations.WellAnnotationLink
 
errorIfUnloaded() - Method in class ome.model.containers.Dataset
 
errorIfUnloaded() - Method in class ome.model.containers.DatasetImageLink
 
errorIfUnloaded() - Method in class ome.model.containers.Folder
 
errorIfUnloaded() - Method in class ome.model.containers.FolderImageLink
 
errorIfUnloaded() - Method in class ome.model.containers.FolderRoiLink
 
errorIfUnloaded() - Method in class ome.model.containers.Project
 
errorIfUnloaded() - Method in class ome.model.containers.ProjectDatasetLink
 
errorIfUnloaded() - Method in class ome.model.core.Channel
 
errorIfUnloaded() - Method in class ome.model.core.Image
 
errorIfUnloaded() - Method in class ome.model.core.LogicalChannel
 
errorIfUnloaded() - Method in class ome.model.core.OriginalFile
 
errorIfUnloaded() - Method in class ome.model.core.Pixels
 
errorIfUnloaded() - Method in class ome.model.core.PixelsOriginalFileMap
 
errorIfUnloaded() - Method in class ome.model.core.PlaneInfo
 
errorIfUnloaded() - Method in class ome.model.display.ChannelBinding
 
errorIfUnloaded() - Method in class ome.model.display.CodomainMapContext
 
errorIfUnloaded() - Method in class ome.model.display.ProjectionDef
 
errorIfUnloaded() - Method in class ome.model.display.QuantumDef
 
errorIfUnloaded() - Method in class ome.model.display.RenderingDef
 
errorIfUnloaded() - Method in class ome.model.display.Thumbnail
 
errorIfUnloaded() - Method in class ome.model.enums.AcquisitionMode
 
errorIfUnloaded() - Method in class ome.model.enums.AdminPrivilege
 
errorIfUnloaded() - Method in class ome.model.enums.ArcType
 
errorIfUnloaded() - Method in class ome.model.enums.Binning
 
errorIfUnloaded() - Method in class ome.model.enums.ChecksumAlgorithm
 
errorIfUnloaded() - Method in class ome.model.enums.ContrastMethod
 
errorIfUnloaded() - Method in class ome.model.enums.Correction
 
errorIfUnloaded() - Method in class ome.model.enums.DetectorType
 
errorIfUnloaded() - Method in class ome.model.enums.DimensionOrder
 
errorIfUnloaded() - Method in class ome.model.enums.EventType
 
errorIfUnloaded() - Method in class ome.model.enums.ExperimentType
 
errorIfUnloaded() - Method in class ome.model.enums.Family
 
errorIfUnloaded() - Method in class ome.model.enums.FilamentType
 
errorIfUnloaded() - Method in class ome.model.enums.FilterType
 
errorIfUnloaded() - Method in class ome.model.enums.Format
 
errorIfUnloaded() - Method in class ome.model.enums.Illumination
 
errorIfUnloaded() - Method in class ome.model.enums.Immersion
 
errorIfUnloaded() - Method in class ome.model.enums.LaserMedium
 
errorIfUnloaded() - Method in class ome.model.enums.LaserType
 
errorIfUnloaded() - Method in class ome.model.enums.Medium
 
errorIfUnloaded() - Method in class ome.model.enums.MicrobeamManipulationType
 
errorIfUnloaded() - Method in class ome.model.enums.MicroscopeType
 
errorIfUnloaded() - Method in class ome.model.enums.PhotometricInterpretation
 
errorIfUnloaded() - Method in class ome.model.enums.PixelsType
 
errorIfUnloaded() - Method in class ome.model.enums.ProjectionAxis
 
errorIfUnloaded() - Method in class ome.model.enums.ProjectionType
 
errorIfUnloaded() - Method in class ome.model.enums.Pulse
 
errorIfUnloaded() - Method in class ome.model.enums.RenderingModel
 
errorIfUnloaded() - Method in class ome.model.experiment.Experiment
 
errorIfUnloaded() - Method in class ome.model.experiment.MicrobeamManipulation
 
errorIfUnloaded() - Method in class ome.model.fs.Fileset
 
errorIfUnloaded() - Method in class ome.model.fs.FilesetEntry
 
errorIfUnloaded() - Method in class ome.model.fs.FilesetJobLink
 
errorIfUnloaded() - Method in class ome.model.internal.Link
 
errorIfUnloaded() - Method in class ome.model.jobs.Job
 
errorIfUnloaded() - Method in class ome.model.jobs.JobOriginalFileLink
 
errorIfUnloaded() - Method in class ome.model.jobs.JobStatus
 
errorIfUnloaded() - Method in class ome.model.meta.DBPatch
 
errorIfUnloaded() - Method in class ome.model.meta.Event
 
errorIfUnloaded() - Method in class ome.model.meta.EventLog
 
errorIfUnloaded() - Method in class ome.model.meta.Experimenter
 
errorIfUnloaded() - Method in class ome.model.meta.ExperimenterGroup
 
errorIfUnloaded() - Method in class ome.model.meta.ExternalInfo
 
errorIfUnloaded() - Method in class ome.model.meta.GroupExperimenterMap
 
errorIfUnloaded() - Method in class ome.model.meta.Namespace
 
errorIfUnloaded() - Method in class ome.model.meta.Node
 
errorIfUnloaded() - Method in class ome.model.meta.Session
 
errorIfUnloaded() - Method in class ome.model.meta.ShareMember
 
errorIfUnloaded() - Method in class ome.model.roi.AffineTransform
 
errorIfUnloaded() - Method in class ome.model.roi.Roi
 
errorIfUnloaded() - Method in class ome.model.roi.Shape
 
errorIfUnloaded() - Method in class ome.model.screen.Plate
 
errorIfUnloaded() - Method in class ome.model.screen.PlateAcquisition
 
errorIfUnloaded() - Method in class ome.model.screen.Reagent
 
errorIfUnloaded() - Method in class ome.model.screen.Screen
 
errorIfUnloaded() - Method in class ome.model.screen.ScreenPlateLink
 
errorIfUnloaded() - Method in class ome.model.screen.Well
 
errorIfUnloaded() - Method in class ome.model.screen.WellReagentLink
 
errorIfUnloaded() - Method in class ome.model.screen.WellSample
 
errorIfUnloaded() - Method in class ome.model.stats.StatsInfo
 
Event - Class in ome.model.meta
 
Event() - Constructor for class ome.model.meta.Event
 
Event(Long) - Constructor for class ome.model.meta.Event
 
Event(Long, boolean) - Constructor for class ome.model.meta.Event
Main constructor.
Event(Timestamp, Experimenter, ExperimenterGroup, EventType, Session) - Constructor for class ome.model.meta.Event
 
event - Variable in class ome.model.meta.EventLog
 
EVENT - Static variable in class ome.model.meta.EventLog
 
Event.Details - Class in ome.model.meta
 
event2timestamp(Event) - Method in class ome.util.ModelMapper
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Arc
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Detector
 
EVENT_FILTER - Static variable in class ome.model.acquisition.DetectorSettings
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Dichroic
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Filament
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Filter
 
EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSet
 
EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
EVENT_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
EVENT_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource
 
EVENT_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Laser
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightPath
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightSettings
 
EVENT_FILTER - Static variable in class ome.model.acquisition.LightSource
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Microscope
 
EVENT_FILTER - Static variable in class ome.model.acquisition.Objective
 
EVENT_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings
 
EVENT_FILTER - Static variable in class ome.model.acquisition.OTF
 
EVENT_FILTER - Static variable in class ome.model.acquisition.StageLabel
 
EVENT_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange
 
EVENT_FILTER - Static variable in class ome.model.annotations.Annotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.BasicAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.CommentAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.FileAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ListAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.LongAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.MapAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.NumericAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.TagAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.TermAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.TextAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.TypeAnnotation
 
EVENT_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink
 
EVENT_FILTER - Static variable in class ome.model.annotations.XmlAnnotation
 
EVENT_FILTER - Static variable in class ome.model.containers.Dataset
 
EVENT_FILTER - Static variable in class ome.model.containers.DatasetImageLink
 
EVENT_FILTER - Static variable in class ome.model.containers.Folder
 
EVENT_FILTER - Static variable in class ome.model.containers.FolderImageLink
 
EVENT_FILTER - Static variable in class ome.model.containers.FolderRoiLink
 
EVENT_FILTER - Static variable in class ome.model.containers.Project
 
EVENT_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink
 
EVENT_FILTER - Static variable in class ome.model.core.Channel
 
EVENT_FILTER - Static variable in class ome.model.core.Image
 
EVENT_FILTER - Static variable in class ome.model.core.LogicalChannel
 
EVENT_FILTER - Static variable in class ome.model.core.OriginalFile
 
EVENT_FILTER - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap
 
EVENT_FILTER - Static variable in class ome.model.core.PlaneInfo
 
EVENT_FILTER - Static variable in class ome.model.display.ChannelBinding
 
EVENT_FILTER - Static variable in class ome.model.display.CodomainMapContext
 
EVENT_FILTER - Static variable in class ome.model.display.ContrastStretchingContext
 
EVENT_FILTER - Static variable in class ome.model.display.PlaneSlicingContext
 
EVENT_FILTER - Static variable in class ome.model.display.ProjectionDef
 
EVENT_FILTER - Static variable in class ome.model.display.QuantumDef
 
EVENT_FILTER - Static variable in class ome.model.display.RenderingDef
 
EVENT_FILTER - Static variable in class ome.model.display.ReverseIntensityContext
 
EVENT_FILTER - Static variable in class ome.model.display.Thumbnail
 
EVENT_FILTER - Static variable in class ome.model.experiment.Experiment
 
EVENT_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation
 
EVENT_FILTER - Static variable in class ome.model.fs.Fileset
 
EVENT_FILTER - Static variable in class ome.model.fs.FilesetEntry
 
EVENT_FILTER - Static variable in class ome.model.fs.FilesetJobLink
 
EVENT_FILTER - Static variable in class ome.model.internal.Link
 
EVENT_FILTER - Static variable in class ome.model.jobs.ImportJob
Deprecated.
 
EVENT_FILTER - Static variable in class ome.model.jobs.IndexingJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.Job
 
EVENT_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink
 
EVENT_FILTER - Static variable in class ome.model.jobs.MetadataImportJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.ParseJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.PixelDataJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.ScriptJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob
 
EVENT_FILTER - Static variable in class ome.model.jobs.UploadJob
 
EVENT_FILTER - Static variable in class ome.model.meta.ExternalInfo
 
EVENT_FILTER - Static variable in class ome.model.roi.AffineTransform
 
EVENT_FILTER - Static variable in class ome.model.roi.Ellipse
 
EVENT_FILTER - Static variable in class ome.model.roi.Label
 
EVENT_FILTER - Static variable in class ome.model.roi.Line
 
EVENT_FILTER - Static variable in class ome.model.roi.Mask
 
EVENT_FILTER - Static variable in class ome.model.roi.Path
Deprecated.
 
EVENT_FILTER - Static variable in class ome.model.roi.Point
 
EVENT_FILTER - Static variable in class ome.model.roi.Polygon
 
EVENT_FILTER - Static variable in class ome.model.roi.Polyline
 
EVENT_FILTER - Static variable in class ome.model.roi.Rectangle
 
EVENT_FILTER - Static variable in class ome.model.roi.Roi
 
EVENT_FILTER - Static variable in class ome.model.roi.Shape
 
EVENT_FILTER - Static variable in class ome.model.screen.Plate
 
EVENT_FILTER - Static variable in class ome.model.screen.PlateAcquisition
 
EVENT_FILTER - Static variable in class ome.model.screen.Reagent
 
EVENT_FILTER - Static variable in class ome.model.screen.Screen
 
EVENT_FILTER - Static variable in class ome.model.screen.ScreenPlateLink
 
EVENT_FILTER - Static variable in class ome.model.screen.Well
 
EVENT_FILTER - Static variable in class ome.model.screen.WellReagentLink
 
EVENT_FILTER - Static variable in class ome.model.screen.WellSample
 
EVENT_FILTER - Static variable in class ome.model.stats.StatsInfo
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
 
EVENT_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
 
EVENT_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel
 
EVENT_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder
 
EVENT_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project
 
EVENT_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image
 
EVENT_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
EVENT_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
EVENT_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
EVENT_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
 
EVENT_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image
 
EVENT_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi
 
EVENT_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset
 
EVENT_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder
 
EVENT_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset
 
EVENT_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset
 
EVENT_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
 
EVENT_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
 
EVENT_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
 
EVENT_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument
 
EVENT_FILTER_PIXELS - Static variable in class ome.model.core.Image
 
EVENT_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
 
EVENT_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
 
EVENT_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen
 
EVENT_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef
 
EVENT_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset
 
EVENT_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well
 
EVENT_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen
 
EVENT_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder
 
EVENT_FILTER_ROIS - Static variable in class ome.model.core.Image
 
EVENT_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate
 
EVENT_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER_SHAPES - Static variable in class ome.model.roi.Roi
 
EVENT_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
 
EVENT_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels
 
EVENT_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset
 
EVENT_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef
 
EVENT_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent
 
EVENT_FILTER_WELLS - Static variable in class ome.model.screen.Plate
 
EVENT_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
 
EVENT_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image
 
EVENT_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well
 
eventId - Variable in class ome.util.SqlAction.DeleteLog
 
EventLog - Class in ome.model.meta
 
EventLog() - Constructor for class ome.model.meta.EventLog
 
EventLog(Long) - Constructor for class ome.model.meta.EventLog
 
EventLog(Long, boolean) - Constructor for class ome.model.meta.EventLog
Main constructor.
EventLog(Long, String, String, Event) - Constructor for class ome.model.meta.EventLog
 
EventLog.Details - Class in ome.model.meta
 
events - Variable in class ome.model.meta.Session
 
EVENTS - Static variable in class ome.model.meta.Session
 
EventType - Class in ome.model.enums
 
EventType() - Constructor for class ome.model.enums.EventType
 
EventType(Long) - Constructor for class ome.model.enums.EventType
 
EventType(Long, boolean) - Constructor for class ome.model.enums.EventType
Main constructor.
EventType(String) - Constructor for class ome.model.enums.EventType
 
EventType.Details - Class in ome.model.enums
 
excitationFilterLink - Variable in class ome.model.acquisition.Filter
 
EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
excitationFilterLink - Variable in class ome.model.acquisition.FilterSet
 
EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
excitationFilterLink - Variable in class ome.model.acquisition.LightPath
 
EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.Filter
 
EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.FilterSet
 
EXCITATIONFILTERLINKCOUNTPEROWNER - Static variable in class ome.model.acquisition.LightPath
 
excitationWave - Variable in class ome.model.core.LogicalChannel
 
EXCITATIONWAVE - Static variable in class ome.model.core.LogicalChannel
 
exit(Object) - Method in class ome.util.ContextFilter
 
exp(long) - Method in class ome.parameters.Parameters
 
experiment - Variable in class ome.model.core.Image
 
EXPERIMENT - Static variable in class ome.model.core.Image
 
Experiment - Class in ome.model.experiment
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Experiment() - Constructor for class ome.model.experiment.Experiment
 
Experiment(Long) - Constructor for class ome.model.experiment.Experiment
 
Experiment(Long, boolean) - Constructor for class ome.model.experiment.Experiment
Main constructor.
Experiment(ExperimentType) - Constructor for class ome.model.experiment.Experiment
 
experiment - Variable in class ome.model.experiment.MicrobeamManipulation
 
EXPERIMENT - Static variable in class ome.model.experiment.MicrobeamManipulation
 
Experiment.Details - Class in ome.model.experiment
 
experimenter - Variable in class ome.model.meta.Event
 
EXPERIMENTER - Static variable in class ome.model.meta.Event
 
Experimenter - Class in ome.model.meta
 
Experimenter() - Constructor for class ome.model.meta.Experimenter
 
Experimenter(Long) - Constructor for class ome.model.meta.Experimenter
 
Experimenter(Long, boolean) - Constructor for class ome.model.meta.Experimenter
Main constructor.
Experimenter(String, String, String, Boolean) - Constructor for class ome.model.meta.Experimenter
 
Experimenter.Details - Class in ome.model.meta
 
ExperimenterAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ExperimenterAnnotationLink() - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
 
ExperimenterAnnotationLink(Long) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
 
ExperimenterAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
Main constructor.
ExperimenterAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ExperimenterAnnotationLink
 
ExperimenterAnnotationLink.Details - Class in ome.model.annotations
 
experimenterGroup - Variable in class ome.model.meta.Event
 
EXPERIMENTERGROUP - Static variable in class ome.model.meta.Event
 
ExperimenterGroup - Class in ome.model.meta
 
ExperimenterGroup() - Constructor for class ome.model.meta.ExperimenterGroup
 
ExperimenterGroup(Long) - Constructor for class ome.model.meta.ExperimenterGroup
 
ExperimenterGroup(Long, boolean) - Constructor for class ome.model.meta.ExperimenterGroup
Main constructor.
ExperimenterGroup(String, Boolean) - Constructor for class ome.model.meta.ExperimenterGroup
 
ExperimenterGroup.Details - Class in ome.model.meta
 
ExperimenterGroupAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ExperimenterGroupAnnotationLink() - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
 
ExperimenterGroupAnnotationLink(Long) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
 
ExperimenterGroupAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
Main constructor.
ExperimenterGroupAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ExperimenterGroupAnnotationLink
 
ExperimenterGroupAnnotationLink.Details - Class in ome.model.annotations
 
ExperimentType - Class in ome.model.enums
 
ExperimentType() - Constructor for class ome.model.enums.ExperimentType
 
ExperimentType(Long) - Constructor for class ome.model.enums.ExperimentType
 
ExperimentType(Long, boolean) - Constructor for class ome.model.enums.ExperimentType
Main constructor.
ExperimentType(String) - Constructor for class ome.model.enums.ExperimentType
 
ExperimentType.Details - Class in ome.model.enums
 
ExpiredCredentialException - Exception in ome.conditions
Correct username and credentials provided, but credentials expired.
ExpiredCredentialException(String) - Constructor for exception ome.conditions.ExpiredCredentialException
 
exposureTime - Variable in class ome.model.core.PlaneInfo
 
EXPOSURETIME - Static variable in class ome.model.core.PlaneInfo
 
externalDescription - Variable in class ome.model.screen.Well
 
EXTERNALDESCRIPTION - Static variable in class ome.model.screen.Well
 
externalIdentifier - Variable in class ome.model.screen.Plate
 
EXTERNALIDENTIFIER - Static variable in class ome.model.screen.Plate
 
externalIdentifier - Variable in class ome.model.screen.Well
 
EXTERNALIDENTIFIER - Static variable in class ome.model.screen.Well
 
EXTERNALINFO - Static variable in class ome.model.internal.Details
 
ExternalInfo - Class in ome.model.meta
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ExternalInfo() - Constructor for class ome.model.meta.ExternalInfo
 
ExternalInfo(Long) - Constructor for class ome.model.meta.ExternalInfo
 
ExternalInfo(Long, boolean) - Constructor for class ome.model.meta.ExternalInfo
Main constructor.
ExternalInfo(Long, String) - Constructor for class ome.model.meta.ExternalInfo
 
ExternalInfo.Details - Class in ome.model.meta
 

F

family - Variable in class ome.model.display.ChannelBinding
 
FAMILY - Static variable in class ome.model.display.ChannelBinding
 
Family - Class in ome.model.enums
 
Family() - Constructor for class ome.model.enums.Family
 
Family(Long) - Constructor for class ome.model.enums.Family
 
Family(Long, boolean) - Constructor for class ome.model.enums.Family
Main constructor.
Family(String) - Constructor for class ome.model.enums.Family
 
Family.Details - Class in ome.model.enums
 
FIELDS - Static variable in class ome.model.acquisition.Arc
 
fields() - Method in class ome.model.acquisition.Arc
 
FIELDS - Static variable in class ome.model.acquisition.Detector
 
fields() - Method in class ome.model.acquisition.Detector
 
FIELDS - Static variable in class ome.model.acquisition.DetectorSettings
 
fields() - Method in class ome.model.acquisition.DetectorSettings
 
FIELDS - Static variable in class ome.model.acquisition.Dichroic
 
fields() - Method in class ome.model.acquisition.Dichroic
 
FIELDS - Static variable in class ome.model.acquisition.Filament
 
fields() - Method in class ome.model.acquisition.Filament
 
FIELDS - Static variable in class ome.model.acquisition.Filter
 
fields() - Method in class ome.model.acquisition.Filter
 
FIELDS - Static variable in class ome.model.acquisition.FilterSet
 
fields() - Method in class ome.model.acquisition.FilterSet
 
FIELDS - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
fields() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
FIELDS - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
fields() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
FIELDS - Static variable in class ome.model.acquisition.GenericExcitationSource
 
fields() - Method in class ome.model.acquisition.GenericExcitationSource
 
FIELDS - Static variable in class ome.model.acquisition.ImagingEnvironment
 
fields() - Method in class ome.model.acquisition.ImagingEnvironment
 
FIELDS - Static variable in class ome.model.acquisition.Instrument
 
fields() - Method in class ome.model.acquisition.Instrument
 
FIELDS - Static variable in class ome.model.acquisition.Laser
 
fields() - Method in class ome.model.acquisition.Laser
 
FIELDS - Static variable in class ome.model.acquisition.LightEmittingDiode
 
fields() - Method in class ome.model.acquisition.LightEmittingDiode
 
FIELDS - Static variable in class ome.model.acquisition.LightPath
 
fields() - Method in class ome.model.acquisition.LightPath
 
FIELDS - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
fields() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
FIELDS - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
fields() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
FIELDS - Static variable in class ome.model.acquisition.LightSettings
 
fields() - Method in class ome.model.acquisition.LightSettings
 
FIELDS - Static variable in class ome.model.acquisition.LightSource
 
fields() - Method in class ome.model.acquisition.LightSource
 
FIELDS - Static variable in class ome.model.acquisition.Microscope
 
fields() - Method in class ome.model.acquisition.Microscope
 
FIELDS - Static variable in class ome.model.acquisition.Objective
 
fields() - Method in class ome.model.acquisition.Objective
 
FIELDS - Static variable in class ome.model.acquisition.ObjectiveSettings
 
fields() - Method in class ome.model.acquisition.ObjectiveSettings
 
FIELDS - Static variable in class ome.model.acquisition.OTF
 
fields() - Method in class ome.model.acquisition.OTF
 
FIELDS - Static variable in class ome.model.acquisition.StageLabel
 
fields() - Method in class ome.model.acquisition.StageLabel
 
FIELDS - Static variable in class ome.model.acquisition.TransmittanceRange
 
fields() - Method in class ome.model.acquisition.TransmittanceRange
 
FIELDS - Static variable in class ome.model.annotations.Annotation
 
fields() - Method in class ome.model.annotations.Annotation
 
FIELDS - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
fields() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.BasicAnnotation
 
fields() - Method in class ome.model.annotations.BasicAnnotation
 
FIELDS - Static variable in class ome.model.annotations.BooleanAnnotation
 
fields() - Method in class ome.model.annotations.BooleanAnnotation
 
FIELDS - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
fields() - Method in class ome.model.annotations.ChannelAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.CommentAnnotation
 
fields() - Method in class ome.model.annotations.CommentAnnotation
 
FIELDS - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
fields() - Method in class ome.model.annotations.DatasetAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
fields() - Method in class ome.model.annotations.DetectorAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
fields() - Method in class ome.model.annotations.DichroicAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.DoubleAnnotation
 
fields() - Method in class ome.model.annotations.DoubleAnnotation
 
FIELDS - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
fields() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
fields() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.FileAnnotation
 
fields() - Method in class ome.model.annotations.FileAnnotation
 
FIELDS - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
fields() - Method in class ome.model.annotations.FilesetAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.FilterAnnotationLink
 
fields() - Method in class ome.model.annotations.FilterAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.FolderAnnotationLink
 
fields() - Method in class ome.model.annotations.FolderAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ImageAnnotationLink
 
fields() - Method in class ome.model.annotations.ImageAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
fields() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
fields() - Method in class ome.model.annotations.LightPathAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
fields() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ListAnnotation
 
fields() - Method in class ome.model.annotations.ListAnnotation
 
FIELDS - Static variable in class ome.model.annotations.LongAnnotation
 
fields() - Method in class ome.model.annotations.LongAnnotation
 
FIELDS - Static variable in class ome.model.annotations.MapAnnotation
 
fields() - Method in class ome.model.annotations.MapAnnotation
 
FIELDS - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
fields() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.NodeAnnotationLink
 
fields() - Method in class ome.model.annotations.NodeAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.NumericAnnotation
 
fields() - Method in class ome.model.annotations.NumericAnnotation
 
FIELDS - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
fields() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
fields() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
fields() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
fields() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.PlateAnnotationLink
 
fields() - Method in class ome.model.annotations.PlateAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
fields() - Method in class ome.model.annotations.ProjectAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
fields() - Method in class ome.model.annotations.ReagentAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.RoiAnnotationLink
 
fields() - Method in class ome.model.annotations.RoiAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
fields() - Method in class ome.model.annotations.ScreenAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.SessionAnnotationLink
 
fields() - Method in class ome.model.annotations.SessionAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
fields() - Method in class ome.model.annotations.ShapeAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.TagAnnotation
 
fields() - Method in class ome.model.annotations.TagAnnotation
 
FIELDS - Static variable in class ome.model.annotations.TermAnnotation
 
fields() - Method in class ome.model.annotations.TermAnnotation
 
FIELDS - Static variable in class ome.model.annotations.TextAnnotation
 
fields() - Method in class ome.model.annotations.TextAnnotation
 
FIELDS - Static variable in class ome.model.annotations.TimestampAnnotation
 
fields() - Method in class ome.model.annotations.TimestampAnnotation
 
FIELDS - Static variable in class ome.model.annotations.TypeAnnotation
 
fields() - Method in class ome.model.annotations.TypeAnnotation
 
FIELDS - Static variable in class ome.model.annotations.WellAnnotationLink
 
fields() - Method in class ome.model.annotations.WellAnnotationLink
 
FIELDS - Static variable in class ome.model.annotations.XmlAnnotation
 
fields() - Method in class ome.model.annotations.XmlAnnotation
 
FIELDS - Static variable in class ome.model.containers.Dataset
 
fields() - Method in class ome.model.containers.Dataset
 
FIELDS - Static variable in class ome.model.containers.DatasetImageLink
 
fields() - Method in class ome.model.containers.DatasetImageLink
 
FIELDS - Static variable in class ome.model.containers.Folder
 
fields() - Method in class ome.model.containers.Folder
 
FIELDS - Static variable in class ome.model.containers.FolderImageLink
 
fields() - Method in class ome.model.containers.FolderImageLink
 
FIELDS - Static variable in class ome.model.containers.FolderRoiLink
 
fields() - Method in class ome.model.containers.FolderRoiLink
 
FIELDS - Static variable in class ome.model.containers.Project
 
fields() - Method in class ome.model.containers.Project
 
FIELDS - Static variable in class ome.model.containers.ProjectDatasetLink
 
fields() - Method in class ome.model.containers.ProjectDatasetLink
 
FIELDS - Static variable in class ome.model.core.Channel
 
fields() - Method in class ome.model.core.Channel
 
FIELDS - Static variable in class ome.model.core.Image
 
fields() - Method in class ome.model.core.Image
 
FIELDS - Static variable in class ome.model.core.LogicalChannel
 
fields() - Method in class ome.model.core.LogicalChannel
 
FIELDS - Static variable in class ome.model.core.OriginalFile
 
fields() - Method in class ome.model.core.OriginalFile
 
FIELDS - Static variable in class ome.model.core.Pixels
 
fields() - Method in class ome.model.core.Pixels
 
FIELDS - Static variable in class ome.model.core.PixelsOriginalFileMap
 
fields() - Method in class ome.model.core.PixelsOriginalFileMap
 
FIELDS - Static variable in class ome.model.core.PlaneInfo
 
fields() - Method in class ome.model.core.PlaneInfo
 
FIELDS - Static variable in class ome.model.display.ChannelBinding
 
fields() - Method in class ome.model.display.ChannelBinding
 
FIELDS - Static variable in class ome.model.display.CodomainMapContext
 
fields() - Method in class ome.model.display.CodomainMapContext
 
FIELDS - Static variable in class ome.model.display.ContrastStretchingContext
 
fields() - Method in class ome.model.display.ContrastStretchingContext
 
FIELDS - Static variable in class ome.model.display.PlaneSlicingContext
 
fields() - Method in class ome.model.display.PlaneSlicingContext
 
FIELDS - Static variable in class ome.model.display.ProjectionDef
 
fields() - Method in class ome.model.display.ProjectionDef
 
FIELDS - Static variable in class ome.model.display.QuantumDef
 
fields() - Method in class ome.model.display.QuantumDef
 
FIELDS - Static variable in class ome.model.display.RenderingDef
 
fields() - Method in class ome.model.display.RenderingDef
 
FIELDS - Static variable in class ome.model.display.ReverseIntensityContext
 
fields() - Method in class ome.model.display.ReverseIntensityContext
 
FIELDS - Static variable in class ome.model.display.Thumbnail
 
fields() - Method in class ome.model.display.Thumbnail
 
FIELDS - Static variable in class ome.model.enums.AcquisitionMode
 
fields() - Method in class ome.model.enums.AcquisitionMode
 
FIELDS - Static variable in class ome.model.enums.AdminPrivilege
 
fields() - Method in class ome.model.enums.AdminPrivilege
 
FIELDS - Static variable in class ome.model.enums.ArcType
 
fields() - Method in class ome.model.enums.ArcType
 
FIELDS - Static variable in class ome.model.enums.Binning
 
fields() - Method in class ome.model.enums.Binning
 
FIELDS - Static variable in class ome.model.enums.ChecksumAlgorithm
 
fields() - Method in class ome.model.enums.ChecksumAlgorithm
 
FIELDS - Static variable in class ome.model.enums.ContrastMethod
 
fields() - Method in class ome.model.enums.ContrastMethod
 
FIELDS - Static variable in class ome.model.enums.Correction
 
fields() - Method in class ome.model.enums.Correction
 
FIELDS - Static variable in class ome.model.enums.DetectorType
 
fields() - Method in class ome.model.enums.DetectorType
 
FIELDS - Static variable in class ome.model.enums.DimensionOrder
 
fields() - Method in class ome.model.enums.DimensionOrder
 
FIELDS - Static variable in class ome.model.enums.EventType
 
fields() - Method in class ome.model.enums.EventType
 
FIELDS - Static variable in class ome.model.enums.ExperimentType
 
fields() - Method in class ome.model.enums.ExperimentType
 
FIELDS - Static variable in class ome.model.enums.Family
 
fields() - Method in class ome.model.enums.Family
 
FIELDS - Static variable in class ome.model.enums.FilamentType
 
fields() - Method in class ome.model.enums.FilamentType
 
FIELDS - Static variable in class ome.model.enums.FilterType
 
fields() - Method in class ome.model.enums.FilterType
 
FIELDS - Static variable in class ome.model.enums.Format
 
fields() - Method in class ome.model.enums.Format
 
FIELDS - Static variable in class ome.model.enums.Illumination
 
fields() - Method in class ome.model.enums.Illumination
 
FIELDS - Static variable in class ome.model.enums.Immersion
 
fields() - Method in class ome.model.enums.Immersion
 
FIELDS - Static variable in class ome.model.enums.LaserMedium
 
fields() - Method in class ome.model.enums.LaserMedium
 
FIELDS - Static variable in class ome.model.enums.LaserType
 
fields() - Method in class ome.model.enums.LaserType
 
FIELDS - Static variable in class ome.model.enums.Medium
 
fields() - Method in class ome.model.enums.Medium
 
FIELDS - Static variable in class ome.model.enums.MicrobeamManipulationType
 
fields() - Method in class ome.model.enums.MicrobeamManipulationType
 
FIELDS - Static variable in class ome.model.enums.MicroscopeType
 
fields() - Method in class ome.model.enums.MicroscopeType
 
FIELDS - Static variable in class ome.model.enums.PhotometricInterpretation
 
fields() - Method in class ome.model.enums.PhotometricInterpretation
 
FIELDS - Static variable in class ome.model.enums.PixelsType
 
fields() - Method in class ome.model.enums.PixelsType
 
FIELDS - Static variable in class ome.model.enums.ProjectionAxis
 
fields() - Method in class ome.model.enums.ProjectionAxis
 
FIELDS - Static variable in class ome.model.enums.ProjectionType
 
fields() - Method in class ome.model.enums.ProjectionType
 
FIELDS - Static variable in class ome.model.enums.Pulse
 
fields() - Method in class ome.model.enums.Pulse
 
FIELDS - Static variable in class ome.model.enums.RenderingModel
 
fields() - Method in class ome.model.enums.RenderingModel
 
FIELDS - Static variable in class ome.model.experiment.Experiment
 
fields() - Method in class ome.model.experiment.Experiment
 
FIELDS - Static variable in class ome.model.experiment.MicrobeamManipulation
 
fields() - Method in class ome.model.experiment.MicrobeamManipulation
 
FIELDS - Static variable in class ome.model.fs.Fileset
 
fields() - Method in class ome.model.fs.Fileset
 
FIELDS - Static variable in class ome.model.fs.FilesetEntry
 
fields() - Method in class ome.model.fs.FilesetEntry
 
FIELDS - Static variable in class ome.model.fs.FilesetJobLink
 
fields() - Method in class ome.model.fs.FilesetJobLink
 
FIELDS - Static variable in class ome.model.internal.Link
 
fields() - Method in class ome.model.internal.Link
 
fields() - Method in interface ome.model.IObject
returns a Set of field names that belong to this class
FIELDS - Static variable in class ome.model.jobs.ImportJob
Deprecated.
 
fields() - Method in class ome.model.jobs.ImportJob
Deprecated.
 
FIELDS - Static variable in class ome.model.jobs.IndexingJob
 
fields() - Method in class ome.model.jobs.IndexingJob
 
FIELDS - Static variable in class ome.model.jobs.IntegrityCheckJob
 
fields() - Method in class ome.model.jobs.IntegrityCheckJob
 
FIELDS - Static variable in class ome.model.jobs.Job
 
fields() - Method in class ome.model.jobs.Job
 
FIELDS - Static variable in class ome.model.jobs.JobOriginalFileLink
 
fields() - Method in class ome.model.jobs.JobOriginalFileLink
 
FIELDS - Static variable in class ome.model.jobs.JobStatus
 
fields() - Method in class ome.model.jobs.JobStatus
 
FIELDS - Static variable in class ome.model.jobs.MetadataImportJob
 
fields() - Method in class ome.model.jobs.MetadataImportJob
 
FIELDS - Static variable in class ome.model.jobs.ParseJob
 
fields() - Method in class ome.model.jobs.ParseJob
 
FIELDS - Static variable in class ome.model.jobs.PixelDataJob
 
fields() - Method in class ome.model.jobs.PixelDataJob
 
FIELDS - Static variable in class ome.model.jobs.ScriptJob
 
fields() - Method in class ome.model.jobs.ScriptJob
 
FIELDS - Static variable in class ome.model.jobs.ThumbnailGenerationJob
 
fields() - Method in class ome.model.jobs.ThumbnailGenerationJob
 
FIELDS - Static variable in class ome.model.jobs.UploadJob
 
fields() - Method in class ome.model.jobs.UploadJob
 
FIELDS - Static variable in class ome.model.meta.DBPatch
 
fields() - Method in class ome.model.meta.DBPatch
 
FIELDS - Static variable in class ome.model.meta.Event
 
fields() - Method in class ome.model.meta.Event
 
FIELDS - Static variable in class ome.model.meta.EventLog
 
fields() - Method in class ome.model.meta.EventLog
 
FIELDS - Static variable in class ome.model.meta.Experimenter
 
fields() - Method in class ome.model.meta.Experimenter
 
FIELDS - Static variable in class ome.model.meta.ExperimenterGroup
 
fields() - Method in class ome.model.meta.ExperimenterGroup
 
FIELDS - Static variable in class ome.model.meta.ExternalInfo
 
fields() - Method in class ome.model.meta.ExternalInfo
 
FIELDS - Static variable in class ome.model.meta.GroupExperimenterMap
 
fields() - Method in class ome.model.meta.GroupExperimenterMap
 
FIELDS - Static variable in class ome.model.meta.Namespace
 
fields() - Method in class ome.model.meta.Namespace
 
FIELDS - Static variable in class ome.model.meta.Node
 
fields() - Method in class ome.model.meta.Node
 
FIELDS - Static variable in class ome.model.meta.Session
 
fields() - Method in class ome.model.meta.Session
 
FIELDS - Static variable in class ome.model.meta.Share
 
fields() - Method in class ome.model.meta.Share
 
FIELDS - Static variable in class ome.model.meta.ShareMember
 
fields() - Method in class ome.model.meta.ShareMember
 
FIELDS - Static variable in class ome.model.roi.AffineTransform
 
fields() - Method in class ome.model.roi.AffineTransform
 
FIELDS - Static variable in class ome.model.roi.Ellipse
 
fields() - Method in class ome.model.roi.Ellipse
 
FIELDS - Static variable in class ome.model.roi.Label
 
fields() - Method in class ome.model.roi.Label
 
FIELDS - Static variable in class ome.model.roi.Line
 
fields() - Method in class ome.model.roi.Line
 
FIELDS - Static variable in class ome.model.roi.Mask
 
fields() - Method in class ome.model.roi.Mask
 
FIELDS - Static variable in class ome.model.roi.Path
Deprecated.
 
fields() - Method in class ome.model.roi.Path
Deprecated.
 
FIELDS - Static variable in class ome.model.roi.Point
 
fields() - Method in class ome.model.roi.Point
 
FIELDS - Static variable in class ome.model.roi.Polygon
 
fields() - Method in class ome.model.roi.Polygon
 
FIELDS - Static variable in class ome.model.roi.Polyline
 
fields() - Method in class ome.model.roi.Polyline
 
FIELDS - Static variable in class ome.model.roi.Rectangle
 
fields() - Method in class ome.model.roi.Rectangle
 
FIELDS - Static variable in class ome.model.roi.Roi
 
fields() - Method in class ome.model.roi.Roi
 
FIELDS - Static variable in class ome.model.roi.Shape
 
fields() - Method in class ome.model.roi.Shape
 
FIELDS - Static variable in class ome.model.screen.Plate
 
fields() - Method in class ome.model.screen.Plate
 
FIELDS - Static variable in class ome.model.screen.PlateAcquisition
 
fields() - Method in class ome.model.screen.PlateAcquisition
 
FIELDS - Static variable in class ome.model.screen.Reagent
 
fields() - Method in class ome.model.screen.Reagent
 
FIELDS - Static variable in class ome.model.screen.Screen
 
fields() - Method in class ome.model.screen.Screen
 
FIELDS - Static variable in class ome.model.screen.ScreenPlateLink
 
fields() - Method in class ome.model.screen.ScreenPlateLink
 
FIELDS - Static variable in class ome.model.screen.Well
 
fields() - Method in class ome.model.screen.Well
 
FIELDS - Static variable in class ome.model.screen.WellReagentLink
 
fields() - Method in class ome.model.screen.WellReagentLink
 
FIELDS - Static variable in class ome.model.screen.WellSample
 
fields() - Method in class ome.model.screen.WellSample
 
FIELDS - Static variable in class ome.model.stats.StatsInfo
 
fields() - Method in class ome.model.stats.StatsInfo
 
fields() - Method in class ome.util.PermDetails
 
Filament - Class in ome.model.acquisition
 
Filament() - Constructor for class ome.model.acquisition.Filament
 
Filament(Long) - Constructor for class ome.model.acquisition.Filament
 
Filament(Long, boolean) - Constructor for class ome.model.acquisition.Filament
Main constructor.
Filament(FilamentType) - Constructor for class ome.model.acquisition.Filament
 
FilamentType - Class in ome.model.enums
 
FilamentType() - Constructor for class ome.model.enums.FilamentType
 
FilamentType(Long) - Constructor for class ome.model.enums.FilamentType
 
FilamentType(Long, boolean) - Constructor for class ome.model.enums.FilamentType
Main constructor.
FilamentType(String) - Constructor for class ome.model.enums.FilamentType
 
FilamentType.Details - Class in ome.model.enums
 
file - Variable in class ome.model.annotations.FileAnnotation
 
FILE - Static variable in class ome.model.annotations.FileAnnotation
 
FileAnnotation - Class in ome.model.annotations
 
FileAnnotation() - Constructor for class ome.model.annotations.FileAnnotation
 
FileAnnotation(Long) - Constructor for class ome.model.annotations.FileAnnotation
 
FileAnnotation(Long, boolean) - Constructor for class ome.model.annotations.FileAnnotation
Main constructor.
fileId - Variable in class ome.util.SqlAction.DeleteLog
 
fileIdsInDb(String, Set<String>) - Method in interface ome.util.SqlAction
Return all IDs matching the given mimetypes, or all IDs if mimetypes is null.
fileIdsInDb(String, Set<String>) - Method in class ome.util.SqlAction.Impl
 
fileRepo(long) - Method in interface ome.util.SqlAction
 
fileRepo(long) - Method in class ome.util.SqlAction.Impl
 
fileset - Variable in class ome.model.core.Image
 
FILESET - Static variable in class ome.model.core.Image
 
Fileset - Class in ome.model.fs
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Fileset() - Constructor for class ome.model.fs.Fileset
 
Fileset(Long) - Constructor for class ome.model.fs.Fileset
 
Fileset(Long, boolean) - Constructor for class ome.model.fs.Fileset
Main constructor.
Fileset(String) - Constructor for class ome.model.fs.Fileset
 
fileset - Variable in class ome.model.fs.FilesetEntry
 
FILESET - Static variable in class ome.model.fs.FilesetEntry
 
Fileset.Details - Class in ome.model.fs
 
FilesetAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilesetAnnotationLink() - Constructor for class ome.model.annotations.FilesetAnnotationLink
 
FilesetAnnotationLink(Long) - Constructor for class ome.model.annotations.FilesetAnnotationLink
 
FilesetAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FilesetAnnotationLink
Main constructor.
FilesetAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FilesetAnnotationLink
 
FilesetAnnotationLink.Details - Class in ome.model.annotations
 
filesetEntries - Variable in class ome.model.core.OriginalFile
 
FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
 
FilesetEntry - Class in ome.model.fs
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilesetEntry() - Constructor for class ome.model.fs.FilesetEntry
 
FilesetEntry(Long) - Constructor for class ome.model.fs.FilesetEntry
 
FilesetEntry(Long, boolean) - Constructor for class ome.model.fs.FilesetEntry
Main constructor.
FilesetEntry(Fileset, OriginalFile, String) - Constructor for class ome.model.fs.FilesetEntry
 
FilesetEntry.Details - Class in ome.model.fs
 
FilesetJobLink - Class in ome.model.fs
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilesetJobLink() - Constructor for class ome.model.fs.FilesetJobLink
 
FilesetJobLink(Long) - Constructor for class ome.model.fs.FilesetJobLink
 
FilesetJobLink(Long, boolean) - Constructor for class ome.model.fs.FilesetJobLink
Main constructor.
FilesetJobLink(IObject, IObject) - Constructor for class ome.model.fs.FilesetJobLink
 
FilesetJobLink.Details - Class in ome.model.fs
 
fillColor - Variable in class ome.model.roi.Shape
 
FILLCOLOR - Static variable in class ome.model.roi.Shape
 
fillObject(ReverseModelMapper) - Method in interface ome.model.ModelBased
 
fillRule - Variable in class ome.model.roi.Shape
 
FILLRULE - Static variable in class ome.model.roi.Shape
 
Filter - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Filter() - Constructor for class ome.model.acquisition.Filter
 
Filter(Long) - Constructor for class ome.model.acquisition.Filter
 
Filter(Long, boolean) - Constructor for class ome.model.acquisition.Filter
Main constructor.
Filter(Instrument) - Constructor for class ome.model.acquisition.Filter
 
filter - Variable in class ome.model.acquisition.Instrument
 
FILTER - Static variable in class ome.model.acquisition.Instrument
 
Filter - Class in ome.parameters
parameter to generally reduce the size of a query result set.
Filter() - Constructor for class ome.parameters.Filter
 
filter(String, Filterable) - Method in class ome.util.ContextFilter
 
filter(String, Collection) - Method in class ome.util.ContextFilter
iterates over the contents of the collection and filters each.
filter(String, Map) - Method in class ome.util.ContextFilter
filters both the key and value sets of the map.
filter(String, Object) - Method in class ome.util.ContextFilter
used when type is unknown.
filter(String, ContextFilter.Entry) - Method in class ome.util.ContextFilter
doesn't return a new entry.
Filter - Interface in ome.util
marks objects which can be filtered using {see FIXME }.
filter(String, Filterable) - Method in interface ome.util.Filter
 
filter(String, Collection) - Method in interface ome.util.Filter
 
filter(String, Map) - Method in interface ome.util.Filter
 
filter(String, Object) - Method in interface ome.util.Filter
 
filter(String, Filterable) - Method in class ome.util.ModelMapper
 
filter(String, Collection) - Method in class ome.util.ModelMapper
 
filter(String, Map) - Method in class ome.util.ModelMapper
 
filter(String, Object) - Method in class ome.util.RdfPrinter
 
filter(String, Filterable) - Method in class ome.util.RdfPrinter
 
filter(String, Collection) - Method in class ome.util.RdfPrinter
 
Filter.Details - Class in ome.model.acquisition
 
Filterable - Interface in ome.util
marks objects which can be filtered using {see FIXME }.
FilterAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterAnnotationLink() - Constructor for class ome.model.annotations.FilterAnnotationLink
 
FilterAnnotationLink(Long) - Constructor for class ome.model.annotations.FilterAnnotationLink
 
FilterAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FilterAnnotationLink
Main constructor.
FilterAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FilterAnnotationLink
 
FilterAnnotationLink.Details - Class in ome.model.annotations
 
filteredSet() - Method in class ome.model.internal.Details
copy of the current collection of filtered names.
filteredSize() - Method in class ome.model.internal.Details
the count of collections which were filtered.
filterFileIdsByRepo(String, List<Long>) - Method in interface ome.util.SqlAction
Find the original file IDs among those given that are in the given repository.
filterFileIdsByRepo(String, List<Long>) - Method in class ome.util.SqlAction.Impl
 
FilterSet - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterSet() - Constructor for class ome.model.acquisition.FilterSet
 
FilterSet(Long) - Constructor for class ome.model.acquisition.FilterSet
 
FilterSet(Long, boolean) - Constructor for class ome.model.acquisition.FilterSet
Main constructor.
FilterSet(Instrument) - Constructor for class ome.model.acquisition.FilterSet
 
filterSet - Variable in class ome.model.acquisition.Instrument
 
FILTERSET - Static variable in class ome.model.acquisition.Instrument
 
filterSet - Variable in class ome.model.acquisition.OTF
 
FILTERSET - Static variable in class ome.model.acquisition.OTF
 
filterSet - Variable in class ome.model.core.LogicalChannel
 
FILTERSET - Static variable in class ome.model.core.LogicalChannel
 
FilterSet.Details - Class in ome.model.acquisition
 
FilterSetEmissionFilterLink - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterSetEmissionFilterLink() - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
 
FilterSetEmissionFilterLink(Long) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
 
FilterSetEmissionFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
Main constructor.
FilterSetEmissionFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.FilterSetEmissionFilterLink
 
FilterSetEmissionFilterLink.Details - Class in ome.model.acquisition
 
FilterSetExcitationFilterLink - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FilterSetExcitationFilterLink() - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
 
FilterSetExcitationFilterLink(Long) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
 
FilterSetExcitationFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
Main constructor.
FilterSetExcitationFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.FilterSetExcitationFilterLink
 
FilterSetExcitationFilterLink.Details - Class in ome.model.acquisition
 
FilterType - Class in ome.model.enums
 
FilterType() - Constructor for class ome.model.enums.FilterType
 
FilterType(Long) - Constructor for class ome.model.enums.FilterType
 
FilterType(Long, boolean) - Constructor for class ome.model.enums.FilterType
Main constructor.
FilterType(String) - Constructor for class ome.model.enums.FilterType
 
FilterType.Details - Class in ome.model.enums
 
filterWheel - Variable in class ome.model.acquisition.Filter
 
FILTERWHEEL - Static variable in class ome.model.acquisition.Filter
 
findAnnotationAnnotationLink(Annotation) - Method in class ome.model.annotations.Annotation
find all ome.model.annotations.AnnotationAnnotationLink which have the argument as their child.
findChannelAnnotationLink(Annotation) - Method in class ome.model.core.Channel
find all ome.model.annotations.ChannelAnnotationLink which have the argument as their child.
findClass(Class) - Method in class ome.util.ModelMapper
 
findCollection(Collection) - Method in class ome.util.ModelMapper
 
findCollectionTarget(Object) - Method in class ome.util.ModelMapper
extension point which subclasses can override to better map the values of collections and maps.
findDatasetAnnotationLink(Annotation) - Method in class ome.model.containers.Dataset
find all ome.model.annotations.DatasetAnnotationLink which have the argument as their child.
findDatasetImageLink(Image) - Method in class ome.model.containers.Dataset
find all ome.model.containers.DatasetImageLink which have the argument as their child.
findDatasetImageLink(Dataset) - Method in class ome.model.core.Image
find all ome.model.containers.DatasetImageLink which have the argument as their parent.
findDetectorAnnotationLink(Annotation) - Method in class ome.model.acquisition.Detector
find all ome.model.annotations.DetectorAnnotationLink which have the argument as their child.
findDichroicAnnotationLink(Annotation) - Method in class ome.model.acquisition.Dichroic
find all ome.model.annotations.DichroicAnnotationLink which have the argument as their child.
findExperimenterAnnotationLink(Annotation) - Method in class ome.model.meta.Experimenter
find all ome.model.annotations.ExperimenterAnnotationLink which have the argument as their child.
findExperimenterGroupAnnotationLink(Annotation) - Method in class ome.model.meta.ExperimenterGroup
find all ome.model.annotations.ExperimenterGroupAnnotationLink which have the argument as their child.
findFilesetAnnotationLink(Annotation) - Method in class ome.model.fs.Fileset
find all ome.model.annotations.FilesetAnnotationLink which have the argument as their child.
findFilesetJobLink(Job) - Method in class ome.model.fs.Fileset
find all ome.model.fs.FilesetJobLink which have the argument as their child.
findFilterAnnotationLink(Annotation) - Method in class ome.model.acquisition.Filter
find all ome.model.annotations.FilterAnnotationLink which have the argument as their child.
findFilterSetEmissionFilterLink(FilterSet) - Method in class ome.model.acquisition.Filter
find all ome.model.acquisition.FilterSetEmissionFilterLink which have the argument as their parent.
findFilterSetEmissionFilterLink(Filter) - Method in class ome.model.acquisition.FilterSet
find all ome.model.acquisition.FilterSetEmissionFilterLink which have the argument as their child.
findFilterSetExcitationFilterLink(FilterSet) - Method in class ome.model.acquisition.Filter
find all ome.model.acquisition.FilterSetExcitationFilterLink which have the argument as their parent.
findFilterSetExcitationFilterLink(Filter) - Method in class ome.model.acquisition.FilterSet
find all ome.model.acquisition.FilterSetExcitationFilterLink which have the argument as their child.
findFolderAnnotationLink(Annotation) - Method in class ome.model.containers.Folder
find all ome.model.annotations.FolderAnnotationLink which have the argument as their child.
findFolderImageLink(Image) - Method in class ome.model.containers.Folder
find all ome.model.containers.FolderImageLink which have the argument as their child.
findFolderImageLink(Folder) - Method in class ome.model.core.Image
find all ome.model.containers.FolderImageLink which have the argument as their parent.
findFolderRoiLink(Roi) - Method in class ome.model.containers.Folder
find all ome.model.containers.FolderRoiLink which have the argument as their child.
findFolderRoiLink(Folder) - Method in class ome.model.roi.Roi
find all ome.model.containers.FolderRoiLink which have the argument as their parent.
findGroupExperimenterMap(ExperimenterGroup) - Method in class ome.model.meta.Experimenter
find all ome.model.meta.GroupExperimenterMap which have the argument as their parent.
findGroupExperimenterMap(Experimenter) - Method in class ome.model.meta.ExperimenterGroup
find all ome.model.meta.GroupExperimenterMap which have the argument as their child.
findImageAnnotationLink(Annotation) - Method in class ome.model.core.Image
find all ome.model.annotations.ImageAnnotationLink which have the argument as their child.
findInstrumentAnnotationLink(Annotation) - Method in class ome.model.acquisition.Instrument
find all ome.model.annotations.InstrumentAnnotationLink which have the argument as their child.
findJobOriginalFileLink(OriginalFile) - Method in class ome.model.jobs.Job
find all ome.model.jobs.JobOriginalFileLink which have the argument as their child.
findKeyTarget(Object) - Method in class ome.util.ModelMapper
extension point which subclasses can override to better map the keys of maps.
findLightPathAnnotationLink(Annotation) - Method in class ome.model.acquisition.LightPath
find all ome.model.annotations.LightPathAnnotationLink which have the argument as their child.
findLightPathEmissionFilterLink(Filter) - Method in class ome.model.acquisition.LightPath
find all ome.model.acquisition.LightPathEmissionFilterLink which have the argument as their child.
findLightPathExcitationFilterLink(Filter) - Method in class ome.model.acquisition.LightPath
find all ome.model.acquisition.LightPathExcitationFilterLink which have the argument as their child.
findLightSourceAnnotationLink(Annotation) - Method in class ome.model.acquisition.LightSource
find all ome.model.annotations.LightSourceAnnotationLink which have the argument as their child.
findMap(Map) - Method in class ome.util.ModelMapper
 
findNamespaceAnnotationLink(Annotation) - Method in class ome.model.meta.Namespace
find all ome.model.annotations.NamespaceAnnotationLink which have the argument as their child.
findNodeAnnotationLink(Annotation) - Method in class ome.model.meta.Node
find all ome.model.annotations.NodeAnnotationLink which have the argument as their child.
findObjectiveAnnotationLink(Annotation) - Method in class ome.model.acquisition.Objective
find all ome.model.annotations.ObjectiveAnnotationLink which have the argument as their child.
findOldAdminPrivileges() - Method in interface ome.util.SqlAction
Find the completed transactions among the current light administrator privileges.
findOldAdminPrivileges() - Method in class ome.util.SqlAction.Impl
 
findOriginalFileAnnotationLink(Annotation) - Method in class ome.model.core.OriginalFile
find all ome.model.annotations.OriginalFileAnnotationLink which have the argument as their child.
findPixelsOriginalFileMap(Pixels) - Method in class ome.model.core.OriginalFile
find all ome.model.core.PixelsOriginalFileMap which have the argument as their child.
findPixelsOriginalFileMap(OriginalFile) - Method in class ome.model.core.Pixels
find all ome.model.core.PixelsOriginalFileMap which have the argument as their parent.
findPlaneInfoAnnotationLink(Annotation) - Method in class ome.model.core.PlaneInfo
find all ome.model.annotations.PlaneInfoAnnotationLink which have the argument as their child.
findPlateAcquisitionAnnotationLink(Annotation) - Method in class ome.model.screen.PlateAcquisition
find all ome.model.annotations.PlateAcquisitionAnnotationLink which have the argument as their child.
findPlateAnnotationLink(Annotation) - Method in class ome.model.screen.Plate
find all ome.model.annotations.PlateAnnotationLink which have the argument as their child.
findProjectAnnotationLink(Annotation) - Method in class ome.model.containers.Project
find all ome.model.annotations.ProjectAnnotationLink which have the argument as their child.
findProjectDatasetLink(Project) - Method in class ome.model.containers.Dataset
find all ome.model.containers.ProjectDatasetLink which have the argument as their parent.
findProjectDatasetLink(Dataset) - Method in class ome.model.containers.Project
find all ome.model.containers.ProjectDatasetLink which have the argument as their child.
findReagentAnnotationLink(Annotation) - Method in class ome.model.screen.Reagent
find all ome.model.annotations.ReagentAnnotationLink which have the argument as their child.
findRepoDeleteLogs(SqlAction.DeleteLog) - Method in interface ome.util.SqlAction
Find all SqlAction.DeleteLog entries which match all of the non-null fields provided in the template.
findRepoDeleteLogs(SqlAction.DeleteLog) - Method in class ome.util.SqlAction.Impl
 
findRepoFile(String, String, String) - Method in interface ome.util.SqlAction
findRepoFile(String, String, String, String) - Method in interface ome.util.SqlAction
findRepoFile(String, String, String, Set<String>) - Method in interface ome.util.SqlAction
Lookup the id of an OriginalFile in a given repository or return null if none is found.
findRepoFile(String, String, String) - Method in class ome.util.SqlAction.Impl
 
findRepoFile(String, String, String, String) - Method in class ome.util.SqlAction.Impl
 
findRepoFile(String, String, String, Set<String>) - Method in class ome.util.SqlAction.Impl
 
findRepoFilePath(String, long) - Method in interface ome.util.SqlAction
 
findRepoFilePath(String, long) - Method in class ome.util.SqlAction.Impl
 
findRepoFiles(String, String, List<String>, Set<String>) - Method in interface ome.util.SqlAction
Like SqlAction.findRepoFile(String, String, String, Set), but queries in bulk and returns a map for the found IDs.
findRepoFiles(String, String) - Method in interface ome.util.SqlAction
Return a list of original file ids that all have a path value matching the passed dirname in the given repository.
findRepoFiles(String, String, List<String>, Set<String>) - Method in class ome.util.SqlAction.Impl
 
findRepoFiles(String, String) - Method in class ome.util.SqlAction.Impl
 
findRepoImageFromPixels(long) - Method in class ome.util.actions.PostgresSqlAction
 
findRepoImageFromPixels(long) - Method in interface ome.util.SqlAction
 
findRepoPixels(String, String, String) - Method in class ome.util.actions.PostgresSqlAction
 
findRepoPixels(String, String, String) - Method in interface ome.util.SqlAction
 
findRepoRootPath(String) - Method in interface ome.util.SqlAction
Find the path of the repository root.
findRepoRootPath(String) - Method in class ome.util.SqlAction.Impl
 
findRoiAnnotationLink(Annotation) - Method in class ome.model.roi.Roi
find all ome.model.annotations.RoiAnnotationLink which have the argument as their child.
findScreenAnnotationLink(Annotation) - Method in class ome.model.screen.Screen
find all ome.model.annotations.ScreenAnnotationLink which have the argument as their child.
findScreenPlateLink(Screen) - Method in class ome.model.screen.Plate
find all ome.model.screen.ScreenPlateLink which have the argument as their parent.
findScreenPlateLink(Plate) - Method in class ome.model.screen.Screen
find all ome.model.screen.ScreenPlateLink which have the argument as their child.
findSessionAnnotationLink(Annotation) - Method in class ome.model.meta.Session
find all ome.model.annotations.SessionAnnotationLink which have the argument as their child.
findShapeAnnotationLink(Annotation) - Method in class ome.model.roi.Shape
find all ome.model.annotations.ShapeAnnotationLink which have the argument as their child.
findTarget(Object) - Method in class ome.util.ModelMapper
known immutables are return unchanged.
findWellAnnotationLink(Annotation) - Method in class ome.model.screen.Well
find all ome.model.annotations.WellAnnotationLink which have the argument as their child.
findWellReagentLink(Well) - Method in class ome.model.screen.Reagent
find all ome.model.screen.WellReagentLink which have the argument as their parent.
findWellReagentLink(Reagent) - Method in class ome.model.screen.Well
find all ome.model.screen.WellReagentLink which have the argument as their child.
finished - Variable in class ome.model.jobs.Job
 
FINISHED - Static variable in class ome.model.jobs.Job
 
finished - Variable in class ome.model.meta.DBPatch
 
FINISHED - Static variable in class ome.model.meta.DBPatch
 
firstName - Variable in class ome.model.meta.Experimenter
 
FIRSTNAME - Static variable in class ome.model.meta.Experimenter
 
FLOAT - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
fluor - Variable in class ome.model.core.LogicalChannel
 
FLUOR - Static variable in class ome.model.core.LogicalChannel
 
Folder - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Folder() - Constructor for class ome.model.containers.Folder
 
Folder(Long) - Constructor for class ome.model.containers.Folder
 
Folder(Long, boolean) - Constructor for class ome.model.containers.Folder
Main constructor.
Folder(String) - Constructor for class ome.model.containers.Folder
 
Folder.Details - Class in ome.model.containers
 
FolderAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FolderAnnotationLink() - Constructor for class ome.model.annotations.FolderAnnotationLink
 
FolderAnnotationLink(Long) - Constructor for class ome.model.annotations.FolderAnnotationLink
 
FolderAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.FolderAnnotationLink
Main constructor.
FolderAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.FolderAnnotationLink
 
FolderAnnotationLink.Details - Class in ome.model.annotations
 
FolderImageLink - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FolderImageLink() - Constructor for class ome.model.containers.FolderImageLink
 
FolderImageLink(Long) - Constructor for class ome.model.containers.FolderImageLink
 
FolderImageLink(Long, boolean) - Constructor for class ome.model.containers.FolderImageLink
Main constructor.
FolderImageLink(IObject, IObject) - Constructor for class ome.model.containers.FolderImageLink
 
FolderImageLink.Details - Class in ome.model.containers
 
folderLinks - Variable in class ome.model.core.Image
 
FOLDERLINKS - Static variable in class ome.model.core.Image
 
folderLinks - Variable in class ome.model.roi.Roi
 
FOLDERLINKS - Static variable in class ome.model.roi.Roi
 
FOLDERLINKSCOUNTPEROWNER - Static variable in class ome.model.core.Image
 
FOLDERLINKSCOUNTPEROWNER - Static variable in class ome.model.roi.Roi
 
FolderRoiLink - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
FolderRoiLink() - Constructor for class ome.model.containers.FolderRoiLink
 
FolderRoiLink(Long) - Constructor for class ome.model.containers.FolderRoiLink
 
FolderRoiLink(Long, boolean) - Constructor for class ome.model.containers.FolderRoiLink
Main constructor.
FolderRoiLink(IObject, IObject) - Constructor for class ome.model.containers.FolderRoiLink
 
FolderRoiLink.Details - Class in ome.model.containers
 
fontFamily - Variable in class ome.model.roi.Shape
 
FONTFAMILY - Static variable in class ome.model.roi.Shape
 
fontSize - Variable in class ome.model.roi.Shape
 
FONTSIZE - Static variable in class ome.model.roi.Shape
 
fontStyle - Variable in class ome.model.roi.Shape
 
FONTSTYLE - Static variable in class ome.model.roi.Shape
 
format - Variable in class ome.model.core.Image
 
FORMAT - Static variable in class ome.model.core.Image
 
Format - Class in ome.model.enums
 
Format() - Constructor for class ome.model.enums.Format
 
Format(Long) - Constructor for class ome.model.enums.Format
 
Format(Long, boolean) - Constructor for class ome.model.enums.Format
Main constructor.
Format(String) - Constructor for class ome.model.enums.Format
 
Format.Details - Class in ome.model.enums
 
Frequency - Class in ome.model.units
class storing both a Frequency and a unit for that Frequency (e.g.
Frequency() - Constructor for class ome.model.units.Frequency
Deprecated.
Frequency(double, String) - Constructor for class ome.model.units.Frequency
 
Frequency(double, UnitsFrequency) - Constructor for class ome.model.units.Frequency
 
Frequency(double, Unit<Frequency>) - Constructor for class ome.model.units.Frequency
 
Frequency(Frequency) - Constructor for class ome.model.units.Frequency
 
frequencyMultiplication - Variable in class ome.model.acquisition.Laser
 
FREQUENCYMULTIPLICATION - Static variable in class ome.model.acquisition.Laser
 
fromdbvalue(String) - Method in enum ome.model.units.UNITS
Perform the reverse lookup from todbvalue(Object) converting the DB's enums which contain invalid characters to the upper-cased CODE-based enums used elsewhere.

G

gain - Variable in class ome.model.acquisition.Detector
 
GAIN - Static variable in class ome.model.acquisition.Detector
 
gain - Variable in class ome.model.acquisition.DetectorSettings
 
GAIN - Static variable in class ome.model.acquisition.DetectorSettings
 
generate(SessionImplementor, Object) - Method in class ome.util.TableIdGenerator
 
GenericEnumType<E extends java.lang.Enum<E>> - Class in ome.model.units
http://octagen.at/2014/10/postgresql-custom-data-types-enum-in-hibernate/
GenericEnumType() - Constructor for class ome.model.units.GenericEnumType
 
GenericExcitationSource - Class in ome.model.acquisition
 
GenericExcitationSource() - Constructor for class ome.model.acquisition.GenericExcitationSource
 
GenericExcitationSource(Long) - Constructor for class ome.model.acquisition.GenericExcitationSource
 
GenericExcitationSource(Long, boolean) - Constructor for class ome.model.acquisition.GenericExcitationSource
Main constructor.
get(String) - Method in class ome.parameters.Parameters
lookup a QueryParameter by name.
getA00() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a00 (java.lang.Double)
getA01() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a01 (java.lang.Double)
getA02() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a02 (java.lang.Double)
getA10() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a10 (java.lang.Double)
getA11() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a11 (java.lang.Double)
getA12() - Method in class ome.model.roi.AffineTransform
Simple field ome.model.roi.AffineTransform.a12 (java.lang.Double)
getAcquisitionDate() - Method in class ome.model.core.Image
Simple field ome.model.core.Image.acquisitionDate (java.sql.Timestamp)
getAction() - Method in class ome.model.meta.EventLog
Simple field ome.model.meta.EventLog.action (java.lang.String)
getActive() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.active (java.lang.Boolean)
getActive() - Method in class ome.model.display.ProjectionDef
Simple field ome.model.display.ProjectionDef.active (java.lang.Boolean)
getActive() - Method in class ome.model.meta.Share
Simple field ome.model.meta.Share.active (java.lang.Boolean)
getAirPressure() - Method in class ome.model.acquisition.ImagingEnvironment
Enum-mapped unit-based field ome.model.acquisition.ImagingEnvironment.airPressure (ome.model.units.Pressure)
getAlpha() - Method in class ome.model.core.Channel
Simple field ome.model.core.Channel.alpha (java.lang.Integer)
getAlpha() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.alpha (java.lang.Integer)
getAlpha() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.alpha (java.lang.Integer)
getAmplificationGain() - Method in class ome.model.acquisition.Detector
Simple field ome.model.acquisition.Detector.amplificationGain (java.lang.Double)
getAnnotationLinks() - Method in class ome.model.acquisition.Detector
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Dichroic
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Filter
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Instrument
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.LightPath
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.LightSource
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.acquisition.Objective
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.annotations.Annotation
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.containers.Dataset
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.containers.Folder
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.containers.Project
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.Channel
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.Image
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.OriginalFile
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.core.PlaneInfo
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.fs.Fileset
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Experimenter
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Namespace
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Node
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.meta.Session
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.roi.Roi
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.roi.Shape
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Plate
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Reagent
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Screen
returns annotationLinks .
getAnnotationLinks() - Method in class ome.model.screen.Well
returns annotationLinks .
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Detector
If fetched, returns the count(*) of ome.model.annotations.DetectorAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Dichroic
If fetched, returns the count(*) of ome.model.annotations.DichroicAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Filter
If fetched, returns the count(*) of ome.model.annotations.FilterAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Instrument
If fetched, returns the count(*) of ome.model.annotations.InstrumentAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.LightPath
If fetched, returns the count(*) of ome.model.annotations.LightPathAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.LightSource
If fetched, returns the count(*) of ome.model.annotations.LightSourceAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.acquisition.Objective
If fetched, returns the count(*) of ome.model.annotations.ObjectiveAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.annotations.Annotation
If fetched, returns the count(*) of ome.model.annotations.AnnotationAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Dataset
If fetched, returns the count(*) of ome.model.annotations.DatasetAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Folder
If fetched, returns the count(*) of ome.model.annotations.FolderAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.containers.Project
If fetched, returns the count(*) of ome.model.annotations.ProjectAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.Channel
If fetched, returns the count(*) of ome.model.annotations.ChannelAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.Image
If fetched, returns the count(*) of ome.model.annotations.ImageAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.OriginalFile
If fetched, returns the count(*) of ome.model.annotations.OriginalFileAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.core.PlaneInfo
If fetched, returns the count(*) of ome.model.annotations.PlaneInfoAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.fs.Fileset
If fetched, returns the count(*) of ome.model.annotations.FilesetAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Experimenter
If fetched, returns the count(*) of ome.model.annotations.ExperimenterAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.ExperimenterGroup
If fetched, returns the count(*) of ome.model.annotations.ExperimenterGroupAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Namespace
If fetched, returns the count(*) of ome.model.annotations.NamespaceAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Node
If fetched, returns the count(*) of ome.model.annotations.NodeAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.meta.Session
If fetched, returns the count(*) of ome.model.annotations.SessionAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.roi.Roi
If fetched, returns the count(*) of ome.model.annotations.RoiAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.roi.Shape
If fetched, returns the count(*) of ome.model.annotations.ShapeAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Plate
If fetched, returns the count(*) of ome.model.annotations.PlateAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.PlateAcquisition
If fetched, returns the count(*) of ome.model.annotations.PlateAcquisitionAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Reagent
If fetched, returns the count(*) of ome.model.annotations.ReagentAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Screen
If fetched, returns the count(*) of ome.model.annotations.ScreenAnnotationLink that a user has.
getAnnotationLinksCountPerOwner() - Method in class ome.model.screen.Well
If fetched, returns the count(*) of ome.model.annotations.WellAnnotationLink that a user has.
getArchived() - Method in class ome.model.core.Image
Simple field ome.model.core.Image.archived (java.lang.Boolean)
getAtime() - Method in class ome.model.core.OriginalFile
Simple field ome.model.core.OriginalFile.atime (java.sql.Timestamp)
getAttenuation() - Method in class ome.model.acquisition.LightSettings
Simple field ome.model.acquisition.LightSettings.attenuation (java.lang.Double)
getAxis() - Method in class ome.model.display.ProjectionDef
Many-to-one field ome.model.display.ProjectionDef.axis (ome.model.enums.ProjectionAxis)
getBinning() - Method in class ome.model.acquisition.DetectorSettings
Many-to-one field ome.model.acquisition.DetectorSettings.binning (ome.model.enums.Binning)
getBitDepth(String) - Static method in class ome.util.PixelData
Retrieves the bit width of a particular PixelsType.
getBitResolution() - Method in class ome.model.display.QuantumDef
Simple field ome.model.display.QuantumDef.bitResolution (java.lang.Integer)
getBitSize() - Method in class ome.model.enums.PixelsType
Simple field ome.model.enums.PixelsType.bitSize (java.lang.Integer)
getBlue() - Method in class ome.model.core.Channel
Simple field ome.model.core.Channel.blue (java.lang.Integer)
getBlue() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.blue (java.lang.Integer)
getBlue() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.blue (java.lang.Integer)
getBoolValue() - Method in class ome.model.annotations.BooleanAnnotation
Simple field ome.model.annotations.BooleanAnnotation.boolValue (java.lang.Boolean)
getBytes() - Method in class ome.model.roi.Mask
Simple field ome.model.roi.Mask.bytes (byte[])
getCalibratedMagnification() - Method in class ome.model.acquisition.Objective
Simple field ome.model.acquisition.Objective.calibratedMagnification (java.lang.Double)
getCdEnd() - Method in class ome.model.display.QuantumDef
Simple field ome.model.display.QuantumDef.cdEnd (java.lang.Integer)
getCdStart() - Method in class ome.model.display.QuantumDef
Simple field ome.model.display.QuantumDef.cdStart (java.lang.Integer)
getChannel(int) - Method in class ome.model.core.Pixels
Gets the ome.model.core.Channel at the given index.
getChannelBinding() - Method in class ome.model.display.CodomainMapContext
Many-to-one field ome.model.display.CodomainMapContext.channelBinding (ome.model.display.ChannelBinding)
getChannelBinding(int) - Method in class ome.model.display.RenderingDef
Gets the ome.model.display.ChannelBinding at the given index.
getChannels() - Method in class ome.model.core.LogicalChannel
returns channels .
getChannels() - Method in class ome.model.core.Pixels
returns channels .
getChild() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
Many-to-one field ome.model.acquisition.FilterSetEmissionFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
Many-to-one field ome.model.acquisition.FilterSetExcitationFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
Many-to-one field ome.model.acquisition.LightPathEmissionFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
Many-to-one field ome.model.acquisition.LightPathExcitationFilterLink.child (ome.model.acquisition.Filter)
getChild() - Method in class ome.model.annotations.AnnotationAnnotationLink
Many-to-one field ome.model.annotations.AnnotationAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ChannelAnnotationLink
Many-to-one field ome.model.annotations.ChannelAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.DatasetAnnotationLink
Many-to-one field ome.model.annotations.DatasetAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.DetectorAnnotationLink
Many-to-one field ome.model.annotations.DetectorAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.DichroicAnnotationLink
Many-to-one field ome.model.annotations.DichroicAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ExperimenterAnnotationLink
Many-to-one field ome.model.annotations.ExperimenterAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
Many-to-one field ome.model.annotations.ExperimenterGroupAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.FilesetAnnotationLink
Many-to-one field ome.model.annotations.FilesetAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.FilterAnnotationLink
Many-to-one field ome.model.annotations.FilterAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.FolderAnnotationLink
Many-to-one field ome.model.annotations.FolderAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ImageAnnotationLink
Many-to-one field ome.model.annotations.ImageAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.InstrumentAnnotationLink
Many-to-one field ome.model.annotations.InstrumentAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.LightPathAnnotationLink
Many-to-one field ome.model.annotations.LightPathAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.LightSourceAnnotationLink
Many-to-one field ome.model.annotations.LightSourceAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.NamespaceAnnotationLink
Many-to-one field ome.model.annotations.NamespaceAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.NodeAnnotationLink
Many-to-one field ome.model.annotations.NodeAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ObjectiveAnnotationLink
Many-to-one field ome.model.annotations.ObjectiveAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.OriginalFileAnnotationLink
Many-to-one field ome.model.annotations.OriginalFileAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
Many-to-one field ome.model.annotations.PlaneInfoAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
Many-to-one field ome.model.annotations.PlateAcquisitionAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.PlateAnnotationLink
Many-to-one field ome.model.annotations.PlateAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ProjectAnnotationLink
Many-to-one field ome.model.annotations.ProjectAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ReagentAnnotationLink
Many-to-one field ome.model.annotations.ReagentAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.RoiAnnotationLink
Many-to-one field ome.model.annotations.RoiAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ScreenAnnotationLink
Many-to-one field ome.model.annotations.ScreenAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.SessionAnnotationLink
Many-to-one field ome.model.annotations.SessionAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.ShapeAnnotationLink
Many-to-one field ome.model.annotations.ShapeAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.annotations.WellAnnotationLink
Many-to-one field ome.model.annotations.WellAnnotationLink.child (ome.model.annotations.Annotation)
getChild() - Method in class ome.model.containers.DatasetImageLink
Many-to-one field ome.model.containers.DatasetImageLink.child (ome.model.core.Image)
getChild() - Method in class ome.model.containers.FolderImageLink
Many-to-one field ome.model.containers.FolderImageLink.child (ome.model.core.Image)
getChild() - Method in class ome.model.containers.FolderRoiLink
Many-to-one field ome.model.containers.FolderRoiLink.child (ome.model.roi.Roi)
getChild() - Method in class ome.model.containers.ProjectDatasetLink
Many-to-one field ome.model.containers.ProjectDatasetLink.child (ome.model.containers.Dataset)
getChild() - Method in class ome.model.core.PixelsOriginalFileMap
Many-to-one field ome.model.core.PixelsOriginalFileMap.child (ome.model.core.Pixels)
getChild() - Method in class ome.model.fs.FilesetJobLink
Many-to-one field ome.model.fs.FilesetJobLink.child (ome.model.jobs.Job)
getChild() - Method in interface ome.model.ILink
 
getChild() - Method in class ome.model.jobs.JobOriginalFileLink
Many-to-one field ome.model.jobs.JobOriginalFileLink.child (ome.model.core.OriginalFile)
getChild() - Method in class ome.model.meta.GroupExperimenterMap
Many-to-one field ome.model.meta.GroupExperimenterMap.child (ome.model.meta.Experimenter)
getChild() - Method in class ome.model.meta.ShareMember
Many-to-one field ome.model.meta.ShareMember.child (ome.model.meta.Experimenter)
getChild() - Method in class ome.model.screen.ScreenPlateLink
Many-to-one field ome.model.screen.ScreenPlateLink.child (ome.model.screen.Plate)
getChild() - Method in class ome.model.screen.WellReagentLink
Many-to-one field ome.model.screen.WellReagentLink.child (ome.model.screen.Reagent)
getChildFolders() - Method in class ome.model.containers.Folder
returns childFolders .
getClientPath() - Method in class ome.model.fs.FilesetEntry
Simple field ome.model.fs.FilesetEntry.clientPath (java.lang.String)
getClosed() - Method in class ome.model.meta.Session
Simple field ome.model.meta.Session.closed (java.sql.Timestamp)
getCo2percent() - Method in class ome.model.acquisition.ImagingEnvironment
Simple field ome.model.acquisition.ImagingEnvironment.co2percent (java.lang.Double)
getCodomainMapContext(int) - Method in class ome.model.display.ChannelBinding
Gets the ome.model.display.CodomainMapContext at the given index.
getCoefficient() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.coefficient (java.lang.Double)
getColumn() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.column (java.lang.Integer)
getColumnNamingConvention() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.columnNamingConvention (java.lang.String)
getColumns() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.columns (java.lang.Integer)
getCompression() - Method in class ome.model.display.RenderingDef
Simple field ome.model.display.RenderingDef.compression (java.lang.Double)
getConfig() - Method in class ome.model.meta.Experimenter
 
getConfig() - Method in class ome.model.meta.ExperimenterGroup
 
getConn() - Method in class ome.model.meta.Node
Simple field ome.model.meta.Node.conn (java.lang.String)
getConstant() - Method in class ome.model.display.PlaneSlicingContext
Simple field ome.model.display.PlaneSlicingContext.constant (java.lang.Boolean)
getContainingEvent() - Method in class ome.model.meta.Event
Many-to-one field ome.model.meta.Event.containingEvent (ome.model.meta.Event)
getContext() - Method in class ome.model.internal.Details
reference to the entity which this Details is contained in.
getContrastMethod() - Method in class ome.model.core.LogicalChannel
Many-to-one field ome.model.core.LogicalChannel.contrastMethod (ome.model.enums.ContrastMethod)
getCorrection() - Method in class ome.model.acquisition.Objective
Many-to-one field ome.model.acquisition.Objective.correction (ome.model.enums.Correction)
getCorrectionCollar() - Method in class ome.model.acquisition.ObjectiveSettings
Simple field ome.model.acquisition.ObjectiveSettings.correctionCollar (java.lang.Double)
getCreationEvent() - Method in class ome.model.acquisition.Detector.Details
 
getCreationEvent() - Method in class ome.model.acquisition.DetectorSettings.Details
 
getCreationEvent() - Method in class ome.model.acquisition.Dichroic.Details
 
getCreationEvent() - Method in class ome.model.acquisition.Filter.Details
 
getCreationEvent() - Method in class ome.model.acquisition.FilterSet.Details
 
getCreationEvent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
getCreationEvent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
getCreationEvent() - Method in class ome.model.acquisition.ImagingEnvironment.Details
 
getCreationEvent() - Method in class ome.model.acquisition.Instrument.Details
 
getCreationEvent() - Method in class ome.model.acquisition.LightPath.Details
 
getCreationEvent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
getCreationEvent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
getCreationEvent() - Method in class ome.model.acquisition.LightSettings.Details
 
getCreationEvent() - Method in class ome.model.acquisition.LightSource.Details
 
getCreationEvent() - Method in class ome.model.acquisition.Microscope.Details
 
getCreationEvent() - Method in class ome.model.acquisition.Objective.Details
 
getCreationEvent() - Method in class ome.model.acquisition.ObjectiveSettings.Details
 
getCreationEvent() - Method in class ome.model.acquisition.OTF.Details
 
getCreationEvent() - Method in class ome.model.acquisition.StageLabel.Details
 
getCreationEvent() - Method in class ome.model.acquisition.TransmittanceRange.Details
 
getCreationEvent() - Method in class ome.model.annotations.Annotation.Details
 
getCreationEvent() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.FilterAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.FolderAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ImageAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.NodeAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.PlateAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.RoiAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.SessionAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.annotations.WellAnnotationLink.Details
 
getCreationEvent() - Method in class ome.model.containers.Dataset.Details
 
getCreationEvent() - Method in class ome.model.containers.DatasetImageLink.Details
 
getCreationEvent() - Method in class ome.model.containers.Folder.Details
 
getCreationEvent() - Method in class ome.model.containers.FolderImageLink.Details
 
getCreationEvent() - Method in class ome.model.containers.FolderRoiLink.Details
 
getCreationEvent() - Method in class ome.model.containers.Project.Details
 
getCreationEvent() - Method in class ome.model.containers.ProjectDatasetLink.Details
 
getCreationEvent() - Method in class ome.model.core.Channel.Details
 
getCreationEvent() - Method in class ome.model.core.Image.Details
 
getCreationEvent() - Method in class ome.model.core.LogicalChannel.Details
 
getCreationEvent() - Method in class ome.model.core.OriginalFile.Details
 
getCreationEvent() - Method in class ome.model.core.Pixels.Details
 
getCreationEvent() - Method in class ome.model.core.PixelsOriginalFileMap.Details
 
getCreationEvent() - Method in class ome.model.core.PlaneInfo.Details
 
getCreationEvent() - Method in class ome.model.display.ChannelBinding.Details
 
getCreationEvent() - Method in class ome.model.display.CodomainMapContext.Details
 
getCreationEvent() - Method in class ome.model.display.ProjectionDef.Details
 
getCreationEvent() - Method in class ome.model.display.QuantumDef.Details
 
getCreationEvent() - Method in class ome.model.display.RenderingDef.Details
 
getCreationEvent() - Method in class ome.model.display.Thumbnail.Details
 
getCreationEvent() - Method in class ome.model.experiment.Experiment.Details
 
getCreationEvent() - Method in class ome.model.experiment.MicrobeamManipulation.Details
 
getCreationEvent() - Method in class ome.model.fs.Fileset.Details
 
getCreationEvent() - Method in class ome.model.fs.FilesetEntry.Details
 
getCreationEvent() - Method in class ome.model.fs.FilesetJobLink.Details
 
getCreationEvent() - Method in interface ome.model.IDetails
 
getCreationEvent() - Method in class ome.model.internal.Details
 
getCreationEvent() - Method in class ome.model.internal.Link.Details
 
getCreationEvent() - Method in class ome.model.jobs.Job.Details
 
getCreationEvent() - Method in class ome.model.jobs.JobOriginalFileLink.Details
 
getCreationEvent() - Method in class ome.model.meta.ExternalInfo.Details
 
getCreationEvent() - Method in class ome.model.roi.AffineTransform.Details
 
getCreationEvent() - Method in class ome.model.roi.Roi.Details
 
getCreationEvent() - Method in class ome.model.roi.Shape.Details
 
getCreationEvent() - Method in class ome.model.screen.Plate.Details
 
getCreationEvent() - Method in class ome.model.screen.PlateAcquisition.Details
 
getCreationEvent() - Method in class ome.model.screen.Reagent.Details
 
getCreationEvent() - Method in class ome.model.screen.Screen.Details
 
getCreationEvent() - Method in class ome.model.screen.ScreenPlateLink.Details
 
getCreationEvent() - Method in class ome.model.screen.Well.Details
 
getCreationEvent() - Method in class ome.model.screen.WellReagentLink.Details
 
getCreationEvent() - Method in class ome.model.screen.WellSample.Details
 
getCreationEvent() - Method in class ome.model.stats.StatsInfo.Details
 
getCtime() - Method in class ome.model.core.OriginalFile
Simple field ome.model.core.OriginalFile.ctime (java.sql.Timestamp)
getCurrentPatch() - Method in class ome.model.meta.DBPatch
Simple field ome.model.meta.DBPatch.currentPatch (java.lang.Integer)
getCurrentVersion() - Method in class ome.model.meta.DBPatch
Simple field ome.model.meta.DBPatch.currentVersion (java.lang.String)
getCutIn() - Method in class ome.model.acquisition.TransmittanceRange
Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutIn (ome.model.units.Length)
getCutInTolerance() - Method in class ome.model.acquisition.TransmittanceRange
Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutInTolerance (ome.model.units.Length)
getCutOut() - Method in class ome.model.acquisition.TransmittanceRange
Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutOut (ome.model.units.Length)
getCutOutTolerance() - Method in class ome.model.acquisition.TransmittanceRange
Enum-mapped unit-based field ome.model.acquisition.TransmittanceRange.cutOutTolerance (ome.model.units.Length)
getD() - Method in class ome.model.roi.Path
Deprecated.
Simple field ome.model.roi.Path.d (java.lang.String)
getData() - Method in class ome.model.meta.Share
Simple field ome.model.meta.Share.data (byte[])
getData() - Method in class ome.util.PixelData
Returns the backing buffer for the pixel data.
getDatasetLinks() - Method in class ome.model.containers.Project
returns datasetLinks .
getDatasetLinks() - Method in class ome.model.core.Image
returns datasetLinks .
getDatasetLinksCountPerOwner() - Method in class ome.model.containers.Project
If fetched, returns the count(*) of ome.model.containers.ProjectDatasetLink that a user has.
getDatasetLinksCountPerOwner() - Method in class ome.model.core.Image
If fetched, returns the count(*) of ome.model.containers.DatasetImageLink that a user has.
getDefaultEventType() - Method in class ome.model.meta.Session
Simple field ome.model.meta.Session.defaultEventType (java.lang.String)
getDefaultSample() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.defaultSample (java.lang.Integer)
getDefaultT() - Method in class ome.model.display.RenderingDef
Simple field ome.model.display.RenderingDef.defaultT (java.lang.Integer)
getDefaultZ() - Method in class ome.model.display.RenderingDef
Simple field ome.model.display.RenderingDef.defaultZ (java.lang.Integer)
getDeletedIds(String) - Method in class ome.util.actions.PostgresSqlAction
 
getDeletedIds(String) - Method in interface ome.util.SqlAction
 
getDeltaT() - Method in class ome.model.core.PlaneInfo
Enum-mapped unit-based field ome.model.core.PlaneInfo.deltaT (ome.model.units.Time)
getDescription() - Method in class ome.model.annotations.Annotation
Simple field ome.model.annotations.Annotation.description (java.lang.String)
getDescription() - Method in class ome.model.containers.Dataset
Simple field ome.model.containers.Dataset.description (java.lang.String)
getDescription() - Method in class ome.model.containers.Folder
Simple field ome.model.containers.Folder.description (java.lang.String)
getDescription() - Method in class ome.model.containers.Project
Simple field ome.model.containers.Project.description (java.lang.String)
getDescription() - Method in class ome.model.core.Image
Simple field ome.model.core.Image.description (java.lang.String)
getDescription() - Method in class ome.model.experiment.Experiment
Simple field ome.model.experiment.Experiment.description (java.lang.String)
getDescription() - Method in class ome.model.experiment.MicrobeamManipulation
Simple field ome.model.experiment.MicrobeamManipulation.description (java.lang.String)
getDescription() - Method in class ome.model.jobs.ScriptJob
Simple field ome.model.jobs.ScriptJob.description (java.lang.String)
getDescription() - Method in class ome.model.meta.ExperimenterGroup
Simple field ome.model.meta.ExperimenterGroup.description (java.lang.String)
getDescription() - Method in class ome.model.meta.Namespace
Simple field ome.model.meta.Namespace.description (java.lang.String)
getDescription() - Method in class ome.model.roi.Roi
Simple field ome.model.roi.Roi.description (java.lang.String)
getDescription() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.description (java.lang.String)
getDescription() - Method in class ome.model.screen.PlateAcquisition
Simple field ome.model.screen.PlateAcquisition.description (java.lang.String)
getDescription() - Method in class ome.model.screen.Reagent
Simple field ome.model.screen.Reagent.description (java.lang.String)
getDescription() - Method in class ome.model.screen.Screen
Simple field ome.model.screen.Screen.description (java.lang.String)
getDetails() - Method in class ome.model.acquisition.Detector
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.DetectorSettings
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.Dichroic
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.Filter
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.FilterSet
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.ImagingEnvironment
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.Instrument
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.LightPath
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.LightSettings
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.LightSource
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.Microscope
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.Objective
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.ObjectiveSettings
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.OTF
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.StageLabel
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.acquisition.TransmittanceRange
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.Annotation
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.AnnotationAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ChannelAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.DatasetAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.DetectorAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.DichroicAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ExperimenterAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.FilesetAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.FilterAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.FolderAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ImageAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.InstrumentAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.LightPathAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.LightSourceAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.NamespaceAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.NodeAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ObjectiveAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.OriginalFileAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.PlateAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ProjectAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ReagentAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.RoiAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ScreenAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.SessionAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.ShapeAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.annotations.WellAnnotationLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.Dataset
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.DatasetImageLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.Folder
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.FolderImageLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.FolderRoiLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.Project
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.containers.ProjectDatasetLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.Channel
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.Image
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.LogicalChannel
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.OriginalFile
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.Pixels
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.PixelsOriginalFileMap
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.core.PlaneInfo
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.ChannelBinding
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.CodomainMapContext
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.ProjectionDef
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.QuantumDef
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.RenderingDef
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.display.Thumbnail
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.AcquisitionMode
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.AdminPrivilege
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ArcType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Binning
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ChecksumAlgorithm
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ContrastMethod
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Correction
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.DetectorType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.DimensionOrder
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.EventType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ExperimentType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Family
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.FilamentType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.FilterType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Format
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Illumination
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Immersion
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.LaserMedium
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.LaserType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Medium
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.MicrobeamManipulationType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.MicroscopeType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.PhotometricInterpretation
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.PixelsType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ProjectionAxis
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.ProjectionType
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.Pulse
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.enums.RenderingModel
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.experiment.Experiment
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.experiment.MicrobeamManipulation
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.fs.Fileset
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.fs.FilesetEntry
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.fs.FilesetJobLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.internal.Link
The details of this object correspond to low-level system information.
getDetails() - Method in interface ome.model.IObject
Value (i.e.
getDetails() - Method in class ome.model.jobs.Job
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.jobs.JobOriginalFileLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.jobs.JobStatus
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.DBPatch
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.Event
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.EventLog
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.Experimenter
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.ExperimenterGroup
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.ExternalInfo
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.GroupExperimenterMap
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.Namespace
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.Node
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.Session
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.meta.ShareMember
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.roi.AffineTransform
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.roi.Roi
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.roi.Shape
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.Plate
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.PlateAcquisition
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.Reagent
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.Screen
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.ScreenPlateLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.Well
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.WellReagentLink
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.screen.WellSample
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.model.stats.StatsInfo
The details of this object correspond to low-level system information.
getDetails() - Method in class ome.util.PermDetails
 
getDetector() - Method in class ome.model.acquisition.DetectorSettings
Many-to-one field ome.model.acquisition.DetectorSettings.detector (ome.model.acquisition.Detector)
getDetector() - Method in class ome.model.acquisition.Instrument
returns detector .
getDetectorSettings() - Method in class ome.model.core.LogicalChannel
Many-to-one field ome.model.core.LogicalChannel.detectorSettings (ome.model.acquisition.DetectorSettings)
getDichroic() - Method in class ome.model.acquisition.FilterSet
Many-to-one field ome.model.acquisition.FilterSet.dichroic (ome.model.acquisition.Dichroic)
getDichroic() - Method in class ome.model.acquisition.Instrument
returns dichroic .
getDichroic() - Method in class ome.model.acquisition.LightPath
Many-to-one field ome.model.acquisition.LightPath.dichroic (ome.model.acquisition.Dichroic)
getDimensionOrder() - Method in class ome.model.core.Pixels
Many-to-one field ome.model.core.Pixels.dimensionOrder (ome.model.enums.DimensionOrder)
getDisplay() - Method in class ome.model.meta.Namespace
Simple field ome.model.meta.Namespace.display (java.lang.Boolean)
getDisplayName() - Method in class ome.model.meta.Namespace
Simple field ome.model.meta.Namespace.displayName (java.lang.String)
getDoubleValue() - Method in class ome.model.annotations.DoubleAnnotation
Simple field ome.model.annotations.DoubleAnnotation.doubleValue (java.lang.Double)
getDown() - Method in class ome.model.meta.Node
Simple field ome.model.meta.Node.down (java.sql.Timestamp)
getEmail() - Method in class ome.model.meta.Experimenter
Simple field ome.model.meta.Experimenter.email (java.lang.String)
getEmissionFilterLink() - Method in class ome.model.acquisition.Filter
returns emissionFilterLink .
getEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet
returns emissionFilterLink .
getEmissionFilterLink() - Method in class ome.model.acquisition.LightPath
returns emissionFilterLink .
getEmissionFilterLinkCountPerOwner() - Method in class ome.model.acquisition.Filter
If fetched, returns the count(*) of ome.model.acquisition.FilterSetEmissionFilterLink that a user has.
getEmissionFilterLinkCountPerOwner() - Method in class ome.model.acquisition.FilterSet
If fetched, returns the count(*) of ome.model.acquisition.FilterSetEmissionFilterLink that a user has.
getEmissionFilterLinkCountPerOwner() - Method in class ome.model.acquisition.LightPath
If fetched, returns the count(*) of ome.model.acquisition.LightPathEmissionFilterLink that a user has.
getEmissionWave() - Method in class ome.model.core.LogicalChannel
Enum-mapped unit-based field ome.model.core.LogicalChannel.emissionWave (ome.model.units.Length)
getEndPlane() - Method in class ome.model.display.ProjectionDef
Simple field ome.model.display.ProjectionDef.endPlane (java.lang.Integer)
getEndTime() - Method in class ome.model.screen.PlateAcquisition
Simple field ome.model.screen.PlateAcquisition.endTime (java.sql.Timestamp)
getEndTime() - Method in class ome.parameters.Parameters
 
getEntityId() - Method in class ome.model.meta.EventLog
Simple field ome.model.meta.EventLog.entityId (java.lang.Long)
getEntityId() - Method in class ome.model.meta.ExternalInfo
Simple field ome.model.meta.ExternalInfo.entityId (java.lang.Long)
getEntityType() - Method in class ome.model.meta.EventLog
Simple field ome.model.meta.EventLog.entityType (java.lang.String)
getEntityType() - Method in class ome.model.meta.ExternalInfo
Simple field ome.model.meta.ExternalInfo.entityType (java.lang.String)
getEvent() - Method in class ome.model.meta.EventLog
Many-to-one field ome.model.meta.EventLog.event (ome.model.meta.Event)
getEventLogPartitions(Collection<String>, Collection<String>, long, long) - Method in interface ome.util.SqlAction
Loads up to "limit" event logs using partioning so that only the last event log of a particular (type, id) pair is returned.
getEventLogPartitions(Collection<String>, Collection<String>, long, long) - Method in class ome.util.SqlAction.Impl
 
getEventLogPercent(String) - Method in interface ome.util.SqlAction
Returns the percent (e.g.
getEventLogPercent(String) - Method in class ome.util.SqlAction.Impl
 
getEvents() - Method in class ome.model.meta.Session
returns events .
getExcitationFilterLink() - Method in class ome.model.acquisition.Filter
returns excitationFilterLink .
getExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet
returns excitationFilterLink .
getExcitationFilterLink() - Method in class ome.model.acquisition.LightPath
returns excitationFilterLink .
getExcitationFilterLinkCountPerOwner() - Method in class ome.model.acquisition.Filter
If fetched, returns the count(*) of ome.model.acquisition.FilterSetExcitationFilterLink that a user has.
getExcitationFilterLinkCountPerOwner() - Method in class ome.model.acquisition.FilterSet
If fetched, returns the count(*) of ome.model.acquisition.FilterSetExcitationFilterLink that a user has.
getExcitationFilterLinkCountPerOwner() - Method in class ome.model.acquisition.LightPath
If fetched, returns the count(*) of ome.model.acquisition.LightPathExcitationFilterLink that a user has.
getExcitationWave() - Method in class ome.model.core.LogicalChannel
Enum-mapped unit-based field ome.model.core.LogicalChannel.excitationWave (ome.model.units.Length)
getExperiment() - Method in class ome.model.core.Image
Many-to-one field ome.model.core.Image.experiment (ome.model.experiment.Experiment)
getExperiment() - Method in class ome.model.experiment.MicrobeamManipulation
Many-to-one field ome.model.experiment.MicrobeamManipulation.experiment (ome.model.experiment.Experiment)
getExperimenter() - Method in class ome.model.meta.Event
Many-to-one field ome.model.meta.Event.experimenter (ome.model.meta.Experimenter)
getExperimenter() - Method in class ome.parameters.Parameters
Fulfills the old PojoOptions requirement for returning null if no owner set.
getExperimenterGroup() - Method in class ome.model.meta.Event
Many-to-one field ome.model.meta.Event.experimenterGroup (ome.model.meta.ExperimenterGroup)
getExposureTime() - Method in class ome.model.core.PlaneInfo
Enum-mapped unit-based field ome.model.core.PlaneInfo.exposureTime (ome.model.units.Time)
getExternalDescription() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.externalDescription (java.lang.String)
getExternalIdentifier() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.externalIdentifier (java.lang.String)
getExternalIdentifier() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.externalIdentifier (java.lang.String)
getExternalInfo() - Method in class ome.model.acquisition.Detector.Details
 
getExternalInfo() - Method in class ome.model.acquisition.DetectorSettings.Details
 
getExternalInfo() - Method in class ome.model.acquisition.Dichroic.Details
 
getExternalInfo() - Method in class ome.model.acquisition.Filter.Details
 
getExternalInfo() - Method in class ome.model.acquisition.FilterSet.Details
 
getExternalInfo() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
getExternalInfo() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
getExternalInfo() - Method in class ome.model.acquisition.ImagingEnvironment.Details
 
getExternalInfo() - Method in class ome.model.acquisition.Instrument.Details
 
getExternalInfo() - Method in class ome.model.acquisition.LightPath.Details
 
getExternalInfo() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
getExternalInfo() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
getExternalInfo() - Method in class ome.model.acquisition.LightSettings.Details
 
getExternalInfo() - Method in class ome.model.acquisition.LightSource.Details
 
getExternalInfo() - Method in class ome.model.acquisition.Microscope.Details
 
getExternalInfo() - Method in class ome.model.acquisition.Objective.Details
 
getExternalInfo() - Method in class ome.model.acquisition.ObjectiveSettings.Details
 
getExternalInfo() - Method in class ome.model.acquisition.OTF.Details
 
getExternalInfo() - Method in class ome.model.acquisition.StageLabel.Details
 
getExternalInfo() - Method in class ome.model.acquisition.TransmittanceRange.Details
 
getExternalInfo() - Method in class ome.model.annotations.Annotation.Details
 
getExternalInfo() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.FilterAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.FolderAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.ImageAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.NodeAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.PlateAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.RoiAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.SessionAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.annotations.WellAnnotationLink.Details
 
getExternalInfo() - Method in class ome.model.containers.Dataset.Details
 
getExternalInfo() - Method in class ome.model.containers.DatasetImageLink.Details
 
getExternalInfo() - Method in class ome.model.containers.Folder.Details
 
getExternalInfo() - Method in class ome.model.containers.FolderImageLink.Details
 
getExternalInfo() - Method in class ome.model.containers.FolderRoiLink.Details
 
getExternalInfo() - Method in class ome.model.containers.Project.Details
 
getExternalInfo() - Method in class ome.model.containers.ProjectDatasetLink.Details
 
getExternalInfo() - Method in class ome.model.core.Channel.Details
 
getExternalInfo() - Method in class ome.model.core.Image.Details
 
getExternalInfo() - Method in class ome.model.core.LogicalChannel.Details
 
getExternalInfo() - Method in class ome.model.core.OriginalFile.Details
 
getExternalInfo() - Method in class ome.model.core.Pixels.Details
 
getExternalInfo() - Method in class ome.model.core.PixelsOriginalFileMap.Details
 
getExternalInfo() - Method in class ome.model.core.PlaneInfo.Details
 
getExternalInfo() - Method in class ome.model.display.ChannelBinding.Details
 
getExternalInfo() - Method in class ome.model.display.CodomainMapContext.Details
 
getExternalInfo() - Method in class ome.model.display.ProjectionDef.Details
 
getExternalInfo() - Method in class ome.model.display.QuantumDef.Details
 
getExternalInfo() - Method in class ome.model.display.RenderingDef.Details
 
getExternalInfo() - Method in class ome.model.display.Thumbnail.Details
 
getExternalInfo() - Method in class ome.model.enums.AcquisitionMode.Details
 
getExternalInfo() - Method in class ome.model.enums.AdminPrivilege.Details
 
getExternalInfo() - Method in class ome.model.enums.ArcType.Details
 
getExternalInfo() - Method in class ome.model.enums.Binning.Details
 
getExternalInfo() - Method in class ome.model.enums.ChecksumAlgorithm.Details
 
getExternalInfo() - Method in class ome.model.enums.ContrastMethod.Details
 
getExternalInfo() - Method in class ome.model.enums.Correction.Details
 
getExternalInfo() - Method in class ome.model.enums.DetectorType.Details
 
getExternalInfo() - Method in class ome.model.enums.DimensionOrder.Details
 
getExternalInfo() - Method in class ome.model.enums.EventType.Details
 
getExternalInfo() - Method in class ome.model.enums.ExperimentType.Details
 
getExternalInfo() - Method in class ome.model.enums.Family.Details
 
getExternalInfo() - Method in class ome.model.enums.FilamentType.Details
 
getExternalInfo() - Method in class ome.model.enums.FilterType.Details
 
getExternalInfo() - Method in class ome.model.enums.Format.Details
 
getExternalInfo() - Method in class ome.model.enums.Illumination.Details
 
getExternalInfo() - Method in class ome.model.enums.Immersion.Details
 
getExternalInfo() - Method in class ome.model.enums.LaserMedium.Details
 
getExternalInfo() - Method in class ome.model.enums.LaserType.Details
 
getExternalInfo() - Method in class ome.model.enums.Medium.Details
 
getExternalInfo() - Method in class ome.model.enums.MicrobeamManipulationType.Details
 
getExternalInfo() - Method in class ome.model.enums.MicroscopeType.Details
 
getExternalInfo() - Method in class ome.model.enums.PhotometricInterpretation.Details
 
getExternalInfo() - Method in class ome.model.enums.PixelsType.Details
 
getExternalInfo() - Method in class ome.model.enums.ProjectionAxis.Details
 
getExternalInfo() - Method in class ome.model.enums.ProjectionType.Details
 
getExternalInfo() - Method in class ome.model.enums.Pulse.Details
 
getExternalInfo() - Method in class ome.model.enums.RenderingModel.Details
 
getExternalInfo() - Method in class ome.model.experiment.Experiment.Details
 
getExternalInfo() - Method in class ome.model.experiment.MicrobeamManipulation.Details
 
getExternalInfo() - Method in class ome.model.fs.Fileset.Details
 
getExternalInfo() - Method in class ome.model.fs.FilesetEntry.Details
 
getExternalInfo() - Method in class ome.model.fs.FilesetJobLink.Details
 
getExternalInfo() - Method in class ome.model.internal.Details
 
getExternalInfo() - Method in class ome.model.internal.Link.Details
 
getExternalInfo() - Method in class ome.model.jobs.Job.Details
 
getExternalInfo() - Method in class ome.model.jobs.JobOriginalFileLink.Details
 
getExternalInfo() - Method in class ome.model.jobs.JobStatus.Details
 
getExternalInfo() - Method in class ome.model.meta.DBPatch.Details
 
getExternalInfo() - Method in class ome.model.meta.Event.Details
 
getExternalInfo() - Method in class ome.model.meta.EventLog.Details
 
getExternalInfo() - Method in class ome.model.meta.Experimenter.Details
 
getExternalInfo() - Method in class ome.model.meta.ExperimenterGroup.Details
 
getExternalInfo() - Method in class ome.model.meta.ExternalInfo.Details
 
getExternalInfo() - Method in class ome.model.meta.GroupExperimenterMap.Details
 
getExternalInfo() - Method in class ome.model.meta.Namespace.Details
 
getExternalInfo() - Method in class ome.model.meta.Node.Details
 
getExternalInfo() - Method in class ome.model.meta.Session.Details
 
getExternalInfo() - Method in class ome.model.meta.ShareMember.Details
 
getExternalInfo() - Method in class ome.model.roi.AffineTransform.Details
 
getExternalInfo() - Method in class ome.model.roi.Roi.Details
 
getExternalInfo() - Method in class ome.model.roi.Shape.Details
 
getExternalInfo() - Method in class ome.model.screen.Plate.Details
 
getExternalInfo() - Method in class ome.model.screen.PlateAcquisition.Details
 
getExternalInfo() - Method in class ome.model.screen.Reagent.Details
 
getExternalInfo() - Method in class ome.model.screen.Screen.Details
 
getExternalInfo() - Method in class ome.model.screen.ScreenPlateLink.Details
 
getExternalInfo() - Method in class ome.model.screen.Well.Details
 
getExternalInfo() - Method in class ome.model.screen.WellReagentLink.Details
 
getExternalInfo() - Method in class ome.model.screen.WellSample.Details
 
getExternalInfo() - Method in class ome.model.stats.StatsInfo.Details
 
getFamily() - Method in class ome.model.display.ChannelBinding
Many-to-one field ome.model.display.ChannelBinding.family (ome.model.enums.Family)
getFile() - Method in class ome.model.annotations.FileAnnotation
Many-to-one field ome.model.annotations.FileAnnotation.file (ome.model.core.OriginalFile)
getFileset() - Method in class ome.model.core.Image
Many-to-one field ome.model.core.Image.fileset (ome.model.fs.Fileset)
getFileset() - Method in class ome.model.fs.FilesetEntry
Many-to-one field ome.model.fs.FilesetEntry.fileset (ome.model.fs.Fileset)
getFilesetEntries() - Method in class ome.model.core.OriginalFile
returns filesetEntries .
getFilesetEntry(int) - Method in class ome.model.fs.Fileset
Gets the ome.model.fs.FilesetEntry at the given index.
getFilesetJobLink(int) - Method in class ome.model.fs.Fileset
Gets the ome.model.fs.FilesetJobLink at the given index.
getFillColor() - Method in class ome.model.roi.Shape
Simple field ome.model.roi.Shape.fillColor (java.lang.Integer)
getFillRule() - Method in class ome.model.roi.Shape
Simple field ome.model.roi.Shape.fillRule (java.lang.String)
getFilter() - Method in class ome.model.acquisition.Instrument
returns filter .
getFilterSet() - Method in class ome.model.acquisition.Instrument
returns filterSet .
getFilterSet() - Method in class ome.model.acquisition.OTF
Many-to-one field ome.model.acquisition.OTF.filterSet (ome.model.acquisition.FilterSet)
getFilterSet() - Method in class ome.model.core.LogicalChannel
Many-to-one field ome.model.core.LogicalChannel.filterSet (ome.model.acquisition.FilterSet)
getFilterWheel() - Method in class ome.model.acquisition.Filter
Simple field ome.model.acquisition.Filter.filterWheel (java.lang.String)
getFinished() - Method in class ome.model.jobs.Job
Simple field ome.model.jobs.Job.finished (java.sql.Timestamp)
getFinished() - Method in class ome.model.meta.DBPatch
Simple field ome.model.meta.DBPatch.finished (java.sql.Timestamp)
getFirstName() - Method in class ome.model.meta.Experimenter
Simple field ome.model.meta.Experimenter.firstName (java.lang.String)
getFluor() - Method in class ome.model.core.LogicalChannel
Simple field ome.model.core.LogicalChannel.fluor (java.lang.String)
getFolderLinks() - Method in class ome.model.core.Image
returns folderLinks .
getFolderLinks() - Method in class ome.model.roi.Roi
returns folderLinks .
getFolderLinksCountPerOwner() - Method in class ome.model.core.Image
If fetched, returns the count(*) of ome.model.containers.FolderImageLink that a user has.
getFolderLinksCountPerOwner() - Method in class ome.model.roi.Roi
If fetched, returns the count(*) of ome.model.containers.FolderRoiLink that a user has.
getFontFamily() - Method in class ome.model.roi.Shape
Simple field ome.model.roi.Shape.fontFamily (java.lang.String)
getFontSize() - Method in class ome.model.roi.Shape
Enum-mapped unit-based field ome.model.roi.Shape.fontSize (ome.model.units.Length)
getFontStyle() - Method in class ome.model.roi.Shape
Simple field ome.model.roi.Shape.fontStyle (java.lang.String)
getFormat() - Method in class ome.model.core.Image
Many-to-one field ome.model.core.Image.format (ome.model.enums.Format)
getFrequencyMultiplication() - Method in class ome.model.acquisition.Laser
Simple field ome.model.acquisition.Laser.frequencyMultiplication (java.lang.Integer)
getGain() - Method in class ome.model.acquisition.Detector
Simple field ome.model.acquisition.Detector.gain (java.lang.Double)
getGain() - Method in class ome.model.acquisition.DetectorSettings
Simple field ome.model.acquisition.DetectorSettings.gain (java.lang.Double)
getGlobalMax() - Method in class ome.model.stats.StatsInfo
Simple field ome.model.stats.StatsInfo.globalMax (java.lang.Double)
getGlobalMin() - Method in class ome.model.stats.StatsInfo
Simple field ome.model.stats.StatsInfo.globalMin (java.lang.Double)
getGraphHolder() - Method in class ome.model.acquisition.Detector
 
getGraphHolder() - Method in class ome.model.acquisition.DetectorSettings
 
getGraphHolder() - Method in class ome.model.acquisition.Dichroic
 
getGraphHolder() - Method in class ome.model.acquisition.Filter
 
getGraphHolder() - Method in class ome.model.acquisition.FilterSet
 
getGraphHolder() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
getGraphHolder() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
getGraphHolder() - Method in class ome.model.acquisition.ImagingEnvironment
 
getGraphHolder() - Method in class ome.model.acquisition.Instrument
 
getGraphHolder() - Method in class ome.model.acquisition.LightPath
 
getGraphHolder() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
getGraphHolder() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
getGraphHolder() - Method in class ome.model.acquisition.LightSettings
 
getGraphHolder() - Method in class ome.model.acquisition.LightSource
 
getGraphHolder() - Method in class ome.model.acquisition.Microscope
 
getGraphHolder() - Method in class ome.model.acquisition.Objective
 
getGraphHolder() - Method in class ome.model.acquisition.ObjectiveSettings
 
getGraphHolder() - Method in class ome.model.acquisition.OTF
 
getGraphHolder() - Method in class ome.model.acquisition.StageLabel
 
getGraphHolder() - Method in class ome.model.acquisition.TransmittanceRange
 
getGraphHolder() - Method in class ome.model.annotations.Annotation
 
getGraphHolder() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.ChannelAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.DatasetAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.DetectorAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.DichroicAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.FilesetAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.FilterAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.FolderAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.ImageAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.LightPathAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.NodeAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.PlateAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.ProjectAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.ReagentAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.RoiAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.ScreenAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.SessionAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.ShapeAnnotationLink
 
getGraphHolder() - Method in class ome.model.annotations.WellAnnotationLink
 
getGraphHolder() - Method in class ome.model.containers.Dataset
 
getGraphHolder() - Method in class ome.model.containers.DatasetImageLink
 
getGraphHolder() - Method in class ome.model.containers.Folder
 
getGraphHolder() - Method in class ome.model.containers.FolderImageLink
 
getGraphHolder() - Method in class ome.model.containers.FolderRoiLink
 
getGraphHolder() - Method in class ome.model.containers.Project
 
getGraphHolder() - Method in class ome.model.containers.ProjectDatasetLink
 
getGraphHolder() - Method in class ome.model.core.Channel
 
getGraphHolder() - Method in class ome.model.core.Image
 
getGraphHolder() - Method in class ome.model.core.LogicalChannel
 
getGraphHolder() - Method in class ome.model.core.OriginalFile
 
getGraphHolder() - Method in class ome.model.core.Pixels
 
getGraphHolder() - Method in class ome.model.core.PixelsOriginalFileMap
 
getGraphHolder() - Method in class ome.model.core.PlaneInfo
 
getGraphHolder() - Method in class ome.model.display.ChannelBinding
 
getGraphHolder() - Method in class ome.model.display.CodomainMapContext
 
getGraphHolder() - Method in class ome.model.display.ProjectionDef
 
getGraphHolder() - Method in class ome.model.display.QuantumDef
 
getGraphHolder() - Method in class ome.model.display.RenderingDef
 
getGraphHolder() - Method in class ome.model.display.Thumbnail
 
getGraphHolder() - Method in class ome.model.enums.AcquisitionMode
 
getGraphHolder() - Method in class ome.model.enums.AdminPrivilege
 
getGraphHolder() - Method in class ome.model.enums.ArcType
 
getGraphHolder() - Method in class ome.model.enums.Binning
 
getGraphHolder() - Method in class ome.model.enums.ChecksumAlgorithm
 
getGraphHolder() - Method in class ome.model.enums.ContrastMethod
 
getGraphHolder() - Method in class ome.model.enums.Correction
 
getGraphHolder() - Method in class ome.model.enums.DetectorType
 
getGraphHolder() - Method in class ome.model.enums.DimensionOrder
 
getGraphHolder() - Method in class ome.model.enums.EventType
 
getGraphHolder() - Method in class ome.model.enums.ExperimentType
 
getGraphHolder() - Method in class ome.model.enums.Family
 
getGraphHolder() - Method in class ome.model.enums.FilamentType
 
getGraphHolder() - Method in class ome.model.enums.FilterType
 
getGraphHolder() - Method in class ome.model.enums.Format
 
getGraphHolder() - Method in class ome.model.enums.Illumination
 
getGraphHolder() - Method in class ome.model.enums.Immersion
 
getGraphHolder() - Method in class ome.model.enums.LaserMedium
 
getGraphHolder() - Method in class ome.model.enums.LaserType
 
getGraphHolder() - Method in class ome.model.enums.Medium
 
getGraphHolder() - Method in class ome.model.enums.MicrobeamManipulationType
 
getGraphHolder() - Method in class ome.model.enums.MicroscopeType
 
getGraphHolder() - Method in class ome.model.enums.PhotometricInterpretation
 
getGraphHolder() - Method in class ome.model.enums.PixelsType
 
getGraphHolder() - Method in class ome.model.enums.ProjectionAxis
 
getGraphHolder() - Method in class ome.model.enums.ProjectionType
 
getGraphHolder() - Method in class ome.model.enums.Pulse
 
getGraphHolder() - Method in class ome.model.enums.RenderingModel
 
getGraphHolder() - Method in class ome.model.experiment.Experiment
 
getGraphHolder() - Method in class ome.model.experiment.MicrobeamManipulation
 
getGraphHolder() - Method in class ome.model.fs.Fileset
 
getGraphHolder() - Method in class ome.model.fs.FilesetEntry
 
getGraphHolder() - Method in class ome.model.fs.FilesetJobLink
 
getGraphHolder() - Method in class ome.model.internal.Link
 
getGraphHolder() - Method in interface ome.model.IObject
retrieves the GraphHolder for this entity.
getGraphHolder() - Method in class ome.model.jobs.Job
 
getGraphHolder() - Method in class ome.model.jobs.JobOriginalFileLink
 
getGraphHolder() - Method in class ome.model.jobs.JobStatus
 
getGraphHolder() - Method in class ome.model.meta.DBPatch
 
getGraphHolder() - Method in class ome.model.meta.Event
 
getGraphHolder() - Method in class ome.model.meta.EventLog
 
getGraphHolder() - Method in class ome.model.meta.Experimenter
 
getGraphHolder() - Method in class ome.model.meta.ExperimenterGroup
 
getGraphHolder() - Method in class ome.model.meta.ExternalInfo
 
getGraphHolder() - Method in class ome.model.meta.GroupExperimenterMap
 
getGraphHolder() - Method in class ome.model.meta.Namespace
 
getGraphHolder() - Method in class ome.model.meta.Node
 
getGraphHolder() - Method in class ome.model.meta.Session
 
getGraphHolder() - Method in class ome.model.meta.ShareMember
 
getGraphHolder() - Method in class ome.model.roi.AffineTransform
 
getGraphHolder() - Method in class ome.model.roi.Roi
 
getGraphHolder() - Method in class ome.model.roi.Shape
 
getGraphHolder() - Method in class ome.model.screen.Plate
 
getGraphHolder() - Method in class ome.model.screen.PlateAcquisition
 
getGraphHolder() - Method in class ome.model.screen.Reagent
 
getGraphHolder() - Method in class ome.model.screen.Screen
 
getGraphHolder() - Method in class ome.model.screen.ScreenPlateLink
 
getGraphHolder() - Method in class ome.model.screen.Well
 
getGraphHolder() - Method in class ome.model.screen.WellReagentLink
 
getGraphHolder() - Method in class ome.model.screen.WellSample
 
getGraphHolder() - Method in class ome.model.stats.StatsInfo
 
getGraphHolder() - Method in class ome.util.PermDetails
 
getGreen() - Method in class ome.model.core.Channel
Simple field ome.model.core.Channel.green (java.lang.Integer)
getGreen() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.green (java.lang.Integer)
getGreen() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.green (java.lang.Integer)
getGroup() - Method in class ome.model.acquisition.Detector.Details
 
getGroup() - Method in class ome.model.acquisition.DetectorSettings.Details
 
getGroup() - Method in class ome.model.acquisition.Dichroic.Details
 
getGroup() - Method in class ome.model.acquisition.Filter.Details
 
getGroup() - Method in class ome.model.acquisition.FilterSet.Details
 
getGroup() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
getGroup() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
getGroup() - Method in class ome.model.acquisition.ImagingEnvironment.Details
 
getGroup() - Method in class ome.model.acquisition.Instrument.Details
 
getGroup() - Method in class ome.model.acquisition.LightPath.Details
 
getGroup() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
getGroup() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
getGroup() - Method in class ome.model.acquisition.LightSettings.Details
 
getGroup() - Method in class ome.model.acquisition.LightSource.Details
 
getGroup() - Method in class ome.model.acquisition.Microscope.Details
 
getGroup() - Method in class ome.model.acquisition.Objective.Details
 
getGroup() - Method in class ome.model.acquisition.ObjectiveSettings.Details
 
getGroup() - Method in class ome.model.acquisition.OTF.Details
 
getGroup() - Method in class ome.model.acquisition.StageLabel.Details
 
getGroup() - Method in class ome.model.acquisition.TransmittanceRange.Details
 
getGroup() - Method in class ome.model.annotations.Annotation.Details
 
getGroup() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.FilterAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.FolderAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.ImageAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.NodeAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.PlateAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.RoiAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.SessionAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
 
getGroup() - Method in class ome.model.annotations.WellAnnotationLink.Details
 
getGroup() - Method in class ome.model.containers.Dataset.Details
 
getGroup() - Method in class ome.model.containers.DatasetImageLink.Details
 
getGroup() - Method in class ome.model.containers.Folder.Details
 
getGroup() - Method in class ome.model.containers.FolderImageLink.Details
 
getGroup() - Method in class ome.model.containers.FolderRoiLink.Details
 
getGroup() - Method in class ome.model.containers.Project.Details
 
getGroup() - Method in class ome.model.containers.ProjectDatasetLink.Details
 
getGroup() - Method in class ome.model.core.Channel.Details
 
getGroup() - Method in class ome.model.core.Image.Details
 
getGroup() - Method in class ome.model.core.LogicalChannel.Details
 
getGroup() - Method in class ome.model.core.OriginalFile.Details
 
getGroup() - Method in class ome.model.core.Pixels.Details
 
getGroup() - Method in class ome.model.core.PixelsOriginalFileMap.Details
 
getGroup() - Method in class ome.model.core.PlaneInfo.Details
 
getGroup() - Method in class ome.model.display.ChannelBinding.Details
 
getGroup() - Method in class ome.model.display.CodomainMapContext.Details
 
getGroup() - Method in class ome.model.display.ProjectionDef.Details
 
getGroup() - Method in class ome.model.display.QuantumDef.Details
 
getGroup() - Method in class ome.model.display.RenderingDef.Details
 
getGroup() - Method in class ome.model.display.Thumbnail.Details
 
getGroup() - Method in class ome.model.experiment.Experiment.Details
 
getGroup() - Method in class ome.model.experiment.MicrobeamManipulation.Details
 
getGroup() - Method in class ome.model.fs.Fileset.Details
 
getGroup() - Method in class ome.model.fs.FilesetEntry.Details
 
getGroup() - Method in class ome.model.fs.FilesetJobLink.Details
 
getGroup() - Method in class ome.model.internal.Details
 
getGroup() - Method in class ome.model.internal.Link.Details
 
getGroup() - Method in class ome.model.jobs.Job.Details
 
getGroup() - Method in class ome.model.jobs.JobOriginalFileLink.Details
 
getGroup() - Method in class ome.model.meta.ExternalInfo.Details
 
getGroup() - Method in class ome.model.meta.Share
Many-to-one field ome.model.meta.Share.group (ome.model.meta.ExperimenterGroup)
getGroup() - Method in class ome.model.roi.AffineTransform.Details
 
getGroup() - Method in class ome.model.roi.Roi.Details
 
getGroup() - Method in class ome.model.roi.Shape.Details
 
getGroup() - Method in class ome.model.screen.Plate.Details
 
getGroup() - Method in class ome.model.screen.PlateAcquisition.Details
 
getGroup() - Method in class ome.model.screen.Reagent.Details
 
getGroup() - Method in class ome.model.screen.Screen.Details
 
getGroup() - Method in class ome.model.screen.ScreenPlateLink.Details
 
getGroup() - Method in class ome.model.screen.Well.Details
 
getGroup() - Method in class ome.model.screen.WellReagentLink.Details
 
getGroup() - Method in class ome.model.screen.WellSample.Details
 
getGroup() - Method in class ome.model.stats.StatsInfo.Details
 
getGroup() - Method in class ome.parameters.Parameters
Fulfills the old PojoOptions requirement for returning null if no owner set.
getGroupExperimenterMap() - Method in class ome.model.meta.Experimenter
returns groupExperimenterMap .
getGroupExperimenterMap(int) - Method in class ome.model.meta.Experimenter
Gets the ome.model.meta.GroupExperimenterMap at the given index.
getGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup
returns groupExperimenterMap .
getGroupIds(Collection<String>) - Method in interface ome.util.SqlAction
 
getGroupIds(Collection<String>) - Method in class ome.util.SqlAction.Impl
 
getGroupname() - Method in class ome.model.jobs.Job
Simple field ome.model.jobs.Job.groupname (java.lang.String)
getGroupPermissions(long) - Method in interface ome.util.SqlAction
Returns the permissions for the given group id.
getGroupPermissions(long) - Method in class ome.util.SqlAction.Impl
 
getHash() - Method in class ome.model.core.OriginalFile
Simple field ome.model.core.OriginalFile.hash (java.lang.String)
getHasher() - Method in class ome.model.core.OriginalFile
Many-to-one field ome.model.core.OriginalFile.hasher (ome.model.enums.ChecksumAlgorithm)
getHeight() - Method in class ome.model.roi.Mask
Simple field ome.model.roi.Mask.height (java.lang.Double)
getHeight() - Method in class ome.model.roi.Rectangle
Simple field ome.model.roi.Rectangle.height (java.lang.Double)
getHumidity() - Method in class ome.model.acquisition.ImagingEnvironment
Simple field ome.model.acquisition.ImagingEnvironment.humidity (java.lang.Double)
getId() - Method in class ome.model.acquisition.Detector
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.DetectorSettings
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.Dichroic
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.Filter
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.FilterSet
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.ImagingEnvironment
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.Instrument
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.LightPath
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.LightSettings
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.LightSource
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.Microscope
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.Objective
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.ObjectiveSettings
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.OTF
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.StageLabel
The DB unique identifier for this object.
getId() - Method in class ome.model.acquisition.TransmittanceRange
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.Annotation
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.AnnotationAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ChannelAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.DatasetAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.DetectorAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.DichroicAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ExperimenterAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.FilesetAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.FilterAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.FolderAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ImageAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.InstrumentAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.LightPathAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.LightSourceAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.NamespaceAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.NodeAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ObjectiveAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.OriginalFileAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.PlateAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ProjectAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ReagentAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.RoiAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ScreenAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.SessionAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.ShapeAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.annotations.WellAnnotationLink
The DB unique identifier for this object.
getId() - Method in class ome.model.containers.Dataset
The DB unique identifier for this object.
getId() - Method in class ome.model.containers.DatasetImageLink
The DB unique identifier for this object.
getId() - Method in class ome.model.containers.Folder
The DB unique identifier for this object.
getId() - Method in class ome.model.containers.FolderImageLink
The DB unique identifier for this object.
getId() - Method in class ome.model.containers.FolderRoiLink
The DB unique identifier for this object.
getId() - Method in class ome.model.containers.Project
The DB unique identifier for this object.
getId() - Method in class ome.model.containers.ProjectDatasetLink
The DB unique identifier for this object.
getId() - Method in class ome.model.core.Channel
The DB unique identifier for this object.
getId() - Method in class ome.model.core.Image
The DB unique identifier for this object.
getId() - Method in class ome.model.core.LogicalChannel
The DB unique identifier for this object.
getId() - Method in class ome.model.core.OriginalFile
The DB unique identifier for this object.
getId() - Method in class ome.model.core.Pixels
The DB unique identifier for this object.
getId() - Method in class ome.model.core.PixelsOriginalFileMap
The DB unique identifier for this object.
getId() - Method in class ome.model.core.PlaneInfo
The DB unique identifier for this object.
getId() - Method in class ome.model.display.ChannelBinding
The DB unique identifier for this object.
getId() - Method in class ome.model.display.CodomainMapContext
The DB unique identifier for this object.
getId() - Method in class ome.model.display.ProjectionDef
The DB unique identifier for this object.
getId() - Method in class ome.model.display.QuantumDef
The DB unique identifier for this object.
getId() - Method in class ome.model.display.RenderingDef
The DB unique identifier for this object.
getId() - Method in class ome.model.display.Thumbnail
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.AcquisitionMode
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.AdminPrivilege
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ArcType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Binning
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ChecksumAlgorithm
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ContrastMethod
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Correction
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.DetectorType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.DimensionOrder
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.EventType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ExperimentType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Family
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.FilamentType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.FilterType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Format
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Illumination
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Immersion
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.LaserMedium
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.LaserType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Medium
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.MicrobeamManipulationType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.MicroscopeType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.PhotometricInterpretation
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.PixelsType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ProjectionAxis
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.ProjectionType
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.Pulse
The DB unique identifier for this object.
getId() - Method in class ome.model.enums.RenderingModel
The DB unique identifier for this object.
getId() - Method in class ome.model.experiment.Experiment
The DB unique identifier for this object.
getId() - Method in class ome.model.experiment.MicrobeamManipulation
The DB unique identifier for this object.
getId() - Method in class ome.model.fs.Fileset
The DB unique identifier for this object.
getId() - Method in class ome.model.fs.FilesetEntry
The DB unique identifier for this object.
getId() - Method in class ome.model.fs.FilesetJobLink
The DB unique identifier for this object.
getId() - Method in class ome.model.internal.Link
The DB unique identifier for this object.
getId() - Method in interface ome.model.IObject
primary key of this object.
getId() - Method in class ome.model.jobs.Job
The DB unique identifier for this object.
getId() - Method in class ome.model.jobs.JobOriginalFileLink
The DB unique identifier for this object.
getId() - Method in class ome.model.jobs.JobStatus
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.DBPatch
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.Event
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.EventLog
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.Experimenter
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.ExperimenterGroup
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.ExternalInfo
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.GroupExperimenterMap
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.Namespace
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.Node
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.Session
The DB unique identifier for this object.
getId() - Method in class ome.model.meta.ShareMember
The DB unique identifier for this object.
getId() - Method in class ome.model.roi.AffineTransform
The DB unique identifier for this object.
getId() - Method in class ome.model.roi.Roi
The DB unique identifier for this object.
getId() - Method in class ome.model.roi.Shape
The DB unique identifier for this object.
getId() - Method in class ome.model.screen.Plate
The DB unique identifier for this object.
getId() - Method in class ome.model.screen.PlateAcquisition
The DB unique identifier for this object.
getId() - Method in class ome.model.screen.Reagent
The DB unique identifier for this object.
getId() - Method in class ome.model.screen.Screen
The DB unique identifier for this object.
getId() - Method in class ome.model.screen.ScreenPlateLink
The DB unique identifier for this object.
getId() - Method in class ome.model.screen.Well
The DB unique identifier for this object.
getId() - Method in class ome.model.screen.WellReagentLink
The DB unique identifier for this object.
getId() - Method in class ome.model.screen.WellSample
The DB unique identifier for this object.
getId() - Method in class ome.model.stats.StatsInfo
The DB unique identifier for this object.
getId() - Method in class ome.util.PermDetails
 
getIllumination() - Method in class ome.model.core.LogicalChannel
Many-to-one field ome.model.core.LogicalChannel.illumination (ome.model.enums.Illumination)
getImage() - Method in class ome.model.core.Pixels
Many-to-one field ome.model.core.Pixels.image (ome.model.core.Image)
getImage() - Method in class ome.model.roi.Roi
Many-to-one field ome.model.roi.Roi.image (ome.model.core.Image)
getImage() - Method in class ome.model.screen.WellSample
Many-to-one field ome.model.screen.WellSample.image (ome.model.core.Image)
getImageDescription() - Method in class ome.model.jobs.ImportJob
Deprecated.
Simple field ome.model.jobs.ImportJob.imageDescription (java.lang.String)
getImageLinks() - Method in class ome.model.containers.Dataset
returns imageLinks .
getImageLinks() - Method in class ome.model.containers.Folder
returns imageLinks .
getImageLinksCountPerOwner() - Method in class ome.model.containers.Dataset
If fetched, returns the count(*) of ome.model.containers.DatasetImageLink that a user has.
getImageLinksCountPerOwner() - Method in class ome.model.containers.Folder
If fetched, returns the count(*) of ome.model.containers.FolderImageLink that a user has.
getImageName() - Method in class ome.model.jobs.ImportJob
Deprecated.
Simple field ome.model.jobs.ImportJob.imageName (java.lang.String)
getImages() - Method in class ome.model.fs.Fileset
returns images .
getImagingEnvironment() - Method in class ome.model.core.Image
Many-to-one field ome.model.core.Image.imagingEnvironment (ome.model.acquisition.ImagingEnvironment)
getImmersion() - Method in class ome.model.acquisition.Objective
Many-to-one field ome.model.acquisition.Objective.immersion (ome.model.enums.Immersion)
getIndexes() - Method in class ome.util.LSID
Returns the indexes for this LSID within the OME-XML data model.
getInputEnd() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.inputEnd (java.lang.Double)
getInputStart() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.inputStart (java.lang.Double)
getInstitution() - Method in class ome.model.meta.Experimenter
Simple field ome.model.meta.Experimenter.institution (java.lang.String)
getInstrument() - Method in class ome.model.acquisition.Detector
Many-to-one field ome.model.acquisition.Detector.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.Dichroic
Many-to-one field ome.model.acquisition.Dichroic.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.Filter
Many-to-one field ome.model.acquisition.Filter.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.FilterSet
Many-to-one field ome.model.acquisition.FilterSet.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.LightSource
Many-to-one field ome.model.acquisition.LightSource.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.Objective
Many-to-one field ome.model.acquisition.Objective.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.acquisition.OTF
Many-to-one field ome.model.acquisition.OTF.instrument (ome.model.acquisition.Instrument)
getInstrument() - Method in class ome.model.core.Image
Many-to-one field ome.model.core.Image.instrument (ome.model.acquisition.Instrument)
getIntegration() - Method in class ome.model.acquisition.DetectorSettings
Simple field ome.model.acquisition.DetectorSettings.integration (java.lang.Integer)
getInternalContext() - Method in class ome.util.PermDetails
In order to properly test the permissions for this object, it must be possible to get the internal context.
getIris() - Method in class ome.model.acquisition.Objective
Simple field ome.model.acquisition.Objective.iris (java.lang.Boolean)
getItemCount() - Method in class ome.model.meta.Share
Simple field ome.model.meta.Share.itemCount (java.lang.Long)
getJavaClass() - Method in class ome.util.LSID
Returns the Java class which qualifies the type of object this LSID represents.
getJobLinks() - Method in class ome.model.fs.Fileset
returns jobLinks .
getJobLinksCountPerOwner() - Method in class ome.model.fs.Fileset
If fetched, returns the count(*) of ome.model.fs.FilesetJobLink that a user has.
getKeywords() - Method in class ome.model.meta.Namespace
Simple field ome.model.meta.Namespace.keywords (java.util.List)
getLaserMedium() - Method in class ome.model.acquisition.Laser
Many-to-one field ome.model.acquisition.Laser.laserMedium (ome.model.enums.LaserMedium)
getLastName() - Method in class ome.model.meta.Experimenter
Simple field ome.model.meta.Experimenter.lastName (java.lang.String)
getLdap() - Method in class ome.model.meta.Experimenter
Simple field ome.model.meta.Experimenter.ldap (java.lang.Boolean)
getLdap() - Method in class ome.model.meta.ExperimenterGroup
Simple field ome.model.meta.ExperimenterGroup.ldap (java.lang.Boolean)
getLdapExperimenters() - Method in interface ome.util.SqlAction
Gets the experimenters who have the ldap attribute enabled.
getLdapExperimenters() - Method in class ome.util.SqlAction.Impl
 
getLensNA() - Method in class ome.model.acquisition.Objective
Simple field ome.model.acquisition.Objective.lensNA (java.lang.Double)
getLightPath() - Method in class ome.model.core.LogicalChannel
Many-to-one field ome.model.core.LogicalChannel.lightPath (ome.model.acquisition.LightPath)
getLightPathExcitationFilterLink(int) - Method in class ome.model.acquisition.LightPath
Gets the ome.model.acquisition.LightPathExcitationFilterLink at the given index.
getLightSource() - Method in class ome.model.acquisition.Instrument
returns lightSource .
getLightSource() - Method in class ome.model.acquisition.LightSettings
Many-to-one field ome.model.acquisition.LightSettings.lightSource (ome.model.acquisition.LightSource)
getLightSourceSettings() - Method in class ome.model.core.LogicalChannel
Many-to-one field ome.model.core.LogicalChannel.lightSourceSettings (ome.model.acquisition.LightSettings)
getLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation
returns lightSourceSettings .
getLimit() - Method in class ome.parameters.Parameters
 
getLocked() - Method in class ome.model.roi.Shape
Simple field ome.model.roi.Shape.locked (java.lang.Boolean)
getLogicalChannel() - Method in class ome.model.core.Channel
Many-to-one field ome.model.core.Channel.logicalChannel (ome.model.core.LogicalChannel)
getLogs() - Method in class ome.model.meta.Event
returns logs .
getLongValue() - Method in class ome.model.annotations.LongAnnotation
Simple field ome.model.annotations.LongAnnotation.longValue (java.lang.Long)
getLookupTable() - Method in class ome.model.core.Channel
Simple field ome.model.core.Channel.lookupTable (java.lang.String)
getLookupTable() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.lookupTable (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.Detector
Simple field ome.model.acquisition.Detector.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.Dichroic
Simple field ome.model.acquisition.Dichroic.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.Filter
Simple field ome.model.acquisition.Filter.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.FilterSet
Simple field ome.model.acquisition.FilterSet.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.LightSource
Simple field ome.model.acquisition.LightSource.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.Microscope
Simple field ome.model.acquisition.Microscope.lotNumber (java.lang.String)
getLotNumber() - Method in class ome.model.acquisition.Objective
Simple field ome.model.acquisition.Objective.lotNumber (java.lang.String)
getLowerLimit() - Method in class ome.model.display.PlaneSlicingContext
Simple field ome.model.display.PlaneSlicingContext.lowerLimit (java.lang.Integer)
getLsid() - Method in class ome.model.meta.ExternalInfo
Simple field ome.model.meta.ExternalInfo.lsid (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.Detector
Simple field ome.model.acquisition.Detector.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.Dichroic
Simple field ome.model.acquisition.Dichroic.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.Filter
Simple field ome.model.acquisition.Filter.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.FilterSet
Simple field ome.model.acquisition.FilterSet.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.LightSource
Simple field ome.model.acquisition.LightSource.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.Microscope
Simple field ome.model.acquisition.Microscope.manufacturer (java.lang.String)
getManufacturer() - Method in class ome.model.acquisition.Objective
Simple field ome.model.acquisition.Objective.manufacturer (java.lang.String)
getMap() - Method in class ome.model.acquisition.GenericExcitationSource
 
getMap() - Method in class ome.model.acquisition.ImagingEnvironment
 
getMapValue() - Method in class ome.model.annotations.MapAnnotation
 
getMarkerEnd() - Method in class ome.model.roi.Line
Simple field ome.model.roi.Line.markerEnd (java.lang.String)
getMarkerEnd() - Method in class ome.model.roi.Polyline
Simple field ome.model.roi.Polyline.markerEnd (java.lang.String)
getMarkerStart() - Method in class ome.model.roi.Line
Simple field ome.model.roi.Line.markerStart (java.lang.String)
getMarkerStart() - Method in class ome.model.roi.Polyline
Simple field ome.model.roi.Polyline.markerStart (java.lang.String)
getMaximum() - Method in class ome.util.PixelData
Returns the minimum pixel value this pixel data supports.
getMaximumFieldCount() - Method in class ome.model.screen.PlateAcquisition
Simple field ome.model.screen.PlateAcquisition.maximumFieldCount (java.lang.Integer)
getMedium() - Method in class ome.model.acquisition.ObjectiveSettings
Many-to-one field ome.model.acquisition.ObjectiveSettings.medium (ome.model.enums.Medium)
getMessage() - Method in exception ome.conditions.acl.ACLViolation
 
getMessage() - Method in exception ome.conditions.acl.CollectedACLViolations
 
getMessage() - Method in class ome.model.jobs.Job
Simple field ome.model.jobs.Job.message (java.lang.String)
getMessage() - Method in class ome.model.meta.DBPatch
Simple field ome.model.meta.DBPatch.message (java.lang.String)
getMessage() - Method in class ome.model.meta.Session
Simple field ome.model.meta.Session.message (java.lang.String)
getMethodology() - Method in class ome.model.core.Pixels
Simple field ome.model.core.Pixels.methodology (java.lang.String)
getMicrobeamManipulation() - Method in class ome.model.acquisition.LightSettings
Many-to-one field ome.model.acquisition.LightSettings.microbeamManipulation (ome.model.experiment.MicrobeamManipulation)
getMicrobeamManipulation() - Method in class ome.model.experiment.Experiment
returns microbeamManipulation .
getMicroscope() - Method in class ome.model.acquisition.Instrument
Many-to-one field ome.model.acquisition.Instrument.microscope (ome.model.acquisition.Microscope)
getMiddleName() - Method in class ome.model.meta.Experimenter
Simple field ome.model.meta.Experimenter.middleName (java.lang.String)
getMimetype() - Method in class ome.model.core.OriginalFile
Simple field ome.model.core.OriginalFile.mimetype (java.lang.String)
getMimeType() - Method in class ome.model.display.Thumbnail
Simple field ome.model.display.Thumbnail.mimeType (java.lang.String)
getMinimum() - Method in class ome.util.PixelData
Returns the minimum pixel value this pixel data supports.
getMode() - Method in class ome.model.core.LogicalChannel
Many-to-one field ome.model.core.LogicalChannel.mode (ome.model.enums.AcquisitionMode)
getModel() - Method in class ome.model.acquisition.Detector
Simple field ome.model.acquisition.Detector.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.Dichroic
Simple field ome.model.acquisition.Dichroic.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.Filter
Simple field ome.model.acquisition.Filter.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.FilterSet
Simple field ome.model.acquisition.FilterSet.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.LightSource
Simple field ome.model.acquisition.LightSource.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.Microscope
Simple field ome.model.acquisition.Microscope.model (java.lang.String)
getModel() - Method in class ome.model.acquisition.Objective
Simple field ome.model.acquisition.Objective.model (java.lang.String)
getModel() - Method in class ome.model.display.RenderingDef
Many-to-one field ome.model.display.RenderingDef.model (ome.model.enums.RenderingModel)
getMtime() - Method in class ome.model.core.OriginalFile
Simple field ome.model.core.OriginalFile.mtime (java.sql.Timestamp)
getMultivalued() - Method in class ome.model.meta.Namespace
Simple field ome.model.meta.Namespace.multivalued (java.lang.Boolean)
getName() - Method in class ome.model.acquisition.StageLabel
Simple field ome.model.acquisition.StageLabel.name (java.lang.String)
getName() - Method in class ome.model.annotations.Annotation
Simple field ome.model.annotations.Annotation.name (java.lang.String)
getName() - Method in class ome.model.containers.Dataset
Simple field ome.model.containers.Dataset.name (java.lang.String)
getName() - Method in class ome.model.containers.Folder
Simple field ome.model.containers.Folder.name (java.lang.String)
getName() - Method in class ome.model.containers.Project
Simple field ome.model.containers.Project.name (java.lang.String)
getName() - Method in class ome.model.core.Image
Simple field ome.model.core.Image.name (java.lang.String)
getName() - Method in class ome.model.core.LogicalChannel
Simple field ome.model.core.LogicalChannel.name (java.lang.String)
getName() - Method in class ome.model.core.OriginalFile
Simple field ome.model.core.OriginalFile.name (java.lang.String)
getName() - Method in class ome.model.display.RenderingDef
Simple field ome.model.display.RenderingDef.name (java.lang.String)
getName() - Method in class ome.model.internal.NamedValue
 
getName() - Method in class ome.model.meta.ExperimenterGroup
Simple field ome.model.meta.ExperimenterGroup.name (java.lang.String)
getName() - Method in class ome.model.meta.Namespace
Simple field ome.model.meta.Namespace.name (java.lang.String)
getName() - Method in class ome.model.roi.Roi
Simple field ome.model.roi.Roi.name (java.lang.String)
getName() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.name (java.lang.String)
getName() - Method in class ome.model.screen.PlateAcquisition
Simple field ome.model.screen.PlateAcquisition.name (java.lang.String)
getName() - Method in class ome.model.screen.Reagent
Simple field ome.model.screen.Reagent.name (java.lang.String)
getName() - Method in class ome.model.screen.Screen
Simple field ome.model.screen.Screen.name (java.lang.String)
getNdFilter() - Method in class ome.model.core.LogicalChannel
Simple field ome.model.core.LogicalChannel.ndFilter (java.lang.Double)
getNode() - Method in class ome.model.meta.Session
Many-to-one field ome.model.meta.Session.node (ome.model.meta.Node)
getNoiseReduction() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.noiseReduction (java.lang.Boolean)
getNominalMagnification() - Method in class ome.model.acquisition.Objective
Simple field ome.model.acquisition.Objective.nominalMagnification (java.lang.Double)
getNs() - Method in class ome.model.annotations.Annotation
Simple field ome.model.annotations.Annotation.ns (java.lang.String)
getObjective() - Method in class ome.model.acquisition.Instrument
returns objective .
getObjective() - Method in class ome.model.acquisition.ObjectiveSettings
Many-to-one field ome.model.acquisition.ObjectiveSettings.objective (ome.model.acquisition.Objective)
getObjective() - Method in class ome.model.acquisition.OTF
Many-to-one field ome.model.acquisition.OTF.objective (ome.model.acquisition.Objective)
getObjectiveSettings() - Method in class ome.model.core.Image
Many-to-one field ome.model.core.Image.objectiveSettings (ome.model.acquisition.ObjectiveSettings)
getObjectVoidMethods(Class<T>) - Static method in class ome.util.Utils
primarily used in Grinder to discover what methods to call
getOffset() - Method in class ome.parameters.Parameters
 
getOffsetValue() - Method in class ome.model.acquisition.Detector
Simple field ome.model.acquisition.Detector.offsetValue (java.lang.Double)
getOffsetValue() - Method in class ome.model.acquisition.DetectorSettings
Simple field ome.model.acquisition.DetectorSettings.offsetValue (java.lang.Double)
getOmeName() - Method in class ome.model.meta.Experimenter
Simple field ome.model.meta.Experimenter.omeName (java.lang.String)
getOpticalAxisAveraged() - Method in class ome.model.acquisition.OTF
Simple field ome.model.acquisition.OTF.opticalAxisAveraged (java.lang.Boolean)
getOrder() - Method in class ome.util.PixelData
Returns the byte order of the backing buffer.
getOriginalFile() - Method in class ome.model.fs.FilesetEntry
Many-to-one field ome.model.fs.FilesetEntry.originalFile (ome.model.core.OriginalFile)
getOriginalFileLinks() - Method in class ome.model.jobs.Job
returns originalFileLinks .
getOriginalFileLinksCountPerOwner() - Method in class ome.model.jobs.Job
If fetched, returns the count(*) of ome.model.jobs.JobOriginalFileLink that a user has.
getOtf() - Method in class ome.model.acquisition.Instrument
returns otf .
getOtf() - Method in class ome.model.core.LogicalChannel
Many-to-one field ome.model.core.LogicalChannel.otf (ome.model.acquisition.OTF)
getOwner() - Method in class ome.model.acquisition.Detector.Details
 
getOwner() - Method in class ome.model.acquisition.DetectorSettings.Details
 
getOwner() - Method in class ome.model.acquisition.Dichroic.Details
 
getOwner() - Method in class ome.model.acquisition.Filter.Details
 
getOwner() - Method in class ome.model.acquisition.FilterSet.Details
 
getOwner() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
getOwner() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
getOwner() - Method in class ome.model.acquisition.ImagingEnvironment.Details
 
getOwner() - Method in class ome.model.acquisition.Instrument.Details
 
getOwner() - Method in class ome.model.acquisition.LightPath.Details
 
getOwner() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
getOwner() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
getOwner() - Method in class ome.model.acquisition.LightSettings.Details
 
getOwner() - Method in class ome.model.acquisition.LightSource.Details
 
getOwner() - Method in class ome.model.acquisition.Microscope.Details
 
getOwner() - Method in class ome.model.acquisition.Objective.Details
 
getOwner() - Method in class ome.model.acquisition.ObjectiveSettings.Details
 
getOwner() - Method in class ome.model.acquisition.OTF.Details
 
getOwner() - Method in class ome.model.acquisition.StageLabel.Details
 
getOwner() - Method in class ome.model.acquisition.TransmittanceRange.Details
 
getOwner() - Method in class ome.model.annotations.Annotation.Details
 
getOwner() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.FilterAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.FolderAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.ImageAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.NodeAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.PlateAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.RoiAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.SessionAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
 
getOwner() - Method in class ome.model.annotations.WellAnnotationLink.Details
 
getOwner() - Method in class ome.model.containers.Dataset.Details
 
getOwner() - Method in class ome.model.containers.DatasetImageLink.Details
 
getOwner() - Method in class ome.model.containers.Folder.Details
 
getOwner() - Method in class ome.model.containers.FolderImageLink.Details
 
getOwner() - Method in class ome.model.containers.FolderRoiLink.Details
 
getOwner() - Method in class ome.model.containers.Project.Details
 
getOwner() - Method in class ome.model.containers.ProjectDatasetLink.Details
 
getOwner() - Method in class ome.model.core.Channel.Details
 
getOwner() - Method in class ome.model.core.Image.Details
 
getOwner() - Method in class ome.model.core.LogicalChannel.Details
 
getOwner() - Method in class ome.model.core.OriginalFile.Details
 
getOwner() - Method in class ome.model.core.Pixels.Details
 
getOwner() - Method in class ome.model.core.PixelsOriginalFileMap.Details
 
getOwner() - Method in class ome.model.core.PlaneInfo.Details
 
getOwner() - Method in class ome.model.display.ChannelBinding.Details
 
getOwner() - Method in class ome.model.display.CodomainMapContext.Details
 
getOwner() - Method in class ome.model.display.ProjectionDef.Details
 
getOwner() - Method in class ome.model.display.QuantumDef.Details
 
getOwner() - Method in class ome.model.display.RenderingDef.Details
 
getOwner() - Method in class ome.model.display.Thumbnail.Details
 
getOwner() - Method in class ome.model.experiment.Experiment.Details
 
getOwner() - Method in class ome.model.experiment.MicrobeamManipulation.Details
 
getOwner() - Method in class ome.model.fs.Fileset.Details
 
getOwner() - Method in class ome.model.fs.FilesetEntry.Details
 
getOwner() - Method in class ome.model.fs.FilesetJobLink.Details
 
getOwner() - Method in interface ome.model.IDetails
 
getOwner() - Method in class ome.model.internal.Details
 
getOwner() - Method in class ome.model.internal.Link.Details
 
getOwner() - Method in class ome.model.jobs.Job.Details
 
getOwner() - Method in class ome.model.jobs.JobOriginalFileLink.Details
 
getOwner() - Method in class ome.model.meta.ExternalInfo.Details
 
getOwner() - Method in class ome.model.meta.GroupExperimenterMap
Simple field ome.model.meta.GroupExperimenterMap.owner (java.lang.Boolean)
getOwner() - Method in class ome.model.meta.Session
Many-to-one field ome.model.meta.Session.owner (ome.model.meta.Experimenter)
getOwner() - Method in class ome.model.roi.AffineTransform.Details
 
getOwner() - Method in class ome.model.roi.Roi.Details
 
getOwner() - Method in class ome.model.roi.Shape.Details
 
getOwner() - Method in class ome.model.screen.Plate.Details
 
getOwner() - Method in class ome.model.screen.PlateAcquisition.Details
 
getOwner() - Method in class ome.model.screen.Reagent.Details
 
getOwner() - Method in class ome.model.screen.Screen.Details
 
getOwner() - Method in class ome.model.screen.ScreenPlateLink.Details
 
getOwner() - Method in class ome.model.screen.Well.Details
 
getOwner() - Method in class ome.model.screen.WellReagentLink.Details
 
getOwner() - Method in class ome.model.screen.WellSample.Details
 
getOwner() - Method in class ome.model.stats.StatsInfo.Details
 
getParams() - Method in class ome.model.jobs.ParseJob
Simple field ome.model.jobs.ParseJob.params (byte[])
getParent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
Many-to-one field ome.model.acquisition.FilterSetEmissionFilterLink.parent (ome.model.acquisition.FilterSet)
getParent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
Many-to-one field ome.model.acquisition.FilterSetExcitationFilterLink.parent (ome.model.acquisition.FilterSet)
getParent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
Many-to-one field ome.model.acquisition.LightPathEmissionFilterLink.parent (ome.model.acquisition.LightPath)
getParent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
Many-to-one field ome.model.acquisition.LightPathExcitationFilterLink.parent (ome.model.acquisition.LightPath)
getParent() - Method in class ome.model.annotations.AnnotationAnnotationLink
Many-to-one field ome.model.annotations.AnnotationAnnotationLink.parent (ome.model.annotations.Annotation)
getParent() - Method in class ome.model.annotations.ChannelAnnotationLink
Many-to-one field ome.model.annotations.ChannelAnnotationLink.parent (ome.model.core.Channel)
getParent() - Method in class ome.model.annotations.DatasetAnnotationLink
Many-to-one field ome.model.annotations.DatasetAnnotationLink.parent (ome.model.containers.Dataset)
getParent() - Method in class ome.model.annotations.DetectorAnnotationLink
Many-to-one field ome.model.annotations.DetectorAnnotationLink.parent (ome.model.acquisition.Detector)
getParent() - Method in class ome.model.annotations.DichroicAnnotationLink
Many-to-one field ome.model.annotations.DichroicAnnotationLink.parent (ome.model.acquisition.Dichroic)
getParent() - Method in class ome.model.annotations.ExperimenterAnnotationLink
Many-to-one field ome.model.annotations.ExperimenterAnnotationLink.parent (ome.model.meta.Experimenter)
getParent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
Many-to-one field ome.model.annotations.ExperimenterGroupAnnotationLink.parent (ome.model.meta.ExperimenterGroup)
getParent() - Method in class ome.model.annotations.FilesetAnnotationLink
Many-to-one field ome.model.annotations.FilesetAnnotationLink.parent (ome.model.fs.Fileset)
getParent() - Method in class ome.model.annotations.FilterAnnotationLink
Many-to-one field ome.model.annotations.FilterAnnotationLink.parent (ome.model.acquisition.Filter)
getParent() - Method in class ome.model.annotations.FolderAnnotationLink
Many-to-one field ome.model.annotations.FolderAnnotationLink.parent (ome.model.containers.Folder)
getParent() - Method in class ome.model.annotations.ImageAnnotationLink
Many-to-one field ome.model.annotations.ImageAnnotationLink.parent (ome.model.core.Image)
getParent() - Method in class ome.model.annotations.InstrumentAnnotationLink
Many-to-one field ome.model.annotations.InstrumentAnnotationLink.parent (ome.model.acquisition.Instrument)
getParent() - Method in class ome.model.annotations.LightPathAnnotationLink
Many-to-one field ome.model.annotations.LightPathAnnotationLink.parent (ome.model.acquisition.LightPath)
getParent() - Method in class ome.model.annotations.LightSourceAnnotationLink
Many-to-one field ome.model.annotations.LightSourceAnnotationLink.parent (ome.model.acquisition.LightSource)
getParent() - Method in class ome.model.annotations.NamespaceAnnotationLink
Many-to-one field ome.model.annotations.NamespaceAnnotationLink.parent (ome.model.meta.Namespace)
getParent() - Method in class ome.model.annotations.NodeAnnotationLink
Many-to-one field ome.model.annotations.NodeAnnotationLink.parent (ome.model.meta.Node)
getParent() - Method in class ome.model.annotations.ObjectiveAnnotationLink
Many-to-one field ome.model.annotations.ObjectiveAnnotationLink.parent (ome.model.acquisition.Objective)
getParent() - Method in class ome.model.annotations.OriginalFileAnnotationLink
Many-to-one field ome.model.annotations.OriginalFileAnnotationLink.parent (ome.model.core.OriginalFile)
getParent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
Many-to-one field ome.model.annotations.PlaneInfoAnnotationLink.parent (ome.model.core.PlaneInfo)
getParent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
Many-to-one field ome.model.annotations.PlateAcquisitionAnnotationLink.parent (ome.model.screen.PlateAcquisition)
getParent() - Method in class ome.model.annotations.PlateAnnotationLink
Many-to-one field ome.model.annotations.PlateAnnotationLink.parent (ome.model.screen.Plate)
getParent() - Method in class ome.model.annotations.ProjectAnnotationLink
Many-to-one field ome.model.annotations.ProjectAnnotationLink.parent (ome.model.containers.Project)
getParent() - Method in class ome.model.annotations.ReagentAnnotationLink
Many-to-one field ome.model.annotations.ReagentAnnotationLink.parent (ome.model.screen.Reagent)
getParent() - Method in class ome.model.annotations.RoiAnnotationLink
Many-to-one field ome.model.annotations.RoiAnnotationLink.parent (ome.model.roi.Roi)
getParent() - Method in class ome.model.annotations.ScreenAnnotationLink
Many-to-one field ome.model.annotations.ScreenAnnotationLink.parent (ome.model.screen.Screen)
getParent() - Method in class ome.model.annotations.SessionAnnotationLink
Many-to-one field ome.model.annotations.SessionAnnotationLink.parent (ome.model.meta.Session)
getParent() - Method in class ome.model.annotations.ShapeAnnotationLink
Many-to-one field ome.model.annotations.ShapeAnnotationLink.parent (ome.model.roi.Shape)
getParent() - Method in class ome.model.annotations.WellAnnotationLink
Many-to-one field ome.model.annotations.WellAnnotationLink.parent (ome.model.screen.Well)
getParent() - Method in class ome.model.containers.DatasetImageLink
Many-to-one field ome.model.containers.DatasetImageLink.parent (ome.model.containers.Dataset)
getParent() - Method in class ome.model.containers.FolderImageLink
Many-to-one field ome.model.containers.FolderImageLink.parent (ome.model.containers.Folder)
getParent() - Method in class ome.model.containers.FolderRoiLink
Many-to-one field ome.model.containers.FolderRoiLink.parent (ome.model.containers.Folder)
getParent() - Method in class ome.model.containers.ProjectDatasetLink
Many-to-one field ome.model.containers.ProjectDatasetLink.parent (ome.model.containers.Project)
getParent() - Method in class ome.model.core.PixelsOriginalFileMap
Many-to-one field ome.model.core.PixelsOriginalFileMap.parent (ome.model.core.OriginalFile)
getParent() - Method in class ome.model.fs.FilesetJobLink
Many-to-one field ome.model.fs.FilesetJobLink.parent (ome.model.fs.Fileset)
getParent() - Method in interface ome.model.ILink
 
getParent() - Method in class ome.model.jobs.JobOriginalFileLink
Many-to-one field ome.model.jobs.JobOriginalFileLink.parent (ome.model.jobs.Job)
getParent() - Method in class ome.model.meta.GroupExperimenterMap
Many-to-one field ome.model.meta.GroupExperimenterMap.parent (ome.model.meta.ExperimenterGroup)
getParent() - Method in class ome.model.meta.ShareMember
Many-to-one field ome.model.meta.ShareMember.parent (ome.model.meta.Share)
getParent() - Method in class ome.model.screen.ScreenPlateLink
Many-to-one field ome.model.screen.ScreenPlateLink.parent (ome.model.screen.Screen)
getParent() - Method in class ome.model.screen.WellReagentLink
Many-to-one field ome.model.screen.WellReagentLink.parent (ome.model.screen.Well)
getParentFolder() - Method in class ome.model.containers.Folder
Many-to-one field ome.model.containers.Folder.parentFolder (ome.model.containers.Folder)
getPartial() - Method in class ome.model.core.Image
Simple field ome.model.core.Image.partial (java.lang.Boolean)
getPasswordHash(Long) - Method in interface ome.util.SqlAction
 
getPasswordHash(Long) - Method in class ome.util.SqlAction.Impl
 
getPath() - Method in class ome.model.acquisition.OTF
Simple field ome.model.acquisition.OTF.path (java.lang.String)
getPath() - Method in class ome.model.core.OriginalFile
Simple field ome.model.core.OriginalFile.path (java.lang.String)
getPerm1() - Method in class ome.model.internal.Permissions
 
getPermissions() - Method in class ome.model.acquisition.Detector.Details
 
getPermissions() - Method in class ome.model.acquisition.DetectorSettings.Details
 
getPermissions() - Method in class ome.model.acquisition.Dichroic.Details
 
getPermissions() - Method in class ome.model.acquisition.Filter.Details
 
getPermissions() - Method in class ome.model.acquisition.FilterSet.Details
 
getPermissions() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
getPermissions() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
getPermissions() - Method in class ome.model.acquisition.ImagingEnvironment.Details
 
getPermissions() - Method in class ome.model.acquisition.Instrument.Details
 
getPermissions() - Method in class ome.model.acquisition.LightPath.Details
 
getPermissions() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
getPermissions() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
getPermissions() - Method in class ome.model.acquisition.LightSettings.Details
 
getPermissions() - Method in class ome.model.acquisition.LightSource.Details
 
getPermissions() - Method in class ome.model.acquisition.Microscope.Details
 
getPermissions() - Method in class ome.model.acquisition.Objective.Details
 
getPermissions() - Method in class ome.model.acquisition.ObjectiveSettings.Details
 
getPermissions() - Method in class ome.model.acquisition.OTF.Details
 
getPermissions() - Method in class ome.model.acquisition.StageLabel.Details
 
getPermissions() - Method in class ome.model.acquisition.TransmittanceRange.Details
 
getPermissions() - Method in class ome.model.annotations.Annotation.Details
 
getPermissions() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.FilterAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.FolderAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.ImageAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.NodeAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.PlateAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.RoiAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.SessionAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
 
getPermissions() - Method in class ome.model.annotations.WellAnnotationLink.Details
 
getPermissions() - Method in class ome.model.containers.Dataset.Details
 
getPermissions() - Method in class ome.model.containers.DatasetImageLink.Details
 
getPermissions() - Method in class ome.model.containers.Folder.Details
 
getPermissions() - Method in class ome.model.containers.FolderImageLink.Details
 
getPermissions() - Method in class ome.model.containers.FolderRoiLink.Details
 
getPermissions() - Method in class ome.model.containers.Project.Details
 
getPermissions() - Method in class ome.model.containers.ProjectDatasetLink.Details
 
getPermissions() - Method in class ome.model.core.Channel.Details
 
getPermissions() - Method in class ome.model.core.Image.Details
 
getPermissions() - Method in class ome.model.core.LogicalChannel.Details
 
getPermissions() - Method in class ome.model.core.OriginalFile.Details
 
getPermissions() - Method in class ome.model.core.Pixels.Details
 
getPermissions() - Method in class ome.model.core.PixelsOriginalFileMap.Details
 
getPermissions() - Method in class ome.model.core.PlaneInfo.Details
 
getPermissions() - Method in class ome.model.display.ChannelBinding.Details
 
getPermissions() - Method in class ome.model.display.CodomainMapContext.Details
 
getPermissions() - Method in class ome.model.display.ProjectionDef.Details
 
getPermissions() - Method in class ome.model.display.QuantumDef.Details
 
getPermissions() - Method in class ome.model.display.RenderingDef.Details
 
getPermissions() - Method in class ome.model.display.Thumbnail.Details
 
getPermissions() - Method in class ome.model.enums.AcquisitionMode.Details
 
getPermissions() - Method in class ome.model.enums.AdminPrivilege.Details
 
getPermissions() - Method in class ome.model.enums.ArcType.Details
 
getPermissions() - Method in class ome.model.enums.Binning.Details
 
getPermissions() - Method in class ome.model.enums.ChecksumAlgorithm.Details
 
getPermissions() - Method in class ome.model.enums.ContrastMethod.Details
 
getPermissions() - Method in class ome.model.enums.Correction.Details
 
getPermissions() - Method in class ome.model.enums.DetectorType.Details
 
getPermissions() - Method in class ome.model.enums.DimensionOrder.Details
 
getPermissions() - Method in class ome.model.enums.EventType.Details
 
getPermissions() - Method in class ome.model.enums.ExperimentType.Details
 
getPermissions() - Method in class ome.model.enums.Family.Details
 
getPermissions() - Method in class ome.model.enums.FilamentType.Details
 
getPermissions() - Method in class ome.model.enums.FilterType.Details
 
getPermissions() - Method in class ome.model.enums.Format.Details
 
getPermissions() - Method in class ome.model.enums.Illumination.Details
 
getPermissions() - Method in class ome.model.enums.Immersion.Details
 
getPermissions() - Method in class ome.model.enums.LaserMedium.Details
 
getPermissions() - Method in class ome.model.enums.LaserType.Details
 
getPermissions() - Method in class ome.model.enums.Medium.Details
 
getPermissions() - Method in class ome.model.enums.MicrobeamManipulationType.Details
 
getPermissions() - Method in class ome.model.enums.MicroscopeType.Details
 
getPermissions() - Method in class ome.model.enums.PhotometricInterpretation.Details
 
getPermissions() - Method in class ome.model.enums.PixelsType.Details
 
getPermissions() - Method in class ome.model.enums.ProjectionAxis.Details
 
getPermissions() - Method in class ome.model.enums.ProjectionType.Details
 
getPermissions() - Method in class ome.model.enums.Pulse.Details
 
getPermissions() - Method in class ome.model.enums.RenderingModel.Details
 
getPermissions() - Method in class ome.model.experiment.Experiment.Details
 
getPermissions() - Method in class ome.model.experiment.MicrobeamManipulation.Details
 
getPermissions() - Method in class ome.model.fs.Fileset.Details
 
getPermissions() - Method in class ome.model.fs.FilesetEntry.Details
 
getPermissions() - Method in class ome.model.fs.FilesetJobLink.Details
 
getPermissions() - Method in interface ome.model.IDetails
 
getPermissions() - Method in class ome.model.internal.Details
Permissions is a component embedded into the Details component.
getPermissions() - Method in class ome.model.internal.Link.Details
 
getPermissions() - Method in class ome.model.jobs.Job.Details
 
getPermissions() - Method in class ome.model.jobs.JobOriginalFileLink.Details
 
getPermissions() - Method in class ome.model.jobs.JobStatus.Details
 
getPermissions() - Method in class ome.model.meta.DBPatch.Details
 
getPermissions() - Method in class ome.model.meta.Event.Details
 
getPermissions() - Method in class ome.model.meta.EventLog.Details
 
getPermissions() - Method in class ome.model.meta.Experimenter.Details
 
getPermissions() - Method in class ome.model.meta.ExperimenterGroup.Details
 
getPermissions() - Method in class ome.model.meta.ExternalInfo.Details
 
getPermissions() - Method in class ome.model.meta.GroupExperimenterMap.Details
 
getPermissions() - Method in class ome.model.meta.Namespace.Details
 
getPermissions() - Method in class ome.model.meta.Node.Details
 
getPermissions() - Method in class ome.model.meta.Session.Details
 
getPermissions() - Method in class ome.model.meta.ShareMember.Details
 
getPermissions() - Method in class ome.model.roi.AffineTransform.Details
 
getPermissions() - Method in class ome.model.roi.Roi.Details
 
getPermissions() - Method in class ome.model.roi.Shape.Details
 
getPermissions() - Method in class ome.model.screen.Plate.Details
 
getPermissions() - Method in class ome.model.screen.PlateAcquisition.Details
 
getPermissions() - Method in class ome.model.screen.Reagent.Details
 
getPermissions() - Method in class ome.model.screen.Screen.Details
 
getPermissions() - Method in class ome.model.screen.ScreenPlateLink.Details
 
getPermissions() - Method in class ome.model.screen.Well.Details
 
getPermissions() - Method in class ome.model.screen.WellReagentLink.Details
 
getPermissions() - Method in class ome.model.screen.WellSample.Details
 
getPermissions() - Method in class ome.model.stats.StatsInfo.Details
 
getPhotometricInterpretation() - Method in class ome.model.core.LogicalChannel
Many-to-one field ome.model.core.LogicalChannel.photometricInterpretation (ome.model.enums.PhotometricInterpretation)
getPhysicalSizeX() - Method in class ome.model.core.Pixels
Enum-mapped unit-based field ome.model.core.Pixels.physicalSizeX (ome.model.units.Length)
getPhysicalSizeY() - Method in class ome.model.core.Pixels
Enum-mapped unit-based field ome.model.core.Pixels.physicalSizeY (ome.model.units.Length)
getPhysicalSizeZ() - Method in class ome.model.core.Pixels
Enum-mapped unit-based field ome.model.core.Pixels.physicalSizeZ (ome.model.units.Length)
getPinHoleSize() - Method in class ome.model.core.LogicalChannel
Enum-mapped unit-based field ome.model.core.LogicalChannel.pinHoleSize (ome.model.units.Length)
getPixels() - Method in class ome.model.core.Channel
Many-to-one field ome.model.core.Channel.pixels (ome.model.core.Pixels)
getPixels() - Method in class ome.model.core.Image
returns pixels .
getPixels(int) - Method in class ome.model.core.Image
Gets the ome.model.core.Pixels at the given index.
getPixels() - Method in class ome.model.core.PlaneInfo
Many-to-one field ome.model.core.PlaneInfo.pixels (ome.model.core.Pixels)
getPixels() - Method in class ome.model.display.RenderingDef
Many-to-one field ome.model.display.RenderingDef.pixels (ome.model.core.Pixels)
getPixels() - Method in class ome.model.display.Thumbnail
Many-to-one field ome.model.display.Thumbnail.pixels (ome.model.core.Pixels)
getPixels() - Method in class ome.model.roi.Mask
Many-to-one field ome.model.roi.Mask.pixels (ome.model.core.Pixels)
getPixelsFileMaps() - Method in class ome.model.core.OriginalFile
returns pixelsFileMaps .
getPixelsFileMaps() - Method in class ome.model.core.Pixels
returns pixelsFileMaps .
getPixelsFileMapsCountPerOwner() - Method in class ome.model.core.OriginalFile
If fetched, returns the count(*) of ome.model.core.PixelsOriginalFileMap that a user has.
getPixelsFileMapsCountPerOwner() - Method in class ome.model.core.Pixels
If fetched, returns the count(*) of ome.model.core.PixelsOriginalFileMap that a user has.
getPixelsId() - Method in exception ome.conditions.MissingPyramidException
 
getPixelsNamePathRepo(long) - Method in class ome.util.actions.PostgresSqlAction
 
getPixelsNamePathRepo(long) - Method in interface ome.util.SqlAction
Retrieves the name, path and repo for the given pixels set.
getPixelsType() - Method in class ome.model.acquisition.OTF
Many-to-one field ome.model.acquisition.OTF.pixelsType (ome.model.enums.PixelsType)
getPixelsType() - Method in class ome.model.core.Pixels
Many-to-one field ome.model.core.Pixels.pixelsType (ome.model.enums.PixelsType)
getPixelValue(int) - Method in class ome.util.PixelData
Returns the pixel intensity value of the pixel at a given offset within the backing buffer.
getPixelValueDirect(int) - Method in class ome.util.PixelData
Returns the pixel intensity value of the pixel at a given offset within the backing buffer.
getPlaneInfo() - Method in class ome.model.core.Pixels
returns planeInfo .
getPlanePrevious() - Method in class ome.model.display.PlaneSlicingContext
Simple field ome.model.display.PlaneSlicingContext.planePrevious (java.lang.Integer)
getPlaneSelected() - Method in class ome.model.display.PlaneSlicingContext
Simple field ome.model.display.PlaneSlicingContext.planeSelected (java.lang.Integer)
getPlate() - Method in class ome.model.screen.PlateAcquisition
Many-to-one field ome.model.screen.PlateAcquisition.plate (ome.model.screen.Plate)
getPlate() - Method in class ome.model.screen.Well
Many-to-one field ome.model.screen.Well.plate (ome.model.screen.Plate)
getPlateAcquisition() - Method in class ome.model.screen.WellSample
Many-to-one field ome.model.screen.WellSample.plateAcquisition (ome.model.screen.PlateAcquisition)
getPlateAcquisitions() - Method in class ome.model.screen.Plate
returns plateAcquisitions .
getPlateLinks() - Method in class ome.model.screen.Screen
returns plateLinks .
getPlateLinksCountPerOwner() - Method in class ome.model.screen.Screen
If fetched, returns the count(*) of ome.model.screen.ScreenPlateLink that a user has.
getPockelCell() - Method in class ome.model.acquisition.Laser
Simple field ome.model.acquisition.Laser.pockelCell (java.lang.Boolean)
getPockelCellSetting() - Method in class ome.model.core.LogicalChannel
Simple field ome.model.core.LogicalChannel.pockelCellSetting (java.lang.Integer)
getPoints() - Method in class ome.model.roi.Polygon
Simple field ome.model.roi.Polygon.points (java.lang.String)
getPoints() - Method in class ome.model.roi.Polyline
Simple field ome.model.roi.Polyline.points (java.lang.String)
getPositionX() - Method in class ome.model.acquisition.StageLabel
Enum-mapped unit-based field ome.model.acquisition.StageLabel.positionX (ome.model.units.Length)
getPositionX() - Method in class ome.model.core.PlaneInfo
Enum-mapped unit-based field ome.model.core.PlaneInfo.positionX (ome.model.units.Length)
getPositionY() - Method in class ome.model.acquisition.StageLabel
Enum-mapped unit-based field ome.model.acquisition.StageLabel.positionY (ome.model.units.Length)
getPositionY() - Method in class ome.model.core.PlaneInfo
Enum-mapped unit-based field ome.model.core.PlaneInfo.positionY (ome.model.units.Length)
getPositionZ() - Method in class ome.model.acquisition.StageLabel
Enum-mapped unit-based field ome.model.acquisition.StageLabel.positionZ (ome.model.units.Length)
getPositionZ() - Method in class ome.model.core.PlaneInfo
Enum-mapped unit-based field ome.model.core.PlaneInfo.positionZ (ome.model.units.Length)
getPosX() - Method in class ome.model.screen.WellSample
Enum-mapped unit-based field ome.model.screen.WellSample.posX (ome.model.units.Length)
getPosY() - Method in class ome.model.screen.WellSample
Enum-mapped unit-based field ome.model.screen.WellSample.posY (ome.model.units.Length)
getPower() - Method in class ome.model.acquisition.LightSource
Enum-mapped unit-based field ome.model.acquisition.LightSource.power (ome.model.units.Power)
getPreviousPatch() - Method in class ome.model.meta.DBPatch
Simple field ome.model.meta.DBPatch.previousPatch (java.lang.Integer)
getPreviousVersion() - Method in class ome.model.meta.DBPatch
Simple field ome.model.meta.DBPatch.previousVersion (java.lang.String)
getPrimaryChannel() - Method in class ome.model.core.Pixels
Gets the first element of channels which can be interpreted as the primary or default element in some situations.
getPrimaryChannelBinding() - Method in class ome.model.display.RenderingDef
Gets the first element of waveRendering which can be interpreted as the primary or default element in some situations.
getPrimaryCodomainMapContext() - Method in class ome.model.display.ChannelBinding
Gets the first element of spatialDomainEnhancement which can be interpreted as the primary or default element in some situations.
getPrimaryFilesetEntry() - Method in class ome.model.fs.Fileset
Gets the first element of usedFiles which can be interpreted as the primary or default element in some situations.
getPrimaryFilesetJobLink() - Method in class ome.model.fs.Fileset
Gets the first element of jobLinks which can be interpreted as the primary or default element in some situations.
getPrimaryGroupExperimenterMap() - Method in class ome.model.meta.Experimenter
Gets the first element of groupExperimenterMap which can be interpreted as the primary or default element in some situations.
getPrimaryLightPathExcitationFilterLink() - Method in class ome.model.acquisition.LightPath
Gets the first element of excitationFilterLink which can be interpreted as the primary or default element in some situations.
getPrimaryPixels() - Method in class ome.model.core.Image
Gets the first element of pixels which can be interpreted as the primary or default element in some situations.
getPrimaryProjectionDef() - Method in class ome.model.display.RenderingDef
Gets the first element of projections which can be interpreted as the primary or default element in some situations.
getPrimaryShape() - Method in class ome.model.roi.Roi
Gets the first element of shapes which can be interpreted as the primary or default element in some situations.
getPrimaryWellSample() - Method in class ome.model.screen.Well
Gets the first element of wellSamples which can be interpreted as the primary or default element in some situations.
getProjectionDef(int) - Method in class ome.model.display.RenderingDef
Gets the ome.model.display.ProjectionDef at the given index.
getProjections() - Method in class ome.model.display.RenderingDef
returns projections .
getProjectLinks() - Method in class ome.model.containers.Dataset
returns projectLinks .
getProjectLinksCountPerOwner() - Method in class ome.model.containers.Dataset
If fetched, returns the count(*) of ome.model.containers.ProjectDatasetLink that a user has.
getProtocolDescription() - Method in class ome.model.screen.Screen
Simple field ome.model.screen.Screen.protocolDescription (java.lang.String)
getProtocolIdentifier() - Method in class ome.model.screen.Screen
Simple field ome.model.screen.Screen.protocolIdentifier (java.lang.String)
getPulse() - Method in class ome.model.acquisition.Laser
Many-to-one field ome.model.acquisition.Laser.pulse (ome.model.enums.Pulse)
getPump() - Method in class ome.model.acquisition.Laser
Many-to-one field ome.model.acquisition.Laser.pump (ome.model.acquisition.LightSource)
getQuantityClass() - Method in class ome.model.units.GenericEnumType
 
getQuantization() - Method in class ome.model.display.RenderingDef
Many-to-one field ome.model.display.RenderingDef.quantization (ome.model.display.QuantumDef)
getRadiusX() - Method in class ome.model.roi.Ellipse
Simple field ome.model.roi.Ellipse.radiusX (java.lang.Double)
getRadiusY() - Method in class ome.model.roi.Ellipse
Simple field ome.model.roi.Ellipse.radiusY (java.lang.Double)
getRdf() - Method in class ome.util.RdfPrinter
 
getReadOutRate() - Method in class ome.model.acquisition.DetectorSettings
Enum-mapped unit-based field ome.model.acquisition.DetectorSettings.readOutRate (ome.model.units.Frequency)
getReagentIdentifier() - Method in class ome.model.screen.Reagent
Simple field ome.model.screen.Reagent.reagentIdentifier (java.lang.String)
getReagentLinks() - Method in class ome.model.screen.Well
returns reagentLinks .
getReagentLinksCountPerOwner() - Method in class ome.model.screen.Well
If fetched, returns the count(*) of ome.model.screen.WellReagentLink that a user has.
getReagents() - Method in class ome.model.screen.Screen
returns reagents .
getReagentSetDescription() - Method in class ome.model.screen.Screen
Simple field ome.model.screen.Screen.reagentSetDescription (java.lang.String)
getReagentSetIdentifier() - Method in class ome.model.screen.Screen
Simple field ome.model.screen.Screen.reagentSetIdentifier (java.lang.String)
getRed() - Method in class ome.model.core.Channel
Simple field ome.model.core.Channel.red (java.lang.Integer)
getRed() - Method in class ome.model.display.ChannelBinding
Simple field ome.model.display.ChannelBinding.red (java.lang.Integer)
getRed() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.red (java.lang.Integer)
getRef() - Method in class ome.model.display.Thumbnail
Simple field ome.model.display.Thumbnail.ref (java.lang.String)
getRefractiveIndex() - Method in class ome.model.acquisition.ObjectiveSettings
Simple field ome.model.acquisition.ObjectiveSettings.refractiveIndex (java.lang.Double)
getRelatedTo() - Method in class ome.model.core.Pixels
Deprecated.
getRenderingDef() - Method in class ome.model.display.ChannelBinding
Many-to-one field ome.model.display.ChannelBinding.renderingDef (ome.model.display.RenderingDef)
getRenderingDef() - Method in class ome.model.display.ProjectionDef
Many-to-one field ome.model.display.ProjectionDef.renderingDef (ome.model.display.RenderingDef)
getRepetitionRate() - Method in class ome.model.acquisition.Laser
Enum-mapped unit-based field ome.model.acquisition.Laser.repetitionRate (ome.model.units.Frequency)
getReplacement() - Method in class ome.model.internal.GraphHolder
a replacement is a managed entity instance which has the same primary key as this instance.
getRepo() - Method in class ome.model.core.OriginalFile
Simple field ome.model.core.OriginalFile.repo (java.lang.String)
getRestrictions() - Method in class ome.model.internal.Permissions
 
getReverse() - Method in class ome.model.display.ReverseIntensityContext
Simple field ome.model.display.ReverseIntensityContext.reverse (java.lang.Boolean)
getRoi() - Method in class ome.model.roi.Shape
Many-to-one field ome.model.roi.Shape.roi (ome.model.roi.Roi)
getRoiLinks() - Method in class ome.model.containers.Folder
returns roiLinks .
getRoiLinksCountPerOwner() - Method in class ome.model.containers.Folder
If fetched, returns the count(*) of ome.model.containers.FolderRoiLink that a user has.
getRois() - Method in class ome.model.core.Image
returns rois .
getRow() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.row (java.lang.Integer)
getRowNamingConvention() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.rowNamingConvention (java.lang.String)
getRows() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.rows (java.lang.Integer)
getSamplesPerPixel() - Method in class ome.model.core.LogicalChannel
Simple field ome.model.core.LogicalChannel.samplesPerPixel (java.lang.Integer)
getScale() - Method in class ome.model.meta.Node
Simple field ome.model.meta.Node.scale (java.lang.Integer)
getScheduledFor() - Method in class ome.model.jobs.Job
Simple field ome.model.jobs.Job.scheduledFor (java.sql.Timestamp)
getScreen() - Method in class ome.model.screen.Reagent
Many-to-one field ome.model.screen.Reagent.screen (ome.model.screen.Screen)
getScreenLinks() - Method in class ome.model.screen.Plate
returns screenLinks .
getScreenLinksCountPerOwner() - Method in class ome.model.screen.Plate
If fetched, returns the count(*) of ome.model.screen.ScreenPlateLink that a user has.
getSerialNumber() - Method in class ome.model.acquisition.Detector
Simple field ome.model.acquisition.Detector.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.Dichroic
Simple field ome.model.acquisition.Dichroic.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.Filter
Simple field ome.model.acquisition.Filter.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.FilterSet
Simple field ome.model.acquisition.FilterSet.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.LightSource
Simple field ome.model.acquisition.LightSource.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.Microscope
Simple field ome.model.acquisition.Microscope.serialNumber (java.lang.String)
getSerialNumber() - Method in class ome.model.acquisition.Objective
Simple field ome.model.acquisition.Objective.serialNumber (java.lang.String)
getSeries() - Method in class ome.model.core.Image
Simple field ome.model.core.Image.series (java.lang.Integer)
getSession() - Method in class ome.model.meta.Event
Many-to-one field ome.model.meta.Event.session (ome.model.meta.Session)
getSessions() - Method in class ome.model.meta.Node
returns sessions .
getSettings() - Method in class ome.model.core.Pixels
returns settings .
getSha1() - Method in class ome.model.core.Pixels
Simple field ome.model.core.Pixels.sha1 (java.lang.String)
getShape(int) - Method in class ome.model.roi.Roi
Gets the ome.model.roi.Shape at the given index.
getShapeIds(long) - Method in class ome.util.actions.PostgresSqlAction
 
getShapeIds(long) - Method in interface ome.util.SqlAction
 
getShapes() - Method in class ome.model.roi.Roi
returns shapes .
getShareData(List<Long>) - Method in interface ome.util.SqlAction
Returns a map of Share ID to Share data blob.
getShareData(List<Long>) - Method in class ome.util.SqlAction.Impl
 
getSignificantBits() - Method in class ome.model.core.Pixels
Simple field ome.model.core.Pixels.significantBits (java.lang.Integer)
getSize() - Method in class ome.model.core.OriginalFile
Simple field ome.model.core.OriginalFile.size (java.lang.Long)
getSizeC() - Method in class ome.model.core.Pixels
Simple field ome.model.core.Pixels.sizeC (java.lang.Integer)
getSizeT() - Method in class ome.model.core.Pixels
Simple field ome.model.core.Pixels.sizeT (java.lang.Integer)
getSizeX() - Method in class ome.model.acquisition.OTF
Simple field ome.model.acquisition.OTF.sizeX (java.lang.Integer)
getSizeX() - Method in class ome.model.core.Pixels
Simple field ome.model.core.Pixels.sizeX (java.lang.Integer)
getSizeX() - Method in class ome.model.display.Thumbnail
Simple field ome.model.display.Thumbnail.sizeX (java.lang.Integer)
getSizeY() - Method in class ome.model.acquisition.OTF
Simple field ome.model.acquisition.OTF.sizeY (java.lang.Integer)
getSizeY() - Method in class ome.model.core.Pixels
Simple field ome.model.core.Pixels.sizeY (java.lang.Integer)
getSizeY() - Method in class ome.model.display.Thumbnail
Simple field ome.model.display.Thumbnail.sizeY (java.lang.Integer)
getSizeZ() - Method in class ome.model.core.Pixels
Simple field ome.model.core.Pixels.sizeZ (java.lang.Integer)
getSource() - Method in class ome.model.roi.Roi
Many-to-one field ome.model.roi.Roi.source (ome.model.core.OriginalFile)
getSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding
returns spatialDomainEnhancement .
getStageLabel() - Method in class ome.model.core.Image
Many-to-one field ome.model.core.Image.stageLabel (ome.model.acquisition.StageLabel)
getStarted() - Method in class ome.model.jobs.Job
Simple field ome.model.jobs.Job.started (java.sql.Timestamp)
getStarted() - Method in class ome.model.meta.Session
Simple field ome.model.meta.Session.started (java.sql.Timestamp)
getStartPlane() - Method in class ome.model.display.ProjectionDef
Simple field ome.model.display.ProjectionDef.startPlane (java.lang.Integer)
getStartTime() - Method in class ome.model.screen.PlateAcquisition
Simple field ome.model.screen.PlateAcquisition.startTime (java.sql.Timestamp)
getStartTime() - Method in class ome.parameters.Parameters
 
getStatsInfo() - Method in class ome.model.core.Channel
Many-to-one field ome.model.core.Channel.statsInfo (ome.model.stats.StatsInfo)
getStatus() - Method in class ome.model.jobs.Job
Many-to-one field ome.model.jobs.Job.status (ome.model.jobs.JobStatus)
getStatus() - Method in class ome.model.meta.Event
Simple field ome.model.meta.Event.status (java.lang.String)
getStatus() - Method in class ome.model.screen.Plate
Simple field ome.model.screen.Plate.status (java.lang.String)
getStatus() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.status (java.lang.String)
getStepping() - Method in class ome.model.display.ProjectionDef
Simple field ome.model.display.ProjectionDef.stepping (java.lang.Integer)
getString(String) - Static method in class ome.util.actions.PsqlStrings
 
getStrokeColor() - Method in class ome.model.roi.Shape
Simple field ome.model.roi.Shape.strokeColor (java.lang.Integer)
getStrokeDashArray() - Method in class ome.model.roi.Shape
Simple field ome.model.roi.Shape.strokeDashArray (java.lang.String)
getStrokeWidth() - Method in class ome.model.roi.Shape
Enum-mapped unit-based field ome.model.roi.Shape.strokeWidth (ome.model.units.Length)
getSubmitted() - Method in class ome.model.jobs.Job
Simple field ome.model.jobs.Job.submitted (java.sql.Timestamp)
getSudoer() - Method in class ome.model.meta.Session
Many-to-one field ome.model.meta.Session.sudoer (ome.model.meta.Experimenter)
getSymbol() - Method in enum ome.model.enums.UnitsElectricPotential
 
getSymbol() - Method in enum ome.model.enums.UnitsFrequency
 
getSymbol() - Method in enum ome.model.enums.UnitsLength
 
getSymbol() - Method in enum ome.model.enums.UnitsPower
 
getSymbol() - Method in enum ome.model.enums.UnitsPressure
 
getSymbol() - Method in enum ome.model.enums.UnitsTemperature
 
getSymbol() - Method in enum ome.model.enums.UnitsTime
 
getSymbol() - Method in interface ome.model.units.UnitEnum
 
getTemperature() - Method in class ome.model.acquisition.ImagingEnvironment
Enum-mapped unit-based field ome.model.acquisition.ImagingEnvironment.temperature (ome.model.units.Temperature)
getTemplatePrefix() - Method in class ome.model.fs.Fileset
Simple field ome.model.fs.Fileset.templatePrefix (java.lang.String)
getTermValue() - Method in class ome.model.annotations.TermAnnotation
Simple field ome.model.annotations.TermAnnotation.termValue (java.lang.String)
getTextValue() - Method in class ome.model.annotations.TextAnnotation
Simple field ome.model.annotations.TextAnnotation.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Ellipse
Simple field ome.model.roi.Ellipse.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Label
Simple field ome.model.roi.Label.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Line
Simple field ome.model.roi.Line.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Mask
Simple field ome.model.roi.Mask.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Path
Deprecated.
Simple field ome.model.roi.Path.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Point
Simple field ome.model.roi.Point.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Polygon
Simple field ome.model.roi.Polygon.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Polyline
Simple field ome.model.roi.Polyline.textValue (java.lang.String)
getTextValue() - Method in class ome.model.roi.Rectangle
Simple field ome.model.roi.Rectangle.textValue (java.lang.String)
getTheC() - Method in class ome.model.core.PlaneInfo
Simple field ome.model.core.PlaneInfo.theC (java.lang.Integer)
getTheC() - Method in class ome.model.roi.Shape
Simple field ome.model.roi.Shape.theC (java.lang.Integer)
getTheT() - Method in class ome.model.core.PlaneInfo
Simple field ome.model.core.PlaneInfo.theT (java.lang.Integer)
getTheT() - Method in class ome.model.roi.Shape
Simple field ome.model.roi.Shape.theT (java.lang.Integer)
getTheZ() - Method in class ome.model.core.PlaneInfo
Simple field ome.model.core.PlaneInfo.theZ (java.lang.Integer)
getTheZ() - Method in class ome.model.roi.Shape
Simple field ome.model.roi.Shape.theZ (java.lang.Integer)
getThreadIdentifier() - Static method in class ome.util.Utils
Returns a String which can be used to correlate log messages.
getThumbnails() - Method in class ome.model.core.Pixels
returns thumbnails .
getTime() - Method in class ome.model.meta.Event
Simple field ome.model.meta.Event.time (java.sql.Timestamp)
getTimeIncrement() - Method in class ome.model.core.Pixels
Enum-mapped unit-based field ome.model.core.Pixels.timeIncrement (ome.model.units.Time)
getTimepoint() - Method in class ome.model.screen.WellSample
Simple field ome.model.screen.WellSample.timepoint (java.sql.Timestamp)
getTimeToIdle() - Method in class ome.model.meta.Session
Simple field ome.model.meta.Session.timeToIdle (java.lang.Long)
getTimeToLive() - Method in class ome.model.meta.Session
Simple field ome.model.meta.Session.timeToLive (java.lang.Long)
getTimeValue() - Method in class ome.model.annotations.TimestampAnnotation
Simple field ome.model.annotations.TimestampAnnotation.timeValue (java.sql.Timestamp)
getTransform() - Method in class ome.model.roi.Shape
Many-to-one field ome.model.roi.Shape.transform (ome.model.roi.AffineTransform)
getTransmittance() - Method in class ome.model.acquisition.TransmittanceRange
Simple field ome.model.acquisition.TransmittanceRange.transmittance (java.lang.Double)
getTransmittanceRange() - Method in class ome.model.acquisition.Filter
Many-to-one field ome.model.acquisition.Filter.transmittanceRange (ome.model.acquisition.TransmittanceRange)
getTuneable() - Method in class ome.model.acquisition.Laser
Simple field ome.model.acquisition.Laser.tuneable (java.lang.Boolean)
getType() - Method in class ome.model.acquisition.Arc
Many-to-one field ome.model.acquisition.Arc.type (ome.model.enums.ArcType)
getType() - Method in class ome.model.acquisition.Detector
Many-to-one field ome.model.acquisition.Detector.type (ome.model.enums.DetectorType)
getType() - Method in class ome.model.acquisition.Filament
Many-to-one field ome.model.acquisition.Filament.type (ome.model.enums.FilamentType)
getType() - Method in class ome.model.acquisition.Filter
Many-to-one field ome.model.acquisition.Filter.type (ome.model.enums.FilterType)
getType() - Method in class ome.model.acquisition.Laser
Many-to-one field ome.model.acquisition.Laser.type (ome.model.enums.LaserType)
getType() - Method in class ome.model.acquisition.Microscope
Many-to-one field ome.model.acquisition.Microscope.type (ome.model.enums.MicroscopeType)
getType() - Method in class ome.model.display.ProjectionDef
Many-to-one field ome.model.display.ProjectionDef.type (ome.model.enums.ProjectionType)
getType() - Method in class ome.model.experiment.Experiment
Many-to-one field ome.model.experiment.Experiment.type (ome.model.enums.ExperimentType)
getType() - Method in class ome.model.experiment.MicrobeamManipulation
Many-to-one field ome.model.experiment.MicrobeamManipulation.type (ome.model.enums.MicrobeamManipulationType)
getType() - Method in class ome.model.jobs.Job
Simple field ome.model.jobs.Job.type (java.lang.String)
getType() - Method in class ome.model.meta.Event
Many-to-one field ome.model.meta.Event.type (ome.model.enums.EventType)
getType() - Method in class ome.model.screen.Screen
Simple field ome.model.screen.Screen.type (java.lang.String)
getType() - Method in class ome.model.screen.Well
Simple field ome.model.screen.Well.type (java.lang.String)
getUnit() - Method in class ome.model.units.ElectricPotential
Many-to-one field ome.model.units.ElectricPotential.unit (ome.model.enums.UnitsElectricPotential).
getUnit() - Method in class ome.model.units.Frequency
Many-to-one field ome.model.units.Frequency.unit (ome.model.enums.UnitsFrequency).
getUnit() - Method in class ome.model.units.Length
Many-to-one field ome.model.units.Length.unit (ome.model.enums.UnitsLength).
getUnit() - Method in class ome.model.units.Power
Many-to-one field ome.model.units.Power.unit (ome.model.enums.UnitsPower).
getUnit() - Method in class ome.model.units.Pressure
Many-to-one field ome.model.units.Pressure.unit (ome.model.enums.UnitsPressure).
getUnit() - Method in class ome.model.units.Temperature
Many-to-one field ome.model.units.Temperature.unit (ome.model.enums.UnitsTemperature).
getUnit() - Method in class ome.model.units.Time
Many-to-one field ome.model.units.Time.unit (ome.model.enums.UnitsTime).
getUnit() - Method in interface ome.model.units.Unit
 
getUp() - Method in class ome.model.meta.Node
Simple field ome.model.meta.Node.up (java.sql.Timestamp)
getUpdateEvent() - Method in class ome.model.acquisition.Detector.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.DetectorSettings.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.Dichroic.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.Filter.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.FilterSet.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.ImagingEnvironment.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.Instrument.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.LightPath.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.LightSettings.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.LightSource.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.Microscope.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.Objective.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.ObjectiveSettings.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.OTF.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.StageLabel.Details
 
getUpdateEvent() - Method in class ome.model.acquisition.TransmittanceRange.Details
 
getUpdateEvent() - Method in class ome.model.annotations.Annotation.Details
 
getUpdateEvent() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.FilterAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.FolderAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.ImageAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.NodeAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.PlateAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.RoiAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.SessionAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.annotations.WellAnnotationLink.Details
 
getUpdateEvent() - Method in class ome.model.containers.Dataset.Details
 
getUpdateEvent() - Method in class ome.model.containers.DatasetImageLink.Details
 
getUpdateEvent() - Method in class ome.model.containers.Folder.Details
 
getUpdateEvent() - Method in class ome.model.containers.FolderImageLink.Details
 
getUpdateEvent() - Method in class ome.model.containers.FolderRoiLink.Details
 
getUpdateEvent() - Method in class ome.model.containers.Project.Details
 
getUpdateEvent() - Method in class ome.model.containers.ProjectDatasetLink.Details
 
getUpdateEvent() - Method in class ome.model.core.Channel.Details
 
getUpdateEvent() - Method in class ome.model.core.Image.Details
 
getUpdateEvent() - Method in class ome.model.core.LogicalChannel.Details
 
getUpdateEvent() - Method in class ome.model.core.OriginalFile.Details
 
getUpdateEvent() - Method in class ome.model.core.Pixels.Details
 
getUpdateEvent() - Method in class ome.model.core.PixelsOriginalFileMap.Details
 
getUpdateEvent() - Method in class ome.model.core.PlaneInfo.Details
 
getUpdateEvent() - Method in class ome.model.display.ChannelBinding.Details
 
getUpdateEvent() - Method in class ome.model.display.CodomainMapContext.Details
 
getUpdateEvent() - Method in class ome.model.display.ProjectionDef.Details
 
getUpdateEvent() - Method in class ome.model.display.QuantumDef.Details
 
getUpdateEvent() - Method in class ome.model.display.RenderingDef.Details
 
getUpdateEvent() - Method in class ome.model.display.Thumbnail.Details
 
getUpdateEvent() - Method in class ome.model.experiment.Experiment.Details
 
getUpdateEvent() - Method in class ome.model.experiment.MicrobeamManipulation.Details
 
getUpdateEvent() - Method in class ome.model.fs.Fileset.Details
 
getUpdateEvent() - Method in class ome.model.fs.FilesetEntry.Details
 
getUpdateEvent() - Method in class ome.model.fs.FilesetJobLink.Details
 
getUpdateEvent() - Method in class ome.model.internal.Details
 
getUpdateEvent() - Method in class ome.model.internal.Link.Details
 
getUpdateEvent() - Method in class ome.model.jobs.Job.Details
 
getUpdateEvent() - Method in class ome.model.jobs.JobOriginalFileLink.Details
 
getUpdateEvent() - Method in class ome.model.meta.ExternalInfo.Details
Overrides Details.getUpdateEvent() to always return null.
getUpdateEvent() - Method in class ome.model.roi.AffineTransform.Details
 
getUpdateEvent() - Method in class ome.model.roi.Roi.Details
 
getUpdateEvent() - Method in class ome.model.roi.Shape.Details
 
getUpdateEvent() - Method in class ome.model.screen.Plate.Details
 
getUpdateEvent() - Method in class ome.model.screen.PlateAcquisition.Details
 
getUpdateEvent() - Method in class ome.model.screen.Reagent.Details
 
getUpdateEvent() - Method in class ome.model.screen.Screen.Details
 
getUpdateEvent() - Method in class ome.model.screen.ScreenPlateLink.Details
 
getUpdateEvent() - Method in class ome.model.screen.Well.Details
 
getUpdateEvent() - Method in class ome.model.screen.WellReagentLink.Details
 
getUpdateEvent() - Method in class ome.model.screen.WellSample.Details
 
getUpdateEvent() - Method in class ome.model.stats.StatsInfo.Details
 
getUpperLimit() - Method in class ome.model.display.PlaneSlicingContext
Simple field ome.model.display.PlaneSlicingContext.upperLimit (java.lang.Integer)
getUsedFiles() - Method in class ome.model.fs.Fileset
returns usedFiles .
getUserAgent() - Method in class ome.model.meta.Session
Simple field ome.model.meta.Session.userAgent (java.lang.String)
getUserEmailsByGroup(long) - Method in interface ome.util.SqlAction
Load all the non-empty email addresses for users in a given group.
getUserEmailsByGroup(long) - Method in class ome.util.SqlAction.Impl
 
getUserGroups(String) - Method in interface ome.util.SqlAction
 
getUserGroups(String) - Method in class ome.util.SqlAction.Impl
 
getUserId(String) - Method in interface ome.util.SqlAction
Get the user's ID
getUserId(String) - Method in class ome.util.SqlAction.Impl
 
getUserIP() - Method in class ome.model.meta.Session
Simple field ome.model.meta.Session.userIP (java.lang.String)
getUsername() - Method in class ome.model.jobs.Job
Simple field ome.model.jobs.Job.username (java.lang.String)
getUsername(long) - Method in interface ome.util.SqlAction
Get the user's name
getUsername(long) - Method in class ome.util.SqlAction.Impl
 
getUuid() - Method in class ome.model.meta.ExternalInfo
Simple field ome.model.meta.ExternalInfo.uuid (java.lang.String)
getUuid() - Method in class ome.model.meta.Node
Simple field ome.model.meta.Node.uuid (java.lang.String)
getUuid() - Method in class ome.model.meta.Session
Simple field ome.model.meta.Session.uuid (java.lang.String)
getValue() - Method in class ome.model.enums.AcquisitionMode
Simple field ome.model.enums.AcquisitionMode.value (java.lang.String)
getValue() - Method in class ome.model.enums.AdminPrivilege
Simple field ome.model.enums.AdminPrivilege.value (java.lang.String)
getValue() - Method in class ome.model.enums.ArcType
Simple field ome.model.enums.ArcType.value (java.lang.String)
getValue() - Method in class ome.model.enums.Binning
Simple field ome.model.enums.Binning.value (java.lang.String)
getValue() - Method in class ome.model.enums.ChecksumAlgorithm
Simple field ome.model.enums.ChecksumAlgorithm.value (java.lang.String)
getValue() - Method in class ome.model.enums.ContrastMethod
Simple field ome.model.enums.ContrastMethod.value (java.lang.String)
getValue() - Method in class ome.model.enums.Correction
Simple field ome.model.enums.Correction.value (java.lang.String)
getValue() - Method in class ome.model.enums.DetectorType
Simple field ome.model.enums.DetectorType.value (java.lang.String)
getValue() - Method in class ome.model.enums.DimensionOrder
Simple field ome.model.enums.DimensionOrder.value (java.lang.String)
getValue() - Method in class ome.model.enums.EventType
Simple field ome.model.enums.EventType.value (java.lang.String)
getValue() - Method in class ome.model.enums.ExperimentType
Simple field ome.model.enums.ExperimentType.value (java.lang.String)
getValue() - Method in class ome.model.enums.Family
Simple field ome.model.enums.Family.value (java.lang.String)
getValue() - Method in class ome.model.enums.FilamentType
Simple field ome.model.enums.FilamentType.value (java.lang.String)
getValue() - Method in class ome.model.enums.FilterType
Simple field ome.model.enums.FilterType.value (java.lang.String)
getValue() - Method in class ome.model.enums.Format
Simple field ome.model.enums.Format.value (java.lang.String)
getValue() - Method in class ome.model.enums.Illumination
Simple field ome.model.enums.Illumination.value (java.lang.String)
getValue() - Method in class ome.model.enums.Immersion
Simple field ome.model.enums.Immersion.value (java.lang.String)
getValue() - Method in class ome.model.enums.LaserMedium
Simple field ome.model.enums.LaserMedium.value (java.lang.String)
getValue() - Method in class ome.model.enums.LaserType
Simple field ome.model.enums.LaserType.value (java.lang.String)
getValue() - Method in class ome.model.enums.Medium
Simple field ome.model.enums.Medium.value (java.lang.String)
getValue() - Method in class ome.model.enums.MicrobeamManipulationType
Simple field ome.model.enums.MicrobeamManipulationType.value (java.lang.String)
getValue() - Method in class ome.model.enums.MicroscopeType
Simple field ome.model.enums.MicroscopeType.value (java.lang.String)
getValue() - Method in class ome.model.enums.PhotometricInterpretation
Simple field ome.model.enums.PhotometricInterpretation.value (java.lang.String)
getValue() - Method in class ome.model.enums.PixelsType
Simple field ome.model.enums.PixelsType.value (java.lang.String)
getValue() - Method in class ome.model.enums.ProjectionAxis
Simple field ome.model.enums.ProjectionAxis.value (java.lang.String)
getValue() - Method in class ome.model.enums.ProjectionType
Simple field ome.model.enums.ProjectionType.value (java.lang.String)
getValue() - Method in class ome.model.enums.Pulse
Simple field ome.model.enums.Pulse.value (java.lang.String)
getValue() - Method in class ome.model.enums.RenderingModel
Simple field ome.model.enums.RenderingModel.value (java.lang.String)
getValue() - Method in interface ome.model.IEnum
the single String value associated with this instance.
getValue() - Method in class ome.model.internal.NamedValue
 
getValue() - Method in class ome.model.jobs.JobStatus
Simple field ome.model.jobs.JobStatus.value (java.lang.String)
getValue() - Method in class ome.model.units.ElectricPotential
value of this unit-field.
getValue() - Method in class ome.model.units.Frequency
value of this unit-field.
getValue() - Method in class ome.model.units.Length
value of this unit-field.
getValue() - Method in class ome.model.units.Power
value of this unit-field.
getValue() - Method in class ome.model.units.Pressure
value of this unit-field.
getValue() - Method in class ome.model.units.Temperature
value of this unit-field.
getValue() - Method in class ome.model.units.Time
value of this unit-field.
getValue() - Method in interface ome.model.units.Unit
 
getVersion() - Method in class ome.model.acquisition.Detector
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.DetectorSettings
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.Dichroic
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.Filter
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.FilterSet
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.ImagingEnvironment
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.Instrument
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.LightPath
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.LightSettings
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.LightSource
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.Microscope
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.Objective
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.ObjectiveSettings
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.OTF
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.StageLabel
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.acquisition.TransmittanceRange
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.Annotation
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.AnnotationAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ChannelAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.DatasetAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.DetectorAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.DichroicAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ExperimenterAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.FilesetAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.FilterAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.FolderAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ImageAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.InstrumentAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.LightPathAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.LightSourceAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.NamespaceAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.NodeAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ObjectiveAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.OriginalFileAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.PlateAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ProjectAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ReagentAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.RoiAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ScreenAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.SessionAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.ShapeAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.annotations.WellAnnotationLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.Dataset
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.DatasetImageLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.Folder
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.FolderImageLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.FolderRoiLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.Project
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.containers.ProjectDatasetLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.Channel
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.Image
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.LogicalChannel
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.OriginalFile
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.Pixels
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.PixelsOriginalFileMap
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.core.PlaneInfo
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.ChannelBinding
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.CodomainMapContext
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.ProjectionDef
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.QuantumDef
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.RenderingDef
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.display.Thumbnail
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.experiment.Experiment
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.experiment.MicrobeamManipulation
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.fs.Fileset
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.fs.FilesetEntry
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.fs.FilesetJobLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in interface ome.model.IMutable
optimistic-lock version.
getVersion() - Method in class ome.model.internal.Link
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.jobs.Job
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.jobs.JobOriginalFileLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.Experimenter
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.ExperimenterGroup
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.GroupExperimenterMap
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.Namespace
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.Node
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.Session
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.meta.ShareMember
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.roi.AffineTransform
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.roi.Roi
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.roi.Shape
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.Plate
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.PlateAcquisition
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.Reagent
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.Screen
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.ScreenPlateLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.Well
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.WellReagentLink
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.screen.WellSample
This version number is controlled by the database for optimisitic locking.
getVersion() - Method in class ome.model.stats.StatsInfo
This version number is controlled by the database for optimisitic locking.
getVersionInfo() - Method in class ome.model.jobs.MetadataImportJob
 
getVersionInfo() - Method in class ome.model.jobs.UploadJob
 
getVoltage() - Method in class ome.model.acquisition.Detector
Enum-mapped unit-based field ome.model.acquisition.Detector.voltage (ome.model.units.ElectricPotential)
getVoltage() - Method in class ome.model.acquisition.DetectorSettings
Enum-mapped unit-based field ome.model.acquisition.DetectorSettings.voltage (ome.model.units.ElectricPotential)
getWaveIncrement() - Method in class ome.model.core.Pixels
Simple field ome.model.core.Pixels.waveIncrement (java.lang.Integer)
getWavelength() - Method in class ome.model.acquisition.Laser
Enum-mapped unit-based field ome.model.acquisition.Laser.wavelength (ome.model.units.Length)
getWavelength() - Method in class ome.model.acquisition.LightSettings
Enum-mapped unit-based field ome.model.acquisition.LightSettings.wavelength (ome.model.units.Length)
getWaveRendering() - Method in class ome.model.display.RenderingDef
returns waveRendering .
getWaveStart() - Method in class ome.model.core.Pixels
Simple field ome.model.core.Pixels.waveStart (java.lang.Integer)
getWell() - Method in class ome.model.screen.WellSample
Many-to-one field ome.model.screen.WellSample.well (ome.model.screen.Well)
getWellLinks() - Method in class ome.model.screen.Reagent
returns wellLinks .
getWellLinksCountPerOwner() - Method in class ome.model.screen.Reagent
If fetched, returns the count(*) of ome.model.screen.WellReagentLink that a user has.
getWellOriginX() - Method in class ome.model.screen.Plate
Enum-mapped unit-based field ome.model.screen.Plate.wellOriginX (ome.model.units.Length)
getWellOriginY() - Method in class ome.model.screen.Plate
Enum-mapped unit-based field ome.model.screen.Plate.wellOriginY (ome.model.units.Length)
getWells() - Method in class ome.model.screen.Plate
returns wells .
getWellSample() - Method in class ome.model.screen.PlateAcquisition
returns wellSample .
getWellSample(int) - Method in class ome.model.screen.Well
Gets the ome.model.screen.WellSample at the given index.
getWellSamples() - Method in class ome.model.core.Image
returns wellSamples .
getWellSamples() - Method in class ome.model.screen.Well
returns wellSamples .
getWidth() - Method in class ome.model.roi.Mask
Simple field ome.model.roi.Mask.width (java.lang.Double)
getWidth() - Method in class ome.model.roi.Rectangle
Simple field ome.model.roi.Rectangle.width (java.lang.Double)
getWorkingDistance() - Method in class ome.model.acquisition.Objective
Enum-mapped unit-based field ome.model.acquisition.Objective.workingDistance (ome.model.units.Length)
getX() - Method in class ome.model.roi.Ellipse
Simple field ome.model.roi.Ellipse.x (java.lang.Double)
getX() - Method in class ome.model.roi.Label
Simple field ome.model.roi.Label.x (java.lang.Double)
getX() - Method in class ome.model.roi.Mask
Simple field ome.model.roi.Mask.x (java.lang.Double)
getX() - Method in class ome.model.roi.Point
Simple field ome.model.roi.Point.x (java.lang.Double)
getX() - Method in class ome.model.roi.Rectangle
Simple field ome.model.roi.Rectangle.x (java.lang.Double)
getX1() - Method in class ome.model.roi.Line
Simple field ome.model.roi.Line.x1 (java.lang.Double)
getX2() - Method in class ome.model.roi.Line
Simple field ome.model.roi.Line.x2 (java.lang.Double)
getXend() - Method in class ome.model.display.ContrastStretchingContext
Simple field ome.model.display.ContrastStretchingContext.xend (java.lang.Integer)
getXstart() - Method in class ome.model.display.ContrastStretchingContext
Simple field ome.model.display.ContrastStretchingContext.xstart (java.lang.Integer)
getY() - Method in class ome.model.roi.Ellipse
Simple field ome.model.roi.Ellipse.y (java.lang.Double)
getY() - Method in class ome.model.roi.Label
Simple field ome.model.roi.Label.y (java.lang.Double)
getY() - Method in class ome.model.roi.Mask
Simple field ome.model.roi.Mask.y (java.lang.Double)
getY() - Method in class ome.model.roi.Point
Simple field ome.model.roi.Point.y (java.lang.Double)
getY() - Method in class ome.model.roi.Rectangle
Simple field ome.model.roi.Rectangle.y (java.lang.Double)
getY1() - Method in class ome.model.roi.Line
Simple field ome.model.roi.Line.y1 (java.lang.Double)
getY2() - Method in class ome.model.roi.Line
Simple field ome.model.roi.Line.y2 (java.lang.Double)
getYend() - Method in class ome.model.display.ContrastStretchingContext
Simple field ome.model.display.ContrastStretchingContext.yend (java.lang.Integer)
getYstart() - Method in class ome.model.display.ContrastStretchingContext
Simple field ome.model.display.ContrastStretchingContext.ystart (java.lang.Integer)
getZoom() - Method in class ome.model.acquisition.Detector
Simple field ome.model.acquisition.Detector.zoom (java.lang.Double)
getZoom() - Method in class ome.model.acquisition.DetectorSettings
Simple field ome.model.acquisition.DetectorSettings.zoom (java.lang.Double)
globalMax - Variable in class ome.model.stats.StatsInfo
 
GLOBALMAX - Static variable in class ome.model.stats.StatsInfo
 
globalMin - Variable in class ome.model.stats.StatsInfo
 
GLOBALMIN - Static variable in class ome.model.stats.StatsInfo
 
grant(Permissions.Role, Permissions.Right...) - Method in class ome.model.internal.Permissions
turns on the rights for the given role.
grantAll(Permissions) - Method in class ome.model.internal.Permissions
takes a permissions instance and ORs it with the current instance.
GraphHolder - Class in ome.model.internal
holds information regarding the graph to which an IObject belongs.
GraphHolder() - Constructor for class ome.model.internal.GraphHolder
 
green - Variable in class ome.model.core.Channel
 
GREEN - Static variable in class ome.model.core.Channel
 
green - Variable in class ome.model.display.ChannelBinding
 
GREEN - Static variable in class ome.model.display.ChannelBinding
 
green - Variable in class ome.model.screen.Well
 
GREEN - Static variable in class ome.model.screen.Well
 
GROUP - Static variable in class ome.model.internal.Details
 
group - Variable in class ome.model.meta.Share
 
GROUP - Static variable in class ome.model.meta.Share
 
group(long) - Method in class ome.parameters.Filter
 
group() - Method in class ome.parameters.Filter
 
group() - Method in class ome.parameters.Parameters
 
GROUP_FILTER - Static variable in class ome.model.acquisition.Arc
 
GROUP_FILTER - Static variable in class ome.model.acquisition.Detector
 
GROUP_FILTER - Static variable in class ome.model.acquisition.DetectorSettings
 
GROUP_FILTER - Static variable in class ome.model.acquisition.Dichroic
 
GROUP_FILTER - Static variable in class ome.model.acquisition.Filament
 
GROUP_FILTER - Static variable in class ome.model.acquisition.Filter
 
GROUP_FILTER - Static variable in class ome.model.acquisition.FilterSet
 
GROUP_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
GROUP_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
GROUP_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource
 
GROUP_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment
 
GROUP_FILTER - Static variable in class ome.model.acquisition.Instrument
 
GROUP_FILTER - Static variable in class ome.model.acquisition.Laser
 
GROUP_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode
 
GROUP_FILTER - Static variable in class ome.model.acquisition.LightPath
 
GROUP_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
GROUP_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
GROUP_FILTER - Static variable in class ome.model.acquisition.LightSettings
 
GROUP_FILTER - Static variable in class ome.model.acquisition.LightSource
 
GROUP_FILTER - Static variable in class ome.model.acquisition.Microscope
 
GROUP_FILTER - Static variable in class ome.model.acquisition.Objective
 
GROUP_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings
 
GROUP_FILTER - Static variable in class ome.model.acquisition.OTF
 
GROUP_FILTER - Static variable in class ome.model.acquisition.StageLabel
 
GROUP_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange
 
GROUP_FILTER - Static variable in class ome.model.annotations.Annotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.BasicAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.CommentAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.FileAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.ListAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.LongAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.MapAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.NumericAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.TagAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.TermAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.TextAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.TypeAnnotation
 
GROUP_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink
 
GROUP_FILTER - Static variable in class ome.model.annotations.XmlAnnotation
 
GROUP_FILTER - Static variable in class ome.model.containers.Dataset
 
GROUP_FILTER - Static variable in class ome.model.containers.DatasetImageLink
 
GROUP_FILTER - Static variable in class ome.model.containers.Folder
 
GROUP_FILTER - Static variable in class ome.model.containers.FolderImageLink
 
GROUP_FILTER - Static variable in class ome.model.containers.FolderRoiLink
 
GROUP_FILTER - Static variable in class ome.model.containers.Project
 
GROUP_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink
 
GROUP_FILTER - Static variable in class ome.model.core.Channel
 
GROUP_FILTER - Static variable in class ome.model.core.Image
 
GROUP_FILTER - Static variable in class ome.model.core.LogicalChannel
 
GROUP_FILTER - Static variable in class ome.model.core.OriginalFile
 
GROUP_FILTER - Static variable in class ome.model.core.Pixels
 
GROUP_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap
 
GROUP_FILTER - Static variable in class ome.model.core.PlaneInfo
 
GROUP_FILTER - Static variable in class ome.model.display.ChannelBinding
 
GROUP_FILTER - Static variable in class ome.model.display.CodomainMapContext
 
GROUP_FILTER - Static variable in class ome.model.display.ContrastStretchingContext
 
GROUP_FILTER - Static variable in class ome.model.display.PlaneSlicingContext
 
GROUP_FILTER - Static variable in class ome.model.display.ProjectionDef
 
GROUP_FILTER - Static variable in class ome.model.display.QuantumDef
 
GROUP_FILTER - Static variable in class ome.model.display.RenderingDef
 
GROUP_FILTER - Static variable in class ome.model.display.ReverseIntensityContext
 
GROUP_FILTER - Static variable in class ome.model.display.Thumbnail
 
GROUP_FILTER - Static variable in class ome.model.experiment.Experiment
 
GROUP_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation
 
GROUP_FILTER - Static variable in class ome.model.fs.Fileset
 
GROUP_FILTER - Static variable in class ome.model.fs.FilesetEntry
 
GROUP_FILTER - Static variable in class ome.model.fs.FilesetJobLink
 
GROUP_FILTER - Static variable in class ome.model.internal.Link
 
GROUP_FILTER - Static variable in class ome.model.jobs.ImportJob
Deprecated.
 
GROUP_FILTER - Static variable in class ome.model.jobs.IndexingJob
 
GROUP_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob
 
GROUP_FILTER - Static variable in class ome.model.jobs.Job
 
GROUP_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink
 
GROUP_FILTER - Static variable in class ome.model.jobs.MetadataImportJob
 
GROUP_FILTER - Static variable in class ome.model.jobs.ParseJob
 
GROUP_FILTER - Static variable in class ome.model.jobs.PixelDataJob
 
GROUP_FILTER - Static variable in class ome.model.jobs.ScriptJob
 
GROUP_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob
 
GROUP_FILTER - Static variable in class ome.model.jobs.UploadJob
 
GROUP_FILTER - Static variable in class ome.model.meta.ExternalInfo
 
GROUP_FILTER - Static variable in class ome.model.roi.AffineTransform
 
GROUP_FILTER - Static variable in class ome.model.roi.Ellipse
 
GROUP_FILTER - Static variable in class ome.model.roi.Label
 
GROUP_FILTER - Static variable in class ome.model.roi.Line
 
GROUP_FILTER - Static variable in class ome.model.roi.Mask
 
GROUP_FILTER - Static variable in class ome.model.roi.Path
Deprecated.
 
GROUP_FILTER - Static variable in class ome.model.roi.Point
 
GROUP_FILTER - Static variable in class ome.model.roi.Polygon
 
GROUP_FILTER - Static variable in class ome.model.roi.Polyline
 
GROUP_FILTER - Static variable in class ome.model.roi.Rectangle
 
GROUP_FILTER - Static variable in class ome.model.roi.Roi
 
GROUP_FILTER - Static variable in class ome.model.roi.Shape
 
GROUP_FILTER - Static variable in class ome.model.screen.Plate
 
GROUP_FILTER - Static variable in class ome.model.screen.PlateAcquisition
 
GROUP_FILTER - Static variable in class ome.model.screen.Reagent
 
GROUP_FILTER - Static variable in class ome.model.screen.Screen
 
GROUP_FILTER - Static variable in class ome.model.screen.ScreenPlateLink
 
GROUP_FILTER - Static variable in class ome.model.screen.Well
 
GROUP_FILTER - Static variable in class ome.model.screen.WellReagentLink
 
GROUP_FILTER - Static variable in class ome.model.screen.WellSample
 
GROUP_FILTER - Static variable in class ome.model.stats.StatsInfo
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
 
GROUP_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
 
GROUP_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel
 
GROUP_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels
 
GROUP_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder
 
GROUP_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project
 
GROUP_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image
 
GROUP_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument
 
GROUP_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument
 
GROUP_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
GROUP_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
GROUP_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
GROUP_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
GROUP_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
GROUP_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
GROUP_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
 
GROUP_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument
 
GROUP_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument
 
GROUP_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image
 
GROUP_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi
 
GROUP_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset
 
GROUP_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder
 
GROUP_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset
 
GROUP_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset
 
GROUP_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
 
GROUP_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
 
GROUP_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
 
GROUP_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
 
GROUP_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
 
GROUP_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument
 
GROUP_FILTER_PIXELS - Static variable in class ome.model.core.Image
 
GROUP_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
 
GROUP_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
 
GROUP_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels
 
GROUP_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
 
GROUP_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen
 
GROUP_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef
 
GROUP_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset
 
GROUP_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well
 
GROUP_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen
 
GROUP_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder
 
GROUP_FILTER_ROIS - Static variable in class ome.model.core.Image
 
GROUP_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate
 
GROUP_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels
 
GROUP_FILTER_SHAPES - Static variable in class ome.model.roi.Roi
 
GROUP_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
 
GROUP_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels
 
GROUP_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset
 
GROUP_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef
 
GROUP_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent
 
GROUP_FILTER_WELLS - Static variable in class ome.model.screen.Plate
 
GROUP_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
 
GROUP_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image
 
GROUP_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well
 
GROUP_ID - Static variable in class ome.parameters.Parameters
named parameter "groupId".
GROUP_IMMUTABLE - Static variable in class ome.model.internal.Permissions
R_R___ : user and group can only read
GROUP_PRIVATE - Static variable in class ome.model.internal.Permissions
RWRW__ : user and group can read and write
GROUP_READABLE - Static variable in class ome.model.internal.Permissions
RWR___ : user can read and write, group can read
GROUP_WRITEABLE - Static variable in class ome.model.internal.Permissions
RWRWR_ : user and group can read and write, world can read
groupExperimenterMap - Variable in class ome.model.meta.Experimenter
 
GROUPEXPERIMENTERMAP - Static variable in class ome.model.meta.Experimenter
 
groupExperimenterMap - Variable in class ome.model.meta.ExperimenterGroup
 
GROUPEXPERIMENTERMAP - Static variable in class ome.model.meta.ExperimenterGroup
 
GroupExperimenterMap - Class in ome.model.meta
 
GroupExperimenterMap() - Constructor for class ome.model.meta.GroupExperimenterMap
 
GroupExperimenterMap(Long) - Constructor for class ome.model.meta.GroupExperimenterMap
 
GroupExperimenterMap(Long, boolean) - Constructor for class ome.model.meta.GroupExperimenterMap
Main constructor.
GroupExperimenterMap(IObject, IObject, Boolean) - Constructor for class ome.model.meta.GroupExperimenterMap
 
GroupExperimenterMap.Details - Class in ome.model.meta
 
groupId - Variable in class ome.util.SqlAction.DeleteLog
 
groupInfoFor(String, long) - Method in interface ome.util.SqlAction
Return a mostly unloaded ExperimenterGroup object containing only the id, name, and permissions.
groupInfoFor(String, long) - Method in class ome.util.SqlAction.Impl
 
groupname - Variable in class ome.model.jobs.Job
 
GROUPNAME - Static variable in class ome.model.jobs.Job
 
GroupSecurityViolation - Exception in ome.conditions
Extension of SecurityViolation which signifies that the violation in question goes against the group-based permissions introduced in 4.2.
GroupSecurityViolation(String) - Constructor for exception ome.conditions.GroupSecurityViolation
 
grp(long) - Method in class ome.parameters.Parameters
 

H

handlePotentialPgArrayJarError(UncategorizedSQLException) - Method in class ome.util.actions.PostgresSqlAction
If postgresql is installed with an older jdbc jar that is on the bootstrap classpath, then it's possible that the use of pgarrays will fail (I think).
hash - Variable in class ome.model.core.OriginalFile
 
HASH - Static variable in class ome.model.core.OriginalFile
 
hashCode() - Method in class ome.model.enums.AcquisitionMode
 
hashCode() - Method in class ome.model.enums.AdminPrivilege
 
hashCode() - Method in class ome.model.enums.ArcType
 
hashCode() - Method in class ome.model.enums.Binning
 
hashCode() - Method in class ome.model.enums.ChecksumAlgorithm
 
hashCode() - Method in class ome.model.enums.ContrastMethod
 
hashCode() - Method in class ome.model.enums.Correction
 
hashCode() - Method in class ome.model.enums.DetectorType
 
hashCode() - Method in class ome.model.enums.DimensionOrder
 
hashCode() - Method in class ome.model.enums.EventType
 
hashCode() - Method in class ome.model.enums.ExperimentType
 
hashCode() - Method in class ome.model.enums.Family
 
hashCode() - Method in class ome.model.enums.FilamentType
 
hashCode() - Method in class ome.model.enums.FilterType
 
hashCode() - Method in class ome.model.enums.Format
 
hashCode() - Method in class ome.model.enums.Illumination
 
hashCode() - Method in class ome.model.enums.Immersion
 
hashCode() - Method in class ome.model.enums.LaserMedium
 
hashCode() - Method in class ome.model.enums.LaserType
 
hashCode() - Method in class ome.model.enums.Medium
 
hashCode() - Method in class ome.model.enums.MicrobeamManipulationType
 
hashCode() - Method in class ome.model.enums.MicroscopeType
 
hashCode() - Method in class ome.model.enums.PhotometricInterpretation
 
hashCode() - Method in class ome.model.enums.PixelsType
 
hashCode() - Method in class ome.model.enums.ProjectionAxis
 
hashCode() - Method in class ome.model.enums.ProjectionType
 
hashCode() - Method in class ome.model.enums.Pulse
 
hashCode() - Method in class ome.model.enums.RenderingModel
 
hashCode() - Method in class ome.model.internal.NamedValue
 
hashCode() - Method in class ome.model.jobs.JobStatus
 
hashCode() - Method in class ome.model.units.ElectricPotential
 
hashCode() - Method in class ome.model.units.Frequency
 
hashCode(Object) - Method in class ome.model.units.GenericEnumType
 
hashCode() - Method in class ome.model.units.Length
 
hashCode() - Method in class ome.model.units.Power
 
hashCode() - Method in class ome.model.units.Pressure
 
hashCode() - Method in class ome.model.units.Temperature
 
hashCode() - Method in class ome.model.units.Time
 
hashCode() - Method in class ome.parameters.QueryParameter
 
hashCode() - Method in class ome.util.LSID
 
hasher - Variable in class ome.model.core.OriginalFile
 
HASHER - Static variable in class ome.model.core.OriginalFile
 
hasNext() - Method in class ome.util.EmptyIterator
 
hasntSeen(Object) - Method in class ome.util.ContextFilter
 
hasToken() - Method in class ome.model.internal.GraphHolder
tests if this GraphHolder contains a Token reference.
hasUnicodeUnits() - Method in interface ome.util.SqlAction
 
hasUnicodeUnits() - Method in class ome.util.SqlAction.Impl
 
height - Variable in class ome.model.roi.Mask
 
HEIGHT - Static variable in class ome.model.roi.Mask
 
height - Variable in class ome.model.roi.Rectangle
 
HEIGHT - Static variable in class ome.model.roi.Rectangle
 
humidity - Variable in class ome.model.acquisition.ImagingEnvironment
 
HUMIDITY - Static variable in class ome.model.acquisition.ImagingEnvironment
 

I

IAnnotated - Interface in ome.model
 
IAnnotationLink - Interface in ome.model
extension of ILink for marking links whose child field is an Annotation.
ID - Static variable in class ome.model.acquisition.Detector
 
id - Variable in class ome.model.acquisition.Detector
 
ID - Static variable in class ome.model.acquisition.DetectorSettings
 
id - Variable in class ome.model.acquisition.DetectorSettings
 
ID - Static variable in class ome.model.acquisition.Dichroic
 
id - Variable in class ome.model.acquisition.Dichroic
 
ID - Static variable in class ome.model.acquisition.Filter
 
id - Variable in class ome.model.acquisition.Filter
 
ID - Static variable in class ome.model.acquisition.FilterSet
 
id - Variable in class ome.model.acquisition.FilterSet
 
ID - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
id - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
ID - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
id - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
ID - Static variable in class ome.model.acquisition.ImagingEnvironment
 
id - Variable in class ome.model.acquisition.ImagingEnvironment
 
ID - Static variable in class ome.model.acquisition.Instrument
 
id - Variable in class ome.model.acquisition.Instrument
 
ID - Static variable in class ome.model.acquisition.LightPath
 
id - Variable in class ome.model.acquisition.LightPath
 
ID - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
id - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
ID - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
id - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
ID - Static variable in class ome.model.acquisition.LightSettings
 
id - Variable in class ome.model.acquisition.LightSettings
 
ID - Static variable in class ome.model.acquisition.LightSource
 
id - Variable in class ome.model.acquisition.LightSource
 
ID - Static variable in class ome.model.acquisition.Microscope
 
id - Variable in class ome.model.acquisition.Microscope
 
ID - Static variable in class ome.model.acquisition.Objective
 
id - Variable in class ome.model.acquisition.Objective
 
ID - Static variable in class ome.model.acquisition.ObjectiveSettings
 
id - Variable in class ome.model.acquisition.ObjectiveSettings
 
ID - Static variable in class ome.model.acquisition.OTF
 
id - Variable in class ome.model.acquisition.OTF
 
ID - Static variable in class ome.model.acquisition.StageLabel
 
id - Variable in class ome.model.acquisition.StageLabel
 
ID - Static variable in class ome.model.acquisition.TransmittanceRange
 
id - Variable in class ome.model.acquisition.TransmittanceRange
 
ID - Static variable in class ome.model.annotations.Annotation
 
id - Variable in class ome.model.annotations.Annotation
 
ID - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
id - Variable in class ome.model.annotations.AnnotationAnnotationLink
 
ID - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
id - Variable in class ome.model.annotations.ChannelAnnotationLink
 
ID - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
id - Variable in class ome.model.annotations.DatasetAnnotationLink
 
ID - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
id - Variable in class ome.model.annotations.DetectorAnnotationLink
 
ID - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
id - Variable in class ome.model.annotations.DichroicAnnotationLink
 
ID - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
id - Variable in class ome.model.annotations.ExperimenterAnnotationLink
 
ID - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
id - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
ID - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
id - Variable in class ome.model.annotations.FilesetAnnotationLink
 
ID - Static variable in class ome.model.annotations.FilterAnnotationLink
 
id - Variable in class ome.model.annotations.FilterAnnotationLink
 
ID - Static variable in class ome.model.annotations.FolderAnnotationLink
 
id - Variable in class ome.model.annotations.FolderAnnotationLink
 
ID - Static variable in class ome.model.annotations.ImageAnnotationLink
 
id - Variable in class ome.model.annotations.ImageAnnotationLink
 
ID - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
id - Variable in class ome.model.annotations.InstrumentAnnotationLink
 
ID - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
id - Variable in class ome.model.annotations.LightPathAnnotationLink
 
ID - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
id - Variable in class ome.model.annotations.LightSourceAnnotationLink
 
ID - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
id - Variable in class ome.model.annotations.NamespaceAnnotationLink
 
ID - Static variable in class ome.model.annotations.NodeAnnotationLink
 
id - Variable in class ome.model.annotations.NodeAnnotationLink
 
ID - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
id - Variable in class ome.model.annotations.ObjectiveAnnotationLink
 
ID - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
id - Variable in class ome.model.annotations.OriginalFileAnnotationLink
 
ID - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
id - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
ID - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
id - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
ID - Static variable in class ome.model.annotations.PlateAnnotationLink
 
id - Variable in class ome.model.annotations.PlateAnnotationLink
 
ID - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
id - Variable in class ome.model.annotations.ProjectAnnotationLink
 
ID - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
id - Variable in class ome.model.annotations.ReagentAnnotationLink
 
ID - Static variable in class ome.model.annotations.RoiAnnotationLink
 
id - Variable in class ome.model.annotations.RoiAnnotationLink
 
ID - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
id - Variable in class ome.model.annotations.ScreenAnnotationLink
 
ID - Static variable in class ome.model.annotations.SessionAnnotationLink
 
id - Variable in class ome.model.annotations.SessionAnnotationLink
 
ID - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
id - Variable in class ome.model.annotations.ShapeAnnotationLink
 
ID - Static variable in class ome.model.annotations.WellAnnotationLink
 
id - Variable in class ome.model.annotations.WellAnnotationLink
 
ID - Static variable in class ome.model.containers.Dataset
 
id - Variable in class ome.model.containers.Dataset
 
ID - Static variable in class ome.model.containers.DatasetImageLink
 
id - Variable in class ome.model.containers.DatasetImageLink
 
ID - Static variable in class ome.model.containers.Folder
 
id - Variable in class ome.model.containers.Folder
 
ID - Static variable in class ome.model.containers.FolderImageLink
 
id - Variable in class ome.model.containers.FolderImageLink
 
ID - Static variable in class ome.model.containers.FolderRoiLink
 
id - Variable in class ome.model.containers.FolderRoiLink
 
ID - Static variable in class ome.model.containers.Project
 
id - Variable in class ome.model.containers.Project
 
ID - Static variable in class ome.model.containers.ProjectDatasetLink
 
id - Variable in class ome.model.containers.ProjectDatasetLink
 
ID - Static variable in class ome.model.core.Channel
 
id - Variable in class ome.model.core.Channel
 
ID - Static variable in class ome.model.core.Image
 
id - Variable in class ome.model.core.Image
 
ID - Static variable in class ome.model.core.LogicalChannel
 
id - Variable in class ome.model.core.LogicalChannel
 
ID - Static variable in class ome.model.core.OriginalFile
 
id - Variable in class ome.model.core.OriginalFile
 
ID - Static variable in class ome.model.core.Pixels
 
id - Variable in class ome.model.core.Pixels
 
ID - Static variable in class ome.model.core.PixelsOriginalFileMap
 
id - Variable in class ome.model.core.PixelsOriginalFileMap
 
ID - Static variable in class ome.model.core.PlaneInfo
 
id - Variable in class ome.model.core.PlaneInfo
 
ID - Static variable in class ome.model.display.ChannelBinding
 
id - Variable in class ome.model.display.ChannelBinding
 
ID - Static variable in class ome.model.display.CodomainMapContext
 
id - Variable in class ome.model.display.CodomainMapContext
 
ID - Static variable in class ome.model.display.ProjectionDef
 
id - Variable in class ome.model.display.ProjectionDef
 
ID - Static variable in class ome.model.display.QuantumDef
 
id - Variable in class ome.model.display.QuantumDef
 
ID - Static variable in class ome.model.display.RenderingDef
 
id - Variable in class ome.model.display.RenderingDef
 
ID - Static variable in class ome.model.display.Thumbnail
 
id - Variable in class ome.model.display.Thumbnail
 
ID - Static variable in class ome.model.enums.AcquisitionMode
 
id - Variable in class ome.model.enums.AcquisitionMode
 
ID - Static variable in class ome.model.enums.AdminPrivilege
 
id - Variable in class ome.model.enums.AdminPrivilege
 
ID - Static variable in class ome.model.enums.ArcType
 
id - Variable in class ome.model.enums.ArcType
 
ID - Static variable in class ome.model.enums.Binning
 
id - Variable in class ome.model.enums.Binning
 
ID - Static variable in class ome.model.enums.ChecksumAlgorithm
 
id - Variable in class ome.model.enums.ChecksumAlgorithm
 
ID - Static variable in class ome.model.enums.ContrastMethod
 
id - Variable in class ome.model.enums.ContrastMethod
 
ID - Static variable in class ome.model.enums.Correction
 
id - Variable in class ome.model.enums.Correction
 
ID - Static variable in class ome.model.enums.DetectorType
 
id - Variable in class ome.model.enums.DetectorType
 
ID - Static variable in class ome.model.enums.DimensionOrder
 
id - Variable in class ome.model.enums.DimensionOrder
 
ID - Static variable in class ome.model.enums.EventType
 
id - Variable in class ome.model.enums.EventType
 
ID - Static variable in class ome.model.enums.ExperimentType
 
id - Variable in class ome.model.enums.ExperimentType
 
ID - Static variable in class ome.model.enums.Family
 
id - Variable in class ome.model.enums.Family
 
ID - Static variable in class ome.model.enums.FilamentType
 
id - Variable in class ome.model.enums.FilamentType
 
ID - Static variable in class ome.model.enums.FilterType
 
id - Variable in class ome.model.enums.FilterType
 
ID - Static variable in class ome.model.enums.Format
 
id - Variable in class ome.model.enums.Format
 
ID - Static variable in class ome.model.enums.Illumination
 
id - Variable in class ome.model.enums.Illumination
 
ID - Static variable in class ome.model.enums.Immersion
 
id - Variable in class ome.model.enums.Immersion
 
ID - Static variable in class ome.model.enums.LaserMedium
 
id - Variable in class ome.model.enums.LaserMedium
 
ID - Static variable in class ome.model.enums.LaserType
 
id - Variable in class ome.model.enums.LaserType
 
ID - Static variable in class ome.model.enums.Medium
 
id - Variable in class ome.model.enums.Medium
 
ID - Static variable in class ome.model.enums.MicrobeamManipulationType
 
id - Variable in class ome.model.enums.MicrobeamManipulationType
 
ID - Static variable in class ome.model.enums.MicroscopeType
 
id - Variable in class ome.model.enums.MicroscopeType
 
ID - Static variable in class ome.model.enums.PhotometricInterpretation
 
id - Variable in class ome.model.enums.PhotometricInterpretation
 
ID - Static variable in class ome.model.enums.PixelsType
 
id - Variable in class ome.model.enums.PixelsType
 
ID - Static variable in class ome.model.enums.ProjectionAxis
 
id - Variable in class ome.model.enums.ProjectionAxis
 
ID - Static variable in class ome.model.enums.ProjectionType
 
id - Variable in class ome.model.enums.ProjectionType
 
ID - Static variable in class ome.model.enums.Pulse
 
id - Variable in class ome.model.enums.Pulse
 
ID - Static variable in class ome.model.enums.RenderingModel
 
id - Variable in class ome.model.enums.RenderingModel
 
ID - Static variable in class ome.model.experiment.Experiment
 
id - Variable in class ome.model.experiment.Experiment
 
ID - Static variable in class ome.model.experiment.MicrobeamManipulation
 
id - Variable in class ome.model.experiment.MicrobeamManipulation
 
ID - Static variable in class ome.model.fs.Fileset
 
id - Variable in class ome.model.fs.Fileset
 
ID - Static variable in class ome.model.fs.FilesetEntry
 
id - Variable in class ome.model.fs.FilesetEntry
 
ID - Static variable in class ome.model.fs.FilesetJobLink
 
id - Variable in class ome.model.fs.FilesetJobLink
 
ID - Static variable in class ome.model.internal.Link
 
id - Variable in class ome.model.internal.Link
 
ID - Static variable in class ome.model.jobs.Job
 
id - Variable in class ome.model.jobs.Job
 
ID - Static variable in class ome.model.jobs.JobOriginalFileLink
 
id - Variable in class ome.model.jobs.JobOriginalFileLink
 
ID - Static variable in class ome.model.jobs.JobStatus
 
id - Variable in class ome.model.jobs.JobStatus
 
ID - Static variable in class ome.model.meta.DBPatch
 
id - Variable in class ome.model.meta.DBPatch
 
ID - Static variable in class ome.model.meta.Event
 
id - Variable in class ome.model.meta.Event
 
ID - Static variable in class ome.model.meta.EventLog
 
id - Variable in class ome.model.meta.EventLog
 
ID - Static variable in class ome.model.meta.Experimenter
 
id - Variable in class ome.model.meta.Experimenter
 
ID - Static variable in class ome.model.meta.ExperimenterGroup
 
id - Variable in class ome.model.meta.ExperimenterGroup
 
ID - Static variable in class ome.model.meta.ExternalInfo
 
id - Variable in class ome.model.meta.ExternalInfo
 
ID - Static variable in class ome.model.meta.GroupExperimenterMap
 
id - Variable in class ome.model.meta.GroupExperimenterMap
 
ID - Static variable in class ome.model.meta.Namespace
 
id - Variable in class ome.model.meta.Namespace
 
ID - Static variable in class ome.model.meta.Node
 
id - Variable in class ome.model.meta.Node
 
ID - Static variable in class ome.model.meta.Session
 
id - Variable in class ome.model.meta.Session
 
ID - Static variable in class ome.model.meta.ShareMember
 
id - Variable in class ome.model.meta.ShareMember
 
ID - Static variable in class ome.model.roi.AffineTransform
 
id - Variable in class ome.model.roi.AffineTransform
 
ID - Static variable in class ome.model.roi.Roi
 
id - Variable in class ome.model.roi.Roi
 
ID - Static variable in class ome.model.roi.Shape
 
id - Variable in class ome.model.roi.Shape
 
ID - Static variable in class ome.model.screen.Plate
 
id - Variable in class ome.model.screen.Plate
 
ID - Static variable in class ome.model.screen.PlateAcquisition
 
id - Variable in class ome.model.screen.PlateAcquisition
 
ID - Static variable in class ome.model.screen.Reagent
 
id - Variable in class ome.model.screen.Reagent
 
ID - Static variable in class ome.model.screen.Screen
 
id - Variable in class ome.model.screen.Screen
 
ID - Static variable in class ome.model.screen.ScreenPlateLink
 
id - Variable in class ome.model.screen.ScreenPlateLink
 
ID - Static variable in class ome.model.screen.Well
 
id - Variable in class ome.model.screen.Well
 
ID - Static variable in class ome.model.screen.WellReagentLink
 
id - Variable in class ome.model.screen.WellReagentLink
 
ID - Static variable in class ome.model.screen.WellSample
 
id - Variable in class ome.model.screen.WellSample
 
ID - Static variable in class ome.model.stats.StatsInfo
 
id - Variable in class ome.model.stats.StatsInfo
 
ID - Static variable in class ome.parameters.Parameters
named parameter "id".
IdBlock - Class in ome.util
CBlock implementation which collects ids from IObjects
IdBlock() - Constructor for class ome.util.IdBlock
 
identical(Permissions) - Method in class ome.model.internal.Permissions
two Permissions instances are identical if they have the same bit representation.
IDetails - Interface in ome.model
simple interface for Details; currently unused.
IdRowMapper() - Constructor for class ome.util.SqlAction.IdRowMapper
 
IDS - Static variable in class ome.parameters.Parameters
named parameter "ids".
IEnum - Interface in ome.model
interface for all domain enumarations.
IGlobal - Interface in ome.model
marker interface for all global types, which have no IDetails fields other than permissions.
ILink - Interface in ome.model
extension of IObject for building object hierarchies.
illumination - Variable in class ome.model.core.LogicalChannel
 
ILLUMINATION - Static variable in class ome.model.core.LogicalChannel
 
Illumination - Class in ome.model.enums
 
Illumination() - Constructor for class ome.model.enums.Illumination
 
Illumination(Long) - Constructor for class ome.model.enums.Illumination
 
Illumination(Long, boolean) - Constructor for class ome.model.enums.Illumination
Main constructor.
Illumination(String) - Constructor for class ome.model.enums.Illumination
 
Illumination.Details - Class in ome.model.enums
 
Image - Class in ome.model.core
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Image() - Constructor for class ome.model.core.Image
 
Image(Long) - Constructor for class ome.model.core.Image
 
Image(Long, boolean) - Constructor for class ome.model.core.Image
Main constructor.
Image(String) - Constructor for class ome.model.core.Image
 
image - Variable in class ome.model.core.Pixels
 
IMAGE - Static variable in class ome.model.core.Pixels
 
image - Variable in class ome.model.roi.Roi
 
IMAGE - Static variable in class ome.model.roi.Roi
 
image - Variable in class ome.model.screen.WellSample
 
IMAGE - Static variable in class ome.model.screen.WellSample
 
Image.Details - Class in ome.model.core
 
ImageAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ImageAnnotationLink() - Constructor for class ome.model.annotations.ImageAnnotationLink
 
ImageAnnotationLink(Long) - Constructor for class ome.model.annotations.ImageAnnotationLink
 
ImageAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ImageAnnotationLink
Main constructor.
ImageAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ImageAnnotationLink
 
ImageAnnotationLink.Details - Class in ome.model.annotations
 
imageDescription - Variable in class ome.model.jobs.ImportJob
Deprecated.
 
IMAGEDESCRIPTION - Static variable in class ome.model.jobs.ImportJob
Deprecated.
 
imageLinks - Variable in class ome.model.containers.Dataset
 
IMAGELINKS - Static variable in class ome.model.containers.Dataset
 
imageLinks - Variable in class ome.model.containers.Folder
 
IMAGELINKS - Static variable in class ome.model.containers.Folder
 
IMAGELINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset
 
IMAGELINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder
 
imageName - Variable in class ome.model.jobs.ImportJob
Deprecated.
 
IMAGENAME - Static variable in class ome.model.jobs.ImportJob
Deprecated.
 
images - Variable in class ome.model.fs.Fileset
 
IMAGES - Static variable in class ome.model.fs.Fileset
 
ImageUtil - Class in ome.util
Provides helper methods for performing various things on image data.
ImageUtil() - Constructor for class ome.util.ImageUtil
 
ImagingEnvironment - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ImagingEnvironment() - Constructor for class ome.model.acquisition.ImagingEnvironment
 
ImagingEnvironment(Long) - Constructor for class ome.model.acquisition.ImagingEnvironment
 
ImagingEnvironment(Long, boolean) - Constructor for class ome.model.acquisition.ImagingEnvironment
Main constructor.
imagingEnvironment - Variable in class ome.model.core.Image
 
IMAGINGENVIRONMENT - Static variable in class ome.model.core.Image
 
ImagingEnvironment.Details - Class in ome.model.acquisition
 
immersion - Variable in class ome.model.acquisition.Objective
 
IMMERSION - Static variable in class ome.model.acquisition.Objective
 
Immersion - Class in ome.model.enums
 
Immersion() - Constructor for class ome.model.enums.Immersion
 
Immersion(Long) - Constructor for class ome.model.enums.Immersion
 
Immersion(Long, boolean) - Constructor for class ome.model.enums.Immersion
Main constructor.
Immersion(String) - Constructor for class ome.model.enums.Immersion
 
Immersion.Details - Class in ome.model.enums
 
Impl() - Constructor for class ome.util.SqlAction.Impl
 
ImportJob - Class in ome.model.jobs
Deprecated.
ImportJob() - Constructor for class ome.model.jobs.ImportJob
Deprecated.
 
ImportJob(Long) - Constructor for class ome.model.jobs.ImportJob
Deprecated.
 
ImportJob(Long, boolean) - Constructor for class ome.model.jobs.ImportJob
Deprecated.
Main constructor.
ImportJob(String, String) - Constructor for class ome.model.jobs.ImportJob
Deprecated.
 
IMutable - Interface in ome.model
interface for all mutable domain objects.
in(String[]) - Method in class ome.util.PixelData
Returns whether or not the pixel data type is is one of the elements in an array.
increment() - Method in class ome.util.Counter
Increment the value of this counter by one.
IndexingJob - Class in ome.model.jobs
 
IndexingJob() - Constructor for class ome.model.jobs.IndexingJob
 
IndexingJob(Long) - Constructor for class ome.model.jobs.IndexingJob
 
IndexingJob(Long, boolean) - Constructor for class ome.model.jobs.IndexingJob
Main constructor.
inputEnd - Variable in class ome.model.display.ChannelBinding
 
INPUTEND - Static variable in class ome.model.display.ChannelBinding
 
inputStart - Variable in class ome.model.display.ChannelBinding
 
INPUTSTART - Static variable in class ome.model.display.ChannelBinding
 
insertCurrentAdminPrivileges(Iterable<AdminPrivilege>) - Method in class ome.util.SqlAction.Impl
 
insertCurrentAdminPrivileges(Iterable<AdminPrivilege>) - Method in interface ome.util.SqlAction
Insert the current light administrator privileges for the current transaction.
insertFormat(String) - Method in class ome.util.actions.PostgresSqlAction
Deprecated.
insertFormat(String) - Method in interface ome.util.SqlAction
Deprecated.
insertFormatSql - Static variable in class ome.util.actions.PostgresSqlAction
Deprecated.
insertLogs(List<Object[]>) - Method in class ome.util.actions.PostgresSqlAction
 
insertLogs(List<Object[]>) - Method in interface ome.util.SqlAction
 
insertRows(PersistentCollection, Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister
 
insertSession(Map<String, Object>) - Method in class ome.util.actions.PostgresSqlAction
 
insertSession(Map<String, Object>) - Method in interface ome.util.SqlAction
 
institution - Variable in class ome.model.meta.Experimenter
 
INSTITUTION - Static variable in class ome.model.meta.Experimenter
 
instrument - Variable in class ome.model.acquisition.Detector
 
INSTRUMENT - Static variable in class ome.model.acquisition.Detector
 
instrument - Variable in class ome.model.acquisition.Dichroic
 
INSTRUMENT - Static variable in class ome.model.acquisition.Dichroic
 
instrument - Variable in class ome.model.acquisition.Filter
 
INSTRUMENT - Static variable in class ome.model.acquisition.Filter
 
instrument - Variable in class ome.model.acquisition.FilterSet
 
INSTRUMENT - Static variable in class ome.model.acquisition.FilterSet
 
Instrument - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Instrument() - Constructor for class ome.model.acquisition.Instrument
 
Instrument(Long) - Constructor for class ome.model.acquisition.Instrument
 
Instrument(Long, boolean) - Constructor for class ome.model.acquisition.Instrument
Main constructor.
instrument - Variable in class ome.model.acquisition.LightSource
 
INSTRUMENT - Static variable in class ome.model.acquisition.LightSource
 
instrument - Variable in class ome.model.acquisition.Objective
 
INSTRUMENT - Static variable in class ome.model.acquisition.Objective
 
instrument - Variable in class ome.model.acquisition.OTF
 
INSTRUMENT - Static variable in class ome.model.acquisition.OTF
 
instrument - Variable in class ome.model.core.Image
 
INSTRUMENT - Static variable in class ome.model.core.Image
 
Instrument.Details - Class in ome.model.acquisition
 
InstrumentAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
InstrumentAnnotationLink() - Constructor for class ome.model.annotations.InstrumentAnnotationLink
 
InstrumentAnnotationLink(Long) - Constructor for class ome.model.annotations.InstrumentAnnotationLink
 
InstrumentAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.InstrumentAnnotationLink
Main constructor.
InstrumentAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.InstrumentAnnotationLink
 
InstrumentAnnotationLink.Details - Class in ome.model.annotations
 
Int(long) - Static method in class ome.model.units.Conversion
Static helper for creating Conversion.Int instances.
Int(String) - Static method in class ome.model.units.Conversion
Static helper for creating Conversion.Int instances.
Int(long) - Constructor for class ome.model.units.Conversion.Int
 
Int(String) - Constructor for class ome.model.units.Conversion.Int
 
INT - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
integration - Variable in class ome.model.acquisition.DetectorSettings
 
INTEGRATION - Static variable in class ome.model.acquisition.DetectorSettings
 
IntegrityCheckJob - Class in ome.model.jobs
 
IntegrityCheckJob() - Constructor for class ome.model.jobs.IntegrityCheckJob
 
IntegrityCheckJob(Long) - Constructor for class ome.model.jobs.IntegrityCheckJob
 
IntegrityCheckJob(Long, boolean) - Constructor for class ome.model.jobs.IntegrityCheckJob
Main constructor.
InternalException - Exception in ome.conditions
Catchall for unknown server exceptions.
InternalException(String) - Constructor for exception ome.conditions.InternalException
 
internalForm(Permissions) - Static method in class ome.util.Utils
Returns the internal representation of a Permissions object.
invalidate(String) - Method in class ome.util.Validation
 
invoke(MethodInvocation) - Method in class ome.util.SqlAction.LoggingSqlAction
 
IObject - Interface in ome.model
central model interface.
iris - Variable in class ome.model.acquisition.Objective
 
IRIS - Static variable in class ome.model.acquisition.Objective
 
isAcquisitionData() - Method in class ome.parameters.Parameters
 
isCache() - Method in class ome.parameters.Parameters
 
isDisallow(boolean[], int) - Static method in class ome.model.internal.Permissions
 
isDisallowAnnotate() - Method in class ome.model.internal.Permissions
 
isDisallowChgrp() - Method in class ome.model.internal.Permissions
 
isDisallowChown() - Method in class ome.model.internal.Permissions
 
isDisallowDelete() - Method in class ome.model.internal.Permissions
 
isDisallowEdit() - Method in class ome.model.internal.Permissions
 
isDisallowLink() - Method in class ome.model.internal.Permissions
 
isExperimenter() - Method in class ome.parameters.Parameters
 
isFileInRepo(String, long, Set<String>) - Method in class ome.util.SqlAction.Impl
 
isFileInRepo(String, long, Set<String>) - Method in interface ome.util.SqlAction
 
isFiltered(String) - Method in class ome.model.internal.Details
Was this collection filtered during creation? If so, it should not be saved to the DB.
isFloat - Variable in class ome.util.PixelData
If the data is floating point.
isFloat() - Method in class ome.util.PixelData
Returns whether or not the data is floating point.
isGranted(Permissions.Role, Permissions.Right) - Method in class ome.model.internal.Permissions
tests that a given Permissions.Role has the given Permissions.Right.
isGroup() - Method in class ome.parameters.Parameters
 
isLdapExperimenter(Long) - Method in class ome.util.SqlAction.Impl
 
isLdapExperimenter(Long) - Method in interface ome.util.SqlAction
Checks whether the specified experimenter ID has the ldap flag set.
isLeaves() - Method in class ome.parameters.Parameters
 
isLoaded() - Method in class ome.model.acquisition.Detector
 
isLoaded() - Method in class ome.model.acquisition.DetectorSettings
 
isLoaded() - Method in class ome.model.acquisition.Dichroic
 
isLoaded() - Method in class ome.model.acquisition.Filter
 
isLoaded() - Method in class ome.model.acquisition.FilterSet
 
isLoaded() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
isLoaded() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
isLoaded() - Method in class ome.model.acquisition.ImagingEnvironment
 
isLoaded() - Method in class ome.model.acquisition.Instrument
 
isLoaded() - Method in class ome.model.acquisition.LightPath
 
isLoaded() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
isLoaded() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
isLoaded() - Method in class ome.model.acquisition.LightSettings
 
isLoaded() - Method in class ome.model.acquisition.LightSource
 
isLoaded() - Method in class ome.model.acquisition.Microscope
 
isLoaded() - Method in class ome.model.acquisition.Objective
 
isLoaded() - Method in class ome.model.acquisition.ObjectiveSettings
 
isLoaded() - Method in class ome.model.acquisition.OTF
 
isLoaded() - Method in class ome.model.acquisition.StageLabel
 
isLoaded() - Method in class ome.model.acquisition.TransmittanceRange
 
isLoaded() - Method in class ome.model.annotations.Annotation
 
isLoaded() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.ChannelAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.DatasetAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.DetectorAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.DichroicAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.FilesetAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.FilterAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.FolderAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.ImageAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.LightPathAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.NodeAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.PlateAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.ProjectAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.ReagentAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.RoiAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.ScreenAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.SessionAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.ShapeAnnotationLink
 
isLoaded() - Method in class ome.model.annotations.WellAnnotationLink
 
isLoaded() - Method in class ome.model.containers.Dataset
 
isLoaded() - Method in class ome.model.containers.DatasetImageLink
 
isLoaded() - Method in class ome.model.containers.Folder
 
isLoaded() - Method in class ome.model.containers.FolderImageLink
 
isLoaded() - Method in class ome.model.containers.FolderRoiLink
 
isLoaded() - Method in class ome.model.containers.Project
 
isLoaded() - Method in class ome.model.containers.ProjectDatasetLink
 
isLoaded() - Method in class ome.model.core.Channel
 
isLoaded() - Method in class ome.model.core.Image
 
isLoaded() - Method in class ome.model.core.LogicalChannel
 
isLoaded() - Method in class ome.model.core.OriginalFile
 
isLoaded() - Method in class ome.model.core.Pixels
 
isLoaded() - Method in class ome.model.core.PixelsOriginalFileMap
 
isLoaded() - Method in class ome.model.core.PlaneInfo
 
isLoaded() - Method in class ome.model.display.ChannelBinding
 
isLoaded() - Method in class ome.model.display.CodomainMapContext
 
isLoaded() - Method in class ome.model.display.ProjectionDef
 
isLoaded() - Method in class ome.model.display.QuantumDef
 
isLoaded() - Method in class ome.model.display.RenderingDef
 
isLoaded() - Method in class ome.model.display.Thumbnail
 
isLoaded() - Method in class ome.model.enums.AcquisitionMode
 
isLoaded() - Method in class ome.model.enums.AdminPrivilege
 
isLoaded() - Method in class ome.model.enums.ArcType
 
isLoaded() - Method in class ome.model.enums.Binning
 
isLoaded() - Method in class ome.model.enums.ChecksumAlgorithm
 
isLoaded() - Method in class ome.model.enums.ContrastMethod
 
isLoaded() - Method in class ome.model.enums.Correction
 
isLoaded() - Method in class ome.model.enums.DetectorType
 
isLoaded() - Method in class ome.model.enums.DimensionOrder
 
isLoaded() - Method in class ome.model.enums.EventType
 
isLoaded() - Method in class ome.model.enums.ExperimentType
 
isLoaded() - Method in class ome.model.enums.Family
 
isLoaded() - Method in class ome.model.enums.FilamentType
 
isLoaded() - Method in class ome.model.enums.FilterType
 
isLoaded() - Method in class ome.model.enums.Format
 
isLoaded() - Method in class ome.model.enums.Illumination
 
isLoaded() - Method in class ome.model.enums.Immersion
 
isLoaded() - Method in class ome.model.enums.LaserMedium
 
isLoaded() - Method in class ome.model.enums.LaserType
 
isLoaded() - Method in class ome.model.enums.Medium
 
isLoaded() - Method in class ome.model.enums.MicrobeamManipulationType
 
isLoaded() - Method in class ome.model.enums.MicroscopeType
 
isLoaded() - Method in class ome.model.enums.PhotometricInterpretation
 
isLoaded() - Method in class ome.model.enums.PixelsType
 
isLoaded() - Method in class ome.model.enums.ProjectionAxis
 
isLoaded() - Method in class ome.model.enums.ProjectionType
 
isLoaded() - Method in class ome.model.enums.Pulse
 
isLoaded() - Method in class ome.model.enums.RenderingModel
 
isLoaded() - Method in class ome.model.experiment.Experiment
 
isLoaded() - Method in class ome.model.experiment.MicrobeamManipulation
 
isLoaded() - Method in class ome.model.fs.Fileset
 
isLoaded() - Method in class ome.model.fs.FilesetEntry
 
isLoaded() - Method in class ome.model.fs.FilesetJobLink
 
isLoaded() - Method in class ome.model.internal.Link
 
isLoaded() - Method in interface ome.model.IObject
transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
isLoaded() - Method in class ome.model.jobs.Job
 
isLoaded() - Method in class ome.model.jobs.JobOriginalFileLink
 
isLoaded() - Method in class ome.model.jobs.JobStatus
 
isLoaded() - Method in class ome.model.meta.DBPatch
 
isLoaded() - Method in class ome.model.meta.Event
 
isLoaded() - Method in class ome.model.meta.EventLog
 
isLoaded() - Method in class ome.model.meta.Experimenter
 
isLoaded() - Method in class ome.model.meta.ExperimenterGroup
 
isLoaded() - Method in class ome.model.meta.ExternalInfo
 
isLoaded() - Method in class ome.model.meta.GroupExperimenterMap
 
isLoaded() - Method in class ome.model.meta.Namespace
 
isLoaded() - Method in class ome.model.meta.Node
 
isLoaded() - Method in class ome.model.meta.Session
 
isLoaded() - Method in class ome.model.meta.ShareMember
 
isLoaded() - Method in class ome.model.roi.AffineTransform
 
isLoaded() - Method in class ome.model.roi.Roi
 
isLoaded() - Method in class ome.model.roi.Shape
 
isLoaded() - Method in class ome.model.screen.Plate
 
isLoaded() - Method in class ome.model.screen.PlateAcquisition
 
isLoaded() - Method in class ome.model.screen.Reagent
 
isLoaded() - Method in class ome.model.screen.Screen
 
isLoaded() - Method in class ome.model.screen.ScreenPlateLink
 
isLoaded() - Method in class ome.model.screen.Well
 
isLoaded() - Method in class ome.model.screen.WellReagentLink
 
isLoaded() - Method in class ome.model.screen.WellSample
 
isLoaded() - Method in class ome.model.stats.StatsInfo
 
isLoaded() - Method in class ome.util.PermDetails
 
isMutable() - Method in class ome.model.units.GenericEnumType
 
isOrphan() - Method in class ome.parameters.Parameters
 
isPagination() - Method in class ome.parameters.Parameters
 
isSet(Permissions.Flag) - Method in class ome.model.internal.Permissions
tests that a given Permissions.Flag is set.
isSigned - Variable in class ome.util.PixelData
If the data is signed.
isSigned() - Method in class ome.util.PixelData
Returns whether or not the data is signed.
isUnique() - Method in class ome.parameters.Filter
check uniqueness for this query.
isUnique() - Method in class ome.parameters.Parameters
 
isValid() - Method in class ome.model.acquisition.Arc
 
isValid() - Method in class ome.model.acquisition.Detector
 
isValid() - Method in class ome.model.acquisition.DetectorSettings
 
isValid() - Method in class ome.model.acquisition.Dichroic
 
isValid() - Method in class ome.model.acquisition.Filament
 
isValid() - Method in class ome.model.acquisition.Filter
 
isValid() - Method in class ome.model.acquisition.FilterSet
 
isValid() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
isValid() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
isValid() - Method in class ome.model.acquisition.GenericExcitationSource
 
isValid() - Method in class ome.model.acquisition.ImagingEnvironment
 
isValid() - Method in class ome.model.acquisition.Instrument
 
isValid() - Method in class ome.model.acquisition.Laser
 
isValid() - Method in class ome.model.acquisition.LightEmittingDiode
 
isValid() - Method in class ome.model.acquisition.LightPath
 
isValid() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
isValid() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
isValid() - Method in class ome.model.acquisition.LightSettings
 
isValid() - Method in class ome.model.acquisition.LightSource
 
isValid() - Method in class ome.model.acquisition.Microscope
 
isValid() - Method in class ome.model.acquisition.Objective
 
isValid() - Method in class ome.model.acquisition.ObjectiveSettings
 
isValid() - Method in class ome.model.acquisition.OTF
 
isValid() - Method in class ome.model.acquisition.StageLabel
 
isValid() - Method in class ome.model.acquisition.TransmittanceRange
 
isValid() - Method in class ome.model.annotations.Annotation
 
isValid() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
isValid() - Method in class ome.model.annotations.BasicAnnotation
 
isValid() - Method in class ome.model.annotations.BooleanAnnotation
 
isValid() - Method in class ome.model.annotations.ChannelAnnotationLink
 
isValid() - Method in class ome.model.annotations.CommentAnnotation
 
isValid() - Method in class ome.model.annotations.DatasetAnnotationLink
 
isValid() - Method in class ome.model.annotations.DetectorAnnotationLink
 
isValid() - Method in class ome.model.annotations.DichroicAnnotationLink
 
isValid() - Method in class ome.model.annotations.DoubleAnnotation
 
isValid() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
isValid() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
isValid() - Method in class ome.model.annotations.FileAnnotation
 
isValid() - Method in class ome.model.annotations.FilesetAnnotationLink
 
isValid() - Method in class ome.model.annotations.FilterAnnotationLink
 
isValid() - Method in class ome.model.annotations.FolderAnnotationLink
 
isValid() - Method in class ome.model.annotations.ImageAnnotationLink
 
isValid() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
isValid() - Method in class ome.model.annotations.LightPathAnnotationLink
 
isValid() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
isValid() - Method in class ome.model.annotations.ListAnnotation
 
isValid() - Method in class ome.model.annotations.LongAnnotation
 
isValid() - Method in class ome.model.annotations.MapAnnotation
 
isValid() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
isValid() - Method in class ome.model.annotations.NodeAnnotationLink
 
isValid() - Method in class ome.model.annotations.NumericAnnotation
 
isValid() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
isValid() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
isValid() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
isValid() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
isValid() - Method in class ome.model.annotations.PlateAnnotationLink
 
isValid() - Method in class ome.model.annotations.ProjectAnnotationLink
 
isValid() - Method in class ome.model.annotations.ReagentAnnotationLink
 
isValid() - Method in class ome.model.annotations.RoiAnnotationLink
 
isValid() - Method in class ome.model.annotations.ScreenAnnotationLink
 
isValid() - Method in class ome.model.annotations.SessionAnnotationLink
 
isValid() - Method in class ome.model.annotations.ShapeAnnotationLink
 
isValid() - Method in class ome.model.annotations.TagAnnotation
 
isValid() - Method in class ome.model.annotations.TermAnnotation
 
isValid() - Method in class ome.model.annotations.TextAnnotation
 
isValid() - Method in class ome.model.annotations.TimestampAnnotation
 
isValid() - Method in class ome.model.annotations.TypeAnnotation
 
isValid() - Method in class ome.model.annotations.WellAnnotationLink
 
isValid() - Method in class ome.model.annotations.XmlAnnotation
 
isValid() - Method in class ome.model.containers.Dataset
 
isValid() - Method in class ome.model.containers.DatasetImageLink
 
isValid() - Method in class ome.model.containers.Folder
 
isValid() - Method in class ome.model.containers.FolderImageLink
 
isValid() - Method in class ome.model.containers.FolderRoiLink
 
isValid() - Method in class ome.model.containers.Project
 
isValid() - Method in class ome.model.containers.ProjectDatasetLink
 
isValid() - Method in class ome.model.core.Channel
 
isValid() - Method in class ome.model.core.Image
 
isValid() - Method in class ome.model.core.LogicalChannel
 
isValid() - Method in class ome.model.core.OriginalFile
 
isValid() - Method in class ome.model.core.Pixels
 
isValid() - Method in class ome.model.core.PixelsOriginalFileMap
 
isValid() - Method in class ome.model.core.PlaneInfo
 
isValid() - Method in class ome.model.display.ChannelBinding
 
isValid() - Method in class ome.model.display.CodomainMapContext
 
isValid() - Method in class ome.model.display.ContrastStretchingContext
 
isValid() - Method in class ome.model.display.PlaneSlicingContext
 
isValid() - Method in class ome.model.display.ProjectionDef
 
isValid() - Method in class ome.model.display.QuantumDef
 
isValid() - Method in class ome.model.display.RenderingDef
 
isValid() - Method in class ome.model.display.ReverseIntensityContext
 
isValid() - Method in class ome.model.display.Thumbnail
 
isValid() - Method in class ome.model.enums.AcquisitionMode
 
isValid() - Method in class ome.model.enums.AdminPrivilege
 
isValid() - Method in class ome.model.enums.ArcType
 
isValid() - Method in class ome.model.enums.Binning
 
isValid() - Method in class ome.model.enums.ChecksumAlgorithm
 
isValid() - Method in class ome.model.enums.ContrastMethod
 
isValid() - Method in class ome.model.enums.Correction
 
isValid() - Method in class ome.model.enums.DetectorType
 
isValid() - Method in class ome.model.enums.DimensionOrder
 
isValid() - Method in class ome.model.enums.EventType
 
isValid() - Method in class ome.model.enums.ExperimentType
 
isValid() - Method in class ome.model.enums.Family
 
isValid() - Method in class ome.model.enums.FilamentType
 
isValid() - Method in class ome.model.enums.FilterType
 
isValid() - Method in class ome.model.enums.Format
 
isValid() - Method in class ome.model.enums.Illumination
 
isValid() - Method in class ome.model.enums.Immersion
 
isValid() - Method in class ome.model.enums.LaserMedium
 
isValid() - Method in class ome.model.enums.LaserType
 
isValid() - Method in class ome.model.enums.Medium
 
isValid() - Method in class ome.model.enums.MicrobeamManipulationType
 
isValid() - Method in class ome.model.enums.MicroscopeType
 
isValid() - Method in class ome.model.enums.PhotometricInterpretation
 
isValid() - Method in class ome.model.enums.PixelsType
 
isValid() - Method in class ome.model.enums.ProjectionAxis
 
isValid() - Method in class ome.model.enums.ProjectionType
 
isValid() - Method in class ome.model.enums.Pulse
 
isValid() - Method in class ome.model.enums.RenderingModel
 
isValid() - Method in class ome.model.experiment.Experiment
 
isValid() - Method in class ome.model.experiment.MicrobeamManipulation
 
isValid() - Method in class ome.model.fs.Fileset
 
isValid() - Method in class ome.model.fs.FilesetEntry
 
isValid() - Method in class ome.model.fs.FilesetJobLink
 
isValid() - Method in class ome.model.internal.Link
 
isValid() - Method in interface ome.model.IObject
calls the class-specific validator for this instance and returns the value from Validation.isValid()
isValid() - Method in class ome.model.jobs.ImportJob
Deprecated.
 
isValid() - Method in class ome.model.jobs.IndexingJob
 
isValid() - Method in class ome.model.jobs.IntegrityCheckJob
 
isValid() - Method in class ome.model.jobs.Job
 
isValid() - Method in class ome.model.jobs.JobOriginalFileLink
 
isValid() - Method in class ome.model.jobs.JobStatus
 
isValid() - Method in class ome.model.jobs.MetadataImportJob
 
isValid() - Method in class ome.model.jobs.ParseJob
 
isValid() - Method in class ome.model.jobs.PixelDataJob
 
isValid() - Method in class ome.model.jobs.ScriptJob
 
isValid() - Method in class ome.model.jobs.ThumbnailGenerationJob
 
isValid() - Method in class ome.model.jobs.UploadJob
 
isValid() - Method in class ome.model.meta.DBPatch
 
isValid() - Method in class ome.model.meta.Event
 
isValid() - Method in class ome.model.meta.EventLog
 
isValid() - Method in class ome.model.meta.Experimenter
 
isValid() - Method in class ome.model.meta.ExperimenterGroup
 
isValid() - Method in class ome.model.meta.ExternalInfo
 
isValid() - Method in class ome.model.meta.GroupExperimenterMap
 
isValid() - Method in class ome.model.meta.Namespace
 
isValid() - Method in class ome.model.meta.Node
 
isValid() - Method in class ome.model.meta.Session
 
isValid() - Method in class ome.model.meta.Share
 
isValid() - Method in class ome.model.meta.ShareMember
 
isValid() - Method in class ome.model.roi.AffineTransform
 
isValid() - Method in class ome.model.roi.Ellipse
 
isValid() - Method in class ome.model.roi.Label
 
isValid() - Method in class ome.model.roi.Line
 
isValid() - Method in class ome.model.roi.Mask
 
isValid() - Method in class ome.model.roi.Path
Deprecated.
 
isValid() - Method in class ome.model.roi.Point
 
isValid() - Method in class ome.model.roi.Polygon
 
isValid() - Method in class ome.model.roi.Polyline
 
isValid() - Method in class ome.model.roi.Rectangle
 
isValid() - Method in class ome.model.roi.Roi
 
isValid() - Method in class ome.model.roi.Shape
 
isValid() - Method in class ome.model.screen.Plate
 
isValid() - Method in class ome.model.screen.PlateAcquisition
 
isValid() - Method in class ome.model.screen.Reagent
 
isValid() - Method in class ome.model.screen.Screen
 
isValid() - Method in class ome.model.screen.ScreenPlateLink
 
isValid() - Method in class ome.model.screen.Well
 
isValid() - Method in class ome.model.screen.WellReagentLink
 
isValid() - Method in class ome.model.screen.WellSample
 
isValid() - Method in class ome.model.stats.StatsInfo
 
isValid() - Method in class ome.util.PermDetails
 
isValid() - Method in class ome.util.Validation
 
itemCount - Variable in class ome.model.meta.Share
 
ITEMCOUNT - Static variable in class ome.model.meta.Share
 
iterateAnnotationLinks() - Method in class ome.model.acquisition.Detector
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.Dichroic
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.Filter
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.Instrument
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.LightPath
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.LightSource
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.acquisition.Objective
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.annotations.Annotation
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.containers.Dataset
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.containers.Folder
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.containers.Project
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.core.Channel
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.core.Image
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.core.OriginalFile
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.core.PlaneInfo
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.fs.Fileset
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in interface ome.model.IAnnotated
 
iterateAnnotationLinks() - Method in class ome.model.meta.Experimenter
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.meta.Namespace
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.meta.Node
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.meta.Session
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.roi.Roi
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.roi.Shape
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.screen.Plate
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.screen.Reagent
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.screen.Screen
should be used rather than accessing the annotationLinks set directly.
iterateAnnotationLinks() - Method in class ome.model.screen.Well
should be used rather than accessing the annotationLinks set directly.
iterateChannels() - Method in class ome.model.core.LogicalChannel
should be used rather than accessing the channels set directly.
iterateChannels() - Method in class ome.model.core.Pixels
should be used rather than accessing the channels set directly.
iterateChildFolders() - Method in class ome.model.containers.Folder
should be used rather than accessing the childFolders set directly.
iterateDatasetLinks() - Method in class ome.model.containers.Project
should be used rather than accessing the datasetLinks set directly.
iterateDatasetLinks() - Method in class ome.model.core.Image
should be used rather than accessing the datasetLinks set directly.
iterateDetector() - Method in class ome.model.acquisition.Instrument
should be used rather than accessing the detector set directly.
iterateDichroic() - Method in class ome.model.acquisition.Instrument
should be used rather than accessing the dichroic set directly.
iterateEmissionFilterLink() - Method in class ome.model.acquisition.Filter
should be used rather than accessing the emissionFilterLink set directly.
iterateEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet
should be used rather than accessing the emissionFilterLink set directly.
iterateEmissionFilterLink() - Method in class ome.model.acquisition.LightPath
should be used rather than accessing the emissionFilterLink set directly.
iterateEvents() - Method in class ome.model.meta.Session
should be used rather than accessing the events set directly.
iterateExcitationFilterLink() - Method in class ome.model.acquisition.Filter
should be used rather than accessing the excitationFilterLink set directly.
iterateExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet
should be used rather than accessing the excitationFilterLink set directly.
iterateExcitationFilterLink() - Method in class ome.model.acquisition.LightPath
should be used rather than accessing the excitationFilterLink set directly.
iterateFilesetEntries() - Method in class ome.model.core.OriginalFile
should be used rather than accessing the filesetEntries set directly.
iterateFilter() - Method in class ome.model.acquisition.Instrument
should be used rather than accessing the filter set directly.
iterateFilterSet() - Method in class ome.model.acquisition.Instrument
should be used rather than accessing the filterSet set directly.
iterateFolderLinks() - Method in class ome.model.core.Image
should be used rather than accessing the folderLinks set directly.
iterateFolderLinks() - Method in class ome.model.roi.Roi
should be used rather than accessing the folderLinks set directly.
iterateGroupExperimenterMap() - Method in class ome.model.meta.Experimenter
should be used rather than accessing the groupExperimenterMap set directly.
iterateGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup
should be used rather than accessing the groupExperimenterMap set directly.
iterateImageLinks() - Method in class ome.model.containers.Dataset
should be used rather than accessing the imageLinks set directly.
iterateImageLinks() - Method in class ome.model.containers.Folder
should be used rather than accessing the imageLinks set directly.
iterateImages() - Method in class ome.model.fs.Fileset
should be used rather than accessing the images set directly.
iterateJobLinks() - Method in class ome.model.fs.Fileset
should be used rather than accessing the jobLinks set directly.
iterateLightSource() - Method in class ome.model.acquisition.Instrument
should be used rather than accessing the lightSource set directly.
iterateLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation
should be used rather than accessing the lightSourceSettings set directly.
iterateLogs() - Method in class ome.model.meta.Event
should be used rather than accessing the logs set directly.
iterateMicrobeamManipulation() - Method in class ome.model.experiment.Experiment
should be used rather than accessing the microbeamManipulation set directly.
iterateObjective() - Method in class ome.model.acquisition.Instrument
should be used rather than accessing the objective set directly.
iterateOriginalFileLinks() - Method in class ome.model.jobs.Job
should be used rather than accessing the originalFileLinks set directly.
iterateOtf() - Method in class ome.model.acquisition.Instrument
should be used rather than accessing the otf set directly.
iteratePixels() - Method in class ome.model.core.Image
should be used rather than accessing the pixels set directly.
iteratePixelsFileMaps() - Method in class ome.model.core.OriginalFile
should be used rather than accessing the pixelsFileMaps set directly.
iteratePixelsFileMaps() - Method in class ome.model.core.Pixels
should be used rather than accessing the pixelsFileMaps set directly.
iteratePlaneInfo() - Method in class ome.model.core.Pixels
should be used rather than accessing the planeInfo set directly.
iteratePlateAcquisitions() - Method in class ome.model.screen.Plate
should be used rather than accessing the plateAcquisitions set directly.
iteratePlateLinks() - Method in class ome.model.screen.Screen
should be used rather than accessing the plateLinks set directly.
iterateProjections() - Method in class ome.model.display.RenderingDef
should be used rather than accessing the projections set directly.
iterateProjectLinks() - Method in class ome.model.containers.Dataset
should be used rather than accessing the projectLinks set directly.
iterateReagentLinks() - Method in class ome.model.screen.Well
should be used rather than accessing the reagentLinks set directly.
iterateReagents() - Method in class ome.model.screen.Screen
should be used rather than accessing the reagents set directly.
iterateRoiLinks() - Method in class ome.model.containers.Folder
should be used rather than accessing the roiLinks set directly.
iterateRois() - Method in class ome.model.core.Image
should be used rather than accessing the rois set directly.
iterateScreenLinks() - Method in class ome.model.screen.Plate
should be used rather than accessing the screenLinks set directly.
iterateSessions() - Method in class ome.model.meta.Node
should be used rather than accessing the sessions set directly.
iterateSettings() - Method in class ome.model.core.Pixels
should be used rather than accessing the settings set directly.
iterateShapes() - Method in class ome.model.roi.Roi
should be used rather than accessing the shapes set directly.
iterateSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding
should be used rather than accessing the spatialDomainEnhancement set directly.
iterateThumbnails() - Method in class ome.model.core.Pixels
should be used rather than accessing the thumbnails set directly.
iterateUsedFiles() - Method in class ome.model.fs.Fileset
should be used rather than accessing the usedFiles set directly.
iterateWaveRendering() - Method in class ome.model.display.RenderingDef
should be used rather than accessing the waveRendering set directly.
iterateWellLinks() - Method in class ome.model.screen.Reagent
should be used rather than accessing the wellLinks set directly.
iterateWells() - Method in class ome.model.screen.Plate
should be used rather than accessing the wells set directly.
iterateWellSample() - Method in class ome.model.screen.PlateAcquisition
should be used rather than accessing the wellSample set directly.
iterateWellSamples() - Method in class ome.model.core.Image
should be used rather than accessing the wellSamples set directly.
iterateWellSamples() - Method in class ome.model.screen.Well
should be used rather than accessing the wellSamples set directly.

J

javaType - Variable in class ome.util.PixelData
The pixels type as it would be represented in Java.
javaType() - Method in class ome.util.PixelData
Returns the Java type that has the same byte width of the pixel data.
Job - Class in ome.model.jobs
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Job() - Constructor for class ome.model.jobs.Job
 
Job(Long) - Constructor for class ome.model.jobs.Job
 
Job(Long, boolean) - Constructor for class ome.model.jobs.Job
Main constructor.
Job(String, String, String, String, JobStatus, Timestamp, Timestamp) - Constructor for class ome.model.jobs.Job
 
Job.Details - Class in ome.model.jobs
 
jobLinks - Variable in class ome.model.fs.Fileset
 
JOBLINKS - Static variable in class ome.model.fs.Fileset
 
JOBLINKSCOUNTPEROWNER - Static variable in class ome.model.fs.Fileset
 
JobOriginalFileLink - Class in ome.model.jobs
These filter definitions are used by the security system to eliminate non-readable objects from queries.
JobOriginalFileLink() - Constructor for class ome.model.jobs.JobOriginalFileLink
 
JobOriginalFileLink(Long) - Constructor for class ome.model.jobs.JobOriginalFileLink
 
JobOriginalFileLink(Long, boolean) - Constructor for class ome.model.jobs.JobOriginalFileLink
Main constructor.
JobOriginalFileLink(IObject, IObject) - Constructor for class ome.model.jobs.JobOriginalFileLink
 
JobOriginalFileLink.Details - Class in ome.model.jobs
 
JobStatus - Class in ome.model.jobs
 
JobStatus() - Constructor for class ome.model.jobs.JobStatus
 
JobStatus(Long) - Constructor for class ome.model.jobs.JobStatus
 
JobStatus(Long, boolean) - Constructor for class ome.model.jobs.JobStatus
Main constructor.
JobStatus(String) - Constructor for class ome.model.jobs.JobStatus
 
JobStatus.Details - Class in ome.model.jobs
 
JVST_IDENTIFIER - Static variable in class ome.util.Utils
 

K

keySet() - Method in class ome.parameters.Parameters
the Set of all names which would would return a non-null value from Parameters.get(String)
keywords - Variable in class ome.model.meta.Namespace
 
KEYWORDS - Static variable in class ome.model.meta.Namespace
 

L

Label - Class in ome.model.roi
 
Label() - Constructor for class ome.model.roi.Label
 
Label(Long) - Constructor for class ome.model.roi.Label
 
Label(Long, boolean) - Constructor for class ome.model.roi.Label
Main constructor.
Laser - Class in ome.model.acquisition
 
Laser() - Constructor for class ome.model.acquisition.Laser
 
Laser(Long) - Constructor for class ome.model.acquisition.Laser
 
Laser(Long, boolean) - Constructor for class ome.model.acquisition.Laser
Main constructor.
Laser(LaserType, LaserMedium) - Constructor for class ome.model.acquisition.Laser
 
laserMedium - Variable in class ome.model.acquisition.Laser
 
LASERMEDIUM - Static variable in class ome.model.acquisition.Laser
 
LaserMedium - Class in ome.model.enums
 
LaserMedium() - Constructor for class ome.model.enums.LaserMedium
 
LaserMedium(Long) - Constructor for class ome.model.enums.LaserMedium
 
LaserMedium(Long, boolean) - Constructor for class ome.model.enums.LaserMedium
Main constructor.
LaserMedium(String) - Constructor for class ome.model.enums.LaserMedium
 
LaserMedium.Details - Class in ome.model.enums
 
LaserType - Class in ome.model.enums
 
LaserType() - Constructor for class ome.model.enums.LaserType
 
LaserType(Long) - Constructor for class ome.model.enums.LaserType
 
LaserType(Long, boolean) - Constructor for class ome.model.enums.LaserType
Main constructor.
LaserType(String) - Constructor for class ome.model.enums.LaserType
 
LaserType.Details - Class in ome.model.enums
 
lastName - Variable in class ome.model.meta.Experimenter
 
LASTNAME - Static variable in class ome.model.meta.Experimenter
 
ldap - Variable in class ome.model.meta.Experimenter
 
LDAP - Static variable in class ome.model.meta.Experimenter
 
ldap - Variable in class ome.model.meta.ExperimenterGroup
 
LDAP - Static variable in class ome.model.meta.ExperimenterGroup
 
leaves - Variable in class ome.parameters.Options
 
leaves() - Method in class ome.parameters.Parameters
 
Length - Class in ome.model.units
class storing both a Length and a unit for that Length (e.g.
Length() - Constructor for class ome.model.units.Length
Deprecated.
Length(double, String) - Constructor for class ome.model.units.Length
 
Length(double, UnitsLength) - Constructor for class ome.model.units.Length
 
Length(double, Unit<Length>) - Constructor for class ome.model.units.Length
 
Length(Length) - Constructor for class ome.model.units.Length
 
lensNA - Variable in class ome.model.acquisition.Objective
 
LENSNA - Static variable in class ome.model.acquisition.Objective
 
LightEmittingDiode - Class in ome.model.acquisition
 
LightEmittingDiode() - Constructor for class ome.model.acquisition.LightEmittingDiode
 
LightEmittingDiode(Long) - Constructor for class ome.model.acquisition.LightEmittingDiode
 
LightEmittingDiode(Long, boolean) - Constructor for class ome.model.acquisition.LightEmittingDiode
Main constructor.
LightPath - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightPath() - Constructor for class ome.model.acquisition.LightPath
 
LightPath(Long) - Constructor for class ome.model.acquisition.LightPath
 
LightPath(Long, boolean) - Constructor for class ome.model.acquisition.LightPath
Main constructor.
lightPath - Variable in class ome.model.core.LogicalChannel
 
LIGHTPATH - Static variable in class ome.model.core.LogicalChannel
 
LightPath.Details - Class in ome.model.acquisition
 
LightPathAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightPathAnnotationLink() - Constructor for class ome.model.annotations.LightPathAnnotationLink
 
LightPathAnnotationLink(Long) - Constructor for class ome.model.annotations.LightPathAnnotationLink
 
LightPathAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.LightPathAnnotationLink
Main constructor.
LightPathAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.LightPathAnnotationLink
 
LightPathAnnotationLink.Details - Class in ome.model.annotations
 
LightPathEmissionFilterLink - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightPathEmissionFilterLink() - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink
 
LightPathEmissionFilterLink(Long) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink
 
LightPathEmissionFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink
Main constructor.
LightPathEmissionFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.LightPathEmissionFilterLink
 
LightPathEmissionFilterLink.Details - Class in ome.model.acquisition
 
LightPathExcitationFilterLink - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightPathExcitationFilterLink() - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink
 
LightPathExcitationFilterLink(Long) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink
 
LightPathExcitationFilterLink(Long, boolean) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink
Main constructor.
LightPathExcitationFilterLink(IObject, IObject) - Constructor for class ome.model.acquisition.LightPathExcitationFilterLink
 
LightPathExcitationFilterLink.Details - Class in ome.model.acquisition
 
LightSettings - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightSettings() - Constructor for class ome.model.acquisition.LightSettings
 
LightSettings(Long) - Constructor for class ome.model.acquisition.LightSettings
 
LightSettings(Long, boolean) - Constructor for class ome.model.acquisition.LightSettings
Main constructor.
LightSettings(LightSource) - Constructor for class ome.model.acquisition.LightSettings
 
LightSettings.Details - Class in ome.model.acquisition
 
lightSource - Variable in class ome.model.acquisition.Instrument
 
LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
 
lightSource - Variable in class ome.model.acquisition.LightSettings
 
LIGHTSOURCE - Static variable in class ome.model.acquisition.LightSettings
 
LightSource - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightSource() - Constructor for class ome.model.acquisition.LightSource
 
LightSource(Long) - Constructor for class ome.model.acquisition.LightSource
 
LightSource(Long, boolean) - Constructor for class ome.model.acquisition.LightSource
Main constructor.
LightSource(Instrument) - Constructor for class ome.model.acquisition.LightSource
 
LightSource.Details - Class in ome.model.acquisition
 
LightSourceAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
LightSourceAnnotationLink() - Constructor for class ome.model.annotations.LightSourceAnnotationLink
 
LightSourceAnnotationLink(Long) - Constructor for class ome.model.annotations.LightSourceAnnotationLink
 
LightSourceAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.LightSourceAnnotationLink
Main constructor.
LightSourceAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.LightSourceAnnotationLink
 
LightSourceAnnotationLink.Details - Class in ome.model.annotations
 
lightSourceSettings - Variable in class ome.model.core.LogicalChannel
 
LIGHTSOURCESETTINGS - Static variable in class ome.model.core.LogicalChannel
 
lightSourceSettings - Variable in class ome.model.experiment.MicrobeamManipulation
 
LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
 
limit - Variable in class ome.parameters.Filter
 
Line - Class in ome.model.roi
 
Line() - Constructor for class ome.model.roi.Line
 
Line(Long) - Constructor for class ome.model.roi.Line
 
Line(Long, boolean) - Constructor for class ome.model.roi.Line
Main constructor.
link(FilterSet, Filter) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
link(FilterSet, Filter) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
link(LightPath, Filter) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
link(LightPath, Filter) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
link(Annotation, Annotation) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
link(Channel, Annotation) - Method in class ome.model.annotations.ChannelAnnotationLink
 
link(Dataset, Annotation) - Method in class ome.model.annotations.DatasetAnnotationLink
 
link(Detector, Annotation) - Method in class ome.model.annotations.DetectorAnnotationLink
 
link(Dichroic, Annotation) - Method in class ome.model.annotations.DichroicAnnotationLink
 
link(Experimenter, Annotation) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
link(ExperimenterGroup, Annotation) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
link(Fileset, Annotation) - Method in class ome.model.annotations.FilesetAnnotationLink
 
link(Filter, Annotation) - Method in class ome.model.annotations.FilterAnnotationLink
 
link(Folder, Annotation) - Method in class ome.model.annotations.FolderAnnotationLink
 
link(Image, Annotation) - Method in class ome.model.annotations.ImageAnnotationLink
 
link(Instrument, Annotation) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
link(LightPath, Annotation) - Method in class ome.model.annotations.LightPathAnnotationLink
 
link(LightSource, Annotation) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
link(Namespace, Annotation) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
link(Node, Annotation) - Method in class ome.model.annotations.NodeAnnotationLink
 
link(Objective, Annotation) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
link(OriginalFile, Annotation) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
link(PlaneInfo, Annotation) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
link(PlateAcquisition, Annotation) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
link(Plate, Annotation) - Method in class ome.model.annotations.PlateAnnotationLink
 
link(Project, Annotation) - Method in class ome.model.annotations.ProjectAnnotationLink
 
link(Reagent, Annotation) - Method in class ome.model.annotations.ReagentAnnotationLink
 
link(Roi, Annotation) - Method in class ome.model.annotations.RoiAnnotationLink
 
link(Screen, Annotation) - Method in class ome.model.annotations.ScreenAnnotationLink
 
link(Session, Annotation) - Method in class ome.model.annotations.SessionAnnotationLink
 
link(Shape, Annotation) - Method in class ome.model.annotations.ShapeAnnotationLink
 
link(Well, Annotation) - Method in class ome.model.annotations.WellAnnotationLink
 
link(Dataset, Image) - Method in class ome.model.containers.DatasetImageLink
 
link(Folder, Image) - Method in class ome.model.containers.FolderImageLink
 
link(Folder, Roi) - Method in class ome.model.containers.FolderRoiLink
 
link(Project, Dataset) - Method in class ome.model.containers.ProjectDatasetLink
 
link(OriginalFile, Pixels) - Method in class ome.model.core.PixelsOriginalFileMap
 
link(Fileset, Job) - Method in class ome.model.fs.FilesetJobLink
 
Link - Class in ome.model.internal
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Link() - Constructor for class ome.model.internal.Link
 
Link(Long) - Constructor for class ome.model.internal.Link
 
Link(Long, boolean) - Constructor for class ome.model.internal.Link
Main constructor.
link(Job, OriginalFile) - Method in class ome.model.jobs.JobOriginalFileLink
 
link(ExperimenterGroup, Experimenter) - Method in class ome.model.meta.GroupExperimenterMap
 
link(Share, Experimenter) - Method in class ome.model.meta.ShareMember
 
link(Screen, Plate) - Method in class ome.model.screen.ScreenPlateLink
 
link(Well, Reagent) - Method in class ome.model.screen.WellReagentLink
 
Link.Details - Class in ome.model.internal
 
linkAnnotation(Annotation) - Method in class ome.model.acquisition.Detector
Adds a ome.model.annotations.DetectorAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.Dichroic
Adds a ome.model.annotations.DichroicAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.Filter
Adds a ome.model.annotations.FilterAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.Instrument
Adds a ome.model.annotations.InstrumentAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.LightPath
Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.LightSource
Adds a ome.model.annotations.LightSourceAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.acquisition.Objective
Adds a ome.model.annotations.ObjectiveAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.annotations.Annotation
Adds a ome.model.annotations.AnnotationAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.containers.Dataset
Adds a ome.model.annotations.DatasetAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.containers.Folder
Adds a ome.model.annotations.FolderAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.containers.Project
Adds a ome.model.annotations.ProjectAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.core.Channel
Adds a ome.model.annotations.ChannelAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.core.Image
Adds a ome.model.annotations.ImageAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.core.OriginalFile
Adds a ome.model.annotations.OriginalFileAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.core.PlaneInfo
Adds a ome.model.annotations.PlaneInfoAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.fs.Fileset
Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in interface ome.model.IAnnotated
 
linkAnnotation(Annotation) - Method in class ome.model.meta.Experimenter
Adds a ome.model.annotations.ExperimenterAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.meta.ExperimenterGroup
Adds a ome.model.annotations.ExperimenterGroupAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.meta.Namespace
Adds a ome.model.annotations.NamespaceAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.meta.Node
Adds a ome.model.annotations.NodeAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.meta.Session
Adds a ome.model.annotations.SessionAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.roi.Roi
Adds a ome.model.annotations.RoiAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.roi.Shape
Adds a ome.model.annotations.ShapeAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.screen.Plate
Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.screen.PlateAcquisition
Adds a ome.model.annotations.PlateAcquisitionAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.screen.Reagent
Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.screen.Screen
Adds a ome.model.annotations.ScreenAnnotationLink to annotationLinks .
linkAnnotation(Annotation) - Method in class ome.model.screen.Well
Adds a ome.model.annotations.WellAnnotationLink to annotationLinks .
linkDataset(Dataset) - Method in class ome.model.containers.Project
Adds a ome.model.containers.ProjectDatasetLink to datasetLinks .
linkDataset(Dataset) - Method in class ome.model.core.Image
Adds a ome.model.containers.DatasetImageLink to datasetLinks .
linkedAnnotationIterator() - Method in class ome.model.acquisition.Detector
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.Dichroic
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.Filter
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.Instrument
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.LightPath
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.LightSource
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.acquisition.Objective
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.annotations.Annotation
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.containers.Dataset
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.containers.Folder
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.containers.Project
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.core.Channel
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.core.Image
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.core.OriginalFile
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.core.PlaneInfo
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.fs.Fileset
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in interface ome.model.IAnnotated
 
linkedAnnotationIterator() - Method in class ome.model.meta.Experimenter
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.meta.ExperimenterGroup
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.meta.Namespace
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.meta.Node
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.meta.Session
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.roi.Roi
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.roi.Shape
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.screen.Plate
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.screen.PlateAcquisition
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.screen.Reagent
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.screen.Screen
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationIterator() - Method in class ome.model.screen.Well
provides an iterator over the parent values of the annotationLinks.
linkedAnnotationList() - Method in class ome.model.acquisition.Detector
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.Dichroic
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.Filter
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.Instrument
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.LightPath
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.LightSource
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.acquisition.Objective
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.annotations.Annotation
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.containers.Dataset
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.containers.Folder
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.containers.Project
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.core.Channel
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.core.Image
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.core.OriginalFile
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.core.PlaneInfo
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.fs.Fileset
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in interface ome.model.IAnnotated
 
linkedAnnotationList() - Method in class ome.model.meta.Experimenter
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.meta.ExperimenterGroup
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.meta.Namespace
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.meta.Node
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.meta.Session
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.roi.Roi
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.roi.Shape
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.screen.Plate
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.screen.PlateAcquisition
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.screen.Reagent
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.screen.Screen
produces a List-copy of the underlying collection.
linkedAnnotationList() - Method in class ome.model.screen.Well
produces a List-copy of the underlying collection.
linkedDatasetIterator() - Method in class ome.model.containers.Project
provides an iterator over the parent values of the datasetLinks.
linkedDatasetIterator() - Method in class ome.model.core.Image
provides an iterator over the child values of the datasetLinks.
linkedDatasetList() - Method in class ome.model.containers.Project
produces a List-copy of the underlying collection.
linkedDatasetList() - Method in class ome.model.core.Image
produces a List-copy of the underlying collection.
linkedEmissionFilterIterator() - Method in class ome.model.acquisition.Filter
provides an iterator over the child values of the emissionFilterLink.
linkedEmissionFilterIterator() - Method in class ome.model.acquisition.FilterSet
provides an iterator over the parent values of the emissionFilterLink.
linkedEmissionFilterIterator() - Method in class ome.model.acquisition.LightPath
provides an iterator over the parent values of the emissionFilterLink.
linkedEmissionFilterList() - Method in class ome.model.acquisition.Filter
produces a List-copy of the underlying collection.
linkedEmissionFilterList() - Method in class ome.model.acquisition.FilterSet
produces a List-copy of the underlying collection.
linkedEmissionFilterList() - Method in class ome.model.acquisition.LightPath
produces a List-copy of the underlying collection.
linkedExcitationFilterIterator() - Method in class ome.model.acquisition.Filter
provides an iterator over the child values of the excitationFilterLink.
linkedExcitationFilterIterator() - Method in class ome.model.acquisition.FilterSet
provides an iterator over the parent values of the excitationFilterLink.
linkedExcitationFilterIterator() - Method in class ome.model.acquisition.LightPath
provides an iterator over the parent values of the excitationFilterLink.
linkedExcitationFilterList() - Method in class ome.model.acquisition.Filter
produces a List-copy of the underlying collection.
linkedExcitationFilterList() - Method in class ome.model.acquisition.FilterSet
produces a List-copy of the underlying collection.
linkedExcitationFilterList() - Method in class ome.model.acquisition.LightPath
produces a List-copy of the underlying collection.
linkedExperimenterGroupIterator() - Method in class ome.model.meta.Experimenter
provides an iterator over the child values of the groupExperimenterMap.
linkedExperimenterGroupList() - Method in class ome.model.meta.Experimenter
produces a List-copy of the underlying collection.
linkedExperimenterIterator() - Method in class ome.model.meta.ExperimenterGroup
provides an iterator over the parent values of the groupExperimenterMap.
linkedExperimenterList() - Method in class ome.model.meta.ExperimenterGroup
produces a List-copy of the underlying collection.
linkedFolderIterator() - Method in class ome.model.core.Image
provides an iterator over the child values of the folderLinks.
linkedFolderIterator() - Method in class ome.model.roi.Roi
provides an iterator over the child values of the folderLinks.
linkedFolderList() - Method in class ome.model.core.Image
produces a List-copy of the underlying collection.
linkedFolderList() - Method in class ome.model.roi.Roi
produces a List-copy of the underlying collection.
linkedImageIterator() - Method in class ome.model.containers.Dataset
provides an iterator over the parent values of the imageLinks.
linkedImageIterator() - Method in class ome.model.containers.Folder
provides an iterator over the parent values of the imageLinks.
linkedImageList() - Method in class ome.model.containers.Dataset
produces a List-copy of the underlying collection.
linkedImageList() - Method in class ome.model.containers.Folder
produces a List-copy of the underlying collection.
linkedJobIterator() - Method in class ome.model.fs.Fileset
provides an iterator over the parent values of the jobLinks.
linkedJobList() - Method in class ome.model.fs.Fileset
produces a List-copy of the underlying collection.
linkedOriginalFileIterator() - Method in class ome.model.core.Pixels
provides an iterator over the child values of the pixelsFileMaps.
linkedOriginalFileIterator() - Method in class ome.model.jobs.Job
provides an iterator over the parent values of the originalFileLinks.
linkedOriginalFileList() - Method in class ome.model.core.Pixels
produces a List-copy of the underlying collection.
linkedOriginalFileList() - Method in class ome.model.jobs.Job
produces a List-copy of the underlying collection.
linkedPixelsIterator() - Method in class ome.model.core.OriginalFile
provides an iterator over the parent values of the pixelsFileMaps.
linkedPixelsList() - Method in class ome.model.core.OriginalFile
produces a List-copy of the underlying collection.
linkedPlateIterator() - Method in class ome.model.screen.Screen
provides an iterator over the parent values of the plateLinks.
linkedPlateList() - Method in class ome.model.screen.Screen
produces a List-copy of the underlying collection.
linkedProjectIterator() - Method in class ome.model.containers.Dataset
provides an iterator over the child values of the projectLinks.
linkedProjectList() - Method in class ome.model.containers.Dataset
produces a List-copy of the underlying collection.
linkedReagentIterator() - Method in class ome.model.screen.Well
provides an iterator over the parent values of the reagentLinks.
linkedReagentList() - Method in class ome.model.screen.Well
produces a List-copy of the underlying collection.
linkedRoiIterator() - Method in class ome.model.containers.Folder
provides an iterator over the parent values of the roiLinks.
linkedRoiList() - Method in class ome.model.containers.Folder
produces a List-copy of the underlying collection.
linkedScreenIterator() - Method in class ome.model.screen.Plate
provides an iterator over the child values of the screenLinks.
linkedScreenList() - Method in class ome.model.screen.Plate
produces a List-copy of the underlying collection.
linkedWellIterator() - Method in class ome.model.screen.Reagent
provides an iterator over the child values of the wellLinks.
linkedWellList() - Method in class ome.model.screen.Reagent
produces a List-copy of the underlying collection.
linkEmissionFilter(FilterSet) - Method in class ome.model.acquisition.Filter
Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink .
linkEmissionFilter(Filter) - Method in class ome.model.acquisition.FilterSet
Adds a ome.model.acquisition.FilterSetEmissionFilterLink to emissionFilterLink .
linkEmissionFilter(Filter) - Method in class ome.model.acquisition.LightPath
Adds a ome.model.acquisition.LightPathEmissionFilterLink to emissionFilterLink .
linkExcitationFilter(FilterSet) - Method in class ome.model.acquisition.Filter
Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink .
linkExcitationFilter(Filter) - Method in class ome.model.acquisition.FilterSet
Adds a ome.model.acquisition.FilterSetExcitationFilterLink to excitationFilterLink .
linkExcitationFilter(Filter) - Method in class ome.model.acquisition.LightPath
Adds a ome.model.acquisition.LightPathExcitationFilterLink to excitationFilterLink .
linkExperimenter(Experimenter) - Method in class ome.model.meta.ExperimenterGroup
Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap .
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.model.meta.Experimenter
Adds a ome.model.meta.GroupExperimenterMap to groupExperimenterMap .
linkFolder(Folder) - Method in class ome.model.core.Image
Adds a ome.model.containers.FolderImageLink to folderLinks .
linkFolder(Folder) - Method in class ome.model.roi.Roi
Adds a ome.model.containers.FolderRoiLink to folderLinks .
linkImage(Image) - Method in class ome.model.containers.Dataset
Adds a ome.model.containers.DatasetImageLink to imageLinks .
linkImage(Image) - Method in class ome.model.containers.Folder
Adds a ome.model.containers.FolderImageLink to imageLinks .
linkJob(Job) - Method in class ome.model.fs.Fileset
Adds a ome.model.fs.FilesetJobLink to jobLinks .
linkOriginalFile(OriginalFile) - Method in class ome.model.core.Pixels
Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps .
linkOriginalFile(OriginalFile) - Method in class ome.model.jobs.Job
Adds a ome.model.jobs.JobOriginalFileLink to originalFileLinks .
linkPixels(Pixels) - Method in class ome.model.core.OriginalFile
Adds a ome.model.core.PixelsOriginalFileMap to pixelsFileMaps .
linkPlate(Plate) - Method in class ome.model.screen.Screen
Adds a ome.model.screen.ScreenPlateLink to plateLinks .
linkProject(Project) - Method in class ome.model.containers.Dataset
Adds a ome.model.containers.ProjectDatasetLink to projectLinks .
linkReagent(Reagent) - Method in class ome.model.screen.Well
Adds a ome.model.screen.WellReagentLink to reagentLinks .
LINKRESTRICTION - Static variable in class ome.model.internal.Permissions
 
linkRoi(Roi) - Method in class ome.model.containers.Folder
Adds a ome.model.containers.FolderRoiLink to roiLinks .
linkScreen(Screen) - Method in class ome.model.screen.Plate
Adds a ome.model.screen.ScreenPlateLink to screenLinks .
linkWell(Well) - Method in class ome.model.screen.Reagent
Adds a ome.model.screen.WellReagentLink to wellLinks .
ListAnnotation - Class in ome.model.annotations
 
ListAnnotation() - Constructor for class ome.model.annotations.ListAnnotation
 
ListAnnotation(Long) - Constructor for class ome.model.annotations.ListAnnotation
 
ListAnnotation(Long, boolean) - Constructor for class ome.model.annotations.ListAnnotation
Main constructor.
listSqlTypes() - Static method in enum ome.model.units.UNITS
 
lock() - Static method in class ome.util.DetailsFieldBridge
 
locked - Variable in class ome.model.roi.Shape
 
LOCKED - Static variable in class ome.model.roi.Shape
 
LockTimeout - Exception in ome.conditions
Server could not acquire necessary lock.
LockTimeout(String, long, int) - Constructor for exception ome.conditions.LockTimeout
 
log - Static variable in class ome.util.ModelMapper
 
log - Variable in class ome.util.SqlAction.Impl
 
log - Static variable in class ome.util.Validation
 
log - Static variable in class ome.util.Validator
 
LoggingSqlAction() - Constructor for class ome.util.SqlAction.LoggingSqlAction
 
logicalChannel - Variable in class ome.model.core.Channel
 
LOGICALCHANNEL - Static variable in class ome.model.core.Channel
 
LogicalChannel - Class in ome.model.core
These filter definitions are used by the security system to eliminate non-readable objects from queries.
LogicalChannel() - Constructor for class ome.model.core.LogicalChannel
 
LogicalChannel(Long) - Constructor for class ome.model.core.LogicalChannel
 
LogicalChannel(Long, boolean) - Constructor for class ome.model.core.LogicalChannel
Main constructor.
LogicalChannel.Details - Class in ome.model.core
 
logs - Variable in class ome.model.meta.Event
 
LOGS - Static variable in class ome.model.meta.Event
 
LONG - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
LongAnnotation - Class in ome.model.annotations
 
LongAnnotation() - Constructor for class ome.model.annotations.LongAnnotation
 
LongAnnotation(Long) - Constructor for class ome.model.annotations.LongAnnotation
 
LongAnnotation(Long, boolean) - Constructor for class ome.model.annotations.LongAnnotation
Main constructor.
longValue - Variable in class ome.model.annotations.LongAnnotation
 
LONGVALUE - Static variable in class ome.model.annotations.LongAnnotation
 
lookupTable - Variable in class ome.model.core.Channel
 
LOOKUPTABLE - Static variable in class ome.model.core.Channel
 
lookupTable - Variable in class ome.model.display.ChannelBinding
 
LOOKUPTABLE - Static variable in class ome.model.display.ChannelBinding
 
lotNumber - Variable in class ome.model.acquisition.Detector
 
LOTNUMBER - Static variable in class ome.model.acquisition.Detector
 
lotNumber - Variable in class ome.model.acquisition.Dichroic
 
LOTNUMBER - Static variable in class ome.model.acquisition.Dichroic
 
lotNumber - Variable in class ome.model.acquisition.Filter
 
LOTNUMBER - Static variable in class ome.model.acquisition.Filter
 
lotNumber - Variable in class ome.model.acquisition.FilterSet
 
LOTNUMBER - Static variable in class ome.model.acquisition.FilterSet
 
lotNumber - Variable in class ome.model.acquisition.LightSource
 
LOTNUMBER - Static variable in class ome.model.acquisition.LightSource
 
lotNumber - Variable in class ome.model.acquisition.Microscope
 
LOTNUMBER - Static variable in class ome.model.acquisition.Microscope
 
lotNumber - Variable in class ome.model.acquisition.Objective
 
LOTNUMBER - Static variable in class ome.model.acquisition.Objective
 
lowerLimit - Variable in class ome.model.display.PlaneSlicingContext
 
LOWERLIMIT - Static variable in class ome.model.display.PlaneSlicingContext
 
lsid - Variable in class ome.model.meta.ExternalInfo
 
LSID - Static variable in class ome.model.meta.ExternalInfo
 
LSID - Class in ome.util
This class represents an LSID as used by the OME-XML data model.
LSID(Class, int...) - Constructor for class ome.util.LSID
Default constructor.
LSID(String) - Constructor for class ome.util.LSID
Constructor for non-standard LSIDs.
LSID(String, boolean) - Constructor for class ome.util.LSID
Constructor for standard LSIDs that should be parsed.

M

makeElectricPotentialUnitXML(String) - Static method in class ome.model.units.ElectricPotential
 
makeElectricPotentialXML(double, String) - Static method in class ome.model.units.ElectricPotential
 
makeFrequencyUnitXML(String) - Static method in class ome.model.units.Frequency
 
makeFrequencyXML(double, String) - Static method in class ome.model.units.Frequency
 
makeLengthUnitXML(String) - Static method in class ome.model.units.Length
 
makeLengthXML(double, String) - Static method in class ome.model.units.Length
 
makePowerUnitXML(String) - Static method in class ome.model.units.Power
 
makePowerXML(double, String) - Static method in class ome.model.units.Power
 
makePressureUnitXML(String) - Static method in class ome.model.units.Pressure
 
makePressureXML(double, String) - Static method in class ome.model.units.Pressure
 
makeTemperatureUnitXML(String) - Static method in class ome.model.units.Temperature
 
makeTemperatureXML(double, String) - Static method in class ome.model.units.Temperature
 
makeTimeUnitXML(String) - Static method in class ome.model.units.Time
 
makeTimeXML(double, String) - Static method in class ome.model.units.Time
 
manufacturer - Variable in class ome.model.acquisition.Detector
 
MANUFACTURER - Static variable in class ome.model.acquisition.Detector
 
manufacturer - Variable in class ome.model.acquisition.Dichroic
 
MANUFACTURER - Static variable in class ome.model.acquisition.Dichroic
 
manufacturer - Variable in class ome.model.acquisition.Filter
 
MANUFACTURER - Static variable in class ome.model.acquisition.Filter
 
manufacturer - Variable in class ome.model.acquisition.FilterSet
 
MANUFACTURER - Static variable in class ome.model.acquisition.FilterSet
 
manufacturer - Variable in class ome.model.acquisition.LightSource
 
MANUFACTURER - Static variable in class ome.model.acquisition.LightSource
 
manufacturer - Variable in class ome.model.acquisition.Microscope
 
MANUFACTURER - Static variable in class ome.model.acquisition.Microscope
 
manufacturer - Variable in class ome.model.acquisition.Objective
 
MANUFACTURER - Static variable in class ome.model.acquisition.Objective
 
map - Variable in class ome.model.acquisition.GenericExcitationSource
 
MAP - Static variable in class ome.model.acquisition.GenericExcitationSource
 
map - Variable in class ome.model.acquisition.ImagingEnvironment
 
MAP - Static variable in class ome.model.acquisition.ImagingEnvironment
 
map(Filterable) - Method in class ome.util.ModelMapper
 
map(Collection) - Method in class ome.util.ModelMapper
 
map(Map) - Method in class ome.util.ModelMapper
 
MapAnnotation - Class in ome.model.annotations
 
MapAnnotation() - Constructor for class ome.model.annotations.MapAnnotation
 
MapAnnotation(Long) - Constructor for class ome.model.annotations.MapAnnotation
 
MapAnnotation(Long, boolean) - Constructor for class ome.model.annotations.MapAnnotation
Main constructor.
MapPut - Class in ome.util
Simple bean which calls "map.put(key, object)" on InitializingBean.afterPropertiesSet().
MapPut() - Constructor for class ome.util.MapPut
 
mapRow(ResultSet, int) - Method in class ome.util.SqlAction.DeleteLog
 
mapRow(ResultSet, int) - Method in class ome.util.SqlAction.IdRowMapper
 
mapRow(ResultSet, int) - Method in class ome.util.SqlAction.StringRowMapper
 
mapValue - Variable in class ome.model.annotations.MapAnnotation
 
MAPVALUE - Static variable in class ome.model.annotations.MapAnnotation
 
markerEnd - Variable in class ome.model.roi.Line
 
MARKEREND - Static variable in class ome.model.roi.Line
 
markerEnd - Variable in class ome.model.roi.Polyline
 
MARKEREND - Static variable in class ome.model.roi.Polyline
 
markerStart - Variable in class ome.model.roi.Line
 
MARKERSTART - Static variable in class ome.model.roi.Line
 
markerStart - Variable in class ome.model.roi.Polyline
 
MARKERSTART - Static variable in class ome.model.roi.Polyline
 
Mask - Class in ome.model.roi
 
Mask() - Constructor for class ome.model.roi.Mask
 
Mask(Long) - Constructor for class ome.model.roi.Mask
 
Mask(Long, boolean) - Constructor for class ome.model.roi.Mask
Main constructor.
MAX_IN_SIZE - Static variable in class ome.util.SqlAction.Impl
 
maximum - Variable in class ome.util.PixelData
The maximum pixel value for the pixels type of the pixel data.
maximumFieldCount - Variable in class ome.model.screen.PlateAcquisition
 
MAXIMUMFIELDCOUNT - Static variable in class ome.model.screen.PlateAcquisition
 
medium - Variable in class ome.model.acquisition.ObjectiveSettings
 
MEDIUM - Static variable in class ome.model.acquisition.ObjectiveSettings
 
Medium - Class in ome.model.enums
 
Medium() - Constructor for class ome.model.enums.Medium
 
Medium(Long) - Constructor for class ome.model.enums.Medium
 
Medium(Long, boolean) - Constructor for class ome.model.enums.Medium
Main constructor.
Medium(String) - Constructor for class ome.model.enums.Medium
 
Medium.Details - Class in ome.model.enums
 
message - Variable in class ome.model.jobs.Job
 
MESSAGE - Static variable in class ome.model.jobs.Job
 
message - Variable in class ome.model.meta.DBPatch
 
MESSAGE - Static variable in class ome.model.meta.DBPatch
 
message - Variable in class ome.model.meta.Session
 
MESSAGE - Static variable in class ome.model.meta.Session
 
MetadataImportJob - Class in ome.model.jobs
 
MetadataImportJob() - Constructor for class ome.model.jobs.MetadataImportJob
 
MetadataImportJob(Long) - Constructor for class ome.model.jobs.MetadataImportJob
 
MetadataImportJob(Long, boolean) - Constructor for class ome.model.jobs.MetadataImportJob
Main constructor.
methodology - Variable in class ome.model.core.Pixels
 
METHODOLOGY - Static variable in class ome.model.core.Pixels
 
microbeamManipulation - Variable in class ome.model.acquisition.LightSettings
 
MICROBEAMMANIPULATION - Static variable in class ome.model.acquisition.LightSettings
 
microbeamManipulation - Variable in class ome.model.experiment.Experiment
 
MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
 
MicrobeamManipulation - Class in ome.model.experiment
These filter definitions are used by the security system to eliminate non-readable objects from queries.
MicrobeamManipulation() - Constructor for class ome.model.experiment.MicrobeamManipulation
 
MicrobeamManipulation(Long) - Constructor for class ome.model.experiment.MicrobeamManipulation
 
MicrobeamManipulation(Long, boolean) - Constructor for class ome.model.experiment.MicrobeamManipulation
Main constructor.
MicrobeamManipulation(MicrobeamManipulationType, Experiment) - Constructor for class ome.model.experiment.MicrobeamManipulation
 
MicrobeamManipulation.Details - Class in ome.model.experiment
 
MicrobeamManipulationType - Class in ome.model.enums
 
MicrobeamManipulationType() - Constructor for class ome.model.enums.MicrobeamManipulationType
 
MicrobeamManipulationType(Long) - Constructor for class ome.model.enums.MicrobeamManipulationType
 
MicrobeamManipulationType(Long, boolean) - Constructor for class ome.model.enums.MicrobeamManipulationType
Main constructor.
MicrobeamManipulationType(String) - Constructor for class ome.model.enums.MicrobeamManipulationType
 
MicrobeamManipulationType.Details - Class in ome.model.enums
 
microscope - Variable in class ome.model.acquisition.Instrument
 
MICROSCOPE - Static variable in class ome.model.acquisition.Instrument
 
Microscope - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Microscope() - Constructor for class ome.model.acquisition.Microscope
 
Microscope(Long) - Constructor for class ome.model.acquisition.Microscope
 
Microscope(Long, boolean) - Constructor for class ome.model.acquisition.Microscope
Main constructor.
Microscope(MicroscopeType) - Constructor for class ome.model.acquisition.Microscope
 
Microscope.Details - Class in ome.model.acquisition
 
MicroscopeType - Class in ome.model.enums
 
MicroscopeType() - Constructor for class ome.model.enums.MicroscopeType
 
MicroscopeType(Long) - Constructor for class ome.model.enums.MicroscopeType
 
MicroscopeType(Long, boolean) - Constructor for class ome.model.enums.MicroscopeType
Main constructor.
MicroscopeType(String) - Constructor for class ome.model.enums.MicroscopeType
 
MicroscopeType.Details - Class in ome.model.enums
 
middleName - Variable in class ome.model.meta.Experimenter
 
MIDDLENAME - Static variable in class ome.model.meta.Experimenter
 
mimetype - Variable in class ome.model.core.OriginalFile
 
MIMETYPE - Static variable in class ome.model.core.OriginalFile
 
mimeType - Variable in class ome.model.display.Thumbnail
 
MIMETYPE - Static variable in class ome.model.display.Thumbnail
 
minimum - Variable in class ome.util.PixelData
The minimum pixel value for the pixels type of the pixel data.
MissingPyramidException - Exception in ome.conditions
 
MissingPyramidException(String, long, long) - Constructor for exception ome.conditions.MissingPyramidException
 
mode - Variable in class ome.model.core.LogicalChannel
 
MODE - Static variable in class ome.model.core.LogicalChannel
 
model - Variable in class ome.model.acquisition.Detector
 
MODEL - Static variable in class ome.model.acquisition.Detector
 
model - Variable in class ome.model.acquisition.Dichroic
 
MODEL - Static variable in class ome.model.acquisition.Dichroic
 
model - Variable in class ome.model.acquisition.Filter
 
MODEL - Static variable in class ome.model.acquisition.Filter
 
model - Variable in class ome.model.acquisition.FilterSet
 
MODEL - Static variable in class ome.model.acquisition.FilterSet
 
model - Variable in class ome.model.acquisition.LightSource
 
MODEL - Static variable in class ome.model.acquisition.LightSource
 
model - Variable in class ome.model.acquisition.Microscope
 
MODEL - Static variable in class ome.model.acquisition.Microscope
 
model - Variable in class ome.model.acquisition.Objective
 
MODEL - Static variable in class ome.model.acquisition.Objective
 
model - Variable in class ome.model.display.RenderingDef
 
MODEL - Static variable in class ome.model.display.RenderingDef
 
model2target - Variable in class ome.util.ModelMapper
 
ModelBased - Interface in ome.model
used for reverse mapping.
ModelMapper - Class in ome.util
 
ModelMapper() - Constructor for class ome.util.ModelMapper
 
mtime - Variable in class ome.model.core.OriginalFile
 
MTIME - Static variable in class ome.model.core.OriginalFile
 
Mul(Conversion...) - Static method in class ome.model.units.Conversion
Static helper for creating Conversion.Mul instances.
Mul(Conversion[]) - Constructor for class ome.model.units.Conversion.Mul
 
multivalued - Variable in class ome.model.meta.Namespace
 
MULTIVALUED - Static variable in class ome.model.meta.Namespace
 

N

name - Variable in class ome.model.acquisition.StageLabel
 
NAME - Static variable in class ome.model.acquisition.StageLabel
 
name - Variable in class ome.model.annotations.Annotation
 
NAME - Static variable in class ome.model.annotations.Annotation
 
name - Variable in class ome.model.containers.Dataset
 
NAME - Static variable in class ome.model.containers.Dataset
 
name - Variable in class ome.model.containers.Folder
 
NAME - Static variable in class ome.model.containers.Folder
 
name - Variable in class ome.model.containers.Project
 
NAME - Static variable in class ome.model.containers.Project
 
name - Variable in class ome.model.core.Image
 
NAME - Static variable in class ome.model.core.Image
 
name - Variable in class ome.model.core.LogicalChannel
 
NAME - Static variable in class ome.model.core.LogicalChannel
 
name - Variable in class ome.model.core.OriginalFile
 
NAME - Static variable in class ome.model.core.OriginalFile
 
name - Variable in class ome.model.display.RenderingDef
 
NAME - Static variable in class ome.model.display.RenderingDef
 
name - Variable in class ome.model.meta.ExperimenterGroup
 
NAME - Static variable in class ome.model.meta.ExperimenterGroup
 
name - Variable in class ome.model.meta.Namespace
 
NAME - Static variable in class ome.model.meta.Namespace
 
name - Variable in class ome.model.roi.Roi
 
NAME - Static variable in class ome.model.roi.Roi
 
name - Variable in class ome.model.screen.Plate
 
NAME - Static variable in class ome.model.screen.Plate
 
name - Variable in class ome.model.screen.PlateAcquisition
 
NAME - Static variable in class ome.model.screen.PlateAcquisition
 
name - Variable in class ome.model.screen.Reagent
 
NAME - Static variable in class ome.model.screen.Reagent
 
name - Variable in class ome.model.screen.Screen
 
NAME - Static variable in class ome.model.screen.Screen
 
name - Variable in class ome.parameters.QueryParameter
 
name - Variable in class ome.util.SqlAction.DeleteLog
 
NamedValue - Class in ome.model.internal
class to store a single value in an ordered list.
NamedValue() - Constructor for class ome.model.internal.NamedValue
Deprecated.
NamedValue(String, String) - Constructor for class ome.model.internal.NamedValue
 
Namespace - Class in ome.model.meta
 
Namespace() - Constructor for class ome.model.meta.Namespace
 
Namespace(Long) - Constructor for class ome.model.meta.Namespace
 
Namespace(Long, boolean) - Constructor for class ome.model.meta.Namespace
Main constructor.
Namespace(String) - Constructor for class ome.model.meta.Namespace
 
Namespace.Details - Class in ome.model.meta
 
NamespaceAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
NamespaceAnnotationLink() - Constructor for class ome.model.annotations.NamespaceAnnotationLink
 
NamespaceAnnotationLink(Long) - Constructor for class ome.model.annotations.NamespaceAnnotationLink
 
NamespaceAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.NamespaceAnnotationLink
Main constructor.
NamespaceAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.NamespaceAnnotationLink
 
NamespaceAnnotationLink.Details - Class in ome.model.annotations
 
ndFilter - Variable in class ome.model.core.LogicalChannel
 
NDFILTER - Static variable in class ome.model.core.LogicalChannel
 
newInstance() - Method in class ome.model.acquisition.Arc
 
newInstance() - Method in class ome.model.acquisition.Detector.Details
 
newInstance() - Method in class ome.model.acquisition.Detector
 
newInstance() - Method in class ome.model.acquisition.DetectorSettings.Details
 
newInstance() - Method in class ome.model.acquisition.DetectorSettings
 
newInstance() - Method in class ome.model.acquisition.Dichroic.Details
 
newInstance() - Method in class ome.model.acquisition.Dichroic
 
newInstance() - Method in class ome.model.acquisition.Filament
 
newInstance() - Method in class ome.model.acquisition.Filter.Details
 
newInstance() - Method in class ome.model.acquisition.Filter
 
newInstance() - Method in class ome.model.acquisition.FilterSet.Details
 
newInstance() - Method in class ome.model.acquisition.FilterSet
 
newInstance() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink.Details
 
newInstance() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
newInstance() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink.Details
 
newInstance() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
newInstance() - Method in class ome.model.acquisition.GenericExcitationSource
 
newInstance() - Method in class ome.model.acquisition.ImagingEnvironment.Details
 
newInstance() - Method in class ome.model.acquisition.ImagingEnvironment
 
newInstance() - Method in class ome.model.acquisition.Instrument.Details
 
newInstance() - Method in class ome.model.acquisition.Instrument
 
newInstance() - Method in class ome.model.acquisition.Laser
 
newInstance() - Method in class ome.model.acquisition.LightEmittingDiode
 
newInstance() - Method in class ome.model.acquisition.LightPath.Details
 
newInstance() - Method in class ome.model.acquisition.LightPath
 
newInstance() - Method in class ome.model.acquisition.LightPathEmissionFilterLink.Details
 
newInstance() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
newInstance() - Method in class ome.model.acquisition.LightPathExcitationFilterLink.Details
 
newInstance() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
newInstance() - Method in class ome.model.acquisition.LightSettings.Details
 
newInstance() - Method in class ome.model.acquisition.LightSettings
 
newInstance() - Method in class ome.model.acquisition.LightSource.Details
 
newInstance() - Method in class ome.model.acquisition.Microscope.Details
 
newInstance() - Method in class ome.model.acquisition.Microscope
 
newInstance() - Method in class ome.model.acquisition.Objective.Details
 
newInstance() - Method in class ome.model.acquisition.Objective
 
newInstance() - Method in class ome.model.acquisition.ObjectiveSettings.Details
 
newInstance() - Method in class ome.model.acquisition.ObjectiveSettings
 
newInstance() - Method in class ome.model.acquisition.OTF.Details
 
newInstance() - Method in class ome.model.acquisition.OTF
 
newInstance() - Method in class ome.model.acquisition.StageLabel.Details
 
newInstance() - Method in class ome.model.acquisition.StageLabel
 
newInstance() - Method in class ome.model.acquisition.TransmittanceRange.Details
 
newInstance() - Method in class ome.model.acquisition.TransmittanceRange
 
newInstance() - Method in class ome.model.annotations.Annotation.Details
 
newInstance() - Method in class ome.model.annotations.AnnotationAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
newInstance() - Method in class ome.model.annotations.BooleanAnnotation
 
newInstance() - Method in class ome.model.annotations.ChannelAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.ChannelAnnotationLink
 
newInstance() - Method in class ome.model.annotations.CommentAnnotation
 
newInstance() - Method in class ome.model.annotations.DatasetAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.DatasetAnnotationLink
 
newInstance() - Method in class ome.model.annotations.DetectorAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.DetectorAnnotationLink
 
newInstance() - Method in class ome.model.annotations.DichroicAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.DichroicAnnotationLink
 
newInstance() - Method in class ome.model.annotations.DoubleAnnotation
 
newInstance() - Method in class ome.model.annotations.ExperimenterAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
newInstance() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
newInstance() - Method in class ome.model.annotations.FileAnnotation
 
newInstance() - Method in class ome.model.annotations.FilesetAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.FilesetAnnotationLink
 
newInstance() - Method in class ome.model.annotations.FilterAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.FilterAnnotationLink
 
newInstance() - Method in class ome.model.annotations.FolderAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.FolderAnnotationLink
 
newInstance() - Method in class ome.model.annotations.ImageAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.ImageAnnotationLink
 
newInstance() - Method in class ome.model.annotations.InstrumentAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
newInstance() - Method in class ome.model.annotations.LightPathAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.LightPathAnnotationLink
 
newInstance() - Method in class ome.model.annotations.LightSourceAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
newInstance() - Method in class ome.model.annotations.ListAnnotation
 
newInstance() - Method in class ome.model.annotations.LongAnnotation
 
newInstance() - Method in class ome.model.annotations.MapAnnotation
 
newInstance() - Method in class ome.model.annotations.NamespaceAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
newInstance() - Method in class ome.model.annotations.NodeAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.NodeAnnotationLink
 
newInstance() - Method in class ome.model.annotations.ObjectiveAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
newInstance() - Method in class ome.model.annotations.OriginalFileAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
newInstance() - Method in class ome.model.annotations.PlaneInfoAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
newInstance() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
newInstance() - Method in class ome.model.annotations.PlateAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.PlateAnnotationLink
 
newInstance() - Method in class ome.model.annotations.ProjectAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.ProjectAnnotationLink
 
newInstance() - Method in class ome.model.annotations.ReagentAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.ReagentAnnotationLink
 
newInstance() - Method in class ome.model.annotations.RoiAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.RoiAnnotationLink
 
newInstance() - Method in class ome.model.annotations.ScreenAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.ScreenAnnotationLink
 
newInstance() - Method in class ome.model.annotations.SessionAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.SessionAnnotationLink
 
newInstance() - Method in class ome.model.annotations.ShapeAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.ShapeAnnotationLink
 
newInstance() - Method in class ome.model.annotations.TagAnnotation
 
newInstance() - Method in class ome.model.annotations.TermAnnotation
 
newInstance() - Method in class ome.model.annotations.TimestampAnnotation
 
newInstance() - Method in class ome.model.annotations.WellAnnotationLink.Details
 
newInstance() - Method in class ome.model.annotations.WellAnnotationLink
 
newInstance() - Method in class ome.model.annotations.XmlAnnotation
 
newInstance() - Method in class ome.model.containers.Dataset.Details
 
newInstance() - Method in class ome.model.containers.Dataset
 
newInstance() - Method in class ome.model.containers.DatasetImageLink.Details
 
newInstance() - Method in class ome.model.containers.DatasetImageLink
 
newInstance() - Method in class ome.model.containers.Folder.Details
 
newInstance() - Method in class ome.model.containers.Folder
 
newInstance() - Method in class ome.model.containers.FolderImageLink.Details
 
newInstance() - Method in class ome.model.containers.FolderImageLink
 
newInstance() - Method in class ome.model.containers.FolderRoiLink.Details
 
newInstance() - Method in class ome.model.containers.FolderRoiLink
 
newInstance() - Method in class ome.model.containers.Project.Details
 
newInstance() - Method in class ome.model.containers.Project
 
newInstance() - Method in class ome.model.containers.ProjectDatasetLink.Details
 
newInstance() - Method in class ome.model.containers.ProjectDatasetLink
 
newInstance() - Method in class ome.model.core.Channel.Details
 
newInstance() - Method in class ome.model.core.Channel
 
newInstance() - Method in class ome.model.core.Image.Details
 
newInstance() - Method in class ome.model.core.Image
 
newInstance() - Method in class ome.model.core.LogicalChannel.Details
 
newInstance() - Method in class ome.model.core.LogicalChannel
 
newInstance() - Method in class ome.model.core.OriginalFile.Details
 
newInstance() - Method in class ome.model.core.OriginalFile
 
newInstance() - Method in class ome.model.core.Pixels.Details
 
newInstance() - Method in class ome.model.core.Pixels
 
newInstance() - Method in class ome.model.core.PixelsOriginalFileMap.Details
 
newInstance() - Method in class ome.model.core.PixelsOriginalFileMap
 
newInstance() - Method in class ome.model.core.PlaneInfo.Details
 
newInstance() - Method in class ome.model.core.PlaneInfo
 
newInstance() - Method in class ome.model.display.ChannelBinding.Details
 
newInstance() - Method in class ome.model.display.ChannelBinding
 
newInstance() - Method in class ome.model.display.CodomainMapContext.Details
 
newInstance() - Method in class ome.model.display.ContrastStretchingContext
 
newInstance() - Method in class ome.model.display.PlaneSlicingContext
 
newInstance() - Method in class ome.model.display.ProjectionDef.Details
 
newInstance() - Method in class ome.model.display.ProjectionDef
 
newInstance() - Method in class ome.model.display.QuantumDef.Details
 
newInstance() - Method in class ome.model.display.QuantumDef
 
newInstance() - Method in class ome.model.display.RenderingDef.Details
 
newInstance() - Method in class ome.model.display.RenderingDef
 
newInstance() - Method in class ome.model.display.ReverseIntensityContext
 
newInstance() - Method in class ome.model.display.Thumbnail.Details
 
newInstance() - Method in class ome.model.display.Thumbnail
 
newInstance() - Method in class ome.model.enums.AcquisitionMode.Details
 
newInstance() - Method in class ome.model.enums.AcquisitionMode
 
newInstance() - Method in class ome.model.enums.AdminPrivilege.Details
 
newInstance() - Method in class ome.model.enums.AdminPrivilege
 
newInstance() - Method in class ome.model.enums.ArcType.Details
 
newInstance() - Method in class ome.model.enums.ArcType
 
newInstance() - Method in class ome.model.enums.Binning.Details
 
newInstance() - Method in class ome.model.enums.Binning
 
newInstance() - Method in class ome.model.enums.ChecksumAlgorithm.Details
 
newInstance() - Method in class ome.model.enums.ChecksumAlgorithm
 
newInstance() - Method in class ome.model.enums.ContrastMethod.Details
 
newInstance() - Method in class ome.model.enums.ContrastMethod
 
newInstance() - Method in class ome.model.enums.Correction.Details
 
newInstance() - Method in class ome.model.enums.Correction
 
newInstance() - Method in class ome.model.enums.DetectorType.Details
 
newInstance() - Method in class ome.model.enums.DetectorType
 
newInstance() - Method in class ome.model.enums.DimensionOrder.Details
 
newInstance() - Method in class ome.model.enums.DimensionOrder
 
newInstance() - Method in class ome.model.enums.EventType.Details
 
newInstance() - Method in class ome.model.enums.EventType
 
newInstance() - Method in class ome.model.enums.ExperimentType.Details
 
newInstance() - Method in class ome.model.enums.ExperimentType
 
newInstance() - Method in class ome.model.enums.Family.Details
 
newInstance() - Method in class ome.model.enums.Family
 
newInstance() - Method in class ome.model.enums.FilamentType.Details
 
newInstance() - Method in class ome.model.enums.FilamentType
 
newInstance() - Method in class ome.model.enums.FilterType.Details
 
newInstance() - Method in class ome.model.enums.FilterType
 
newInstance() - Method in class ome.model.enums.Format.Details
 
newInstance() - Method in class ome.model.enums.Format
 
newInstance() - Method in class ome.model.enums.Illumination.Details
 
newInstance() - Method in class ome.model.enums.Illumination
 
newInstance() - Method in class ome.model.enums.Immersion.Details
 
newInstance() - Method in class ome.model.enums.Immersion
 
newInstance() - Method in class ome.model.enums.LaserMedium.Details
 
newInstance() - Method in class ome.model.enums.LaserMedium
 
newInstance() - Method in class ome.model.enums.LaserType.Details
 
newInstance() - Method in class ome.model.enums.LaserType
 
newInstance() - Method in class ome.model.enums.Medium.Details
 
newInstance() - Method in class ome.model.enums.Medium
 
newInstance() - Method in class ome.model.enums.MicrobeamManipulationType.Details
 
newInstance() - Method in class ome.model.enums.MicrobeamManipulationType
 
newInstance() - Method in class ome.model.enums.MicroscopeType.Details
 
newInstance() - Method in class ome.model.enums.MicroscopeType
 
newInstance() - Method in class ome.model.enums.PhotometricInterpretation.Details
 
newInstance() - Method in class ome.model.enums.PhotometricInterpretation
 
newInstance() - Method in class ome.model.enums.PixelsType.Details
 
newInstance() - Method in class ome.model.enums.PixelsType
 
newInstance() - Method in class ome.model.enums.ProjectionAxis.Details
 
newInstance() - Method in class ome.model.enums.ProjectionAxis
 
newInstance() - Method in class ome.model.enums.ProjectionType.Details
 
newInstance() - Method in class ome.model.enums.ProjectionType
 
newInstance() - Method in class ome.model.enums.Pulse.Details
 
newInstance() - Method in class ome.model.enums.Pulse
 
newInstance() - Method in class ome.model.enums.RenderingModel.Details
 
newInstance() - Method in class ome.model.enums.RenderingModel
 
newInstance() - Method in class ome.model.experiment.Experiment.Details
 
newInstance() - Method in class ome.model.experiment.Experiment
 
newInstance() - Method in class ome.model.experiment.MicrobeamManipulation.Details
 
newInstance() - Method in class ome.model.experiment.MicrobeamManipulation
 
newInstance() - Method in class ome.model.fs.Fileset.Details
 
newInstance() - Method in class ome.model.fs.Fileset
 
newInstance() - Method in class ome.model.fs.FilesetEntry.Details
 
newInstance() - Method in class ome.model.fs.FilesetEntry
 
newInstance() - Method in class ome.model.fs.FilesetJobLink.Details
 
newInstance() - Method in class ome.model.fs.FilesetJobLink
 
newInstance() - Method in class ome.model.internal.Details
 
newInstance() - Method in class ome.model.internal.Link.Details
 
newInstance() - Method in class ome.model.internal.Link
 
newInstance() - Method in class ome.model.jobs.ImportJob
Deprecated.
 
newInstance() - Method in class ome.model.jobs.IndexingJob
 
newInstance() - Method in class ome.model.jobs.IntegrityCheckJob
 
newInstance() - Method in class ome.model.jobs.Job.Details
 
newInstance() - Method in class ome.model.jobs.JobOriginalFileLink.Details
 
newInstance() - Method in class ome.model.jobs.JobOriginalFileLink
 
newInstance() - Method in class ome.model.jobs.JobStatus.Details
 
newInstance() - Method in class ome.model.jobs.JobStatus
 
newInstance() - Method in class ome.model.jobs.MetadataImportJob
 
newInstance() - Method in class ome.model.jobs.ParseJob
 
newInstance() - Method in class ome.model.jobs.PixelDataJob
 
newInstance() - Method in class ome.model.jobs.ScriptJob
 
newInstance() - Method in class ome.model.jobs.ThumbnailGenerationJob
 
newInstance() - Method in class ome.model.jobs.UploadJob
 
newInstance() - Method in class ome.model.meta.DBPatch.Details
 
newInstance() - Method in class ome.model.meta.DBPatch
 
newInstance() - Method in class ome.model.meta.Event.Details
 
newInstance() - Method in class ome.model.meta.Event
 
newInstance() - Method in class ome.model.meta.EventLog.Details
 
newInstance() - Method in class ome.model.meta.EventLog
 
newInstance() - Method in class ome.model.meta.Experimenter.Details
 
newInstance() - Method in class ome.model.meta.Experimenter
 
newInstance() - Method in class ome.model.meta.ExperimenterGroup.Details
 
newInstance() - Method in class ome.model.meta.ExperimenterGroup
 
newInstance() - Method in class ome.model.meta.ExternalInfo.Details
 
newInstance() - Method in class ome.model.meta.ExternalInfo
 
newInstance() - Method in class ome.model.meta.GroupExperimenterMap.Details
 
newInstance() - Method in class ome.model.meta.GroupExperimenterMap
 
newInstance() - Method in class ome.model.meta.Namespace.Details
 
newInstance() - Method in class ome.model.meta.Namespace
 
newInstance() - Method in class ome.model.meta.Node.Details
 
newInstance() - Method in class ome.model.meta.Node
 
newInstance() - Method in class ome.model.meta.Session.Details
 
newInstance() - Method in class ome.model.meta.Session
 
newInstance() - Method in class ome.model.meta.Share
 
newInstance() - Method in class ome.model.meta.ShareMember.Details
 
newInstance() - Method in class ome.model.meta.ShareMember
 
newInstance() - Method in class ome.model.roi.AffineTransform.Details
 
newInstance() - Method in class ome.model.roi.AffineTransform
 
newInstance() - Method in class ome.model.roi.Ellipse
 
newInstance() - Method in class ome.model.roi.Label
 
newInstance() - Method in class ome.model.roi.Line
 
newInstance() - Method in class ome.model.roi.Mask
 
newInstance() - Method in class ome.model.roi.Path
Deprecated.
 
newInstance() - Method in class ome.model.roi.Point
 
newInstance() - Method in class ome.model.roi.Polygon
 
newInstance() - Method in class ome.model.roi.Polyline
 
newInstance() - Method in class ome.model.roi.Rectangle
 
newInstance() - Method in class ome.model.roi.Roi.Details
 
newInstance() - Method in class ome.model.roi.Roi
 
newInstance() - Method in class ome.model.roi.Shape.Details
 
newInstance() - Method in class ome.model.screen.Plate.Details
 
newInstance() - Method in class ome.model.screen.Plate
 
newInstance() - Method in class ome.model.screen.PlateAcquisition.Details
 
newInstance() - Method in class ome.model.screen.PlateAcquisition
 
newInstance() - Method in class ome.model.screen.Reagent.Details
 
newInstance() - Method in class ome.model.screen.Reagent
 
newInstance() - Method in class ome.model.screen.Screen.Details
 
newInstance() - Method in class ome.model.screen.Screen
 
newInstance() - Method in class ome.model.screen.ScreenPlateLink.Details
 
newInstance() - Method in class ome.model.screen.ScreenPlateLink
 
newInstance() - Method in class ome.model.screen.Well.Details
 
newInstance() - Method in class ome.model.screen.Well
 
newInstance() - Method in class ome.model.screen.WellReagentLink.Details
 
newInstance() - Method in class ome.model.screen.WellReagentLink
 
newInstance() - Method in class ome.model.screen.WellSample.Details
 
newInstance() - Method in class ome.model.screen.WellSample
 
newInstance() - Method in class ome.model.stats.StatsInfo.Details
 
newInstance() - Method in class ome.model.stats.StatsInfo
 
next() - Method in class ome.util.EmptyIterator
 
nextPixelsDataLogForRepo(String, long, int) - Method in class ome.util.SqlAction.Impl
 
nextPixelsDataLogForRepo(String, long, int) - Method in interface ome.util.SqlAction
Returns arrays of longs for the following SQL return values: experimenter, eventlog, entityid as pixels, rownumber The oldest N eventlogs with action = "PIXELDATA" and entitytype = "ome.model.core.Pixels" is found per user and returned.
nextSessionId() - Method in class ome.util.actions.PostgresSqlAction
 
nextSessionId() - Method in interface ome.util.SqlAction
 
nextValue(String, int) - Method in class ome.util.actions.PostgresSqlAction
 
nextValue(String, int) - Method in interface ome.util.SqlAction
The implementation of this method guarantees that even if the current transaction fails that the value found will not be used by another transaction.
noCache() - Method in class ome.parameters.Parameters
Set queries to not be cacheable.
Node - Class in ome.model.meta
 
Node() - Constructor for class ome.model.meta.Node
 
Node(Long) - Constructor for class ome.model.meta.Node
 
Node(Long, boolean) - Constructor for class ome.model.meta.Node
Main constructor.
Node(String, String, Timestamp) - Constructor for class ome.model.meta.Node
 
node - Variable in class ome.model.meta.Session
 
NODE - Static variable in class ome.model.meta.Session
 
Node.Details - Class in ome.model.meta
 
NodeAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
NodeAnnotationLink() - Constructor for class ome.model.annotations.NodeAnnotationLink
 
NodeAnnotationLink(Long) - Constructor for class ome.model.annotations.NodeAnnotationLink
 
NodeAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.NodeAnnotationLink
Main constructor.
NodeAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.NodeAnnotationLink
 
NodeAnnotationLink.Details - Class in ome.model.annotations
 
nodeId(String) - Method in class ome.util.actions.PostgresSqlAction
 
nodeId(String) - Method in interface ome.util.SqlAction
 
noiseReduction - Variable in class ome.model.display.ChannelBinding
 
NOISEREDUCTION - Static variable in class ome.model.display.ChannelBinding
 
noLeaves() - Method in class ome.parameters.Parameters
 
nominalMagnification - Variable in class ome.model.acquisition.Objective
 
NOMINALMAGNIFICATION - Static variable in class ome.model.acquisition.Objective
 
noOrphan() - Method in class ome.parameters.Parameters
 
now() - Method in class ome.util.actions.PostgresSqlAction
 
now() - Method in interface ome.util.SqlAction
 
ns - Variable in class ome.model.annotations.Annotation
 
NS - Static variable in class ome.model.annotations.Annotation
 
nullSafeDouble(Double) - Method in class ome.util.ModelMapper
 
nullSafeFloat(Float) - Method in class ome.util.ModelMapper
 
nullSafeGet(ResultSet, String[], Object) - Method in class ome.model.units.GenericEnumType
 
nullSafeInt(Integer) - Method in class ome.util.ModelMapper
 
nullSafeLong(Long) - Method in class ome.util.ModelMapper
 
nullSafeSet(PreparedStatement, Object, int) - Method in class ome.model.units.GenericEnumType
 
NumericAnnotation - Class in ome.model.annotations
 
NumericAnnotation() - Constructor for class ome.model.annotations.NumericAnnotation
 
NumericAnnotation(Long) - Constructor for class ome.model.annotations.NumericAnnotation
 
NumericAnnotation(Long, boolean) - Constructor for class ome.model.annotations.NumericAnnotation
Main constructor.

O

objective - Variable in class ome.model.acquisition.Instrument
 
OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
 
Objective - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Objective() - Constructor for class ome.model.acquisition.Objective
 
Objective(Long) - Constructor for class ome.model.acquisition.Objective
 
Objective(Long, boolean) - Constructor for class ome.model.acquisition.Objective
Main constructor.
Objective(Immersion, Correction, Instrument) - Constructor for class ome.model.acquisition.Objective
 
objective - Variable in class ome.model.acquisition.ObjectiveSettings
 
OBJECTIVE - Static variable in class ome.model.acquisition.ObjectiveSettings
 
objective - Variable in class ome.model.acquisition.OTF
 
OBJECTIVE - Static variable in class ome.model.acquisition.OTF
 
Objective.Details - Class in ome.model.acquisition
 
ObjectiveAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ObjectiveAnnotationLink() - Constructor for class ome.model.annotations.ObjectiveAnnotationLink
 
ObjectiveAnnotationLink(Long) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink
 
ObjectiveAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink
Main constructor.
ObjectiveAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ObjectiveAnnotationLink
 
ObjectiveAnnotationLink.Details - Class in ome.model.annotations
 
ObjectiveSettings - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ObjectiveSettings() - Constructor for class ome.model.acquisition.ObjectiveSettings
 
ObjectiveSettings(Long) - Constructor for class ome.model.acquisition.ObjectiveSettings
 
ObjectiveSettings(Long, boolean) - Constructor for class ome.model.acquisition.ObjectiveSettings
Main constructor.
ObjectiveSettings(Objective) - Constructor for class ome.model.acquisition.ObjectiveSettings
 
objectiveSettings - Variable in class ome.model.core.Image
 
OBJECTIVESETTINGS - Static variable in class ome.model.core.Image
 
ObjectiveSettings.Details - Class in ome.model.acquisition
 
offset - Variable in class ome.parameters.Filter
 
offsetValue - Variable in class ome.model.acquisition.Detector
 
OFFSETVALUE - Static variable in class ome.model.acquisition.Detector
 
offsetValue - Variable in class ome.model.acquisition.DetectorSettings
 
OFFSETVALUE - Static variable in class ome.model.acquisition.DetectorSettings
 
ome.conditions - package ome.conditions
Forms the basis of all Omero exception hierarchies.
ome.conditions.acl - package ome.conditions.acl
Exceptions thrown due to access control violations.
ome.model - package ome.model
Central interfaces in the Omero object model.
ome.model.acquisition - package ome.model.acquisition
 
ome.model.annotations - package ome.model.annotations
 
ome.model.containers - package ome.model.containers
 
ome.model.core - package ome.model.core
 
ome.model.display - package ome.model.display
 
ome.model.enums - package ome.model.enums
 
ome.model.experiment - package ome.model.experiment
 
ome.model.fs - package ome.model.fs
 
ome.model.internal - package ome.model.internal
Contains non-code-generated model objects.
ome.model.jobs - package ome.model.jobs
 
ome.model.meta - package ome.model.meta
 
ome.model.roi - package ome.model.roi
 
ome.model.screen - package ome.model.screen
 
ome.model.stats - package ome.model.stats
 
ome.model.units - package ome.model.units
 
ome.parameters - package ome.parameters
Contains necessary parameters for various API methods throughout OMERO.
ome.services.fulltext - package ome.services.fulltext
 
ome.util - package ome.util
Utilities for all of OMERO.
ome.util.actions - package ome.util.actions
 
omeName - Variable in class ome.model.meta.Experimenter
 
OMENAME - Static variable in class ome.model.meta.Experimenter
 
opticalAxisAveraged - Variable in class ome.model.acquisition.OTF
 
OPTICALAXISAVERAGED - Static variable in class ome.model.acquisition.OTF
 
OptimisticLockException - Exception in ome.conditions
Signifies that another user has updated or deleted a given object, more specifically a query of the form : "<action> where id = ? and version = ?" applied to no rows.
OptimisticLockException(String) - Constructor for exception ome.conditions.OptimisticLockException
 
Options - Class in ome.parameters
Simple options container.
Options() - Constructor for class ome.parameters.Options
 
OriginalFile - Class in ome.model.core
These filter definitions are used by the security system to eliminate non-readable objects from queries.
OriginalFile() - Constructor for class ome.model.core.OriginalFile
 
OriginalFile(Long) - Constructor for class ome.model.core.OriginalFile
 
OriginalFile(Long, boolean) - Constructor for class ome.model.core.OriginalFile
Main constructor.
OriginalFile(String, String) - Constructor for class ome.model.core.OriginalFile
 
originalFile - Variable in class ome.model.fs.FilesetEntry
 
ORIGINALFILE - Static variable in class ome.model.fs.FilesetEntry
 
OriginalFile.Details - Class in ome.model.core
 
OriginalFileAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
OriginalFileAnnotationLink() - Constructor for class ome.model.annotations.OriginalFileAnnotationLink
 
OriginalFileAnnotationLink(Long) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink
 
OriginalFileAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink
Main constructor.
OriginalFileAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.OriginalFileAnnotationLink
 
OriginalFileAnnotationLink.Details - Class in ome.model.annotations
 
originalFileLinks - Variable in class ome.model.jobs.Job
 
ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
 
ORIGINALFILELINKSCOUNTPEROWNER - Static variable in class ome.model.jobs.Job
 
orphan - Variable in class ome.parameters.Options
 
orphan() - Method in class ome.parameters.Parameters
 
otf - Variable in class ome.model.acquisition.Instrument
 
OTF - Static variable in class ome.model.acquisition.Instrument
 
OTF - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
OTF() - Constructor for class ome.model.acquisition.OTF
 
OTF(Long) - Constructor for class ome.model.acquisition.OTF
 
OTF(Long, boolean) - Constructor for class ome.model.acquisition.OTF
Main constructor.
OTF(Integer, Integer, Boolean, PixelsType, String, Objective, Instrument) - Constructor for class ome.model.acquisition.OTF
 
otf - Variable in class ome.model.core.LogicalChannel
 
OTF - Static variable in class ome.model.core.LogicalChannel
 
OTF.Details - Class in ome.model.acquisition
 
OverUsageException - Exception in ome.conditions
More specific ApiUsageException, in that the current use of the OMERO API could overwhelm the server and has been blocked.
OverUsageException(String) - Constructor for exception ome.conditions.OverUsageException
 
OWNER - Static variable in class ome.model.internal.Details
 
owner - Variable in class ome.model.meta.GroupExperimenterMap
 
OWNER - Static variable in class ome.model.meta.GroupExperimenterMap
 
owner - Variable in class ome.model.meta.Session
 
OWNER - Static variable in class ome.model.meta.Session
 
owner(long) - Method in class ome.parameters.Filter
 
owner() - Method in class ome.parameters.Filter
 
owner() - Method in class ome.parameters.Parameters
 
OWNER_FILTER - Static variable in class ome.model.acquisition.Arc
 
OWNER_FILTER - Static variable in class ome.model.acquisition.Detector
 
OWNER_FILTER - Static variable in class ome.model.acquisition.DetectorSettings
 
OWNER_FILTER - Static variable in class ome.model.acquisition.Dichroic
 
OWNER_FILTER - Static variable in class ome.model.acquisition.Filament
 
OWNER_FILTER - Static variable in class ome.model.acquisition.Filter
 
OWNER_FILTER - Static variable in class ome.model.acquisition.FilterSet
 
OWNER_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
OWNER_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
OWNER_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource
 
OWNER_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment
 
OWNER_FILTER - Static variable in class ome.model.acquisition.Instrument
 
OWNER_FILTER - Static variable in class ome.model.acquisition.Laser
 
OWNER_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode
 
OWNER_FILTER - Static variable in class ome.model.acquisition.LightPath
 
OWNER_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
OWNER_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
OWNER_FILTER - Static variable in class ome.model.acquisition.LightSettings
 
OWNER_FILTER - Static variable in class ome.model.acquisition.LightSource
 
OWNER_FILTER - Static variable in class ome.model.acquisition.Microscope
 
OWNER_FILTER - Static variable in class ome.model.acquisition.Objective
 
OWNER_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings
 
OWNER_FILTER - Static variable in class ome.model.acquisition.OTF
 
OWNER_FILTER - Static variable in class ome.model.acquisition.StageLabel
 
OWNER_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange
 
OWNER_FILTER - Static variable in class ome.model.annotations.Annotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.BasicAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.CommentAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.FileAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.ListAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.LongAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.MapAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.NumericAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.TagAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.TermAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.TextAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.TypeAnnotation
 
OWNER_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink
 
OWNER_FILTER - Static variable in class ome.model.annotations.XmlAnnotation
 
OWNER_FILTER - Static variable in class ome.model.containers.Dataset
 
OWNER_FILTER - Static variable in class ome.model.containers.DatasetImageLink
 
OWNER_FILTER - Static variable in class ome.model.containers.Folder
 
OWNER_FILTER - Static variable in class ome.model.containers.FolderImageLink
 
OWNER_FILTER - Static variable in class ome.model.containers.FolderRoiLink
 
OWNER_FILTER - Static variable in class ome.model.containers.Project
 
OWNER_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink
 
OWNER_FILTER - Static variable in class ome.model.core.Channel
 
OWNER_FILTER - Static variable in class ome.model.core.Image
 
OWNER_FILTER - Static variable in class ome.model.core.LogicalChannel
 
OWNER_FILTER - Static variable in class ome.model.core.OriginalFile
 
OWNER_FILTER - Static variable in class ome.model.core.Pixels
 
OWNER_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap
 
OWNER_FILTER - Static variable in class ome.model.core.PlaneInfo
 
OWNER_FILTER - Static variable in class ome.model.display.ChannelBinding
 
OWNER_FILTER - Static variable in class ome.model.display.CodomainMapContext
 
OWNER_FILTER - Static variable in class ome.model.display.ContrastStretchingContext
 
OWNER_FILTER - Static variable in class ome.model.display.PlaneSlicingContext
 
OWNER_FILTER - Static variable in class ome.model.display.ProjectionDef
 
OWNER_FILTER - Static variable in class ome.model.display.QuantumDef
 
OWNER_FILTER - Static variable in class ome.model.display.RenderingDef
 
OWNER_FILTER - Static variable in class ome.model.display.ReverseIntensityContext
 
OWNER_FILTER - Static variable in class ome.model.display.Thumbnail
 
OWNER_FILTER - Static variable in class ome.model.experiment.Experiment
 
OWNER_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation
 
OWNER_FILTER - Static variable in class ome.model.fs.Fileset
 
OWNER_FILTER - Static variable in class ome.model.fs.FilesetEntry
 
OWNER_FILTER - Static variable in class ome.model.fs.FilesetJobLink
 
OWNER_FILTER - Static variable in class ome.model.internal.Link
 
OWNER_FILTER - Static variable in class ome.model.jobs.ImportJob
Deprecated.
 
OWNER_FILTER - Static variable in class ome.model.jobs.IndexingJob
 
OWNER_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob
 
OWNER_FILTER - Static variable in class ome.model.jobs.Job
 
OWNER_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink
 
OWNER_FILTER - Static variable in class ome.model.jobs.MetadataImportJob
 
OWNER_FILTER - Static variable in class ome.model.jobs.ParseJob
 
OWNER_FILTER - Static variable in class ome.model.jobs.PixelDataJob
 
OWNER_FILTER - Static variable in class ome.model.jobs.ScriptJob
 
OWNER_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob
 
OWNER_FILTER - Static variable in class ome.model.jobs.UploadJob
 
OWNER_FILTER - Static variable in class ome.model.meta.ExternalInfo
 
OWNER_FILTER - Static variable in class ome.model.roi.AffineTransform
 
OWNER_FILTER - Static variable in class ome.model.roi.Ellipse
 
OWNER_FILTER - Static variable in class ome.model.roi.Label
 
OWNER_FILTER - Static variable in class ome.model.roi.Line
 
OWNER_FILTER - Static variable in class ome.model.roi.Mask
 
OWNER_FILTER - Static variable in class ome.model.roi.Path
Deprecated.
 
OWNER_FILTER - Static variable in class ome.model.roi.Point
 
OWNER_FILTER - Static variable in class ome.model.roi.Polygon
 
OWNER_FILTER - Static variable in class ome.model.roi.Polyline
 
OWNER_FILTER - Static variable in class ome.model.roi.Rectangle
 
OWNER_FILTER - Static variable in class ome.model.roi.Roi
 
OWNER_FILTER - Static variable in class ome.model.roi.Shape
 
OWNER_FILTER - Static variable in class ome.model.screen.Plate
 
OWNER_FILTER - Static variable in class ome.model.screen.PlateAcquisition
 
OWNER_FILTER - Static variable in class ome.model.screen.Reagent
 
OWNER_FILTER - Static variable in class ome.model.screen.Screen
 
OWNER_FILTER - Static variable in class ome.model.screen.ScreenPlateLink
 
OWNER_FILTER - Static variable in class ome.model.screen.Well
 
OWNER_FILTER - Static variable in class ome.model.screen.WellReagentLink
 
OWNER_FILTER - Static variable in class ome.model.screen.WellSample
 
OWNER_FILTER - Static variable in class ome.model.stats.StatsInfo
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
 
OWNER_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
 
OWNER_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel
 
OWNER_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels
 
OWNER_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder
 
OWNER_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project
 
OWNER_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image
 
OWNER_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument
 
OWNER_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument
 
OWNER_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
OWNER_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
OWNER_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
OWNER_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
OWNER_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
OWNER_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
OWNER_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
 
OWNER_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument
 
OWNER_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument
 
OWNER_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image
 
OWNER_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi
 
OWNER_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset
 
OWNER_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder
 
OWNER_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset
 
OWNER_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset
 
OWNER_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
 
OWNER_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
 
OWNER_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
 
OWNER_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
 
OWNER_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
 
OWNER_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument
 
OWNER_FILTER_PIXELS - Static variable in class ome.model.core.Image
 
OWNER_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
 
OWNER_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
 
OWNER_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels
 
OWNER_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
 
OWNER_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen
 
OWNER_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef
 
OWNER_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset
 
OWNER_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well
 
OWNER_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen
 
OWNER_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder
 
OWNER_FILTER_ROIS - Static variable in class ome.model.core.Image
 
OWNER_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate
 
OWNER_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels
 
OWNER_FILTER_SHAPES - Static variable in class ome.model.roi.Roi
 
OWNER_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
 
OWNER_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels
 
OWNER_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset
 
OWNER_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef
 
OWNER_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent
 
OWNER_FILTER_WELLS - Static variable in class ome.model.screen.Plate
 
OWNER_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
 
OWNER_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image
 
OWNER_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well
 
OWNER_ID - Static variable in class ome.parameters.Parameters
named parameter "ownerId".
ownerId - Variable in class ome.util.SqlAction.DeleteLog
 

P

page(Integer, Integer) - Method in class ome.parameters.Filter
 
page(Integer, Integer) - Method in class ome.parameters.Parameters
 
paginate(Integer, Integer) - Method in class ome.parameters.Parameters
 
Parameters - Class in ome.parameters
container object for QueryParameter and Filter instances.
Parameters() - Constructor for class ome.parameters.Parameters
default constructor.
Parameters(Filter) - Constructor for class ome.parameters.Parameters
Filter constructor.
Parameters(Parameters) - Constructor for class ome.parameters.Parameters
copy constructor.
Parameters(QueryParameter[]) - Constructor for class ome.parameters.Parameters
copy constructor.
params - Variable in class ome.model.jobs.ParseJob
 
PARAMS - Static variable in class ome.model.jobs.ParseJob
 
parent - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
PARENT - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
parent() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
parent - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
PARENT - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
parent() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
parent - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
PARENT - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
parent() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
parent - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
PARENT - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
parent() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
parent - Variable in class ome.model.annotations.AnnotationAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
parent() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
parent - Variable in class ome.model.annotations.ChannelAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
parent() - Method in class ome.model.annotations.ChannelAnnotationLink
 
parent - Variable in class ome.model.annotations.DatasetAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
parent() - Method in class ome.model.annotations.DatasetAnnotationLink
 
parent - Variable in class ome.model.annotations.DetectorAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
parent() - Method in class ome.model.annotations.DetectorAnnotationLink
 
parent - Variable in class ome.model.annotations.DichroicAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
parent() - Method in class ome.model.annotations.DichroicAnnotationLink
 
parent - Variable in class ome.model.annotations.ExperimenterAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
parent() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
parent - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
parent() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
parent - Variable in class ome.model.annotations.FilesetAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
parent() - Method in class ome.model.annotations.FilesetAnnotationLink
 
parent - Variable in class ome.model.annotations.FilterAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.FilterAnnotationLink
 
parent() - Method in class ome.model.annotations.FilterAnnotationLink
 
parent - Variable in class ome.model.annotations.FolderAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.FolderAnnotationLink
 
parent() - Method in class ome.model.annotations.FolderAnnotationLink
 
parent - Variable in class ome.model.annotations.ImageAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.ImageAnnotationLink
 
parent() - Method in class ome.model.annotations.ImageAnnotationLink
 
parent - Variable in class ome.model.annotations.InstrumentAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
parent() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
parent - Variable in class ome.model.annotations.LightPathAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
parent() - Method in class ome.model.annotations.LightPathAnnotationLink
 
parent - Variable in class ome.model.annotations.LightSourceAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
parent() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
parent - Variable in class ome.model.annotations.NamespaceAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
parent() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
parent - Variable in class ome.model.annotations.NodeAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.NodeAnnotationLink
 
parent() - Method in class ome.model.annotations.NodeAnnotationLink
 
parent - Variable in class ome.model.annotations.ObjectiveAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
parent() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
parent - Variable in class ome.model.annotations.OriginalFileAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
parent() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
parent - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
parent() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
parent - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
parent() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
parent - Variable in class ome.model.annotations.PlateAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.PlateAnnotationLink
 
parent() - Method in class ome.model.annotations.PlateAnnotationLink
 
parent - Variable in class ome.model.annotations.ProjectAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
parent() - Method in class ome.model.annotations.ProjectAnnotationLink
 
parent - Variable in class ome.model.annotations.ReagentAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
parent() - Method in class ome.model.annotations.ReagentAnnotationLink
 
parent - Variable in class ome.model.annotations.RoiAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.RoiAnnotationLink
 
parent() - Method in class ome.model.annotations.RoiAnnotationLink
 
parent - Variable in class ome.model.annotations.ScreenAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
parent() - Method in class ome.model.annotations.ScreenAnnotationLink
 
parent - Variable in class ome.model.annotations.SessionAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.SessionAnnotationLink
 
parent() - Method in class ome.model.annotations.SessionAnnotationLink
 
parent - Variable in class ome.model.annotations.ShapeAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
parent() - Method in class ome.model.annotations.ShapeAnnotationLink
 
parent - Variable in class ome.model.annotations.WellAnnotationLink
 
PARENT - Static variable in class ome.model.annotations.WellAnnotationLink
 
parent() - Method in class ome.model.annotations.WellAnnotationLink
 
parent - Variable in class ome.model.containers.DatasetImageLink
 
PARENT - Static variable in class ome.model.containers.DatasetImageLink
 
parent() - Method in class ome.model.containers.DatasetImageLink
 
parent - Variable in class ome.model.containers.FolderImageLink
 
PARENT - Static variable in class ome.model.containers.FolderImageLink
 
parent() - Method in class ome.model.containers.FolderImageLink
 
parent - Variable in class ome.model.containers.FolderRoiLink
 
PARENT - Static variable in class ome.model.containers.FolderRoiLink
 
parent() - Method in class ome.model.containers.FolderRoiLink
 
parent - Variable in class ome.model.containers.ProjectDatasetLink
 
PARENT - Static variable in class ome.model.containers.ProjectDatasetLink
 
parent() - Method in class ome.model.containers.ProjectDatasetLink
 
parent - Variable in class ome.model.core.PixelsOriginalFileMap
 
PARENT - Static variable in class ome.model.core.PixelsOriginalFileMap
 
parent() - Method in class ome.model.core.PixelsOriginalFileMap
 
parent - Variable in class ome.model.fs.FilesetJobLink
 
PARENT - Static variable in class ome.model.fs.FilesetJobLink
 
parent() - Method in class ome.model.fs.FilesetJobLink
 
parent - Variable in class ome.model.jobs.JobOriginalFileLink
 
PARENT - Static variable in class ome.model.jobs.JobOriginalFileLink
 
parent() - Method in class ome.model.jobs.JobOriginalFileLink
 
parent - Variable in class ome.model.meta.GroupExperimenterMap
 
PARENT - Static variable in class ome.model.meta.GroupExperimenterMap
 
parent() - Method in class ome.model.meta.GroupExperimenterMap
 
parent - Variable in class ome.model.meta.ShareMember
 
PARENT - Static variable in class ome.model.meta.ShareMember
 
parent() - Method in class ome.model.meta.ShareMember
 
parent - Variable in class ome.model.screen.ScreenPlateLink
 
PARENT - Static variable in class ome.model.screen.ScreenPlateLink
 
parent() - Method in class ome.model.screen.ScreenPlateLink
 
parent - Variable in class ome.model.screen.WellReagentLink
 
PARENT - Static variable in class ome.model.screen.WellReagentLink
 
parent() - Method in class ome.model.screen.WellReagentLink
 
parentFolder - Variable in class ome.model.containers.Folder
 
PARENTFOLDER - Static variable in class ome.model.containers.Folder
 
parseIndexes() - Method in class ome.util.LSID
Attempts to parse and return the indexes for the LSID parsed from the LSID's string representation.
parseJavaClass() - Method in class ome.util.LSID
Attempts to parse and return the concrete Java class for the LSID from the LSID's string representation.
ParseJob - Class in ome.model.jobs
 
ParseJob() - Constructor for class ome.model.jobs.ParseJob
 
ParseJob(Long) - Constructor for class ome.model.jobs.ParseJob
 
ParseJob(Long, boolean) - Constructor for class ome.model.jobs.ParseJob
Main constructor.
parseString(String) - Static method in class ome.model.internal.Permissions
 
partial - Variable in class ome.model.core.Image
 
PARTIAL - Static variable in class ome.model.core.Image
 
path - Variable in class ome.model.acquisition.OTF
 
PATH - Static variable in class ome.model.acquisition.OTF
 
path - Variable in class ome.model.core.OriginalFile
 
PATH - Static variable in class ome.model.core.OriginalFile
 
Path - Class in ome.model.roi
Deprecated.
Path() - Constructor for class ome.model.roi.Path
Deprecated.
 
Path(Long) - Constructor for class ome.model.roi.Path
Deprecated.
 
Path(Long, boolean) - Constructor for class ome.model.roi.Path
Deprecated.
Main constructor.
path - Variable in class ome.util.SqlAction.DeleteLog
 
Period - Class in ome.parameters
parameter which defines the ordering as well as the start and offset for a List-valued result set.
Period(int, int) - Constructor for class ome.parameters.Period
 
PermDetails - Class in ome.util
wrapper class which can be used in HQL queries to properly load the full context for a permissions object.
PermDetails(IObject) - Constructor for class ome.util.PermDetails
 
PermissionMismatchGroupSecurityViolation - Exception in ome.conditions
Extension of GroupSecurityViolation signalling that an object has a permission which does not match the group permissions.
PermissionMismatchGroupSecurityViolation(String) - Constructor for exception ome.conditions.PermissionMismatchGroupSecurityViolation
 
PERMISSIONS - Static variable in class ome.model.internal.Details
 
Permissions - Class in ome.model.internal
class responsible for storing all Right/Role-based information for entities as well as various flags for the containing Details instance.
Permissions() - Constructor for class ome.model.internal.Permissions
simple constructor.
Permissions(Permissions) - Constructor for class ome.model.internal.Permissions
copy constructor.
Permissions.Flag - Enum in ome.model.internal
Currently unused.
Permissions.Right - Enum in ome.model.internal
enumeration of granted rights.
Permissions.Role - Enum in ome.model.internal
enumeration of currently active roles.
PERMS_FILTER - Static variable in class ome.model.acquisition.Arc
 
PERMS_FILTER - Static variable in class ome.model.acquisition.Detector
 
PERMS_FILTER - Static variable in class ome.model.acquisition.DetectorSettings
 
PERMS_FILTER - Static variable in class ome.model.acquisition.Dichroic
 
PERMS_FILTER - Static variable in class ome.model.acquisition.Filament
 
PERMS_FILTER - Static variable in class ome.model.acquisition.Filter
 
PERMS_FILTER - Static variable in class ome.model.acquisition.FilterSet
 
PERMS_FILTER - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
PERMS_FILTER - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
PERMS_FILTER - Static variable in class ome.model.acquisition.GenericExcitationSource
 
PERMS_FILTER - Static variable in class ome.model.acquisition.ImagingEnvironment
 
PERMS_FILTER - Static variable in class ome.model.acquisition.Instrument
 
PERMS_FILTER - Static variable in class ome.model.acquisition.Laser
 
PERMS_FILTER - Static variable in class ome.model.acquisition.LightEmittingDiode
 
PERMS_FILTER - Static variable in class ome.model.acquisition.LightPath
 
PERMS_FILTER - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
PERMS_FILTER - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
PERMS_FILTER - Static variable in class ome.model.acquisition.LightSettings
 
PERMS_FILTER - Static variable in class ome.model.acquisition.LightSource
 
PERMS_FILTER - Static variable in class ome.model.acquisition.Microscope
 
PERMS_FILTER - Static variable in class ome.model.acquisition.Objective
 
PERMS_FILTER - Static variable in class ome.model.acquisition.ObjectiveSettings
 
PERMS_FILTER - Static variable in class ome.model.acquisition.OTF
 
PERMS_FILTER - Static variable in class ome.model.acquisition.StageLabel
 
PERMS_FILTER - Static variable in class ome.model.acquisition.TransmittanceRange
 
PERMS_FILTER - Static variable in class ome.model.annotations.Annotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.BasicAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.BooleanAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.CommentAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.DoubleAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.FileAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.FilterAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.FolderAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.ImageAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.ListAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.LongAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.MapAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.NodeAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.NumericAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.PlateAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.RoiAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.SessionAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.TagAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.TermAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.TextAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.TimestampAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.TypeAnnotation
 
PERMS_FILTER - Static variable in class ome.model.annotations.WellAnnotationLink
 
PERMS_FILTER - Static variable in class ome.model.annotations.XmlAnnotation
 
PERMS_FILTER - Static variable in class ome.model.containers.Dataset
 
PERMS_FILTER - Static variable in class ome.model.containers.DatasetImageLink
 
PERMS_FILTER - Static variable in class ome.model.containers.Folder
 
PERMS_FILTER - Static variable in class ome.model.containers.FolderImageLink
 
PERMS_FILTER - Static variable in class ome.model.containers.FolderRoiLink
 
PERMS_FILTER - Static variable in class ome.model.containers.Project
 
PERMS_FILTER - Static variable in class ome.model.containers.ProjectDatasetLink
 
PERMS_FILTER - Static variable in class ome.model.core.Channel
 
PERMS_FILTER - Static variable in class ome.model.core.Image
 
PERMS_FILTER - Static variable in class ome.model.core.LogicalChannel
 
PERMS_FILTER - Static variable in class ome.model.core.OriginalFile
 
PERMS_FILTER - Static variable in class ome.model.core.Pixels
 
PERMS_FILTER - Static variable in class ome.model.core.PixelsOriginalFileMap
 
PERMS_FILTER - Static variable in class ome.model.core.PlaneInfo
 
PERMS_FILTER - Static variable in class ome.model.display.ChannelBinding
 
PERMS_FILTER - Static variable in class ome.model.display.CodomainMapContext
 
PERMS_FILTER - Static variable in class ome.model.display.ContrastStretchingContext
 
PERMS_FILTER - Static variable in class ome.model.display.PlaneSlicingContext
 
PERMS_FILTER - Static variable in class ome.model.display.ProjectionDef
 
PERMS_FILTER - Static variable in class ome.model.display.QuantumDef
 
PERMS_FILTER - Static variable in class ome.model.display.RenderingDef
 
PERMS_FILTER - Static variable in class ome.model.display.ReverseIntensityContext
 
PERMS_FILTER - Static variable in class ome.model.display.Thumbnail
 
PERMS_FILTER - Static variable in class ome.model.experiment.Experiment
 
PERMS_FILTER - Static variable in class ome.model.experiment.MicrobeamManipulation
 
PERMS_FILTER - Static variable in class ome.model.fs.Fileset
 
PERMS_FILTER - Static variable in class ome.model.fs.FilesetEntry
 
PERMS_FILTER - Static variable in class ome.model.fs.FilesetJobLink
 
PERMS_FILTER - Static variable in class ome.model.internal.Link
 
PERMS_FILTER - Static variable in class ome.model.jobs.ImportJob
Deprecated.
 
PERMS_FILTER - Static variable in class ome.model.jobs.IndexingJob
 
PERMS_FILTER - Static variable in class ome.model.jobs.IntegrityCheckJob
 
PERMS_FILTER - Static variable in class ome.model.jobs.Job
 
PERMS_FILTER - Static variable in class ome.model.jobs.JobOriginalFileLink
 
PERMS_FILTER - Static variable in class ome.model.jobs.MetadataImportJob
 
PERMS_FILTER - Static variable in class ome.model.jobs.ParseJob
 
PERMS_FILTER - Static variable in class ome.model.jobs.PixelDataJob
 
PERMS_FILTER - Static variable in class ome.model.jobs.ScriptJob
 
PERMS_FILTER - Static variable in class ome.model.jobs.ThumbnailGenerationJob
 
PERMS_FILTER - Static variable in class ome.model.jobs.UploadJob
 
PERMS_FILTER - Static variable in class ome.model.meta.ExternalInfo
 
PERMS_FILTER - Static variable in class ome.model.roi.AffineTransform
 
PERMS_FILTER - Static variable in class ome.model.roi.Ellipse
 
PERMS_FILTER - Static variable in class ome.model.roi.Label
 
PERMS_FILTER - Static variable in class ome.model.roi.Line
 
PERMS_FILTER - Static variable in class ome.model.roi.Mask
 
PERMS_FILTER - Static variable in class ome.model.roi.Path
Deprecated.
 
PERMS_FILTER - Static variable in class ome.model.roi.Point
 
PERMS_FILTER - Static variable in class ome.model.roi.Polygon
 
PERMS_FILTER - Static variable in class ome.model.roi.Polyline
 
PERMS_FILTER - Static variable in class ome.model.roi.Rectangle
 
PERMS_FILTER - Static variable in class ome.model.roi.Roi
 
PERMS_FILTER - Static variable in class ome.model.roi.Shape
 
PERMS_FILTER - Static variable in class ome.model.screen.Plate
 
PERMS_FILTER - Static variable in class ome.model.screen.PlateAcquisition
 
PERMS_FILTER - Static variable in class ome.model.screen.Reagent
 
PERMS_FILTER - Static variable in class ome.model.screen.Screen
 
PERMS_FILTER - Static variable in class ome.model.screen.ScreenPlateLink
 
PERMS_FILTER - Static variable in class ome.model.screen.Well
 
PERMS_FILTER - Static variable in class ome.model.screen.WellReagentLink
 
PERMS_FILTER - Static variable in class ome.model.screen.WellSample
 
PERMS_FILTER - Static variable in class ome.model.stats.StatsInfo
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Detector
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Dichroic
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Filter
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Instrument
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightPath
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.LightSource
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.acquisition.Objective
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.annotations.Annotation
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Dataset
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Folder
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.containers.Project
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Channel
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.Image
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.OriginalFile
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.core.PlaneInfo
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.fs.Fileset
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Experimenter
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.ExperimenterGroup
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Namespace
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Node
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.meta.Session
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Roi
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.roi.Shape
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Plate
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.PlateAcquisition
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Reagent
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Screen
 
PERMS_FILTER_ANNOTATIONLINKS - Static variable in class ome.model.screen.Well
 
PERMS_FILTER_CHANNELS - Static variable in class ome.model.core.LogicalChannel
 
PERMS_FILTER_CHANNELS - Static variable in class ome.model.core.Pixels
 
PERMS_FILTER_CHILDFOLDERS - Static variable in class ome.model.containers.Folder
 
PERMS_FILTER_DATASETLINKS - Static variable in class ome.model.containers.Project
 
PERMS_FILTER_DATASETLINKS - Static variable in class ome.model.core.Image
 
PERMS_FILTER_DETECTOR - Static variable in class ome.model.acquisition.Instrument
 
PERMS_FILTER_DICHROIC - Static variable in class ome.model.acquisition.Instrument
 
PERMS_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
PERMS_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
PERMS_FILTER_EMISSIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
PERMS_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.Filter
 
PERMS_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.FilterSet
 
PERMS_FILTER_EXCITATIONFILTERLINK - Static variable in class ome.model.acquisition.LightPath
 
PERMS_FILTER_FILESETENTRIES - Static variable in class ome.model.core.OriginalFile
 
PERMS_FILTER_FILTER - Static variable in class ome.model.acquisition.Instrument
 
PERMS_FILTER_FILTERSET - Static variable in class ome.model.acquisition.Instrument
 
PERMS_FILTER_FOLDERLINKS - Static variable in class ome.model.core.Image
 
PERMS_FILTER_FOLDERLINKS - Static variable in class ome.model.roi.Roi
 
PERMS_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Dataset
 
PERMS_FILTER_IMAGELINKS - Static variable in class ome.model.containers.Folder
 
PERMS_FILTER_IMAGES - Static variable in class ome.model.fs.Fileset
 
PERMS_FILTER_JOBLINKS - Static variable in class ome.model.fs.Fileset
 
PERMS_FILTER_LIGHTSOURCE - Static variable in class ome.model.acquisition.Instrument
 
PERMS_FILTER_LIGHTSOURCESETTINGS - Static variable in class ome.model.experiment.MicrobeamManipulation
 
PERMS_FILTER_MICROBEAMMANIPULATION - Static variable in class ome.model.experiment.Experiment
 
PERMS_FILTER_OBJECTIVE - Static variable in class ome.model.acquisition.Instrument
 
PERMS_FILTER_ORIGINALFILELINKS - Static variable in class ome.model.jobs.Job
 
PERMS_FILTER_OTF - Static variable in class ome.model.acquisition.Instrument
 
PERMS_FILTER_PIXELS - Static variable in class ome.model.core.Image
 
PERMS_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
 
PERMS_FILTER_PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
 
PERMS_FILTER_PLANEINFO - Static variable in class ome.model.core.Pixels
 
PERMS_FILTER_PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
 
PERMS_FILTER_PLATELINKS - Static variable in class ome.model.screen.Screen
 
PERMS_FILTER_PROJECTIONS - Static variable in class ome.model.display.RenderingDef
 
PERMS_FILTER_PROJECTLINKS - Static variable in class ome.model.containers.Dataset
 
PERMS_FILTER_REAGENTLINKS - Static variable in class ome.model.screen.Well
 
PERMS_FILTER_REAGENTS - Static variable in class ome.model.screen.Screen
 
PERMS_FILTER_ROILINKS - Static variable in class ome.model.containers.Folder
 
PERMS_FILTER_ROIS - Static variable in class ome.model.core.Image
 
PERMS_FILTER_SCREENLINKS - Static variable in class ome.model.screen.Plate
 
PERMS_FILTER_SETTINGS - Static variable in class ome.model.core.Pixels
 
PERMS_FILTER_SHAPES - Static variable in class ome.model.roi.Roi
 
PERMS_FILTER_SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
 
PERMS_FILTER_THUMBNAILS - Static variable in class ome.model.core.Pixels
 
PERMS_FILTER_USEDFILES - Static variable in class ome.model.fs.Fileset
 
PERMS_FILTER_WAVERENDERING - Static variable in class ome.model.display.RenderingDef
 
PERMS_FILTER_WELLLINKS - Static variable in class ome.model.screen.Reagent
 
PERMS_FILTER_WELLS - Static variable in class ome.model.screen.Plate
 
PERMS_FILTER_WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
 
PERMS_FILTER_WELLSAMPLES - Static variable in class ome.model.core.Image
 
PERMS_FILTER_WELLSAMPLES - Static variable in class ome.model.screen.Well
 
photometricInterpretation - Variable in class ome.model.core.LogicalChannel
 
PHOTOMETRICINTERPRETATION - Static variable in class ome.model.core.LogicalChannel
 
PhotometricInterpretation - Class in ome.model.enums
 
PhotometricInterpretation() - Constructor for class ome.model.enums.PhotometricInterpretation
 
PhotometricInterpretation(Long) - Constructor for class ome.model.enums.PhotometricInterpretation
 
PhotometricInterpretation(Long, boolean) - Constructor for class ome.model.enums.PhotometricInterpretation
Main constructor.
PhotometricInterpretation(String) - Constructor for class ome.model.enums.PhotometricInterpretation
 
PhotometricInterpretation.Details - Class in ome.model.enums
 
physicalSizeX - Variable in class ome.model.core.Pixels
 
PHYSICALSIZEX - Static variable in class ome.model.core.Pixels
 
physicalSizeY - Variable in class ome.model.core.Pixels
 
PHYSICALSIZEY - Static variable in class ome.model.core.Pixels
 
physicalSizeZ - Variable in class ome.model.core.Pixels
 
PHYSICALSIZEZ - Static variable in class ome.model.core.Pixels
 
pinHoleSize - Variable in class ome.model.core.LogicalChannel
 
PINHOLESIZE - Static variable in class ome.model.core.LogicalChannel
 
PixelData - Class in ome.util
Represents a block of pixel data.
PixelData(String, ByteBuffer) - Constructor for class ome.util.PixelData
Default constructor.
PixelDataJob - Class in ome.model.jobs
 
PixelDataJob() - Constructor for class ome.model.jobs.PixelDataJob
 
PixelDataJob(Long) - Constructor for class ome.model.jobs.PixelDataJob
 
PixelDataJob(Long, boolean) - Constructor for class ome.model.jobs.PixelDataJob
Main constructor.
pixels - Variable in class ome.model.core.Channel
 
PIXELS - Static variable in class ome.model.core.Channel
 
pixels - Variable in class ome.model.core.Image
 
PIXELS - Static variable in class ome.model.core.Image
 
Pixels - Class in ome.model.core
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Pixels() - Constructor for class ome.model.core.Pixels
 
Pixels(Long) - Constructor for class ome.model.core.Pixels
 
Pixels(Long, boolean) - Constructor for class ome.model.core.Pixels
Main constructor.
Pixels(Image, PixelsType, Integer, Integer, Integer, Integer, Integer, String, DimensionOrder) - Constructor for class ome.model.core.Pixels
 
pixels - Variable in class ome.model.core.PlaneInfo
 
PIXELS - Static variable in class ome.model.core.PlaneInfo
 
pixels - Variable in class ome.model.display.RenderingDef
 
PIXELS - Static variable in class ome.model.display.RenderingDef
 
pixels - Variable in class ome.model.display.Thumbnail
 
PIXELS - Static variable in class ome.model.display.Thumbnail
 
pixels - Variable in class ome.model.roi.Mask
 
PIXELS - Static variable in class ome.model.roi.Mask
 
Pixels.Details - Class in ome.model.core
 
pixelsFileMaps - Variable in class ome.model.core.OriginalFile
 
PIXELSFILEMAPS - Static variable in class ome.model.core.OriginalFile
 
pixelsFileMaps - Variable in class ome.model.core.Pixels
 
PIXELSFILEMAPS - Static variable in class ome.model.core.Pixels
 
PIXELSFILEMAPSCOUNTPEROWNER - Static variable in class ome.model.core.OriginalFile
 
PIXELSFILEMAPSCOUNTPEROWNER - Static variable in class ome.model.core.Pixels
 
pixelsID - Variable in exception ome.conditions.MissingPyramidException
 
PixelsOriginalFileMap - Class in ome.model.core
These filter definitions are used by the security system to eliminate non-readable objects from queries.
PixelsOriginalFileMap() - Constructor for class ome.model.core.PixelsOriginalFileMap
 
PixelsOriginalFileMap(Long) - Constructor for class ome.model.core.PixelsOriginalFileMap
 
PixelsOriginalFileMap(Long, boolean) - Constructor for class ome.model.core.PixelsOriginalFileMap
Main constructor.
PixelsOriginalFileMap(IObject, IObject) - Constructor for class ome.model.core.PixelsOriginalFileMap
 
PixelsOriginalFileMap.Details - Class in ome.model.core
 
pixelsType - Variable in class ome.model.acquisition.OTF
 
PIXELSTYPE - Static variable in class ome.model.acquisition.OTF
 
pixelsType - Variable in class ome.model.core.Pixels
 
PIXELSTYPE - Static variable in class ome.model.core.Pixels
 
PixelsType - Class in ome.model.enums
 
PixelsType() - Constructor for class ome.model.enums.PixelsType
 
PixelsType(Long) - Constructor for class ome.model.enums.PixelsType
 
PixelsType(Long, boolean) - Constructor for class ome.model.enums.PixelsType
Main constructor.
PixelsType(String) - Constructor for class ome.model.enums.PixelsType
 
pixelsType - Variable in class ome.util.PixelData
Type of the pixel data.
PixelsType.Details - Class in ome.model.enums
 
planeInfo - Variable in class ome.model.core.Pixels
 
PLANEINFO - Static variable in class ome.model.core.Pixels
 
PlaneInfo - Class in ome.model.core
These filter definitions are used by the security system to eliminate non-readable objects from queries.
PlaneInfo() - Constructor for class ome.model.core.PlaneInfo
 
PlaneInfo(Long) - Constructor for class ome.model.core.PlaneInfo
 
PlaneInfo(Long, boolean) - Constructor for class ome.model.core.PlaneInfo
Main constructor.
PlaneInfo(Pixels, Integer, Integer, Integer) - Constructor for class ome.model.core.PlaneInfo
 
PlaneInfo.Details - Class in ome.model.core
 
PlaneInfoAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
PlaneInfoAnnotationLink() - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink
 
PlaneInfoAnnotationLink(Long) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink
 
PlaneInfoAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink
Main constructor.
PlaneInfoAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.PlaneInfoAnnotationLink
 
PlaneInfoAnnotationLink.Details - Class in ome.model.annotations
 
planePrevious - Variable in class ome.model.display.PlaneSlicingContext
 
PLANEPREVIOUS - Static variable in class ome.model.display.PlaneSlicingContext
 
planeSelected - Variable in class ome.model.display.PlaneSlicingContext
 
PLANESELECTED - Static variable in class ome.model.display.PlaneSlicingContext
 
PlaneSlicingContext - Class in ome.model.display
 
PlaneSlicingContext() - Constructor for class ome.model.display.PlaneSlicingContext
 
PlaneSlicingContext(Long) - Constructor for class ome.model.display.PlaneSlicingContext
 
PlaneSlicingContext(Long, boolean) - Constructor for class ome.model.display.PlaneSlicingContext
Main constructor.
PlaneSlicingContext(Integer, Integer, Integer, Integer, Boolean) - Constructor for class ome.model.display.PlaneSlicingContext
 
Plate - Class in ome.model.screen
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Plate() - Constructor for class ome.model.screen.Plate
 
Plate(Long) - Constructor for class ome.model.screen.Plate
 
Plate(Long, boolean) - Constructor for class ome.model.screen.Plate
Main constructor.
Plate(String) - Constructor for class ome.model.screen.Plate
 
plate - Variable in class ome.model.screen.PlateAcquisition
 
PLATE - Static variable in class ome.model.screen.PlateAcquisition
 
plate - Variable in class ome.model.screen.Well
 
PLATE - Static variable in class ome.model.screen.Well
 
Plate.Details - Class in ome.model.screen
 
PlateAcquisition - Class in ome.model.screen
These filter definitions are used by the security system to eliminate non-readable objects from queries.
PlateAcquisition() - Constructor for class ome.model.screen.PlateAcquisition
 
PlateAcquisition(Long) - Constructor for class ome.model.screen.PlateAcquisition
 
PlateAcquisition(Long, boolean) - Constructor for class ome.model.screen.PlateAcquisition
Main constructor.
PlateAcquisition(Plate) - Constructor for class ome.model.screen.PlateAcquisition
 
plateAcquisition - Variable in class ome.model.screen.WellSample
 
PLATEACQUISITION - Static variable in class ome.model.screen.WellSample
 
PlateAcquisition.Details - Class in ome.model.screen
 
PlateAcquisitionAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
PlateAcquisitionAnnotationLink() - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink
 
PlateAcquisitionAnnotationLink(Long) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink
 
PlateAcquisitionAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink
Main constructor.
PlateAcquisitionAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.PlateAcquisitionAnnotationLink
 
PlateAcquisitionAnnotationLink.Details - Class in ome.model.annotations
 
plateAcquisitions - Variable in class ome.model.screen.Plate
 
PLATEACQUISITIONS - Static variable in class ome.model.screen.Plate
 
PlateAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
PlateAnnotationLink() - Constructor for class ome.model.annotations.PlateAnnotationLink
 
PlateAnnotationLink(Long) - Constructor for class ome.model.annotations.PlateAnnotationLink
 
PlateAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.PlateAnnotationLink
Main constructor.
PlateAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.PlateAnnotationLink
 
PlateAnnotationLink.Details - Class in ome.model.annotations
 
plateLinks - Variable in class ome.model.screen.Screen
 
PLATELINKS - Static variable in class ome.model.screen.Screen
 
PLATELINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Screen
 
pockelCell - Variable in class ome.model.acquisition.Laser
 
POCKELCELL - Static variable in class ome.model.acquisition.Laser
 
pockelCellSetting - Variable in class ome.model.core.LogicalChannel
 
POCKELCELLSETTING - Static variable in class ome.model.core.LogicalChannel
 
Point - Class in ome.model.roi
 
Point() - Constructor for class ome.model.roi.Point
 
Point(Long) - Constructor for class ome.model.roi.Point
 
Point(Long, boolean) - Constructor for class ome.model.roi.Point
Main constructor.
points - Variable in class ome.model.roi.Polygon
 
POINTS - Static variable in class ome.model.roi.Polygon
 
points - Variable in class ome.model.roi.Polyline
 
POINTS - Static variable in class ome.model.roi.Polyline
 
Polygon - Class in ome.model.roi
 
Polygon() - Constructor for class ome.model.roi.Polygon
 
Polygon(Long) - Constructor for class ome.model.roi.Polygon
 
Polygon(Long, boolean) - Constructor for class ome.model.roi.Polygon
Main constructor.
Polyline - Class in ome.model.roi
 
Polyline() - Constructor for class ome.model.roi.Polyline
 
Polyline(Long) - Constructor for class ome.model.roi.Polyline
 
Polyline(Long, boolean) - Constructor for class ome.model.roi.Polyline
Main constructor.
pop(Object) - Method in class ome.util.ContextFilter
 
positionX - Variable in class ome.model.acquisition.StageLabel
 
POSITIONX - Static variable in class ome.model.acquisition.StageLabel
 
positionX - Variable in class ome.model.core.PlaneInfo
 
POSITIONX - Static variable in class ome.model.core.PlaneInfo
 
positionY - Variable in class ome.model.acquisition.StageLabel
 
POSITIONY - Static variable in class ome.model.acquisition.StageLabel
 
positionY - Variable in class ome.model.core.PlaneInfo
 
POSITIONY - Static variable in class ome.model.core.PlaneInfo
 
positionZ - Variable in class ome.model.acquisition.StageLabel
 
POSITIONZ - Static variable in class ome.model.acquisition.StageLabel
 
positionZ - Variable in class ome.model.core.PlaneInfo
 
POSITIONZ - Static variable in class ome.model.core.PlaneInfo
 
PostgresqlDialect - Class in ome.util
select i from Image i where i.id in (:ids) becomes select i from Image i where i.id in (select id from temp_ids());
PostgresqlDialect() - Constructor for class ome.util.PostgresqlDialect
 
PostgresSqlAction - Class in ome.util.actions
 
PostgresSqlAction(JdbcTemplate) - Constructor for class ome.util.actions.PostgresSqlAction
 
posX - Variable in class ome.model.screen.WellSample
 
POSX - Static variable in class ome.model.screen.WellSample
 
posY - Variable in class ome.model.screen.WellSample
 
POSY - Static variable in class ome.model.screen.WellSample
 
Pow(long, int) - Static method in class ome.model.units.Conversion
Static helper for creating Conversion.Pow instances.
Pow(long, int) - Constructor for class ome.model.units.Conversion.Pow
 
power - Variable in class ome.model.acquisition.LightSource
 
POWER - Static variable in class ome.model.acquisition.LightSource
 
Power - Class in ome.model.units
class storing both a Power and a unit for that Power (e.g.
Power() - Constructor for class ome.model.units.Power
Deprecated.
Power(double, String) - Constructor for class ome.model.units.Power
 
Power(double, UnitsPower) - Constructor for class ome.model.units.Power
 
Power(double, Unit<Power>) - Constructor for class ome.model.units.Power
 
Power(Power) - Constructor for class ome.model.units.Power
 
prepareSession(long, long, long) - Method in class ome.util.actions.PostgresSqlAction
 
prepareSession(long, long, long) - Method in interface ome.util.SqlAction
Stores the current event context information in a temporary table so that triggers can make use of them.
Pressure - Class in ome.model.units
class storing both a Pressure and a unit for that Pressure (e.g.
Pressure() - Constructor for class ome.model.units.Pressure
Deprecated.
Pressure(double, String) - Constructor for class ome.model.units.Pressure
 
Pressure(double, UnitsPressure) - Constructor for class ome.model.units.Pressure
 
Pressure(double, Unit<Pressure>) - Constructor for class ome.model.units.Pressure
 
Pressure(Pressure) - Constructor for class ome.model.units.Pressure
 
previousContext(int) - Method in class ome.util.ContextFilter
 
previousPatch - Variable in class ome.model.meta.DBPatch
 
PREVIOUSPATCH - Static variable in class ome.model.meta.DBPatch
 
previousVersion - Variable in class ome.model.meta.DBPatch
 
PREVIOUSVERSION - Static variable in class ome.model.meta.DBPatch
 
Primitive - Interface in ome.model.internal
marker interface for all non-filterable types.
printThrowable(Throwable) - Method in class ome.util.SqlAction.Impl
 
PRIVATE - Static variable in class ome.model.internal.Permissions
an immutable Permissions instance with permissions only for the object owner..
Project - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Project() - Constructor for class ome.model.containers.Project
 
Project(Long) - Constructor for class ome.model.containers.Project
 
Project(Long, boolean) - Constructor for class ome.model.containers.Project
Main constructor.
Project(String) - Constructor for class ome.model.containers.Project
 
Project.Details - Class in ome.model.containers
 
ProjectAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ProjectAnnotationLink() - Constructor for class ome.model.annotations.ProjectAnnotationLink
 
ProjectAnnotationLink(Long) - Constructor for class ome.model.annotations.ProjectAnnotationLink
 
ProjectAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ProjectAnnotationLink
Main constructor.
ProjectAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ProjectAnnotationLink
 
ProjectAnnotationLink.Details - Class in ome.model.annotations
 
ProjectDatasetLink - Class in ome.model.containers
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ProjectDatasetLink() - Constructor for class ome.model.containers.ProjectDatasetLink
 
ProjectDatasetLink(Long) - Constructor for class ome.model.containers.ProjectDatasetLink
 
ProjectDatasetLink(Long, boolean) - Constructor for class ome.model.containers.ProjectDatasetLink
Main constructor.
ProjectDatasetLink(IObject, IObject) - Constructor for class ome.model.containers.ProjectDatasetLink
 
ProjectDatasetLink.Details - Class in ome.model.containers
 
ProjectionAxis - Class in ome.model.enums
 
ProjectionAxis() - Constructor for class ome.model.enums.ProjectionAxis
 
ProjectionAxis(Long) - Constructor for class ome.model.enums.ProjectionAxis
 
ProjectionAxis(Long, boolean) - Constructor for class ome.model.enums.ProjectionAxis
Main constructor.
ProjectionAxis(String) - Constructor for class ome.model.enums.ProjectionAxis
 
ProjectionAxis.Details - Class in ome.model.enums
 
ProjectionDef - Class in ome.model.display
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ProjectionDef() - Constructor for class ome.model.display.ProjectionDef
 
ProjectionDef(Long) - Constructor for class ome.model.display.ProjectionDef
 
ProjectionDef(Long, boolean) - Constructor for class ome.model.display.ProjectionDef
Main constructor.
ProjectionDef(RenderingDef, ProjectionAxis, ProjectionType, Boolean) - Constructor for class ome.model.display.ProjectionDef
 
ProjectionDef.Details - Class in ome.model.display
 
projections - Variable in class ome.model.display.RenderingDef
 
PROJECTIONS - Static variable in class ome.model.display.RenderingDef
 
ProjectionType - Class in ome.model.enums
 
ProjectionType() - Constructor for class ome.model.enums.ProjectionType
 
ProjectionType(Long) - Constructor for class ome.model.enums.ProjectionType
 
ProjectionType(Long, boolean) - Constructor for class ome.model.enums.ProjectionType
Main constructor.
ProjectionType(String) - Constructor for class ome.model.enums.ProjectionType
 
ProjectionType.Details - Class in ome.model.enums
 
projectLinks - Variable in class ome.model.containers.Dataset
 
PROJECTLINKS - Static variable in class ome.model.containers.Dataset
 
PROJECTLINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Dataset
 
protocolDescription - Variable in class ome.model.screen.Screen
 
PROTOCOLDESCRIPTION - Static variable in class ome.model.screen.Screen
 
protocolIdentifier - Variable in class ome.model.screen.Screen
 
PROTOCOLIDENTIFIER - Static variable in class ome.model.screen.Screen
 
proxy() - Method in class ome.model.acquisition.Arc
 
proxy() - Method in class ome.model.acquisition.Detector
 
proxy() - Method in class ome.model.acquisition.DetectorSettings
 
proxy() - Method in class ome.model.acquisition.Dichroic
 
proxy() - Method in class ome.model.acquisition.Filament
 
proxy() - Method in class ome.model.acquisition.Filter
 
proxy() - Method in class ome.model.acquisition.FilterSet
 
proxy() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
proxy() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
proxy() - Method in class ome.model.acquisition.GenericExcitationSource
 
proxy() - Method in class ome.model.acquisition.ImagingEnvironment
 
proxy() - Method in class ome.model.acquisition.Instrument
 
proxy() - Method in class ome.model.acquisition.Laser
 
proxy() - Method in class ome.model.acquisition.LightEmittingDiode
 
proxy() - Method in class ome.model.acquisition.LightPath
 
proxy() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
proxy() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
proxy() - Method in class ome.model.acquisition.LightSettings
 
proxy() - Method in class ome.model.acquisition.Microscope
 
proxy() - Method in class ome.model.acquisition.Objective
 
proxy() - Method in class ome.model.acquisition.ObjectiveSettings
 
proxy() - Method in class ome.model.acquisition.OTF
 
proxy() - Method in class ome.model.acquisition.StageLabel
 
proxy() - Method in class ome.model.acquisition.TransmittanceRange
 
proxy() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
proxy() - Method in class ome.model.annotations.BooleanAnnotation
 
proxy() - Method in class ome.model.annotations.ChannelAnnotationLink
 
proxy() - Method in class ome.model.annotations.CommentAnnotation
 
proxy() - Method in class ome.model.annotations.DatasetAnnotationLink
 
proxy() - Method in class ome.model.annotations.DetectorAnnotationLink
 
proxy() - Method in class ome.model.annotations.DichroicAnnotationLink
 
proxy() - Method in class ome.model.annotations.DoubleAnnotation
 
proxy() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
proxy() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
proxy() - Method in class ome.model.annotations.FileAnnotation
 
proxy() - Method in class ome.model.annotations.FilesetAnnotationLink
 
proxy() - Method in class ome.model.annotations.FilterAnnotationLink
 
proxy() - Method in class ome.model.annotations.FolderAnnotationLink
 
proxy() - Method in class ome.model.annotations.ImageAnnotationLink
 
proxy() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
proxy() - Method in class ome.model.annotations.LightPathAnnotationLink
 
proxy() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
proxy() - Method in class ome.model.annotations.ListAnnotation
 
proxy() - Method in class ome.model.annotations.LongAnnotation
 
proxy() - Method in class ome.model.annotations.MapAnnotation
 
proxy() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
proxy() - Method in class ome.model.annotations.NodeAnnotationLink
 
proxy() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
proxy() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
proxy() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
proxy() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
proxy() - Method in class ome.model.annotations.PlateAnnotationLink
 
proxy() - Method in class ome.model.annotations.ProjectAnnotationLink
 
proxy() - Method in class ome.model.annotations.ReagentAnnotationLink
 
proxy() - Method in class ome.model.annotations.RoiAnnotationLink
 
proxy() - Method in class ome.model.annotations.ScreenAnnotationLink
 
proxy() - Method in class ome.model.annotations.SessionAnnotationLink
 
proxy() - Method in class ome.model.annotations.ShapeAnnotationLink
 
proxy() - Method in class ome.model.annotations.TagAnnotation
 
proxy() - Method in class ome.model.annotations.TermAnnotation
 
proxy() - Method in class ome.model.annotations.TimestampAnnotation
 
proxy() - Method in class ome.model.annotations.WellAnnotationLink
 
proxy() - Method in class ome.model.annotations.XmlAnnotation
 
proxy() - Method in class ome.model.containers.Dataset
 
proxy() - Method in class ome.model.containers.DatasetImageLink
 
proxy() - Method in class ome.model.containers.Folder
 
proxy() - Method in class ome.model.containers.FolderImageLink
 
proxy() - Method in class ome.model.containers.FolderRoiLink
 
proxy() - Method in class ome.model.containers.Project
 
proxy() - Method in class ome.model.containers.ProjectDatasetLink
 
proxy() - Method in class ome.model.core.Channel
 
proxy() - Method in class ome.model.core.Image
 
proxy() - Method in class ome.model.core.LogicalChannel
 
proxy() - Method in class ome.model.core.OriginalFile
 
proxy() - Method in class ome.model.core.Pixels
 
proxy() - Method in class ome.model.core.PixelsOriginalFileMap
 
proxy() - Method in class ome.model.core.PlaneInfo
 
proxy() - Method in class ome.model.display.ChannelBinding
 
proxy() - Method in class ome.model.display.ContrastStretchingContext
 
proxy() - Method in class ome.model.display.PlaneSlicingContext
 
proxy() - Method in class ome.model.display.ProjectionDef
 
proxy() - Method in class ome.model.display.QuantumDef
 
proxy() - Method in class ome.model.display.RenderingDef
 
proxy() - Method in class ome.model.display.ReverseIntensityContext
 
proxy() - Method in class ome.model.display.Thumbnail
 
proxy() - Method in class ome.model.enums.AcquisitionMode
 
proxy() - Method in class ome.model.enums.AdminPrivilege
 
proxy() - Method in class ome.model.enums.ArcType
 
proxy() - Method in class ome.model.enums.Binning
 
proxy() - Method in class ome.model.enums.ChecksumAlgorithm
 
proxy() - Method in class ome.model.enums.ContrastMethod
 
proxy() - Method in class ome.model.enums.Correction
 
proxy() - Method in class ome.model.enums.DetectorType
 
proxy() - Method in class ome.model.enums.DimensionOrder
 
proxy() - Method in class ome.model.enums.EventType
 
proxy() - Method in class ome.model.enums.ExperimentType
 
proxy() - Method in class ome.model.enums.Family
 
proxy() - Method in class ome.model.enums.FilamentType
 
proxy() - Method in class ome.model.enums.FilterType
 
proxy() - Method in class ome.model.enums.Format
 
proxy() - Method in class ome.model.enums.Illumination
 
proxy() - Method in class ome.model.enums.Immersion
 
proxy() - Method in class ome.model.enums.LaserMedium
 
proxy() - Method in class ome.model.enums.LaserType
 
proxy() - Method in class ome.model.enums.Medium
 
proxy() - Method in class ome.model.enums.MicrobeamManipulationType
 
proxy() - Method in class ome.model.enums.MicroscopeType
 
proxy() - Method in class ome.model.enums.PhotometricInterpretation
 
proxy() - Method in class ome.model.enums.PixelsType
 
proxy() - Method in class ome.model.enums.ProjectionAxis
 
proxy() - Method in class ome.model.enums.ProjectionType
 
proxy() - Method in class ome.model.enums.Pulse
 
proxy() - Method in class ome.model.enums.RenderingModel
 
proxy() - Method in class ome.model.experiment.Experiment
 
proxy() - Method in class ome.model.experiment.MicrobeamManipulation
 
proxy() - Method in class ome.model.fs.Fileset
 
proxy() - Method in class ome.model.fs.FilesetEntry
 
proxy() - Method in class ome.model.fs.FilesetJobLink
 
proxy() - Method in class ome.model.internal.Link
 
proxy() - Method in class ome.model.jobs.ImportJob
Deprecated.
 
proxy() - Method in class ome.model.jobs.IndexingJob
 
proxy() - Method in class ome.model.jobs.IntegrityCheckJob
 
proxy() - Method in class ome.model.jobs.JobOriginalFileLink
 
proxy() - Method in class ome.model.jobs.JobStatus
 
proxy() - Method in class ome.model.jobs.MetadataImportJob
 
proxy() - Method in class ome.model.jobs.ParseJob
 
proxy() - Method in class ome.model.jobs.PixelDataJob
 
proxy() - Method in class ome.model.jobs.ScriptJob
 
proxy() - Method in class ome.model.jobs.ThumbnailGenerationJob
 
proxy() - Method in class ome.model.jobs.UploadJob
 
proxy() - Method in class ome.model.meta.DBPatch
 
proxy() - Method in class ome.model.meta.Event
 
proxy() - Method in class ome.model.meta.EventLog
 
proxy() - Method in class ome.model.meta.Experimenter
 
proxy() - Method in class ome.model.meta.ExperimenterGroup
 
proxy() - Method in class ome.model.meta.ExternalInfo
 
proxy() - Method in class ome.model.meta.GroupExperimenterMap
 
proxy() - Method in class ome.model.meta.Namespace
 
proxy() - Method in class ome.model.meta.Node
 
proxy() - Method in class ome.model.meta.Session
 
proxy() - Method in class ome.model.meta.Share
 
proxy() - Method in class ome.model.meta.ShareMember
 
proxy() - Method in class ome.model.roi.AffineTransform
 
proxy() - Method in class ome.model.roi.Ellipse
 
proxy() - Method in class ome.model.roi.Label
 
proxy() - Method in class ome.model.roi.Line
 
proxy() - Method in class ome.model.roi.Mask
 
proxy() - Method in class ome.model.roi.Path
Deprecated.
 
proxy() - Method in class ome.model.roi.Point
 
proxy() - Method in class ome.model.roi.Polygon
 
proxy() - Method in class ome.model.roi.Polyline
 
proxy() - Method in class ome.model.roi.Rectangle
 
proxy() - Method in class ome.model.roi.Roi
 
proxy() - Method in class ome.model.screen.Plate
 
proxy() - Method in class ome.model.screen.PlateAcquisition
 
proxy() - Method in class ome.model.screen.Reagent
 
proxy() - Method in class ome.model.screen.Screen
 
proxy() - Method in class ome.model.screen.ScreenPlateLink
 
proxy() - Method in class ome.model.screen.Well
 
proxy() - Method in class ome.model.screen.WellReagentLink
 
proxy() - Method in class ome.model.screen.WellSample
 
proxy() - Method in class ome.model.stats.StatsInfo
 
PsqlStrings - Class in ome.util.actions
 
PUBLIC - Static variable in class ome.model.internal.Permissions
an immutable Permissions instance with all Rights granted.
pulse - Variable in class ome.model.acquisition.Laser
 
PULSE - Static variable in class ome.model.acquisition.Laser
 
Pulse - Class in ome.model.enums
 
Pulse() - Constructor for class ome.model.enums.Pulse
 
Pulse(Long) - Constructor for class ome.model.enums.Pulse
 
Pulse(Long, boolean) - Constructor for class ome.model.enums.Pulse
Main constructor.
Pulse(String) - Constructor for class ome.model.enums.Pulse
 
Pulse.Details - Class in ome.model.enums
 
pump - Variable in class ome.model.acquisition.Laser
 
PUMP - Static variable in class ome.model.acquisition.Laser
 
push(Object) - Method in class ome.util.ContextFilter
 
putAt(String, Object) - Method in class ome.model.acquisition.Arc
 
putAt(String, Object) - Method in class ome.model.acquisition.Detector
 
putAt(String, Object) - Method in class ome.model.acquisition.DetectorSettings
 
putAt(String, Object) - Method in class ome.model.acquisition.Dichroic
 
putAt(String, Object) - Method in class ome.model.acquisition.Filament
 
putAt(String, Object) - Method in class ome.model.acquisition.Filter
 
putAt(String, Object) - Method in class ome.model.acquisition.FilterSet
 
putAt(String, Object) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
putAt(String, Object) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
putAt(String, Object) - Method in class ome.model.acquisition.GenericExcitationSource
 
putAt(String, Object) - Method in class ome.model.acquisition.ImagingEnvironment
 
putAt(String, Object) - Method in class ome.model.acquisition.Instrument
 
putAt(String, Object) - Method in class ome.model.acquisition.Laser
 
putAt(String, Object) - Method in class ome.model.acquisition.LightEmittingDiode
 
putAt(String, Object) - Method in class ome.model.acquisition.LightPath
 
putAt(String, Object) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
putAt(String, Object) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
putAt(String, Object) - Method in class ome.model.acquisition.LightSettings
 
putAt(String, Object) - Method in class ome.model.acquisition.LightSource
 
putAt(String, Object) - Method in class ome.model.acquisition.Microscope
 
putAt(String, Object) - Method in class ome.model.acquisition.Objective
 
putAt(String, Object) - Method in class ome.model.acquisition.ObjectiveSettings
 
putAt(String, Object) - Method in class ome.model.acquisition.OTF
 
putAt(String, Object) - Method in class ome.model.acquisition.StageLabel
 
putAt(String, Object) - Method in class ome.model.acquisition.TransmittanceRange
 
putAt(String, Object) - Method in class ome.model.annotations.Annotation
 
putAt(String, Object) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.BasicAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.BooleanAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.ChannelAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.CommentAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.DatasetAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.DetectorAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.DichroicAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.DoubleAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.FileAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.FilesetAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.FilterAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.FolderAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.ImageAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.LightPathAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.ListAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.LongAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.MapAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.NodeAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.NumericAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.PlateAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.ProjectAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.ReagentAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.RoiAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.ScreenAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.SessionAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.ShapeAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.TagAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.TermAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.TextAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.TimestampAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.TypeAnnotation
 
putAt(String, Object) - Method in class ome.model.annotations.WellAnnotationLink
 
putAt(String, Object) - Method in class ome.model.annotations.XmlAnnotation
 
putAt(String, Object) - Method in class ome.model.containers.Dataset
 
putAt(String, Object) - Method in class ome.model.containers.DatasetImageLink
 
putAt(String, Object) - Method in class ome.model.containers.Folder
 
putAt(String, Object) - Method in class ome.model.containers.FolderImageLink
 
putAt(String, Object) - Method in class ome.model.containers.FolderRoiLink
 
putAt(String, Object) - Method in class ome.model.containers.Project
 
putAt(String, Object) - Method in class ome.model.containers.ProjectDatasetLink
 
putAt(String, Object) - Method in class ome.model.core.Channel
 
putAt(String, Object) - Method in class ome.model.core.Image
 
putAt(String, Object) - Method in class ome.model.core.LogicalChannel
 
putAt(String, Object) - Method in class ome.model.core.OriginalFile
 
putAt(String, Object) - Method in class ome.model.core.Pixels
 
putAt(String, Object) - Method in class ome.model.core.PixelsOriginalFileMap
 
putAt(String, Object) - Method in class ome.model.core.PlaneInfo
 
putAt(String, Object) - Method in class ome.model.display.ChannelBinding
 
putAt(String, Object) - Method in class ome.model.display.CodomainMapContext
 
putAt(String, Object) - Method in class ome.model.display.ContrastStretchingContext
 
putAt(String, Object) - Method in class ome.model.display.PlaneSlicingContext
 
putAt(String, Object) - Method in class ome.model.display.ProjectionDef
 
putAt(String, Object) - Method in class ome.model.display.QuantumDef
 
putAt(String, Object) - Method in class ome.model.display.RenderingDef
 
putAt(String, Object) - Method in class ome.model.display.ReverseIntensityContext
 
putAt(String, Object) - Method in class ome.model.display.Thumbnail
 
putAt(String, Object) - Method in class ome.model.enums.AcquisitionMode
 
putAt(String, Object) - Method in class ome.model.enums.AdminPrivilege
 
putAt(String, Object) - Method in class ome.model.enums.ArcType
 
putAt(String, Object) - Method in class ome.model.enums.Binning
 
putAt(String, Object) - Method in class ome.model.enums.ChecksumAlgorithm
 
putAt(String, Object) - Method in class ome.model.enums.ContrastMethod
 
putAt(String, Object) - Method in class ome.model.enums.Correction
 
putAt(String, Object) - Method in class ome.model.enums.DetectorType
 
putAt(String, Object) - Method in class ome.model.enums.DimensionOrder
 
putAt(String, Object) - Method in class ome.model.enums.EventType
 
putAt(String, Object) - Method in class ome.model.enums.ExperimentType
 
putAt(String, Object) - Method in class ome.model.enums.Family
 
putAt(String, Object) - Method in class ome.model.enums.FilamentType
 
putAt(String, Object) - Method in class ome.model.enums.FilterType
 
putAt(String, Object) - Method in class ome.model.enums.Format
 
putAt(String, Object) - Method in class ome.model.enums.Illumination
 
putAt(String, Object) - Method in class ome.model.enums.Immersion
 
putAt(String, Object) - Method in class ome.model.enums.LaserMedium
 
putAt(String, Object) - Method in class ome.model.enums.LaserType
 
putAt(String, Object) - Method in class ome.model.enums.Medium
 
putAt(String, Object) - Method in class ome.model.enums.MicrobeamManipulationType
 
putAt(String, Object) - Method in class ome.model.enums.MicroscopeType
 
putAt(String, Object) - Method in class ome.model.enums.PhotometricInterpretation
 
putAt(String, Object) - Method in class ome.model.enums.PixelsType
 
putAt(String, Object) - Method in class ome.model.enums.ProjectionAxis
 
putAt(String, Object) - Method in class ome.model.enums.ProjectionType
 
putAt(String, Object) - Method in class ome.model.enums.Pulse
 
putAt(String, Object) - Method in class ome.model.enums.RenderingModel
 
putAt(String, Object) - Method in class ome.model.experiment.Experiment
 
putAt(String, Object) - Method in class ome.model.experiment.MicrobeamManipulation
 
putAt(String, Object) - Method in class ome.model.fs.Fileset
 
putAt(String, Object) - Method in class ome.model.fs.FilesetEntry
 
putAt(String, Object) - Method in class ome.model.fs.FilesetJobLink
 
putAt(String, Object) - Method in class ome.model.internal.Details
 
putAt(String, Object) - Method in class ome.model.internal.Link
 
putAt(String, Object) - Method in interface ome.model.IObject
stores a value in this instance.
putAt(String, Object) - Method in class ome.model.jobs.ImportJob
Deprecated.
 
putAt(String, Object) - Method in class ome.model.jobs.IndexingJob
 
putAt(String, Object) - Method in class ome.model.jobs.IntegrityCheckJob
 
putAt(String, Object) - Method in class ome.model.jobs.Job
 
putAt(String, Object) - Method in class ome.model.jobs.JobOriginalFileLink
 
putAt(String, Object) - Method in class ome.model.jobs.JobStatus
 
putAt(String, Object) - Method in class ome.model.jobs.MetadataImportJob
 
putAt(String, Object) - Method in class ome.model.jobs.ParseJob
 
putAt(String, Object) - Method in class ome.model.jobs.PixelDataJob
 
putAt(String, Object) - Method in class ome.model.jobs.ScriptJob
 
putAt(String, Object) - Method in class ome.model.jobs.ThumbnailGenerationJob
 
putAt(String, Object) - Method in class ome.model.jobs.UploadJob
 
putAt(String, Object) - Method in class ome.model.meta.DBPatch
 
putAt(String, Object) - Method in class ome.model.meta.Event
 
putAt(String, Object) - Method in class ome.model.meta.EventLog
 
putAt(String, Object) - Method in class ome.model.meta.Experimenter
 
putAt(String, Object) - Method in class ome.model.meta.ExperimenterGroup
 
putAt(String, Object) - Method in class ome.model.meta.ExternalInfo
 
putAt(String, Object) - Method in class ome.model.meta.GroupExperimenterMap
 
putAt(String, Object) - Method in class ome.model.meta.Namespace
 
putAt(String, Object) - Method in class ome.model.meta.Node
 
putAt(String, Object) - Method in class ome.model.meta.Session
 
putAt(String, Object) - Method in class ome.model.meta.Share
 
putAt(String, Object) - Method in class ome.model.meta.ShareMember
 
putAt(String, Object) - Method in class ome.model.roi.AffineTransform
 
putAt(String, Object) - Method in class ome.model.roi.Ellipse
 
putAt(String, Object) - Method in class ome.model.roi.Label
 
putAt(String, Object) - Method in class ome.model.roi.Line
 
putAt(String, Object) - Method in class ome.model.roi.Mask
 
putAt(String, Object) - Method in class ome.model.roi.Path
Deprecated.
 
putAt(String, Object) - Method in class ome.model.roi.Point
 
putAt(String, Object) - Method in class ome.model.roi.Polygon
 
putAt(String, Object) - Method in class ome.model.roi.Polyline
 
putAt(String, Object) - Method in class ome.model.roi.Rectangle
 
putAt(String, Object) - Method in class ome.model.roi.Roi
 
putAt(String, Object) - Method in class ome.model.roi.Shape
 
putAt(String, Object) - Method in class ome.model.screen.Plate
 
putAt(String, Object) - Method in class ome.model.screen.PlateAcquisition
 
putAt(String, Object) - Method in class ome.model.screen.Reagent
 
putAt(String, Object) - Method in class ome.model.screen.Screen
 
putAt(String, Object) - Method in class ome.model.screen.ScreenPlateLink
 
putAt(String, Object) - Method in class ome.model.screen.Well
 
putAt(String, Object) - Method in class ome.model.screen.WellReagentLink
 
putAt(String, Object) - Method in class ome.model.screen.WellSample
 
putAt(String, Object) - Method in class ome.model.stats.StatsInfo
 
putAt(String, Object) - Method in class ome.util.PermDetails
 

Q

quantization - Variable in class ome.model.display.RenderingDef
 
QUANTIZATION - Static variable in class ome.model.display.RenderingDef
 
QuantumDef - Class in ome.model.display
These filter definitions are used by the security system to eliminate non-readable objects from queries.
QuantumDef() - Constructor for class ome.model.display.QuantumDef
 
QuantumDef(Long) - Constructor for class ome.model.display.QuantumDef
 
QuantumDef(Long, boolean) - Constructor for class ome.model.display.QuantumDef
Main constructor.
QuantumDef(Integer, Integer, Integer) - Constructor for class ome.model.display.QuantumDef
 
QuantumDef.Details - Class in ome.model.display
 
QueryParameter - Class in ome.parameters
arbitrary query parameter used by ome.api.IQuery.
QueryParameter(String, Class, Object) - Constructor for class ome.parameters.QueryParameter
 
queryParameters() - Method in class ome.parameters.Parameters
copies all QueryParameters to an array.

R

radiusX - Variable in class ome.model.roi.Ellipse
 
RADIUSX - Static variable in class ome.model.roi.Ellipse
 
radiusY - Variable in class ome.model.roi.Ellipse
 
RADIUSY - Static variable in class ome.model.roi.Ellipse
 
Rat(long, long) - Static method in class ome.model.units.Conversion
Static helper for creating Conversion.Rat instances.
Rat(Conversion...) - Static method in class ome.model.units.Conversion
Static helper for creating Conversion.Rat instances.
Rat(long, long) - Constructor for class ome.model.units.Conversion.Rat
 
Rat(Conversion...) - Constructor for class ome.model.units.Conversion.Rat
 
RdfPrinter - Class in ome.util
walks an object graph producing RDF-like output.
RdfPrinter() - Constructor for class ome.util.RdfPrinter
 
READ_ONLY - Static variable in class ome.model.internal.Permissions
an immutable Permissions instance with all Permissions.Right.WRITE rights turned off.
ReadOnlyGroupSecurityViolation - Exception in ome.conditions
Extension of GroupSecurityViolation signalling that an admin or group owner has tried to make a modification in a private group OR that the member of a read-only group has tried to do the same.
ReadOnlyGroupSecurityViolation(String) - Constructor for exception ome.conditions.ReadOnlyGroupSecurityViolation
 
readOutRate - Variable in class ome.model.acquisition.DetectorSettings
 
READOUTRATE - Static variable in class ome.model.acquisition.DetectorSettings
 
Reagent - Class in ome.model.screen
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Reagent() - Constructor for class ome.model.screen.Reagent
 
Reagent(Long) - Constructor for class ome.model.screen.Reagent
 
Reagent(Long, boolean) - Constructor for class ome.model.screen.Reagent
Main constructor.
Reagent(Screen) - Constructor for class ome.model.screen.Reagent
 
Reagent.Details - Class in ome.model.screen
 
ReagentAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ReagentAnnotationLink() - Constructor for class ome.model.annotations.ReagentAnnotationLink
 
ReagentAnnotationLink(Long) - Constructor for class ome.model.annotations.ReagentAnnotationLink
 
ReagentAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ReagentAnnotationLink
Main constructor.
ReagentAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ReagentAnnotationLink
 
ReagentAnnotationLink.Details - Class in ome.model.annotations
 
reagentIdentifier - Variable in class ome.model.screen.Reagent
 
REAGENTIDENTIFIER - Static variable in class ome.model.screen.Reagent
 
reagentLinks - Variable in class ome.model.screen.Well
 
REAGENTLINKS - Static variable in class ome.model.screen.Well
 
REAGENTLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Well
 
reagents - Variable in class ome.model.screen.Screen
 
REAGENTS - Static variable in class ome.model.screen.Screen
 
reagentSetDescription - Variable in class ome.model.screen.Screen
 
REAGENTSETDESCRIPTION - Static variable in class ome.model.screen.Screen
 
reagentSetIdentifier - Variable in class ome.model.screen.Screen
 
REAGENTSETIDENTIFIER - Static variable in class ome.model.screen.Screen
 
Rectangle - Class in ome.model.roi
 
Rectangle() - Constructor for class ome.model.roi.Rectangle
 
Rectangle(Long) - Constructor for class ome.model.roi.Rectangle
 
Rectangle(Long, boolean) - Constructor for class ome.model.roi.Rectangle
Main constructor.
red - Variable in class ome.model.core.Channel
 
RED - Static variable in class ome.model.core.Channel
 
red - Variable in class ome.model.display.ChannelBinding
 
RED - Static variable in class ome.model.display.ChannelBinding
 
red - Variable in class ome.model.screen.Well
 
RED - Static variable in class ome.model.screen.Well
 
ref - Variable in class ome.model.display.Thumbnail
 
REF - Static variable in class ome.model.display.Thumbnail
 
reflectiveNewInstance(T) - Static method in class ome.util.ShallowCopy
 
refractiveIndex - Variable in class ome.model.acquisition.ObjectiveSettings
 
REFRACTIVEINDEX - Static variable in class ome.model.acquisition.ObjectiveSettings
 
refreshEventLogFromUpdatedAnnotations() - Method in class ome.util.SqlAction.Impl
 
refreshEventLogFromUpdatedAnnotations() - Method in interface ome.util.SqlAction
Convert the _reindexing_required table to REINDEX entries in the event log.
relatedTo - Variable in class ome.model.core.Pixels
Deprecated.
RELATEDTO - Static variable in class ome.model.core.Pixels
Deprecated.
releaseSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction
 
releaseSavepoint(String) - Method in interface ome.util.SqlAction
 
remove(Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister
 
remove() - Method in class ome.util.EmptyIterator
 
removeAnnotationAnnotationLink(AnnotationAnnotationLink) - Method in class ome.model.annotations.Annotation
removes a single element from this set and makes the inverse call on ome.model.annotations.AnnotationAnnotationLink
removeAnnotationAnnotationLink(AnnotationAnnotationLink, boolean) - Method in class ome.model.annotations.Annotation
removes the given AnnotationAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkAnnotation again if loaded.
removeAnnotationAnnotationLinkSet(Collection<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation
use like removeAnnotationAnnotationLink
removeChannel(Channel) - Method in class ome.model.core.LogicalChannel
removes a single element from this set and makes the inverse call on ome.model.core.Channel
removeChannel(Channel) - Method in class ome.model.core.Pixels
removes a single element from this set and makes the inverse call on ome.model.core.Channel
removeChannelAnnotationLink(ChannelAnnotationLink) - Method in class ome.model.core.Channel
removes a single element from this set and makes the inverse call on ome.model.annotations.ChannelAnnotationLink
removeChannelAnnotationLink(ChannelAnnotationLink, boolean) - Method in class ome.model.core.Channel
removes the given ChannelAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkChannel again if loaded.
removeChannelAnnotationLinkSet(Collection<ChannelAnnotationLink>) - Method in class ome.model.core.Channel
use like removeChannelAnnotationLink
removeChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef
removes a single element from this set and makes the inverse call on ome.model.display.ChannelBinding
removeChannelBindingSet(Collection<ChannelBinding>) - Method in class ome.model.display.RenderingDef
use like removeChannelBinding
removeChannelSet(Collection<Channel>) - Method in class ome.model.core.LogicalChannel
use like removeChannel
removeChannelSet(Collection<Channel>) - Method in class ome.model.core.Pixels
use like removeChannel
removeChildFolders(Folder) - Method in class ome.model.containers.Folder
removes a single element from this set and makes the inverse call on ome.model.containers.Folder
removeChildFoldersSet(Collection<Folder>) - Method in class ome.model.containers.Folder
use like removeFolder
removeCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding
removes a single element from this set and makes the inverse call on ome.model.display.CodomainMapContext
removeCodomainMapContextSet(Collection<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding
use like removeCodomainMapContext
removeDatasetAnnotationLink(DatasetAnnotationLink) - Method in class ome.model.containers.Dataset
removes a single element from this set and makes the inverse call on ome.model.annotations.DatasetAnnotationLink
removeDatasetAnnotationLink(DatasetAnnotationLink, boolean) - Method in class ome.model.containers.Dataset
removes the given DatasetAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkDataset again if loaded.
removeDatasetAnnotationLinkSet(Collection<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset
use like removeDatasetAnnotationLink
removeDatasetImageLink(DatasetImageLink) - Method in class ome.model.containers.Dataset
removes a single element from this set and makes the inverse call on ome.model.containers.DatasetImageLink
removeDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.containers.Dataset
removes the given DatasetImageLink from imageLinks, allowing for recursion -- whether or not the removal will call unlinkDataset again if loaded.
removeDatasetImageLink(DatasetImageLink) - Method in class ome.model.core.Image
removes a single element from this set and makes the inverse call on ome.model.containers.DatasetImageLink
removeDatasetImageLink(DatasetImageLink, boolean) - Method in class ome.model.core.Image
removes the given DatasetImageLink from datasetLinks, allowing for recursion -- whether or not the removal will call unlinkImage again if loaded.
removeDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.containers.Dataset
use like removeDatasetImageLink
removeDatasetImageLinkSet(Collection<DatasetImageLink>) - Method in class ome.model.core.Image
use like removeDatasetImageLink
removeDetector(Detector) - Method in class ome.model.acquisition.Instrument
removes a single element from this set and makes the inverse call on ome.model.acquisition.Detector
removeDetectorAnnotationLink(DetectorAnnotationLink) - Method in class ome.model.acquisition.Detector
removes a single element from this set and makes the inverse call on ome.model.annotations.DetectorAnnotationLink
removeDetectorAnnotationLink(DetectorAnnotationLink, boolean) - Method in class ome.model.acquisition.Detector
removes the given DetectorAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkDetector again if loaded.
removeDetectorAnnotationLinkSet(Collection<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector
use like removeDetectorAnnotationLink
removeDetectorSet(Collection<Detector>) - Method in class ome.model.acquisition.Instrument
use like removeDetector
removeDichroic(Dichroic) - Method in class ome.model.acquisition.Instrument
removes a single element from this set and makes the inverse call on ome.model.acquisition.Dichroic
removeDichroicAnnotationLink(DichroicAnnotationLink) - Method in class ome.model.acquisition.Dichroic
removes a single element from this set and makes the inverse call on ome.model.annotations.DichroicAnnotationLink
removeDichroicAnnotationLink(DichroicAnnotationLink, boolean) - Method in class ome.model.acquisition.Dichroic
removes the given DichroicAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkDichroic again if loaded.
removeDichroicAnnotationLinkSet(Collection<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic
use like removeDichroicAnnotationLink
removeDichroicSet(Collection<Dichroic>) - Method in class ome.model.acquisition.Instrument
use like removeDichroic
RemovedSessionException - Exception in ome.conditions
Client attempted to access a session which has either expired or been closed manually.
RemovedSessionException(String) - Constructor for exception ome.conditions.RemovedSessionException
 
removeEvent(Event) - Method in class ome.model.meta.Session
removes a single element from this set and makes the inverse call on ome.model.meta.Event
removeEventLog(EventLog) - Method in class ome.model.meta.Event
removes a single element from this set and makes the inverse call on ome.model.meta.EventLog
removeEventLogSet(Collection<EventLog>) - Method in class ome.model.meta.Event
use like removeEventLog
removeEventSet(Collection<Event>) - Method in class ome.model.meta.Session
use like removeEvent
removeExperimenterAnnotationLink(ExperimenterAnnotationLink) - Method in class ome.model.meta.Experimenter
removes a single element from this set and makes the inverse call on ome.model.annotations.ExperimenterAnnotationLink
removeExperimenterAnnotationLink(ExperimenterAnnotationLink, boolean) - Method in class ome.model.meta.Experimenter
removes the given ExperimenterAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkExperimenter again if loaded.
removeExperimenterAnnotationLinkSet(Collection<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter
use like removeExperimenterAnnotationLink
removeExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink) - Method in class ome.model.meta.ExperimenterGroup
removes a single element from this set and makes the inverse call on ome.model.annotations.ExperimenterGroupAnnotationLink
removeExperimenterGroupAnnotationLink(ExperimenterGroupAnnotationLink, boolean) - Method in class ome.model.meta.ExperimenterGroup
removes the given ExperimenterGroupAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkExperimenterGroup again if loaded.
removeExperimenterGroupAnnotationLinkSet(Collection<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup
use like removeExperimenterGroupAnnotationLink
removeFilesetAnnotationLink(FilesetAnnotationLink) - Method in class ome.model.fs.Fileset
removes a single element from this set and makes the inverse call on ome.model.annotations.FilesetAnnotationLink
removeFilesetAnnotationLink(FilesetAnnotationLink, boolean) - Method in class ome.model.fs.Fileset
removes the given FilesetAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFileset again if loaded.
removeFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset
use like removeFilesetAnnotationLink
removeFilesetEntry(FilesetEntry) - Method in class ome.model.core.OriginalFile
removes a single element from this set and makes the inverse call on ome.model.fs.FilesetEntry
removeFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset
removes a single element from this set and makes the inverse call on ome.model.fs.FilesetEntry
removeFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.core.OriginalFile
use like removeFilesetEntry
removeFilesetEntrySet(Collection<FilesetEntry>) - Method in class ome.model.fs.Fileset
use like removeFilesetEntry
removeFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset
removes a single element from this set and makes the inverse call on ome.model.fs.FilesetJobLink
removeFilesetJobLink(FilesetJobLink, boolean) - Method in class ome.model.fs.Fileset
removes the given FilesetJobLink from jobLinks, allowing for recursion -- whether or not the removal will call unlinkFileset again if loaded.
removeFilesetJobLinkSet(Collection<FilesetJobLink>) - Method in class ome.model.fs.Fileset
use like removeFilesetJobLink
removeFilter(Filter) - Method in class ome.model.acquisition.Instrument
removes a single element from this set and makes the inverse call on ome.model.acquisition.Filter
removeFilterAnnotationLink(FilterAnnotationLink) - Method in class ome.model.acquisition.Filter
removes a single element from this set and makes the inverse call on ome.model.annotations.FilterAnnotationLink
removeFilterAnnotationLink(FilterAnnotationLink, boolean) - Method in class ome.model.acquisition.Filter
removes the given FilterAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFilter again if loaded.
removeFilterAnnotationLinkSet(Collection<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter
use like removeFilterAnnotationLink
removeFilterSet(Collection<Filter>) - Method in class ome.model.acquisition.Instrument
use like removeFilter
removeFilterSet(FilterSet) - Method in class ome.model.acquisition.Instrument
removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSet
removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.Filter
removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetEmissionFilterLink
removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.Filter
removes the given FilterSetEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilter again if loaded.
removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink) - Method in class ome.model.acquisition.FilterSet
removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetEmissionFilterLink
removeFilterSetEmissionFilterLink(FilterSetEmissionFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet
removes the given FilterSetEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilterSet again if loaded.
removeFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter
use like removeFilterSetEmissionFilterLink
removeFilterSetEmissionFilterLinkSet(Collection<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet
use like removeFilterSetEmissionFilterLink
removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.Filter
removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetExcitationFilterLink
removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.Filter
removes the given FilterSetExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilter again if loaded.
removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink) - Method in class ome.model.acquisition.FilterSet
removes a single element from this set and makes the inverse call on ome.model.acquisition.FilterSetExcitationFilterLink
removeFilterSetExcitationFilterLink(FilterSetExcitationFilterLink, boolean) - Method in class ome.model.acquisition.FilterSet
removes the given FilterSetExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkFilterSet again if loaded.
removeFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter
use like removeFilterSetExcitationFilterLink
removeFilterSetExcitationFilterLinkSet(Collection<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet
use like removeFilterSetExcitationFilterLink
removeFilterSetSet(Collection<FilterSet>) - Method in class ome.model.acquisition.Instrument
use like removeFilterSet
removeFolderAnnotationLink(FolderAnnotationLink) - Method in class ome.model.containers.Folder
removes a single element from this set and makes the inverse call on ome.model.annotations.FolderAnnotationLink
removeFolderAnnotationLink(FolderAnnotationLink, boolean) - Method in class ome.model.containers.Folder
removes the given FolderAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFolder again if loaded.
removeFolderAnnotationLinkSet(Collection<FolderAnnotationLink>) - Method in class ome.model.containers.Folder
use like removeFolderAnnotationLink
removeFolderImageLink(FolderImageLink) - Method in class ome.model.containers.Folder
removes a single element from this set and makes the inverse call on ome.model.containers.FolderImageLink
removeFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.containers.Folder
removes the given FolderImageLink from imageLinks, allowing for recursion -- whether or not the removal will call unlinkFolder again if loaded.
removeFolderImageLink(FolderImageLink) - Method in class ome.model.core.Image
removes a single element from this set and makes the inverse call on ome.model.containers.FolderImageLink
removeFolderImageLink(FolderImageLink, boolean) - Method in class ome.model.core.Image
removes the given FolderImageLink from folderLinks, allowing for recursion -- whether or not the removal will call unlinkImage again if loaded.
removeFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.containers.Folder
use like removeFolderImageLink
removeFolderImageLinkSet(Collection<FolderImageLink>) - Method in class ome.model.core.Image
use like removeFolderImageLink
removeFolderRoiLink(FolderRoiLink) - Method in class ome.model.containers.Folder
removes a single element from this set and makes the inverse call on ome.model.containers.FolderRoiLink
removeFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.containers.Folder
removes the given FolderRoiLink from roiLinks, allowing for recursion -- whether or not the removal will call unlinkFolder again if loaded.
removeFolderRoiLink(FolderRoiLink) - Method in class ome.model.roi.Roi
removes a single element from this set and makes the inverse call on ome.model.containers.FolderRoiLink
removeFolderRoiLink(FolderRoiLink, boolean) - Method in class ome.model.roi.Roi
removes the given FolderRoiLink from folderLinks, allowing for recursion -- whether or not the removal will call unlinkRoi again if loaded.
removeFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.containers.Folder
use like removeFolderRoiLink
removeFolderRoiLinkSet(Collection<FolderRoiLink>) - Method in class ome.model.roi.Roi
use like removeFolderRoiLink
removeGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter
removes a single element from this set and makes the inverse call on ome.model.meta.GroupExperimenterMap
removeGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.Experimenter
removes the given GroupExperimenterMap from groupExperimenterMap, allowing for recursion -- whether or not the removal will call unlinkExperimenter again if loaded.
removeGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.ExperimenterGroup
removes a single element from this set and makes the inverse call on ome.model.meta.GroupExperimenterMap
removeGroupExperimenterMap(GroupExperimenterMap, boolean) - Method in class ome.model.meta.ExperimenterGroup
removes the given GroupExperimenterMap from groupExperimenterMap, allowing for recursion -- whether or not the removal will call unlinkExperimenterGroup again if loaded.
removeGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter
use like removeGroupExperimenterMap
removeGroupExperimenterMapSet(Collection<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup
use like removeGroupExperimenterMap
removeImage(Image) - Method in class ome.model.fs.Fileset
removes a single element from this set and makes the inverse call on ome.model.core.Image
removeImageAnnotationLink(ImageAnnotationLink) - Method in class ome.model.core.Image
removes a single element from this set and makes the inverse call on ome.model.annotations.ImageAnnotationLink
removeImageAnnotationLink(ImageAnnotationLink, boolean) - Method in class ome.model.core.Image
removes the given ImageAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkImage again if loaded.
removeImageAnnotationLinkSet(Collection<ImageAnnotationLink>) - Method in class ome.model.core.Image
use like removeImageAnnotationLink
removeImageSet(Collection<Image>) - Method in class ome.model.fs.Fileset
use like removeImage
removeInstrumentAnnotationLink(InstrumentAnnotationLink) - Method in class ome.model.acquisition.Instrument
removes a single element from this set and makes the inverse call on ome.model.annotations.InstrumentAnnotationLink
removeInstrumentAnnotationLink(InstrumentAnnotationLink, boolean) - Method in class ome.model.acquisition.Instrument
removes the given InstrumentAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkInstrument again if loaded.
removeInstrumentAnnotationLinkSet(Collection<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument
use like removeInstrumentAnnotationLink
removeJobOriginalFileLink(JobOriginalFileLink) - Method in class ome.model.jobs.Job
removes a single element from this set and makes the inverse call on ome.model.jobs.JobOriginalFileLink
removeJobOriginalFileLink(JobOriginalFileLink, boolean) - Method in class ome.model.jobs.Job
removes the given JobOriginalFileLink from originalFileLinks, allowing for recursion -- whether or not the removal will call unlinkJob again if loaded.
removeJobOriginalFileLinkSet(Collection<JobOriginalFileLink>) - Method in class ome.model.jobs.Job
use like removeJobOriginalFileLink
removeLightPathAnnotationLink(LightPathAnnotationLink) - Method in class ome.model.acquisition.LightPath
removes a single element from this set and makes the inverse call on ome.model.annotations.LightPathAnnotationLink
removeLightPathAnnotationLink(LightPathAnnotationLink, boolean) - Method in class ome.model.acquisition.LightPath
removes the given LightPathAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.
removeLightPathAnnotationLinkSet(Collection<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath
use like removeLightPathAnnotationLink
removeLightPathEmissionFilterLink(LightPathEmissionFilterLink) - Method in class ome.model.acquisition.LightPath
removes a single element from this set and makes the inverse call on ome.model.acquisition.LightPathEmissionFilterLink
removeLightPathEmissionFilterLink(LightPathEmissionFilterLink, boolean) - Method in class ome.model.acquisition.LightPath
removes the given LightPathEmissionFilterLink from emissionFilterLink, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.
removeLightPathEmissionFilterLinkSet(Collection<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath
use like removeLightPathEmissionFilterLink
removeLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath
removes a single element from this set and makes the inverse call on ome.model.acquisition.LightPathExcitationFilterLink
removeLightPathExcitationFilterLink(LightPathExcitationFilterLink, boolean) - Method in class ome.model.acquisition.LightPath
removes the given LightPathExcitationFilterLink from excitationFilterLink, allowing for recursion -- whether or not the removal will call unlinkLightPath again if loaded.
removeLightPathExcitationFilterLinkSet(Collection<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath
use like removeLightPathExcitationFilterLink
removeLightSettings(LightSettings) - Method in class ome.model.experiment.MicrobeamManipulation
removes a single element from this set and makes the inverse call on ome.model.acquisition.LightSettings
removeLightSettingsSet(Collection<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation
use like removeLightSettings
removeLightSource(LightSource) - Method in class ome.model.acquisition.Instrument
removes a single element from this set and makes the inverse call on ome.model.acquisition.LightSource
removeLightSourceAnnotationLink(LightSourceAnnotationLink) - Method in class ome.model.acquisition.LightSource
removes a single element from this set and makes the inverse call on ome.model.annotations.LightSourceAnnotationLink
removeLightSourceAnnotationLink(LightSourceAnnotationLink, boolean) - Method in class ome.model.acquisition.LightSource
removes the given LightSourceAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkLightSource again if loaded.
removeLightSourceAnnotationLinkSet(Collection<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource
use like removeLightSourceAnnotationLink
removeLightSourceSet(Collection<LightSource>) - Method in class ome.model.acquisition.Instrument
use like removeLightSource
removeMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.experiment.Experiment
removes a single element from this set and makes the inverse call on ome.model.experiment.MicrobeamManipulation
removeMicrobeamManipulationSet(Collection<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment
use like removeMicrobeamManipulation
removeNamespaceAnnotationLink(NamespaceAnnotationLink) - Method in class ome.model.meta.Namespace
removes a single element from this set and makes the inverse call on ome.model.annotations.NamespaceAnnotationLink
removeNamespaceAnnotationLink(NamespaceAnnotationLink, boolean) - Method in class ome.model.meta.Namespace
removes the given NamespaceAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkNamespace again if loaded.
removeNamespaceAnnotationLinkSet(Collection<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace
use like removeNamespaceAnnotationLink
removeNodeAnnotationLink(NodeAnnotationLink) - Method in class ome.model.meta.Node
removes a single element from this set and makes the inverse call on ome.model.annotations.NodeAnnotationLink
removeNodeAnnotationLink(NodeAnnotationLink, boolean) - Method in class ome.model.meta.Node
removes the given NodeAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkNode again if loaded.
removeNodeAnnotationLinkSet(Collection<NodeAnnotationLink>) - Method in class ome.model.meta.Node
use like removeNodeAnnotationLink
removeObjective(Objective) - Method in class ome.model.acquisition.Instrument
removes a single element from this set and makes the inverse call on ome.model.acquisition.Objective
removeObjectiveAnnotationLink(ObjectiveAnnotationLink) - Method in class ome.model.acquisition.Objective
removes a single element from this set and makes the inverse call on ome.model.annotations.ObjectiveAnnotationLink
removeObjectiveAnnotationLink(ObjectiveAnnotationLink, boolean) - Method in class ome.model.acquisition.Objective
removes the given ObjectiveAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkObjective again if loaded.
removeObjectiveAnnotationLinkSet(Collection<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective
use like removeObjectiveAnnotationLink
removeObjectiveSet(Collection<Objective>) - Method in class ome.model.acquisition.Instrument
use like removeObjective
removeOriginalFileAnnotationLink(OriginalFileAnnotationLink) - Method in class ome.model.core.OriginalFile
removes a single element from this set and makes the inverse call on ome.model.annotations.OriginalFileAnnotationLink
removeOriginalFileAnnotationLink(OriginalFileAnnotationLink, boolean) - Method in class ome.model.core.OriginalFile
removes the given OriginalFileAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkOriginalFile again if loaded.
removeOriginalFileAnnotationLinkSet(Collection<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile
use like removeOriginalFileAnnotationLink
removeOTF(OTF) - Method in class ome.model.acquisition.Instrument
removes a single element from this set and makes the inverse call on ome.model.acquisition.OTF
removeOTFSet(Collection<OTF>) - Method in class ome.model.acquisition.Instrument
use like removeOTF
removePassword(Long) - Method in class ome.util.actions.PostgresSqlAction
 
removePassword(Long) - Method in interface ome.util.SqlAction
 
removePixels(Pixels) - Method in class ome.model.core.Image
removes a single element from this set and makes the inverse call on ome.model.core.Pixels
removePixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.OriginalFile
removes a single element from this set and makes the inverse call on ome.model.core.PixelsOriginalFileMap
removePixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.OriginalFile
removes the given PixelsOriginalFileMap from pixelsFileMaps, allowing for recursion -- whether or not the removal will call unlinkOriginalFile again if loaded.
removePixelsOriginalFileMap(PixelsOriginalFileMap) - Method in class ome.model.core.Pixels
removes a single element from this set and makes the inverse call on ome.model.core.PixelsOriginalFileMap
removePixelsOriginalFileMap(PixelsOriginalFileMap, boolean) - Method in class ome.model.core.Pixels
removes the given PixelsOriginalFileMap from pixelsFileMaps, allowing for recursion -- whether or not the removal will call unlinkPixels again if loaded.
removePixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile
use like removePixelsOriginalFileMap
removePixelsOriginalFileMapSet(Collection<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels
use like removePixelsOriginalFileMap
removePixelsSet(Collection<Pixels>) - Method in class ome.model.core.Image
use like removePixels
removePlaneInfo(PlaneInfo) - Method in class ome.model.core.Pixels
removes a single element from this set and makes the inverse call on ome.model.core.PlaneInfo
removePlaneInfoAnnotationLink(PlaneInfoAnnotationLink) - Method in class ome.model.core.PlaneInfo
removes a single element from this set and makes the inverse call on ome.model.annotations.PlaneInfoAnnotationLink
removePlaneInfoAnnotationLink(PlaneInfoAnnotationLink, boolean) - Method in class ome.model.core.PlaneInfo
removes the given PlaneInfoAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlaneInfo again if loaded.
removePlaneInfoAnnotationLinkSet(Collection<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo
use like removePlaneInfoAnnotationLink
removePlaneInfoSet(Collection<PlaneInfo>) - Method in class ome.model.core.Pixels
use like removePlaneInfo
removePlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.Plate
removes a single element from this set and makes the inverse call on ome.model.screen.PlateAcquisition
removePlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink) - Method in class ome.model.screen.PlateAcquisition
removes a single element from this set and makes the inverse call on ome.model.annotations.PlateAcquisitionAnnotationLink
removePlateAcquisitionAnnotationLink(PlateAcquisitionAnnotationLink, boolean) - Method in class ome.model.screen.PlateAcquisition
removes the given PlateAcquisitionAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlateAcquisition again if loaded.
removePlateAcquisitionAnnotationLinkSet(Collection<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition
use like removePlateAcquisitionAnnotationLink
removePlateAcquisitionSet(Collection<PlateAcquisition>) - Method in class ome.model.screen.Plate
use like removePlateAcquisition
removePlateAnnotationLink(PlateAnnotationLink) - Method in class ome.model.screen.Plate
removes a single element from this set and makes the inverse call on ome.model.annotations.PlateAnnotationLink
removePlateAnnotationLink(PlateAnnotationLink, boolean) - Method in class ome.model.screen.Plate
removes the given PlateAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.
removePlateAnnotationLinkSet(Collection<PlateAnnotationLink>) - Method in class ome.model.screen.Plate
use like removePlateAnnotationLink
removeProjectAnnotationLink(ProjectAnnotationLink) - Method in class ome.model.containers.Project
removes a single element from this set and makes the inverse call on ome.model.annotations.ProjectAnnotationLink
removeProjectAnnotationLink(ProjectAnnotationLink, boolean) - Method in class ome.model.containers.Project
removes the given ProjectAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkProject again if loaded.
removeProjectAnnotationLinkSet(Collection<ProjectAnnotationLink>) - Method in class ome.model.containers.Project
use like removeProjectAnnotationLink
removeProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Dataset
removes a single element from this set and makes the inverse call on ome.model.containers.ProjectDatasetLink
removeProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Dataset
removes the given ProjectDatasetLink from projectLinks, allowing for recursion -- whether or not the removal will call unlinkDataset again if loaded.
removeProjectDatasetLink(ProjectDatasetLink) - Method in class ome.model.containers.Project
removes a single element from this set and makes the inverse call on ome.model.containers.ProjectDatasetLink
removeProjectDatasetLink(ProjectDatasetLink, boolean) - Method in class ome.model.containers.Project
removes the given ProjectDatasetLink from datasetLinks, allowing for recursion -- whether or not the removal will call unlinkProject again if loaded.
removeProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset
use like removeProjectDatasetLink
removeProjectDatasetLinkSet(Collection<ProjectDatasetLink>) - Method in class ome.model.containers.Project
use like removeProjectDatasetLink
removeProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef
removes a single element from this set and makes the inverse call on ome.model.display.ProjectionDef
removeProjectionDefSet(Collection<ProjectionDef>) - Method in class ome.model.display.RenderingDef
use like removeProjectionDef
removeReagent(Reagent) - Method in class ome.model.screen.Screen
removes a single element from this set and makes the inverse call on ome.model.screen.Reagent
removeReagentAnnotationLink(ReagentAnnotationLink) - Method in class ome.model.screen.Reagent
removes a single element from this set and makes the inverse call on ome.model.annotations.ReagentAnnotationLink
removeReagentAnnotationLink(ReagentAnnotationLink, boolean) - Method in class ome.model.screen.Reagent
removes the given ReagentAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkReagent again if loaded.
removeReagentAnnotationLinkSet(Collection<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent
use like removeReagentAnnotationLink
removeReagentSet(Collection<Reagent>) - Method in class ome.model.screen.Screen
use like removeReagent
removeRenderingDef(RenderingDef) - Method in class ome.model.core.Pixels
removes a single element from this set and makes the inverse call on ome.model.display.RenderingDef
removeRenderingDefSet(Collection<RenderingDef>) - Method in class ome.model.core.Pixels
use like removeRenderingDef
removeRoi(Roi) - Method in class ome.model.core.Image
removes a single element from this set and makes the inverse call on ome.model.roi.Roi
removeRoiAnnotationLink(RoiAnnotationLink) - Method in class ome.model.roi.Roi
removes a single element from this set and makes the inverse call on ome.model.annotations.RoiAnnotationLink
removeRoiAnnotationLink(RoiAnnotationLink, boolean) - Method in class ome.model.roi.Roi
removes the given RoiAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkRoi again if loaded.
removeRoiAnnotationLinkSet(Collection<RoiAnnotationLink>) - Method in class ome.model.roi.Roi
use like removeRoiAnnotationLink
removeRoiSet(Collection<Roi>) - Method in class ome.model.core.Image
use like removeRoi
removeScreenAnnotationLink(ScreenAnnotationLink) - Method in class ome.model.screen.Screen
removes a single element from this set and makes the inverse call on ome.model.annotations.ScreenAnnotationLink
removeScreenAnnotationLink(ScreenAnnotationLink, boolean) - Method in class ome.model.screen.Screen
removes the given ScreenAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkScreen again if loaded.
removeScreenAnnotationLinkSet(Collection<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen
use like removeScreenAnnotationLink
removeScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Plate
removes a single element from this set and makes the inverse call on ome.model.screen.ScreenPlateLink
removeScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Plate
removes the given ScreenPlateLink from screenLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.
removeScreenPlateLink(ScreenPlateLink) - Method in class ome.model.screen.Screen
removes a single element from this set and makes the inverse call on ome.model.screen.ScreenPlateLink
removeScreenPlateLink(ScreenPlateLink, boolean) - Method in class ome.model.screen.Screen
removes the given ScreenPlateLink from plateLinks, allowing for recursion -- whether or not the removal will call unlinkScreen again if loaded.
removeScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Plate
use like removeScreenPlateLink
removeScreenPlateLinkSet(Collection<ScreenPlateLink>) - Method in class ome.model.screen.Screen
use like removeScreenPlateLink
removeSession(Session) - Method in class ome.model.meta.Node
removes a single element from this set and makes the inverse call on ome.model.meta.Session
removeSessionAnnotationLink(SessionAnnotationLink) - Method in class ome.model.meta.Session
removes a single element from this set and makes the inverse call on ome.model.annotations.SessionAnnotationLink
removeSessionAnnotationLink(SessionAnnotationLink, boolean) - Method in class ome.model.meta.Session
removes the given SessionAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkSession again if loaded.
removeSessionAnnotationLinkSet(Collection<SessionAnnotationLink>) - Method in class ome.model.meta.Session
use like removeSessionAnnotationLink
removeSessionSet(Collection<Session>) - Method in class ome.model.meta.Node
use like removeSession
removeShape(Shape) - Method in class ome.model.roi.Roi
removes a single element from this set and makes the inverse call on ome.model.roi.Shape
removeShapeAnnotationLink(ShapeAnnotationLink) - Method in class ome.model.roi.Shape
removes a single element from this set and makes the inverse call on ome.model.annotations.ShapeAnnotationLink
removeShapeAnnotationLink(ShapeAnnotationLink, boolean) - Method in class ome.model.roi.Shape
removes the given ShapeAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkShape again if loaded.
removeShapeAnnotationLinkSet(Collection<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape
use like removeShapeAnnotationLink
removeShapeSet(Collection<Shape>) - Method in class ome.model.roi.Roi
use like removeShape
removeThumbnail(Thumbnail) - Method in class ome.model.core.Pixels
removes a single element from this set and makes the inverse call on ome.model.display.Thumbnail
removeThumbnailSet(Collection<Thumbnail>) - Method in class ome.model.core.Pixels
use like removeThumbnail
removeWell(Well) - Method in class ome.model.screen.Plate
removes a single element from this set and makes the inverse call on ome.model.screen.Well
removeWellAnnotationLink(WellAnnotationLink) - Method in class ome.model.screen.Well
removes a single element from this set and makes the inverse call on ome.model.annotations.WellAnnotationLink
removeWellAnnotationLink(WellAnnotationLink, boolean) - Method in class ome.model.screen.Well
removes the given WellAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkWell again if loaded.
removeWellAnnotationLinkSet(Collection<WellAnnotationLink>) - Method in class ome.model.screen.Well
use like removeWellAnnotationLink
removeWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Reagent
removes a single element from this set and makes the inverse call on ome.model.screen.WellReagentLink
removeWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Reagent
removes the given WellReagentLink from wellLinks, allowing for recursion -- whether or not the removal will call unlinkReagent again if loaded.
removeWellReagentLink(WellReagentLink) - Method in class ome.model.screen.Well
removes a single element from this set and makes the inverse call on ome.model.screen.WellReagentLink
removeWellReagentLink(WellReagentLink, boolean) - Method in class ome.model.screen.Well
removes the given WellReagentLink from reagentLinks, allowing for recursion -- whether or not the removal will call unlinkWell again if loaded.
removeWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Reagent
use like removeWellReagentLink
removeWellReagentLinkSet(Collection<WellReagentLink>) - Method in class ome.model.screen.Well
use like removeWellReagentLink
removeWellSample(WellSample) - Method in class ome.model.core.Image
removes a single element from this set and makes the inverse call on ome.model.screen.WellSample
removeWellSample(WellSample) - Method in class ome.model.screen.PlateAcquisition
removes a single element from this set and makes the inverse call on ome.model.screen.WellSample
removeWellSample(WellSample) - Method in class ome.model.screen.Well
removes a single element from this set and makes the inverse call on ome.model.screen.WellSample
removeWellSampleSet(Collection<WellSample>) - Method in class ome.model.core.Image
use like removeWellSample
removeWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.PlateAcquisition
use like removeWellSample
removeWellSampleSet(Collection<WellSample>) - Method in class ome.model.screen.Well
use like removeWellSample
removeWellSet(Collection<Well>) - Method in class ome.model.screen.Plate
use like removeWell
renderingDef - Variable in class ome.model.display.ChannelBinding
 
RENDERINGDEF - Static variable in class ome.model.display.ChannelBinding
 
renderingDef - Variable in class ome.model.display.ProjectionDef
 
RENDERINGDEF - Static variable in class ome.model.display.ProjectionDef
 
RenderingDef - Class in ome.model.display
These filter definitions are used by the security system to eliminate non-readable objects from queries.
RenderingDef() - Constructor for class ome.model.display.RenderingDef
 
RenderingDef(Long) - Constructor for class ome.model.display.RenderingDef
 
RenderingDef(Long, boolean) - Constructor for class ome.model.display.RenderingDef
Main constructor.
RenderingDef(Pixels, Integer, Integer, RenderingModel, QuantumDef) - Constructor for class ome.model.display.RenderingDef
 
RenderingDef.Details - Class in ome.model.display
 
RenderingModel - Class in ome.model.enums
 
RenderingModel() - Constructor for class ome.model.enums.RenderingModel
 
RenderingModel(Long) - Constructor for class ome.model.enums.RenderingModel
 
RenderingModel(Long, boolean) - Constructor for class ome.model.enums.RenderingModel
Main constructor.
RenderingModel(String) - Constructor for class ome.model.enums.RenderingModel
 
RenderingModel.Details - Class in ome.model.enums
 
repetitionRate - Variable in class ome.model.acquisition.Laser
 
REPETITIONRATE - Static variable in class ome.model.acquisition.Laser
 
replace(Object, Object, Object) - Method in class ome.model.units.GenericEnumType
 
repo - Variable in class ome.model.core.OriginalFile
 
REPO - Static variable in class ome.model.core.OriginalFile
 
repo - Variable in class ome.util.SqlAction.DeleteLog
 
repoFile(long) - Method in class ome.util.actions.PostgresSqlAction
 
repoFile(long) - Method in interface ome.util.SqlAction
 
repoScriptCount(String, Set<String>) - Method in class ome.util.SqlAction.Impl
 
repoScriptCount(String, Set<String>) - Method in interface ome.util.SqlAction
 
reset() - Method in class ome.util.Counter
Reset this counter to zero.
ResourceError - Exception in ome.conditions
Represents a incorrectible/unforseeable event within the server that lead to a failure of a process.
ResourceError(String) - Constructor for exception ome.conditions.ResourceError
 
result - Variable in exception ome.model.units.BigResult
 
retrieve(String) - Method in class ome.model.acquisition.Arc
 
retrieve(String) - Method in class ome.model.acquisition.Detector
 
retrieve(String) - Method in class ome.model.acquisition.DetectorSettings
 
retrieve(String) - Method in class ome.model.acquisition.Dichroic
 
retrieve(String) - Method in class ome.model.acquisition.Filament
 
retrieve(String) - Method in class ome.model.acquisition.Filter
 
retrieve(String) - Method in class ome.model.acquisition.FilterSet
 
retrieve(String) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
retrieve(String) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
retrieve(String) - Method in class ome.model.acquisition.GenericExcitationSource
 
retrieve(String) - Method in class ome.model.acquisition.ImagingEnvironment
 
retrieve(String) - Method in class ome.model.acquisition.Instrument
 
retrieve(String) - Method in class ome.model.acquisition.Laser
 
retrieve(String) - Method in class ome.model.acquisition.LightEmittingDiode
 
retrieve(String) - Method in class ome.model.acquisition.LightPath
 
retrieve(String) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
retrieve(String) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
retrieve(String) - Method in class ome.model.acquisition.LightSettings
 
retrieve(String) - Method in class ome.model.acquisition.LightSource
 
retrieve(String) - Method in class ome.model.acquisition.Microscope
 
retrieve(String) - Method in class ome.model.acquisition.Objective
 
retrieve(String) - Method in class ome.model.acquisition.ObjectiveSettings
 
retrieve(String) - Method in class ome.model.acquisition.OTF
 
retrieve(String) - Method in class ome.model.acquisition.StageLabel
 
retrieve(String) - Method in class ome.model.acquisition.TransmittanceRange
 
retrieve(String) - Method in class ome.model.annotations.Annotation
 
retrieve(String) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.BasicAnnotation
 
retrieve(String) - Method in class ome.model.annotations.BooleanAnnotation
 
retrieve(String) - Method in class ome.model.annotations.ChannelAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.CommentAnnotation
 
retrieve(String) - Method in class ome.model.annotations.DatasetAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.DetectorAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.DichroicAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.DoubleAnnotation
 
retrieve(String) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.FileAnnotation
 
retrieve(String) - Method in class ome.model.annotations.FilesetAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.FilterAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.FolderAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.ImageAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.LightPathAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.ListAnnotation
 
retrieve(String) - Method in class ome.model.annotations.LongAnnotation
 
retrieve(String) - Method in class ome.model.annotations.MapAnnotation
 
retrieve(String) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.NodeAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.NumericAnnotation
 
retrieve(String) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.PlateAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.ProjectAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.ReagentAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.RoiAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.ScreenAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.SessionAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.ShapeAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.TagAnnotation
 
retrieve(String) - Method in class ome.model.annotations.TermAnnotation
 
retrieve(String) - Method in class ome.model.annotations.TextAnnotation
 
retrieve(String) - Method in class ome.model.annotations.TimestampAnnotation
 
retrieve(String) - Method in class ome.model.annotations.TypeAnnotation
 
retrieve(String) - Method in class ome.model.annotations.WellAnnotationLink
 
retrieve(String) - Method in class ome.model.annotations.XmlAnnotation
 
retrieve(String) - Method in class ome.model.containers.Dataset
 
retrieve(String) - Method in class ome.model.containers.DatasetImageLink
 
retrieve(String) - Method in class ome.model.containers.Folder
 
retrieve(String) - Method in class ome.model.containers.FolderImageLink
 
retrieve(String) - Method in class ome.model.containers.FolderRoiLink
 
retrieve(String) - Method in class ome.model.containers.Project
 
retrieve(String) - Method in class ome.model.containers.ProjectDatasetLink
 
retrieve(String) - Method in class ome.model.core.Channel
 
retrieve(String) - Method in class ome.model.core.Image
 
retrieve(String) - Method in class ome.model.core.LogicalChannel
 
retrieve(String) - Method in class ome.model.core.OriginalFile
 
retrieve(String) - Method in class ome.model.core.Pixels
 
retrieve(String) - Method in class ome.model.core.PixelsOriginalFileMap
 
retrieve(String) - Method in class ome.model.core.PlaneInfo
 
retrieve(String) - Method in class ome.model.display.ChannelBinding
 
retrieve(String) - Method in class ome.model.display.CodomainMapContext
 
retrieve(String) - Method in class ome.model.display.ContrastStretchingContext
 
retrieve(String) - Method in class ome.model.display.PlaneSlicingContext
 
retrieve(String) - Method in class ome.model.display.ProjectionDef
 
retrieve(String) - Method in class ome.model.display.QuantumDef
 
retrieve(String) - Method in class ome.model.display.RenderingDef
 
retrieve(String) - Method in class ome.model.display.ReverseIntensityContext
 
retrieve(String) - Method in class ome.model.display.Thumbnail
 
retrieve(String) - Method in class ome.model.enums.AcquisitionMode
 
retrieve(String) - Method in class ome.model.enums.AdminPrivilege
 
retrieve(String) - Method in class ome.model.enums.ArcType
 
retrieve(String) - Method in class ome.model.enums.Binning
 
retrieve(String) - Method in class ome.model.enums.ChecksumAlgorithm
 
retrieve(String) - Method in class ome.model.enums.ContrastMethod
 
retrieve(String) - Method in class ome.model.enums.Correction
 
retrieve(String) - Method in class ome.model.enums.DetectorType
 
retrieve(String) - Method in class ome.model.enums.DimensionOrder
 
retrieve(String) - Method in class ome.model.enums.EventType
 
retrieve(String) - Method in class ome.model.enums.ExperimentType
 
retrieve(String) - Method in class ome.model.enums.Family
 
retrieve(String) - Method in class ome.model.enums.FilamentType
 
retrieve(String) - Method in class ome.model.enums.FilterType
 
retrieve(String) - Method in class ome.model.enums.Format
 
retrieve(String) - Method in class ome.model.enums.Illumination
 
retrieve(String) - Method in class ome.model.enums.Immersion
 
retrieve(String) - Method in class ome.model.enums.LaserMedium
 
retrieve(String) - Method in class ome.model.enums.LaserType
 
retrieve(String) - Method in class ome.model.enums.Medium
 
retrieve(String) - Method in class ome.model.enums.MicrobeamManipulationType
 
retrieve(String) - Method in class ome.model.enums.MicroscopeType
 
retrieve(String) - Method in class ome.model.enums.PhotometricInterpretation
 
retrieve(String) - Method in class ome.model.enums.PixelsType
 
retrieve(String) - Method in class ome.model.enums.ProjectionAxis
 
retrieve(String) - Method in class ome.model.enums.ProjectionType
 
retrieve(String) - Method in class ome.model.enums.Pulse
 
retrieve(String) - Method in class ome.model.enums.RenderingModel
 
retrieve(String) - Method in class ome.model.experiment.Experiment
 
retrieve(String) - Method in class ome.model.experiment.MicrobeamManipulation
 
retrieve(String) - Method in class ome.model.fs.Fileset
 
retrieve(String) - Method in class ome.model.fs.FilesetEntry
 
retrieve(String) - Method in class ome.model.fs.FilesetJobLink
 
retrieve(String) - Method in class ome.model.internal.Details
 
retrieve(String) - Method in class ome.model.internal.Link
 
retrieve(String) - Method in interface ome.model.IObject
retrieves a value from this instance.
retrieve(String) - Method in class ome.model.jobs.ImportJob
Deprecated.
 
retrieve(String) - Method in class ome.model.jobs.IndexingJob
 
retrieve(String) - Method in class ome.model.jobs.IntegrityCheckJob
 
retrieve(String) - Method in class ome.model.jobs.Job
 
retrieve(String) - Method in class ome.model.jobs.JobOriginalFileLink
 
retrieve(String) - Method in class ome.model.jobs.JobStatus
 
retrieve(String) - Method in class ome.model.jobs.MetadataImportJob
 
retrieve(String) - Method in class ome.model.jobs.ParseJob
 
retrieve(String) - Method in class ome.model.jobs.PixelDataJob
 
retrieve(String) - Method in class ome.model.jobs.ScriptJob
 
retrieve(String) - Method in class ome.model.jobs.ThumbnailGenerationJob
 
retrieve(String) - Method in class ome.model.jobs.UploadJob
 
retrieve(String) - Method in class ome.model.meta.DBPatch
 
retrieve(String) - Method in class ome.model.meta.Event
 
retrieve(String) - Method in class ome.model.meta.EventLog
 
retrieve(String) - Method in class ome.model.meta.Experimenter
 
retrieve(String) - Method in class ome.model.meta.ExperimenterGroup
 
retrieve(String) - Method in class ome.model.meta.ExternalInfo
 
retrieve(String) - Method in class ome.model.meta.GroupExperimenterMap
 
retrieve(String) - Method in class ome.model.meta.Namespace
 
retrieve(String) - Method in class ome.model.meta.Node
 
retrieve(String) - Method in class ome.model.meta.Session
 
retrieve(String) - Method in class ome.model.meta.Share
 
retrieve(String) - Method in class ome.model.meta.ShareMember
 
retrieve(String) - Method in class ome.model.roi.AffineTransform
 
retrieve(String) - Method in class ome.model.roi.Ellipse
 
retrieve(String) - Method in class ome.model.roi.Label
 
retrieve(String) - Method in class ome.model.roi.Line
 
retrieve(String) - Method in class ome.model.roi.Mask
 
retrieve(String) - Method in class ome.model.roi.Path
Deprecated.
 
retrieve(String) - Method in class ome.model.roi.Point
 
retrieve(String) - Method in class ome.model.roi.Polygon
 
retrieve(String) - Method in class ome.model.roi.Polyline
 
retrieve(String) - Method in class ome.model.roi.Rectangle
 
retrieve(String) - Method in class ome.model.roi.Roi
 
retrieve(String) - Method in class ome.model.roi.Shape
 
retrieve(String) - Method in class ome.model.screen.Plate
 
retrieve(String) - Method in class ome.model.screen.PlateAcquisition
 
retrieve(String) - Method in class ome.model.screen.Reagent
 
retrieve(String) - Method in class ome.model.screen.Screen
 
retrieve(String) - Method in class ome.model.screen.ScreenPlateLink
 
retrieve(String) - Method in class ome.model.screen.Well
 
retrieve(String) - Method in class ome.model.screen.WellReagentLink
 
retrieve(String) - Method in class ome.model.screen.WellSample
 
retrieve(String) - Method in class ome.model.stats.StatsInfo
 
retrieve(String) - Method in class ome.util.PermDetails
 
returnedClass() - Method in class ome.model.units.GenericEnumType
 
reverse - Variable in class ome.model.display.ReverseIntensityContext
 
REVERSE - Static variable in class ome.model.display.ReverseIntensityContext
 
reverse(ModelBased) - Method in interface ome.util.ReverseModelMapper
 
reverse(Collection) - Method in interface ome.util.ReverseModelMapper
 
ReverseIntensityContext - Class in ome.model.display
 
ReverseIntensityContext() - Constructor for class ome.model.display.ReverseIntensityContext
 
ReverseIntensityContext(Long) - Constructor for class ome.model.display.ReverseIntensityContext
 
ReverseIntensityContext(Long, boolean) - Constructor for class ome.model.display.ReverseIntensityContext
Main constructor.
ReverseIntensityContext(Boolean) - Constructor for class ome.model.display.ReverseIntensityContext
 
ReverseModelMapper - Interface in ome.util
 
revoke(Permissions.Role, Permissions.Right...) - Method in class ome.model.internal.Permissions
turns off the rights for the given role.
revokeAll(Permissions) - Method in class ome.model.internal.Permissions
takes a permissions instance and ANDs it with the current instance.
rewriteHql(String, String, Object) - Method in class ome.util.actions.PostgresSqlAction
The temp_ids infrastructure was never properly put in place for the "psql" profile.
rewriteHql(String, String, Object) - Method in class ome.util.SqlAction.Impl
 
rewriteHql(String, String, Object) - Method in interface ome.util.SqlAction
Allows the specific database implementations a chance to modify queries.
Roi - Class in ome.model.roi
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Roi() - Constructor for class ome.model.roi.Roi
 
Roi(Long) - Constructor for class ome.model.roi.Roi
 
Roi(Long, boolean) - Constructor for class ome.model.roi.Roi
Main constructor.
roi - Variable in class ome.model.roi.Shape
 
ROI - Static variable in class ome.model.roi.Shape
 
Roi.Details - Class in ome.model.roi
 
RoiAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
RoiAnnotationLink() - Constructor for class ome.model.annotations.RoiAnnotationLink
 
RoiAnnotationLink(Long) - Constructor for class ome.model.annotations.RoiAnnotationLink
 
RoiAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.RoiAnnotationLink
Main constructor.
RoiAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.RoiAnnotationLink
 
RoiAnnotationLink.Details - Class in ome.model.annotations
 
roiByImage(long) - Method in class ome.util.actions.PostgresSqlAction
 
roiByImage(long) - Method in interface ome.util.SqlAction
 
roiLinks - Variable in class ome.model.containers.Folder
 
ROILINKS - Static variable in class ome.model.containers.Folder
 
ROILINKSCOUNTPEROWNER - Static variable in class ome.model.containers.Folder
 
rois - Variable in class ome.model.core.Image
 
ROIS - Static variable in class ome.model.core.Image
 
rollbackSavepoint(String) - Method in class ome.util.actions.PostgresSqlAction
 
rollbackSavepoint(String) - Method in interface ome.util.SqlAction
 
RootException - Exception in ome.conditions
abstract superclass of all Omero exceptions.
RootException(String) - Constructor for exception ome.conditions.RootException
 
row - Variable in class ome.model.screen.Well
 
ROW - Static variable in class ome.model.screen.Well
 
rowNamingConvention - Variable in class ome.model.screen.Plate
 
ROWNAMINGCONVENTION - Static variable in class ome.model.screen.Plate
 
rows - Variable in class ome.model.screen.Plate
 
ROWS - Static variable in class ome.model.screen.Plate
 

S

sameRights(Permissions) - Method in class ome.model.internal.Permissions
returns true if two Permissions instances have all the same Permissions.Right / Permissions.Role pairs granted.
samplesPerPixel - Variable in class ome.model.core.LogicalChannel
 
SAMPLESPERPIXEL - Static variable in class ome.model.core.LogicalChannel
 
scale - Variable in class ome.model.meta.Node
 
SCALE - Static variable in class ome.model.meta.Node
 
scheduledFor - Variable in class ome.model.jobs.Job
 
SCHEDULEDFOR - Static variable in class ome.model.jobs.Job
 
screen - Variable in class ome.model.screen.Reagent
 
SCREEN - Static variable in class ome.model.screen.Reagent
 
Screen - Class in ome.model.screen
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Screen() - Constructor for class ome.model.screen.Screen
 
Screen(Long) - Constructor for class ome.model.screen.Screen
 
Screen(Long, boolean) - Constructor for class ome.model.screen.Screen
Main constructor.
Screen(String) - Constructor for class ome.model.screen.Screen
 
Screen.Details - Class in ome.model.screen
 
ScreenAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ScreenAnnotationLink() - Constructor for class ome.model.annotations.ScreenAnnotationLink
 
ScreenAnnotationLink(Long) - Constructor for class ome.model.annotations.ScreenAnnotationLink
 
ScreenAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ScreenAnnotationLink
Main constructor.
ScreenAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ScreenAnnotationLink
 
ScreenAnnotationLink.Details - Class in ome.model.annotations
 
screenLinks - Variable in class ome.model.screen.Plate
 
SCREENLINKS - Static variable in class ome.model.screen.Plate
 
SCREENLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Plate
 
ScreenPlateLink - Class in ome.model.screen
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ScreenPlateLink() - Constructor for class ome.model.screen.ScreenPlateLink
 
ScreenPlateLink(Long) - Constructor for class ome.model.screen.ScreenPlateLink
 
ScreenPlateLink(Long, boolean) - Constructor for class ome.model.screen.ScreenPlateLink
Main constructor.
ScreenPlateLink(IObject, IObject) - Constructor for class ome.model.screen.ScreenPlateLink
 
ScreenPlateLink.Details - Class in ome.model.screen
 
ScriptJob - Class in ome.model.jobs
 
ScriptJob() - Constructor for class ome.model.jobs.ScriptJob
 
ScriptJob(Long) - Constructor for class ome.model.jobs.ScriptJob
 
ScriptJob(Long, boolean) - Constructor for class ome.model.jobs.ScriptJob
Main constructor.
scriptRepo(long, Set<String>) - Method in class ome.util.SqlAction.Impl
 
scriptRepo(long, Set<String>) - Method in interface ome.util.SqlAction
Similar to SqlAction.fileRepo(long), but only returns values for files which are also scripts.
seconds - Variable in exception ome.conditions.LockTimeout
Informational field on number of seconds that the lock was tried for.
SecurityViolation - Exception in ome.conditions
User does not have permissions to perform given action.
SecurityViolation(String) - Constructor for exception ome.conditions.SecurityViolation
 
selectCurrentEventLog(String) - Method in class ome.util.actions.PostgresSqlAction
 
selectCurrentEventLog(String) - Method in class ome.util.SqlAction.Impl
 
selectCurrentEventLog(String) - Method in interface ome.util.SqlAction
 
serialNumber - Variable in class ome.model.acquisition.Detector
 
SERIALNUMBER - Static variable in class ome.model.acquisition.Detector
 
serialNumber - Variable in class ome.model.acquisition.Dichroic
 
SERIALNUMBER - Static variable in class ome.model.acquisition.Dichroic
 
serialNumber - Variable in class ome.model.acquisition.Filter
 
SERIALNUMBER - Static variable in class ome.model.acquisition.Filter
 
serialNumber - Variable in class ome.model.acquisition.FilterSet
 
SERIALNUMBER - Static variable in class ome.model.acquisition.FilterSet
 
serialNumber - Variable in class ome.model.acquisition.LightSource
 
SERIALNUMBER - Static variable in class ome.model.acquisition.LightSource
 
serialNumber - Variable in class ome.model.acquisition.Microscope
 
SERIALNUMBER - Static variable in class ome.model.acquisition.Microscope
 
serialNumber - Variable in class ome.model.acquisition.Objective
 
SERIALNUMBER - Static variable in class ome.model.acquisition.Objective
 
series - Variable in class ome.model.core.Image
 
SERIES - Static variable in class ome.model.core.Image
 
session - Variable in class ome.model.meta.Event
 
SESSION - Static variable in class ome.model.meta.Event
 
Session - Class in ome.model.meta
 
Session() - Constructor for class ome.model.meta.Session
 
Session(Long) - Constructor for class ome.model.meta.Session
 
Session(Long, boolean) - Constructor for class ome.model.meta.Session
Main constructor.
Session(Node, String, Experimenter, Long, Long, Timestamp, String) - Constructor for class ome.model.meta.Session
 
Session.Details - Class in ome.model.meta
 
SessionAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
SessionAnnotationLink() - Constructor for class ome.model.annotations.SessionAnnotationLink
 
SessionAnnotationLink(Long) - Constructor for class ome.model.annotations.SessionAnnotationLink
 
SessionAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.SessionAnnotationLink
Main constructor.
SessionAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.SessionAnnotationLink
 
SessionAnnotationLink.Details - Class in ome.model.annotations
 
sessionContext - Variable in exception ome.conditions.SessionTimeoutException
 
SessionException - Exception in ome.conditions
Base session related exception.
SessionException(String) - Constructor for exception ome.conditions.SessionException
 
sessionId(String) - Method in class ome.util.actions.PostgresSqlAction
 
sessionId(String) - Method in interface ome.util.SqlAction
 
sessions - Variable in class ome.model.meta.Node
 
SESSIONS - Static variable in class ome.model.meta.Node
 
SessionTimeoutException - Exception in ome.conditions
The given session has expired and can no longer be used.
SessionTimeoutException(String, Object) - Constructor for exception ome.conditions.SessionTimeoutException
 
set(Permissions.Flag) - Method in class ome.model.internal.Permissions
turn a given Permissions.Flag on.
set(String, Object, Document, LuceneOptions) - Method in class ome.util.DetailsFieldBridge
 
setA00(Double) - Method in class ome.model.roi.AffineTransform
 
setA01(Double) - Method in class ome.model.roi.AffineTransform
 
setA02(Double) - Method in class ome.model.roi.AffineTransform
 
setA10(Double) - Method in class ome.model.roi.AffineTransform
 
setA11(Double) - Method in class ome.model.roi.AffineTransform
 
setA12(Double) - Method in class ome.model.roi.AffineTransform
 
setAcquisitionDate(Timestamp) - Method in class ome.model.core.Image
 
setAction(String) - Method in class ome.model.meta.EventLog
 
setActive(Boolean) - Method in class ome.model.display.ChannelBinding
 
setActive(Boolean) - Method in class ome.model.display.ProjectionDef
 
setActive(Boolean) - Method in class ome.model.meta.Share
 
setAirPressure(Pressure) - Method in class ome.model.acquisition.ImagingEnvironment
 
setAlpha(Integer) - Method in class ome.model.core.Channel
 
setAlpha(Integer) - Method in class ome.model.display.ChannelBinding
 
setAlpha(Integer) - Method in class ome.model.screen.Well
 
setAmplificationGain(Double) - Method in class ome.model.acquisition.Detector
 
setAnnotationLinks(Set<DetectorAnnotationLink>) - Method in class ome.model.acquisition.Detector
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<DichroicAnnotationLink>) - Method in class ome.model.acquisition.Dichroic
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<FilterAnnotationLink>) - Method in class ome.model.acquisition.Filter
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<InstrumentAnnotationLink>) - Method in class ome.model.acquisition.Instrument
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<LightPathAnnotationLink>) - Method in class ome.model.acquisition.LightPath
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<LightSourceAnnotationLink>) - Method in class ome.model.acquisition.LightSource
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ObjectiveAnnotationLink>) - Method in class ome.model.acquisition.Objective
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<AnnotationAnnotationLink>) - Method in class ome.model.annotations.Annotation
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<DatasetAnnotationLink>) - Method in class ome.model.containers.Dataset
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<FolderAnnotationLink>) - Method in class ome.model.containers.Folder
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ProjectAnnotationLink>) - Method in class ome.model.containers.Project
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ChannelAnnotationLink>) - Method in class ome.model.core.Channel
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ImageAnnotationLink>) - Method in class ome.model.core.Image
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<OriginalFileAnnotationLink>) - Method in class ome.model.core.OriginalFile
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<PlaneInfoAnnotationLink>) - Method in class ome.model.core.PlaneInfo
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<FilesetAnnotationLink>) - Method in class ome.model.fs.Fileset
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ExperimenterAnnotationLink>) - Method in class ome.model.meta.Experimenter
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ExperimenterGroupAnnotationLink>) - Method in class ome.model.meta.ExperimenterGroup
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<NamespaceAnnotationLink>) - Method in class ome.model.meta.Namespace
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<NodeAnnotationLink>) - Method in class ome.model.meta.Node
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<SessionAnnotationLink>) - Method in class ome.model.meta.Session
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<RoiAnnotationLink>) - Method in class ome.model.roi.Roi
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ShapeAnnotationLink>) - Method in class ome.model.roi.Shape
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<PlateAnnotationLink>) - Method in class ome.model.screen.Plate
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<PlateAcquisitionAnnotationLink>) - Method in class ome.model.screen.PlateAcquisition
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ReagentAnnotationLink>) - Method in class ome.model.screen.Reagent
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<ScreenAnnotationLink>) - Method in class ome.model.screen.Screen
setter for annotationLinks should be avoided.
setAnnotationLinks(Set<WellAnnotationLink>) - Method in class ome.model.screen.Well
setter for annotationLinks should be avoided.
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Detector
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Dichroic
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Filter
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Instrument
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightPath
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightSource
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Objective
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.annotations.Annotation
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Dataset
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Folder
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Project
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Channel
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Image
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.OriginalFile
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.PlaneInfo
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.fs.Fileset
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Experimenter
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.ExperimenterGroup
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Namespace
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Node
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.meta.Session
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.roi.Roi
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.roi.Shape
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Plate
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.PlateAcquisition
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Reagent
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Screen
 
setAnnotationLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Well
 
setArchived(Boolean) - Method in class ome.model.core.Image
 
setAtime(Timestamp) - Method in class ome.model.core.OriginalFile
 
setAttenuation(Double) - Method in class ome.model.acquisition.LightSettings
 
setAxis(ProjectionAxis) - Method in class ome.model.display.ProjectionDef
 
setBinning(Binning) - Method in class ome.model.acquisition.DetectorSettings
 
setBitResolution(Integer) - Method in class ome.model.display.QuantumDef
 
setBitSize(Integer) - Method in class ome.model.enums.PixelsType
 
setBlue(Integer) - Method in class ome.model.core.Channel
 
setBlue(Integer) - Method in class ome.model.display.ChannelBinding
 
setBlue(Integer) - Method in class ome.model.screen.Well
 
setBoolValue(Boolean) - Method in class ome.model.annotations.BooleanAnnotation
 
setBytes(byte[]) - Method in class ome.model.roi.Mask
 
setCalibratedMagnification(Double) - Method in class ome.model.acquisition.Objective
 
setCdEnd(Integer) - Method in class ome.model.display.QuantumDef
 
setCdStart(Integer) - Method in class ome.model.display.QuantumDef
 
setChannel(int, Channel) - Method in class ome.model.core.Pixels
Sets the ome.model.core.Channel at the given index.
setChannelBinding(ChannelBinding) - Method in class ome.model.display.CodomainMapContext
 
setChannelBinding(int, ChannelBinding) - Method in class ome.model.display.RenderingDef
Sets the ome.model.display.ChannelBinding at the given index.
setChannels(Set<Channel>) - Method in class ome.model.core.LogicalChannel
setter for channels should be avoided.
setChannels(List<Channel>) - Method in class ome.model.core.Pixels
setter for channels should be avoided.
setChild(IObject) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
setChild(IObject) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
setChild(IObject) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
setChild(IObject) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
setChild(IObject) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.ChannelAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.DatasetAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.DetectorAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.DichroicAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.FilesetAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.FilterAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.FolderAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.ImageAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.LightPathAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.NodeAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.PlateAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.ProjectAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.ReagentAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.RoiAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.ScreenAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.SessionAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.ShapeAnnotationLink
 
setChild(IObject) - Method in class ome.model.annotations.WellAnnotationLink
 
setChild(IObject) - Method in class ome.model.containers.DatasetImageLink
 
setChild(IObject) - Method in class ome.model.containers.FolderImageLink
 
setChild(IObject) - Method in class ome.model.containers.FolderRoiLink
 
setChild(IObject) - Method in class ome.model.containers.ProjectDatasetLink
 
setChild(IObject) - Method in class ome.model.core.PixelsOriginalFileMap
 
setChild(IObject) - Method in class ome.model.fs.FilesetJobLink
 
setChild(IObject) - Method in interface ome.model.ILink
 
setChild(IObject) - Method in class ome.model.jobs.JobOriginalFileLink
 
setChild(IObject) - Method in class ome.model.meta.GroupExperimenterMap
 
setChild(IObject) - Method in class ome.model.meta.ShareMember
 
setChild(IObject) - Method in class ome.model.screen.ScreenPlateLink
 
setChild(IObject) - Method in class ome.model.screen.WellReagentLink
 
setChildFolders(Set<Folder>) - Method in class ome.model.containers.Folder
setter for childFolders should be avoided.
setClientPath(String) - Method in class ome.model.fs.FilesetEntry
 
setClosed(Timestamp) - Method in class ome.model.meta.Session
 
setCo2percent(Double) - Method in class ome.model.acquisition.ImagingEnvironment
 
setCodomainMapContext(int, CodomainMapContext) - Method in class ome.model.display.ChannelBinding
Sets the ome.model.display.CodomainMapContext at the given index.
setCoefficient(Double) - Method in class ome.model.display.ChannelBinding
 
setColumn(Integer) - Method in class ome.model.screen.Well
 
setColumnNamingConvention(String) - Method in class ome.model.screen.Plate
 
setColumns(Integer) - Method in class ome.model.screen.Plate
 
setCompression(Double) - Method in class ome.model.display.RenderingDef
 
setConfig(List<NamedValue>) - Method in class ome.model.meta.Experimenter
 
setConfig(List<NamedValue>) - Method in class ome.model.meta.ExperimenterGroup
 
setConn(String) - Method in class ome.model.meta.Node
 
setConstant(Boolean) - Method in class ome.model.display.PlaneSlicingContext
 
setContainingEvent(Event) - Method in class ome.model.meta.Event
 
setContext(IObject) - Method in class ome.model.internal.Details
set entity to which this Details belongs.
setContexts(Object[]) - Method in class ome.model.internal.Details
 
setContrastMethod(ContrastMethod) - Method in class ome.model.core.LogicalChannel
 
setCorrection(Correction) - Method in class ome.model.acquisition.Objective
 
setCorrectionCollar(Double) - Method in class ome.model.acquisition.ObjectiveSettings
 
setCreationEvent(Event) - Method in interface ome.model.IDetails
 
setCreationEvent(Event) - Method in class ome.model.internal.Details
 
setCtime(Timestamp) - Method in class ome.model.core.OriginalFile
 
setCurrentEventLog(long, String) - Method in class ome.util.actions.PostgresSqlAction
 
setCurrentEventLog(long, String) - Method in class ome.util.SqlAction.Impl
 
setCurrentEventLog(long, String) - Method in interface ome.util.SqlAction
 
setCurrentPatch(Integer) - Method in class ome.model.meta.DBPatch
 
setCurrentVersion(String) - Method in class ome.model.meta.DBPatch
 
setCutIn(Length) - Method in class ome.model.acquisition.TransmittanceRange
 
setCutInTolerance(Length) - Method in class ome.model.acquisition.TransmittanceRange
 
setCutOut(Length) - Method in class ome.model.acquisition.TransmittanceRange
 
setCutOutTolerance(Length) - Method in class ome.model.acquisition.TransmittanceRange
 
setD(String) - Method in class ome.model.roi.Path
Deprecated.
 
setData(byte[]) - Method in class ome.model.meta.Share
 
setDatasetLinks(Set<ProjectDatasetLink>) - Method in class ome.model.containers.Project
setter for datasetLinks should be avoided.
setDatasetLinks(Set<DatasetImageLink>) - Method in class ome.model.core.Image
setter for datasetLinks should be avoided.
setDatasetLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Project
 
setDatasetLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Image
 
setDefaultEventType(String) - Method in class ome.model.meta.Session
 
setDefaultSample(Integer) - Method in class ome.model.screen.Plate
 
setDefaultT(Integer) - Method in class ome.model.display.RenderingDef
 
setDefaultZ(Integer) - Method in class ome.model.display.RenderingDef
 
setDeltaT(Time) - Method in class ome.model.core.PlaneInfo
 
setDescription(String) - Method in class ome.model.annotations.Annotation
 
setDescription(String) - Method in class ome.model.containers.Dataset
 
setDescription(String) - Method in class ome.model.containers.Folder
 
setDescription(String) - Method in class ome.model.containers.Project
 
setDescription(String) - Method in class ome.model.core.Image
 
setDescription(String) - Method in class ome.model.experiment.Experiment
 
setDescription(String) - Method in class ome.model.experiment.MicrobeamManipulation
 
setDescription(String) - Method in class ome.model.jobs.ScriptJob
 
setDescription(String) - Method in class ome.model.meta.ExperimenterGroup
 
setDescription(String) - Method in class ome.model.meta.Namespace
 
setDescription(String) - Method in class ome.model.roi.Roi
 
setDescription(String) - Method in class ome.model.screen.Plate
 
setDescription(String) - Method in class ome.model.screen.PlateAcquisition
 
setDescription(String) - Method in class ome.model.screen.Reagent
 
setDescription(String) - Method in class ome.model.screen.Screen
 
setDetails(Details) - Method in class ome.model.acquisition.Detector
 
setDetails(Details) - Method in class ome.model.acquisition.DetectorSettings
 
setDetails(Details) - Method in class ome.model.acquisition.Dichroic
 
setDetails(Details) - Method in class ome.model.acquisition.Filter
 
setDetails(Details) - Method in class ome.model.acquisition.FilterSet
 
setDetails(Details) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
setDetails(Details) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
setDetails(Details) - Method in class ome.model.acquisition.ImagingEnvironment
 
setDetails(Details) - Method in class ome.model.acquisition.Instrument
 
setDetails(Details) - Method in class ome.model.acquisition.LightPath
 
setDetails(Details) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
setDetails(Details) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
setDetails(Details) - Method in class ome.model.acquisition.LightSettings
 
setDetails(Details) - Method in class ome.model.acquisition.LightSource
 
setDetails(Details) - Method in class ome.model.acquisition.Microscope
 
setDetails(Details) - Method in class ome.model.acquisition.Objective
 
setDetails(Details) - Method in class ome.model.acquisition.ObjectiveSettings
 
setDetails(Details) - Method in class ome.model.acquisition.OTF
 
setDetails(Details) - Method in class ome.model.acquisition.StageLabel
 
setDetails(Details) - Method in class ome.model.acquisition.TransmittanceRange
 
setDetails(Details) - Method in class ome.model.annotations.Annotation
 
setDetails(Details) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.ChannelAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.DatasetAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.DetectorAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.DichroicAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.FilesetAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.FilterAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.FolderAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.ImageAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.LightPathAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.NodeAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.PlateAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.ProjectAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.ReagentAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.RoiAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.ScreenAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.SessionAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.ShapeAnnotationLink
 
setDetails(Details) - Method in class ome.model.annotations.WellAnnotationLink
 
setDetails(Details) - Method in class ome.model.containers.Dataset
 
setDetails(Details) - Method in class ome.model.containers.DatasetImageLink
 
setDetails(Details) - Method in class ome.model.containers.Folder
 
setDetails(Details) - Method in class ome.model.containers.FolderImageLink
 
setDetails(Details) - Method in class ome.model.containers.FolderRoiLink
 
setDetails(Details) - Method in class ome.model.containers.Project
 
setDetails(Details) - Method in class ome.model.containers.ProjectDatasetLink
 
setDetails(Details) - Method in class ome.model.core.Channel
 
setDetails(Details) - Method in class ome.model.core.Image
 
setDetails(Details) - Method in class ome.model.core.LogicalChannel
 
setDetails(Details) - Method in class ome.model.core.OriginalFile
 
setDetails(Details) - Method in class ome.model.core.Pixels
 
setDetails(Details) - Method in class ome.model.core.PixelsOriginalFileMap
 
setDetails(Details) - Method in class ome.model.core.PlaneInfo
 
setDetails(Details) - Method in class ome.model.display.ChannelBinding
 
setDetails(Details) - Method in class ome.model.display.CodomainMapContext
 
setDetails(Details) - Method in class ome.model.display.ProjectionDef
 
setDetails(Details) - Method in class ome.model.display.QuantumDef
 
setDetails(Details) - Method in class ome.model.display.RenderingDef
 
setDetails(Details) - Method in class ome.model.display.Thumbnail
 
setDetails(Details) - Method in class ome.model.enums.AcquisitionMode
 
setDetails(Details) - Method in class ome.model.enums.AdminPrivilege
 
setDetails(Details) - Method in class ome.model.enums.ArcType
 
setDetails(Details) - Method in class ome.model.enums.Binning
 
setDetails(Details) - Method in class ome.model.enums.ChecksumAlgorithm
 
setDetails(Details) - Method in class ome.model.enums.ContrastMethod
 
setDetails(Details) - Method in class ome.model.enums.Correction
 
setDetails(Details) - Method in class ome.model.enums.DetectorType
 
setDetails(Details) - Method in class ome.model.enums.DimensionOrder
 
setDetails(Details) - Method in class ome.model.enums.EventType
 
setDetails(Details) - Method in class ome.model.enums.ExperimentType
 
setDetails(Details) - Method in class ome.model.enums.Family
 
setDetails(Details) - Method in class ome.model.enums.FilamentType
 
setDetails(Details) - Method in class ome.model.enums.FilterType
 
setDetails(Details) - Method in class ome.model.enums.Format
 
setDetails(Details) - Method in class ome.model.enums.Illumination
 
setDetails(Details) - Method in class ome.model.enums.Immersion
 
setDetails(Details) - Method in class ome.model.enums.LaserMedium
 
setDetails(Details) - Method in class ome.model.enums.LaserType
 
setDetails(Details) - Method in class ome.model.enums.Medium
 
setDetails(Details) - Method in class ome.model.enums.MicrobeamManipulationType
 
setDetails(Details) - Method in class ome.model.enums.MicroscopeType
 
setDetails(Details) - Method in class ome.model.enums.PhotometricInterpretation
 
setDetails(Details) - Method in class ome.model.enums.PixelsType
 
setDetails(Details) - Method in class ome.model.enums.ProjectionAxis
 
setDetails(Details) - Method in class ome.model.enums.ProjectionType
 
setDetails(Details) - Method in class ome.model.enums.Pulse
 
setDetails(Details) - Method in class ome.model.enums.RenderingModel
 
setDetails(Details) - Method in class ome.model.experiment.Experiment
 
setDetails(Details) - Method in class ome.model.experiment.MicrobeamManipulation
 
setDetails(Details) - Method in class ome.model.fs.Fileset
 
setDetails(Details) - Method in class ome.model.fs.FilesetEntry
 
setDetails(Details) - Method in class ome.model.fs.FilesetJobLink
 
setDetails(Details) - Method in class ome.model.internal.Link
 
setDetails(Details) - Method in class ome.model.jobs.Job
 
setDetails(Details) - Method in class ome.model.jobs.JobOriginalFileLink
 
setDetails(Details) - Method in class ome.model.jobs.JobStatus
 
setDetails(Details) - Method in class ome.model.meta.DBPatch
 
setDetails(Details) - Method in class ome.model.meta.Event
 
setDetails(Details) - Method in class ome.model.meta.EventLog
 
setDetails(Details) - Method in class ome.model.meta.Experimenter
 
setDetails(Details) - Method in class ome.model.meta.ExperimenterGroup
 
setDetails(Details) - Method in class ome.model.meta.ExternalInfo
 
setDetails(Details) - Method in class ome.model.meta.GroupExperimenterMap
 
setDetails(Details) - Method in class ome.model.meta.Namespace
 
setDetails(Details) - Method in class ome.model.meta.Node
 
setDetails(Details) - Method in class ome.model.meta.Session
 
setDetails(Details) - Method in class ome.model.meta.ShareMember
 
setDetails(Details) - Method in class ome.model.roi.AffineTransform
 
setDetails(Details) - Method in class ome.model.roi.Roi
 
setDetails(Details) - Method in class ome.model.roi.Shape
 
setDetails(Details) - Method in class ome.model.screen.Plate
 
setDetails(Details) - Method in class ome.model.screen.PlateAcquisition
 
setDetails(Details) - Method in class ome.model.screen.Reagent
 
setDetails(Details) - Method in class ome.model.screen.Screen
 
setDetails(Details) - Method in class ome.model.screen.ScreenPlateLink
 
setDetails(Details) - Method in class ome.model.screen.Well
 
setDetails(Details) - Method in class ome.model.screen.WellReagentLink
 
setDetails(Details) - Method in class ome.model.screen.WellSample
 
setDetails(Details) - Method in class ome.model.stats.StatsInfo
 
setDetector(Detector) - Method in class ome.model.acquisition.DetectorSettings
 
setDetector(Set<Detector>) - Method in class ome.model.acquisition.Instrument
setter for detector should be avoided.
setDetectorSettings(DetectorSettings) - Method in class ome.model.core.LogicalChannel
 
setDichroic(Dichroic) - Method in class ome.model.acquisition.FilterSet
 
setDichroic(Set<Dichroic>) - Method in class ome.model.acquisition.Instrument
setter for dichroic should be avoided.
setDichroic(Dichroic) - Method in class ome.model.acquisition.LightPath
 
setDimensionOrder(DimensionOrder) - Method in class ome.model.core.Pixels
 
setDisallow(boolean[], int, boolean) - Static method in class ome.model.internal.Permissions
Deprecated.
setDisallow(int, boolean) - Method in class ome.model.internal.Permissions
 
setDisallowAnnotate(boolean) - Method in class ome.model.internal.Permissions
 
setDisallowChgrp(boolean) - Method in class ome.model.internal.Permissions
 
setDisallowChown(boolean) - Method in class ome.model.internal.Permissions
 
setDisallowDelete(boolean) - Method in class ome.model.internal.Permissions
 
setDisallowEdit(boolean) - Method in class ome.model.internal.Permissions
 
setDisallowLink(boolean) - Method in class ome.model.internal.Permissions
 
setDisplay(Boolean) - Method in class ome.model.meta.Namespace
 
setDisplayName(String) - Method in class ome.model.meta.Namespace
 
setDoubleValue(Double) - Method in class ome.model.annotations.DoubleAnnotation
 
setDown(Timestamp) - Method in class ome.model.meta.Node
 
setEmail(String) - Method in class ome.model.meta.Experimenter
 
setEmissionFilterLink(Set<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.Filter
setter for emissionFilterLink should be avoided.
setEmissionFilterLink(Set<FilterSetEmissionFilterLink>) - Method in class ome.model.acquisition.FilterSet
setter for emissionFilterLink should be avoided.
setEmissionFilterLink(Set<LightPathEmissionFilterLink>) - Method in class ome.model.acquisition.LightPath
setter for emissionFilterLink should be avoided.
setEmissionFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Filter
 
setEmissionFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.FilterSet
 
setEmissionFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightPath
 
setEmissionWave(Length) - Method in class ome.model.core.LogicalChannel
 
setEndPlane(Integer) - Method in class ome.model.display.ProjectionDef
 
setEndTime(Timestamp) - Method in class ome.model.screen.PlateAcquisition
 
setEntityId(Long) - Method in class ome.model.meta.EventLog
 
setEntityId(Long) - Method in class ome.model.meta.ExternalInfo
 
setEntityType(String) - Method in class ome.model.meta.EventLog
 
setEntityType(String) - Method in class ome.model.meta.ExternalInfo
 
setEvent(Event) - Method in class ome.model.meta.EventLog
 
setEvents(Set<Event>) - Method in class ome.model.meta.Session
setter for events should be avoided.
setExcitationFilterLink(Set<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.Filter
setter for excitationFilterLink should be avoided.
setExcitationFilterLink(Set<FilterSetExcitationFilterLink>) - Method in class ome.model.acquisition.FilterSet
setter for excitationFilterLink should be avoided.
setExcitationFilterLink(List<LightPathExcitationFilterLink>) - Method in class ome.model.acquisition.LightPath
setter for excitationFilterLink should be avoided.
setExcitationFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.Filter
 
setExcitationFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.FilterSet
 
setExcitationFilterLinkCountPerOwner(Map<Long, Long>) - Method in class ome.model.acquisition.LightPath
 
setExcitationWave(Length) - Method in class ome.model.core.LogicalChannel
 
setExperiment(Experiment) - Method in class ome.model.core.Image
 
setExperiment(Experiment) - Method in class ome.model.experiment.MicrobeamManipulation
 
setExperimenter(Experimenter) - Method in class ome.model.meta.Event
 
setExperimenterGroup(ExperimenterGroup) - Method in class ome.model.meta.Event
 
setExposureTime(Time) - Method in class ome.model.core.PlaneInfo
 
setExternalDescription(String) - Method in class ome.model.screen.Well
 
setExternalIdentifier(String) - Method in class ome.model.screen.Plate
 
setExternalIdentifier(String) - Method in class ome.model.screen.Well
 
setExternalInfo(ExternalInfo) - Method in class ome.model.internal.Details
 
setFamily(Family) - Method in class ome.model.display.ChannelBinding
 
setFieldBridge(FieldBridge) - Static method in class ome.util.DetailsFieldBridge
 
setFile(OriginalFile) - Method in class ome.model.annotations.FileAnnotation
 
setFileRepo(Collection<Long>, String) - Method in class ome.util.actions.PostgresSqlAction
 
setFileRepo(Collection<Long>, String) - Method in interface ome.util.SqlAction
 
setFileset(Fileset) - Method in class ome.model.core.Image
 
setFileset(Fileset) - Method in class ome.model.fs.FilesetEntry
 
setFilesetEntries(Set<FilesetEntry>) - Method in class ome.model.core.OriginalFile
setter for filesetEntries should be avoided.
setFilesetEntry(int, FilesetEntry) - Method in class ome.model.fs.Fileset
Sets the ome.model.fs.FilesetEntry at the given index.
setFilesetJobLink(int, FilesetJobLink) - Method in class ome.model.fs.Fileset
Sets the ome.model.fs.FilesetJobLink at the given index.
setFillColor(Integer) - Method in class ome.model.roi.Shape
 
setFillRule(String) - Method in class ome.model.roi.Shape
 
setFilter(Set<Filter>) - Method in class ome.model.acquisition.Instrument
setter for filter should be avoided.
setFilter(Filter) - Method in class ome.parameters.Parameters
 
setFilterSet(Set<FilterSet>) - Method in class ome.model.acquisition.Instrument
setter for filterSet should be avoided.
setFilterSet(FilterSet) - Method in class ome.model.acquisition.OTF
 
setFilterSet(FilterSet) - Method in class ome.model.core.LogicalChannel
 
setFilterWheel(String) - Method in class ome.model.acquisition.Filter
 
setFinished(Timestamp) - Method in class ome.model.jobs.Job
 
setFinished(Timestamp) - Method in class ome.model.meta.DBPatch
 
setFirstName(String) - Method in class ome.model.meta.Experimenter
 
setFluor(String) - Method in class ome.model.core.LogicalChannel
 
setFolderLinks(Set<FolderImageLink>) - Method in class ome.model.core.Image
setter for folderLinks should be avoided.
setFolderLinks(Set<FolderRoiLink>) - Method in class ome.model.roi.Roi
setter for folderLinks should be avoided.
setFolderLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Image
 
setFolderLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.roi.Roi
 
setFontFamily(String) - Method in class ome.model.roi.Shape
 
setFontSize(Length) - Method in class ome.model.roi.Shape
 
setFontStyle(String) - Method in class ome.model.roi.Shape
 
setFormat(Format) - Method in class ome.model.core.Image
 
setFrequencyMultiplication(Integer) - Method in class ome.model.acquisition.Laser
 
setGain(Double) - Method in class ome.model.acquisition.Detector
 
setGain(Double) - Method in class ome.model.acquisition.DetectorSettings
 
setGlobalMax(Double) - Method in class ome.model.stats.StatsInfo
 
setGlobalMin(Double) - Method in class ome.model.stats.StatsInfo
 
setGreen(Integer) - Method in class ome.model.core.Channel
 
setGreen(Integer) - Method in class ome.model.display.ChannelBinding
 
setGreen(Integer) - Method in class ome.model.screen.Well
 
setGroup(ExperimenterGroup) - Method in class ome.model.internal.Details
 
setGroup(ExperimenterGroup) - Method in class ome.model.meta.Share
 
setGroupExperimenterMap(List<GroupExperimenterMap>) - Method in class ome.model.meta.Experimenter
setter for groupExperimenterMap should be avoided.
setGroupExperimenterMap(int, GroupExperimenterMap) - Method in class ome.model.meta.Experimenter
Sets the ome.model.meta.GroupExperimenterMap at the given index.
setGroupExperimenterMap(Set<GroupExperimenterMap>) - Method in class ome.model.meta.ExperimenterGroup
setter for groupExperimenterMap should be avoided.
setGroupname(String) - Method in class ome.model.jobs.Job
 
setHash(String) - Method in class ome.model.core.OriginalFile
 
setHasher(ChecksumAlgorithm) - Method in class ome.model.core.OriginalFile
 
setHeight(Double) - Method in class ome.model.roi.Mask
 
setHeight(Double) - Method in class ome.model.roi.Rectangle
 
setHumidity(Double) - Method in class ome.model.acquisition.ImagingEnvironment
 
setId(Long) - Method in class ome.model.acquisition.Detector
 
setId(Long) - Method in class ome.model.acquisition.DetectorSettings
 
setId(Long) - Method in class ome.model.acquisition.Dichroic
 
setId(Long) - Method in class ome.model.acquisition.Filter
 
setId(Long) - Method in class ome.model.acquisition.FilterSet
 
setId(Long) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
setId(Long) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
setId(Long) - Method in class ome.model.acquisition.ImagingEnvironment
 
setId(Long) - Method in class ome.model.acquisition.Instrument
 
setId(Long) - Method in class ome.model.acquisition.LightPath
 
setId(Long) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
setId(Long) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
setId(Long) - Method in class ome.model.acquisition.LightSettings
 
setId(Long) - Method in class ome.model.acquisition.LightSource
 
setId(Long) - Method in class ome.model.acquisition.Microscope
 
setId(Long) - Method in class ome.model.acquisition.Objective
 
setId(Long) - Method in class ome.model.acquisition.ObjectiveSettings
 
setId(Long) - Method in class ome.model.acquisition.OTF
 
setId(Long) - Method in class ome.model.acquisition.StageLabel
 
setId(Long) - Method in class ome.model.acquisition.TransmittanceRange
 
setId(Long) - Method in class ome.model.annotations.Annotation
 
setId(Long) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.ChannelAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.DatasetAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.DetectorAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.DichroicAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.FilesetAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.FilterAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.FolderAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.ImageAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.LightPathAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.NodeAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.PlateAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.ProjectAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.ReagentAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.RoiAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.ScreenAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.SessionAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.ShapeAnnotationLink
 
setId(Long) - Method in class ome.model.annotations.WellAnnotationLink
 
setId(Long) - Method in class ome.model.containers.Dataset
 
setId(Long) - Method in class ome.model.containers.DatasetImageLink
 
setId(Long) - Method in class ome.model.containers.Folder
 
setId(Long) - Method in class ome.model.containers.FolderImageLink
 
setId(Long) - Method in class ome.model.containers.FolderRoiLink
 
setId(Long) - Method in class ome.model.containers.Project
 
setId(Long) - Method in class ome.model.containers.ProjectDatasetLink
 
setId(Long) - Method in class ome.model.core.Channel
 
setId(Long) - Method in class ome.model.core.Image
 
setId(Long) - Method in class ome.model.core.LogicalChannel
 
setId(Long) - Method in class ome.model.core.OriginalFile
 
setId(Long) - Method in class ome.model.core.Pixels
 
setId(Long) - Method in class ome.model.core.PixelsOriginalFileMap
 
setId(Long) - Method in class ome.model.core.PlaneInfo
 
setId(Long) - Method in class ome.model.display.ChannelBinding
 
setId(Long) - Method in class ome.model.display.CodomainMapContext
 
setId(Long) - Method in class ome.model.display.ProjectionDef
 
setId(Long) - Method in class ome.model.display.QuantumDef
 
setId(Long) - Method in class ome.model.display.RenderingDef
 
setId(Long) - Method in class ome.model.display.Thumbnail
 
setId(Long) - Method in class ome.model.enums.AcquisitionMode
 
setId(Long) - Method in class ome.model.enums.AdminPrivilege
 
setId(Long) - Method in class ome.model.enums.ArcType
 
setId(Long) - Method in class ome.model.enums.Binning
 
setId(Long) - Method in class ome.model.enums.ChecksumAlgorithm
 
setId(Long) - Method in class ome.model.enums.ContrastMethod
 
setId(Long) - Method in class ome.model.enums.Correction
 
setId(Long) - Method in class ome.model.enums.DetectorType
 
setId(Long) - Method in class ome.model.enums.DimensionOrder
 
setId(Long) - Method in class ome.model.enums.EventType
 
setId(Long) - Method in class ome.model.enums.ExperimentType
 
setId(Long) - Method in class ome.model.enums.Family
 
setId(Long) - Method in class ome.model.enums.FilamentType
 
setId(Long) - Method in class ome.model.enums.FilterType
 
setId(Long) - Method in class ome.model.enums.Format
 
setId(Long) - Method in class ome.model.enums.Illumination
 
setId(Long) - Method in class ome.model.enums.Immersion
 
setId(Long) - Method in class ome.model.enums.LaserMedium
 
setId(Long) - Method in class ome.model.enums.LaserType
 
setId(Long) - Method in class ome.model.enums.Medium
 
setId(Long) - Method in class ome.model.enums.MicrobeamManipulationType
 
setId(Long) - Method in class ome.model.enums.MicroscopeType
 
setId(Long) - Method in class ome.model.enums.PhotometricInterpretation
 
setId(Long) - Method in class ome.model.enums.PixelsType
 
setId(Long) - Method in class ome.model.enums.ProjectionAxis
 
setId(Long) - Method in class ome.model.enums.ProjectionType
 
setId(Long) - Method in class ome.model.enums.Pulse
 
setId(Long) - Method in class ome.model.enums.RenderingModel
 
setId(Long) - Method in class ome.model.experiment.Experiment
 
setId(Long) - Method in class ome.model.experiment.MicrobeamManipulation
 
setId(Long) - Method in class ome.model.fs.Fileset
 
setId(Long) - Method in class ome.model.fs.FilesetEntry
 
setId(Long) - Method in class ome.model.fs.FilesetJobLink
 
setId(Long) - Method in class ome.model.internal.Link
 
setId(Long) - Method in interface ome.model.IObject
usually unneeded.
setId(Long) - Method in class ome.model.jobs.Job
 
setId(Long) - Method in class ome.model.jobs.JobOriginalFileLink
 
setId(Long) - Method in class ome.model.jobs.JobStatus
 
setId(Long) - Method in class ome.model.meta.DBPatch
 
setId(Long) - Method in class ome.model.meta.Event
 
setId(Long) - Method in class ome.model.meta.EventLog
 
setId(Long) - Method in class ome.model.meta.Experimenter
 
setId(Long) - Method in class ome.model.meta.ExperimenterGroup
 
setId(Long) - Method in class ome.model.meta.ExternalInfo
 
setId(Long) - Method in class ome.model.meta.GroupExperimenterMap
 
setId(Long) - Method in class ome.model.meta.Namespace
 
setId(Long) - Method in class ome.model.meta.Node
 
setId(Long) - Method in class ome.model.meta.Session
 
setId(Long) - Method in class ome.model.meta.ShareMember
 
setId(Long) - Method in class ome.model.roi.AffineTransform
 
setId(Long) - Method in class ome.model.roi.Roi
 
setId(Long) - Method in class ome.model.roi.Shape
 
setId(Long) - Method in class ome.model.screen.Plate
 
setId(Long) - Method in class ome.model.screen.PlateAcquisition
 
setId(Long) - Method in class ome.model.screen.Reagent
 
setId(Long) - Method in class ome.model.screen.Screen
 
setId(Long) - Method in class ome.model.screen.ScreenPlateLink
 
setId(Long) - Method in class ome.model.screen.Well
 
setId(Long) - Method in class ome.model.screen.WellReagentLink
 
setId(Long) - Method in class ome.model.screen.WellSample
 
setId(Long) - Method in class ome.model.stats.StatsInfo
 
setId(Long) - Method in class ome.util.PermDetails
 
setIllumination(Illumination) - Method in class ome.model.core.LogicalChannel
 
setImage(Image) - Method in class ome.model.core.Pixels
 
setImage(Image) - Method in class ome.model.roi.Roi
 
setImage(Image) - Method in class ome.model.screen.WellSample
 
setImageDescription(String) - Method in class ome.model.jobs.ImportJob
Deprecated.
 
setImageLinks(Set<DatasetImageLink>) - Method in class ome.model.containers.Dataset
setter for imageLinks should be avoided.
setImageLinks(Set<FolderImageLink>) - Method in class ome.model.containers.Folder
setter for imageLinks should be avoided.
setImageLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Dataset
 
setImageLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Folder
 
setImageName(String) - Method in class ome.model.jobs.ImportJob
Deprecated.
 
setImages(Set<Image>) - Method in class ome.model.fs.Fileset
setter for images should be avoided.
setImagingEnvironment(ImagingEnvironment) - Method in class ome.model.core.Image
 
setImmersion(Immersion) - Method in class ome.model.acquisition.Objective
 
setInputEnd(Double) - Method in class ome.model.display.ChannelBinding
 
setInputStart(Double) - Method in class ome.model.display.ChannelBinding
 
setInstitution(String) - Method in class ome.model.meta.Experimenter
 
setInstrument(Instrument) - Method in class ome.model.acquisition.Detector
 
setInstrument(Instrument) - Method in class ome.model.acquisition.Dichroic
 
setInstrument(Instrument) - Method in class ome.model.acquisition.Filter
 
setInstrument(Instrument) - Method in class ome.model.acquisition.FilterSet
 
setInstrument(Instrument) - Method in class ome.model.acquisition.LightSource
 
setInstrument(Instrument) - Method in class ome.model.acquisition.Objective
 
setInstrument(Instrument) - Method in class ome.model.acquisition.OTF
 
setInstrument(Instrument) - Method in class ome.model.core.Image
 
setIntegration(Integer) - Method in class ome.model.acquisition.DetectorSettings
 
setIris(Boolean) - Method in class ome.model.acquisition.Objective
 
setItemCount(Long) - Method in class ome.model.meta.Share
 
setJobLinks(List<FilesetJobLink>) - Method in class ome.model.fs.Fileset
setter for jobLinks should be avoided.
setJobLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.fs.Fileset
 
setKey(String) - Method in class ome.util.MapPut
 
setKeywords(List<String>) - Method in class ome.model.meta.Namespace
 
setLaserMedium(LaserMedium) - Method in class ome.model.acquisition.Laser
 
setLastName(String) - Method in class ome.model.meta.Experimenter
 
setLdap(Boolean) - Method in class ome.model.meta.Experimenter
 
setLdap(Boolean) - Method in class ome.model.meta.ExperimenterGroup
 
setLensNA(Double) - Method in class ome.model.acquisition.Objective
 
setLightPath(LightPath) - Method in class ome.model.core.LogicalChannel
 
setLightPathExcitationFilterLink(int, LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath
Sets the ome.model.acquisition.LightPathExcitationFilterLink at the given index.
setLightSource(Set<LightSource>) - Method in class ome.model.acquisition.Instrument
setter for lightSource should be avoided.
setLightSource(LightSource) - Method in class ome.model.acquisition.LightSettings
 
setLightSourceSettings(LightSettings) - Method in class ome.model.core.LogicalChannel
 
setLightSourceSettings(Set<LightSettings>) - Method in class ome.model.experiment.MicrobeamManipulation
setter for lightSourceSettings should be avoided.
setLocked(Boolean) - Method in class ome.model.roi.Shape
 
setLogicalChannel(LogicalChannel) - Method in class ome.model.core.Channel
 
setLogs(Set<EventLog>) - Method in class ome.model.meta.Event
setter for logs should be avoided.
setLongValue(Long) - Method in class ome.model.annotations.LongAnnotation
 
setLookupTable(String) - Method in class ome.model.core.Channel
 
setLookupTable(String) - Method in class ome.model.display.ChannelBinding
 
setLotNumber(String) - Method in class ome.model.acquisition.Detector
 
setLotNumber(String) - Method in class ome.model.acquisition.Dichroic
 
setLotNumber(String) - Method in class ome.model.acquisition.Filter
 
setLotNumber(String) - Method in class ome.model.acquisition.FilterSet
 
setLotNumber(String) - Method in class ome.model.acquisition.LightSource
 
setLotNumber(String) - Method in class ome.model.acquisition.Microscope
 
setLotNumber(String) - Method in class ome.model.acquisition.Objective
 
setLowerLimit(Integer) - Method in class ome.model.display.PlaneSlicingContext
 
setLsid(String) - Method in class ome.model.meta.ExternalInfo
 
setManufacturer(String) - Method in class ome.model.acquisition.Detector
 
setManufacturer(String) - Method in class ome.model.acquisition.Dichroic
 
setManufacturer(String) - Method in class ome.model.acquisition.Filter
 
setManufacturer(String) - Method in class ome.model.acquisition.FilterSet
 
setManufacturer(String) - Method in class ome.model.acquisition.LightSource
 
setManufacturer(String) - Method in class ome.model.acquisition.Microscope
 
setManufacturer(String) - Method in class ome.model.acquisition.Objective
 
setMap(List<NamedValue>) - Method in class ome.model.acquisition.GenericExcitationSource
 
setMap(List<NamedValue>) - Method in class ome.model.acquisition.ImagingEnvironment
 
setMap(Map<String, Object>) - Method in class ome.util.MapPut
 
setMapValue(List<NamedValue>) - Method in class ome.model.annotations.MapAnnotation
 
setMarkerEnd(String) - Method in class ome.model.roi.Line
 
setMarkerEnd(String) - Method in class ome.model.roi.Polyline
 
setMarkerStart(String) - Method in class ome.model.roi.Line
 
setMarkerStart(String) - Method in class ome.model.roi.Polyline
 
setMaximumFieldCount(Integer) - Method in class ome.model.screen.PlateAcquisition
 
setMedium(Medium) - Method in class ome.model.acquisition.ObjectiveSettings
 
setMessage(String) - Method in class ome.model.jobs.Job
 
setMessage(String) - Method in class ome.model.meta.DBPatch
 
setMessage(String) - Method in class ome.model.meta.Session
 
setMethodology(String) - Method in class ome.model.core.Pixels
 
setMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.model.acquisition.LightSettings
 
setMicrobeamManipulation(Set<MicrobeamManipulation>) - Method in class ome.model.experiment.Experiment
setter for microbeamManipulation should be avoided.
setMicroscope(Microscope) - Method in class ome.model.acquisition.Instrument
 
setMiddleName(String) - Method in class ome.model.meta.Experimenter
 
setMimetype(String) - Method in class ome.model.core.OriginalFile
 
setMimeType(String) - Method in class ome.model.display.Thumbnail
 
setMode(AcquisitionMode) - Method in class ome.model.core.LogicalChannel
 
setModel(String) - Method in class ome.model.acquisition.Detector
 
setModel(String) - Method in class ome.model.acquisition.Dichroic
 
setModel(String) - Method in class ome.model.acquisition.Filter
 
setModel(String) - Method in class ome.model.acquisition.FilterSet
 
setModel(String) - Method in class ome.model.acquisition.LightSource
 
setModel(String) - Method in class ome.model.acquisition.Microscope
 
setModel(String) - Method in class ome.model.acquisition.Objective
 
setModel(RenderingModel) - Method in class ome.model.display.RenderingDef
 
setMtime(Timestamp) - Method in class ome.model.core.OriginalFile
 
setMultivalued(Boolean) - Method in class ome.model.meta.Namespace
 
setName(String) - Method in class ome.model.acquisition.StageLabel
 
setName(String) - Method in class ome.model.annotations.Annotation
 
setName(String) - Method in class ome.model.containers.Dataset
 
setName(String) - Method in class ome.model.containers.Folder
 
setName(String) - Method in class ome.model.containers.Project
 
setName(String) - Method in class ome.model.core.Image
 
setName(String) - Method in class ome.model.core.LogicalChannel
 
setName(String) - Method in class ome.model.core.OriginalFile
 
setName(String) - Method in class ome.model.display.RenderingDef
 
setName(String) - Method in class ome.model.internal.NamedValue
 
setName(String) - Method in class ome.model.meta.ExperimenterGroup
 
setName(String) - Method in class ome.model.meta.Namespace
 
setName(String) - Method in class ome.model.roi.Roi
 
setName(String) - Method in class ome.model.screen.Plate
 
setName(String) - Method in class ome.model.screen.PlateAcquisition
 
setName(String) - Method in class ome.model.screen.Reagent
 
setName(String) - Method in class ome.model.screen.Screen
 
setNdFilter(Double) - Method in class ome.model.core.LogicalChannel
 
setNode(Node) - Method in class ome.model.meta.Session
 
setNoiseReduction(Boolean) - Method in class ome.model.display.ChannelBinding
 
setNominalMagnification(Double) - Method in class ome.model.acquisition.Objective
 
setNs(String) - Method in class ome.model.annotations.Annotation
 
setObject(Object) - Method in class ome.util.MapPut
 
setObjective(Set<Objective>) - Method in class ome.model.acquisition.Instrument
setter for objective should be avoided.
setObjective(Objective) - Method in class ome.model.acquisition.ObjectiveSettings
 
setObjective(Objective) - Method in class ome.model.acquisition.OTF
 
setObjectiveSettings(ObjectiveSettings) - Method in class ome.model.core.Image
 
setOffsetValue(Double) - Method in class ome.model.acquisition.Detector
 
setOffsetValue(Double) - Method in class ome.model.acquisition.DetectorSettings
 
setOmeName(String) - Method in class ome.model.meta.Experimenter
 
setOpticalAxisAveraged(Boolean) - Method in class ome.model.acquisition.OTF
 
setOptions(Options) - Method in class ome.parameters.Parameters
 
setOrder(ByteOrder) - Method in class ome.util.PixelData
Set the byte order of the backing buffer.
setOriginalFile(OriginalFile) - Method in class ome.model.fs.FilesetEntry
 
setOriginalFileLinks(Set<JobOriginalFileLink>) - Method in class ome.model.jobs.Job
setter for originalFileLinks should be avoided.
setOriginalFileLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.jobs.Job
 
setOtf(Set<OTF>) - Method in class ome.model.acquisition.Instrument
setter for otf should be avoided.
setOtf(OTF) - Method in class ome.model.core.LogicalChannel
 
setOwner(Experimenter) - Method in interface ome.model.IDetails
 
setOwner(Experimenter) - Method in class ome.model.internal.Details
 
setOwner(Boolean) - Method in class ome.model.meta.GroupExperimenterMap
 
setOwner(Experimenter) - Method in class ome.model.meta.Session
 
setParameterValues(Properties) - Method in class ome.model.units.GenericEnumType
 
setParams(byte[]) - Method in class ome.model.jobs.ParseJob
 
setParent(IObject) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
setParent(IObject) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
setParent(IObject) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
setParent(IObject) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
setParent(IObject) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.ChannelAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.DatasetAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.DetectorAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.DichroicAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.FilesetAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.FilterAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.FolderAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.ImageAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.LightPathAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.NodeAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.PlateAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.ProjectAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.ReagentAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.RoiAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.ScreenAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.SessionAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.ShapeAnnotationLink
 
setParent(IObject) - Method in class ome.model.annotations.WellAnnotationLink
 
setParent(IObject) - Method in class ome.model.containers.DatasetImageLink
 
setParent(IObject) - Method in class ome.model.containers.FolderImageLink
 
setParent(IObject) - Method in class ome.model.containers.FolderRoiLink
 
setParent(IObject) - Method in class ome.model.containers.ProjectDatasetLink
 
setParent(IObject) - Method in class ome.model.core.PixelsOriginalFileMap
 
setParent(IObject) - Method in class ome.model.fs.FilesetJobLink
 
setParent(IObject) - Method in interface ome.model.ILink
 
setParent(IObject) - Method in class ome.model.jobs.JobOriginalFileLink
 
setParent(IObject) - Method in class ome.model.meta.GroupExperimenterMap
 
setParent(IObject) - Method in class ome.model.meta.ShareMember
 
setParent(IObject) - Method in class ome.model.screen.ScreenPlateLink
 
setParent(IObject) - Method in class ome.model.screen.WellReagentLink
 
setParentFolder(Folder) - Method in class ome.model.containers.Folder
 
setPartial(Boolean) - Method in class ome.model.core.Image
 
setPath(String) - Method in class ome.model.acquisition.OTF
 
setPath(String) - Method in class ome.model.core.OriginalFile
 
setPerm1(long) - Method in class ome.model.internal.Permissions
 
setPermissions(Permissions) - Method in interface ome.model.IDetails
 
setPermissions(Permissions) - Method in class ome.model.internal.Details
 
setPermissionsBit(String, long, int) - Method in class ome.util.SqlAction.Impl
 
setPermissionsBit(String, long, int) - Method in interface ome.util.SqlAction
Sets the given permissions bit to 1.
setPhotometricInterpretation(PhotometricInterpretation) - Method in class ome.model.core.LogicalChannel
 
setPhysicalSizeX(Length) - Method in class ome.model.core.Pixels
 
setPhysicalSizeY(Length) - Method in class ome.model.core.Pixels
 
setPhysicalSizeZ(Length) - Method in class ome.model.core.Pixels
 
setPinHoleSize(Length) - Method in class ome.model.core.LogicalChannel
 
setPixels(Pixels) - Method in class ome.model.core.Channel
 
setPixels(List<Pixels>) - Method in class ome.model.core.Image
setter for pixels should be avoided.
setPixels(int, Pixels) - Method in class ome.model.core.Image
Sets the ome.model.core.Pixels at the given index.
setPixels(Pixels) - Method in class ome.model.core.PlaneInfo
 
setPixels(Pixels) - Method in class ome.model.display.RenderingDef
 
setPixels(Pixels) - Method in class ome.model.display.Thumbnail
 
setPixels(Pixels) - Method in class ome.model.roi.Mask
 
setPixelsFileMaps(Set<PixelsOriginalFileMap>) - Method in class ome.model.core.OriginalFile
setter for pixelsFileMaps should be avoided.
setPixelsFileMaps(Set<PixelsOriginalFileMap>) - Method in class ome.model.core.Pixels
setter for pixelsFileMaps should be avoided.
setPixelsFileMapsCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.OriginalFile
 
setPixelsFileMapsCountPerOwner(Map<Long, Long>) - Method in class ome.model.core.Pixels
 
setPixelsNamePathRepo(long, String, String, String) - Method in class ome.util.actions.PostgresSqlAction
 
setPixelsNamePathRepo(long, String, String, String) - Method in interface ome.util.SqlAction
 
setPixelsType(PixelsType) - Method in class ome.model.acquisition.OTF
 
setPixelsType(PixelsType) - Method in class ome.model.core.Pixels
 
setPixelValue(int, double) - Method in class ome.util.PixelData
Sets the pixel intensity value of the pixel at a given offset within the backing buffer.
setPixelValueDirect(int, double) - Method in class ome.util.PixelData
Sets the pixel intensity value of the pixel at a given offset within the backing buffer.
setPlaneInfo(Set<PlaneInfo>) - Method in class ome.model.core.Pixels
setter for planeInfo should be avoided.
setPlanePrevious(Integer) - Method in class ome.model.display.PlaneSlicingContext
 
setPlaneSelected(Integer) - Method in class ome.model.display.PlaneSlicingContext
 
setPlate(Plate) - Method in class ome.model.screen.PlateAcquisition
 
setPlate(Plate) - Method in class ome.model.screen.Well
 
setPlateAcquisition(PlateAcquisition) - Method in class ome.model.screen.WellSample
 
setPlateAcquisitions(Set<PlateAcquisition>) - Method in class ome.model.screen.Plate
setter for plateAcquisitions should be avoided.
setPlateLinks(Set<ScreenPlateLink>) - Method in class ome.model.screen.Screen
setter for plateLinks should be avoided.
setPlateLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Screen
 
setPockelCell(Boolean) - Method in class ome.model.acquisition.Laser
 
setPockelCellSetting(Integer) - Method in class ome.model.core.LogicalChannel
 
setPoints(String) - Method in class ome.model.roi.Polygon
 
setPoints(String) - Method in class ome.model.roi.Polyline
 
setPositionX(Length) - Method in class ome.model.acquisition.StageLabel
 
setPositionX(Length) - Method in class ome.model.core.PlaneInfo
 
setPositionY(Length) - Method in class ome.model.acquisition.StageLabel
 
setPositionY(Length) - Method in class ome.model.core.PlaneInfo
 
setPositionZ(Length) - Method in class ome.model.acquisition.StageLabel
 
setPositionZ(Length) - Method in class ome.model.core.PlaneInfo
 
setPosX(Length) - Method in class ome.model.screen.WellSample
 
setPosY(Length) - Method in class ome.model.screen.WellSample
 
setPower(Power) - Method in class ome.model.acquisition.LightSource
 
setPreviousPatch(Integer) - Method in class ome.model.meta.DBPatch
 
setPreviousVersion(String) - Method in class ome.model.meta.DBPatch
 
setPrimaryChannel(Channel) - Method in class ome.model.core.Pixels
Swaps the first element of channels with the first instance of the given element.
setPrimaryChannelBinding(ChannelBinding) - Method in class ome.model.display.RenderingDef
Swaps the first element of waveRendering with the first instance of the given element.
setPrimaryCodomainMapContext(CodomainMapContext) - Method in class ome.model.display.ChannelBinding
Swaps the first element of spatialDomainEnhancement with the first instance of the given element.
setPrimaryFilesetEntry(FilesetEntry) - Method in class ome.model.fs.Fileset
Swaps the first element of usedFiles with the first instance of the given element.
setPrimaryFilesetJobLink(FilesetJobLink) - Method in class ome.model.fs.Fileset
Swaps the first element of jobLinks with the first instance of the given element.
setPrimaryGroupExperimenterMap(GroupExperimenterMap) - Method in class ome.model.meta.Experimenter
Swaps the first element of groupExperimenterMap with the first instance of the given element.
setPrimaryLightPathExcitationFilterLink(LightPathExcitationFilterLink) - Method in class ome.model.acquisition.LightPath
Swaps the first element of excitationFilterLink with the first instance of the given element.
setPrimaryPixels(Pixels) - Method in class ome.model.core.Image
Swaps the first element of pixels with the first instance of the given element.
setPrimaryProjectionDef(ProjectionDef) - Method in class ome.model.display.RenderingDef
Swaps the first element of projections with the first instance of the given element.
setPrimaryShape(Shape) - Method in class ome.model.roi.Roi
Swaps the first element of shapes with the first instance of the given element.
setPrimaryWellSample(WellSample) - Method in class ome.model.screen.Well
Swaps the first element of wellSamples with the first instance of the given element.
setProjectionDef(int, ProjectionDef) - Method in class ome.model.display.RenderingDef
Sets the ome.model.display.ProjectionDef at the given index.
setProjections(List<ProjectionDef>) - Method in class ome.model.display.RenderingDef
setter for projections should be avoided.
setProjectLinks(Set<ProjectDatasetLink>) - Method in class ome.model.containers.Dataset
setter for projectLinks should be avoided.
setProjectLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Dataset
 
setProtocolDescription(String) - Method in class ome.model.screen.Screen
 
setProtocolIdentifier(String) - Method in class ome.model.screen.Screen
 
setPulse(Pulse) - Method in class ome.model.acquisition.Laser
 
setPump(LightSource) - Method in class ome.model.acquisition.Laser
 
setQuantization(QuantumDef) - Method in class ome.model.display.RenderingDef
 
setRadiusX(Double) - Method in class ome.model.roi.Ellipse
 
setRadiusY(Double) - Method in class ome.model.roi.Ellipse
 
setReadOutRate(Frequency) - Method in class ome.model.acquisition.DetectorSettings
 
setReagentIdentifier(String) - Method in class ome.model.screen.Reagent
 
setReagentLinks(Set<WellReagentLink>) - Method in class ome.model.screen.Well
setter for reagentLinks should be avoided.
setReagentLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Well
 
setReagents(Set<Reagent>) - Method in class ome.model.screen.Screen
setter for reagents should be avoided.
setReagentSetDescription(String) - Method in class ome.model.screen.Screen
 
setReagentSetIdentifier(String) - Method in class ome.model.screen.Screen
 
setRed(Integer) - Method in class ome.model.core.Channel
 
setRed(Integer) - Method in class ome.model.display.ChannelBinding
 
setRed(Integer) - Method in class ome.model.screen.Well
 
setRef(String) - Method in class ome.model.display.Thumbnail
 
setRefractiveIndex(Double) - Method in class ome.model.acquisition.ObjectiveSettings
 
setRelatedTo(Pixels) - Method in class ome.model.core.Pixels
Deprecated.
setRenderingDef(RenderingDef) - Method in class ome.model.display.ChannelBinding
 
setRenderingDef(RenderingDef) - Method in class ome.model.display.ProjectionDef
 
setRepetitionRate(Frequency) - Method in class ome.model.acquisition.Laser
 
setReplacement(IObject) - Method in class ome.model.internal.GraphHolder
used mostly by ome.api.IUpdate.
setRepo(String) - Method in class ome.model.core.OriginalFile
 
setReverse(Boolean) - Method in class ome.model.display.ReverseIntensityContext
 
setRoi(Roi) - Method in class ome.model.roi.Shape
 
setRoiLinks(Set<FolderRoiLink>) - Method in class ome.model.containers.Folder
setter for roiLinks should be avoided.
setRoiLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.containers.Folder
 
setRois(Set<Roi>) - Method in class ome.model.core.Image
setter for rois should be avoided.
setRoles(long, long, long, long, long) - Method in class ome.util.SqlAction.Impl
 
setRoles(long, long, long, long, long) - Method in interface ome.util.SqlAction
Note the roles in the database.
setRow(Integer) - Method in class ome.model.screen.Well
 
setRowNamingConvention(String) - Method in class ome.model.screen.Plate
 
setRows(Integer) - Method in class ome.model.screen.Plate
 
setSamplesPerPixel(Integer) - Method in class ome.model.core.LogicalChannel
 
setScale(Integer) - Method in class ome.model.meta.Node
 
setScheduledFor(Timestamp) - Method in class ome.model.jobs.Job
 
setScreen(Screen) - Method in class ome.model.screen.Reagent
 
setScreenLinks(Set<ScreenPlateLink>) - Method in class ome.model.screen.Plate
setter for screenLinks should be avoided.
setScreenLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Plate
 
setSerialNumber(String) - Method in class ome.model.acquisition.Detector
 
setSerialNumber(String) - Method in class ome.model.acquisition.Dichroic
 
setSerialNumber(String) - Method in class ome.model.acquisition.Filter
 
setSerialNumber(String) - Method in class ome.model.acquisition.FilterSet
 
setSerialNumber(String) - Method in class ome.model.acquisition.LightSource
 
setSerialNumber(String) - Method in class ome.model.acquisition.Microscope
 
setSerialNumber(String) - Method in class ome.model.acquisition.Objective
 
setSeries(Integer) - Method in class ome.model.core.Image
 
setSession(Session) - Method in class ome.model.meta.Event
 
setSessions(Set<Session>) - Method in class ome.model.meta.Node
setter for sessions should be avoided.
setSettings(Set<RenderingDef>) - Method in class ome.model.core.Pixels
setter for settings should be avoided.
setSha1(String) - Method in class ome.model.core.Pixels
 
setShape(int, Shape) - Method in class ome.model.roi.Roi
Sets the ome.model.roi.Shape at the given index.
setShapes(List<Shape>) - Method in class ome.model.roi.Roi
setter for shapes should be avoided.
setSignificantBits(Integer) - Method in class ome.model.core.Pixels
 
setSize(Long) - Method in class ome.model.core.OriginalFile
 
setSizeC(Integer) - Method in class ome.model.core.Pixels
 
setSizeT(Integer) - Method in class ome.model.core.Pixels
 
setSizeX(Integer) - Method in class ome.model.acquisition.OTF
 
setSizeX(Integer) - Method in class ome.model.core.Pixels
 
setSizeX(Integer) - Method in class ome.model.display.Thumbnail
 
setSizeY(Integer) - Method in class ome.model.acquisition.OTF
 
setSizeY(Integer) - Method in class ome.model.core.Pixels
 
setSizeY(Integer) - Method in class ome.model.display.Thumbnail
 
setSizeZ(Integer) - Method in class ome.model.core.Pixels
 
setSource(OriginalFile) - Method in class ome.model.roi.Roi
 
setSpatialDomainEnhancement(List<CodomainMapContext>) - Method in class ome.model.display.ChannelBinding
setter for spatialDomainEnhancement should be avoided.
setSqlAction(SqlAction) - Method in class ome.util.TableIdGenerator
 
setStageLabel(StageLabel) - Method in class ome.model.core.Image
 
setStarted(Timestamp) - Method in class ome.model.jobs.Job
 
setStarted(Timestamp) - Method in class ome.model.meta.Session
 
setStartPlane(Integer) - Method in class ome.model.display.ProjectionDef
 
setStartTime(Timestamp) - Method in class ome.model.screen.PlateAcquisition
 
setStatsInfo(StatsInfo) - Method in class ome.model.core.Channel
 
setStatsInfo(Channel, StatsInfo) - Method in class ome.util.SqlAction.Impl
 
setStatsInfo(Channel, StatsInfo) - Method in interface ome.util.SqlAction
 
setStatus(JobStatus) - Method in class ome.model.jobs.Job
 
setStatus(String) - Method in class ome.model.meta.Event
 
setStatus(String) - Method in class ome.model.screen.Plate
 
setStatus(String) - Method in class ome.model.screen.Well
 
setStepping(Integer) - Method in class ome.model.display.ProjectionDef
 
setStrokeColor(Integer) - Method in class ome.model.roi.Shape
 
setStrokeDashArray(String) - Method in class ome.model.roi.Shape
 
setStrokeWidth(Length) - Method in class ome.model.roi.Shape
 
setSubmitted(Timestamp) - Method in class ome.model.jobs.Job
 
setSudoer(Experimenter) - Method in class ome.model.meta.Session
 
setTemperature(Temperature) - Method in class ome.model.acquisition.ImagingEnvironment
 
setTemplatePrefix(String) - Method in class ome.model.fs.Fileset
 
setTermValue(String) - Method in class ome.model.annotations.TermAnnotation
 
setTextValue(String) - Method in class ome.model.annotations.TextAnnotation
 
setTextValue(String) - Method in class ome.model.roi.Ellipse
 
setTextValue(String) - Method in class ome.model.roi.Label
 
setTextValue(String) - Method in class ome.model.roi.Line
 
setTextValue(String) - Method in class ome.model.roi.Mask
 
setTextValue(String) - Method in class ome.model.roi.Path
Deprecated.
 
setTextValue(String) - Method in class ome.model.roi.Point
 
setTextValue(String) - Method in class ome.model.roi.Polygon
 
setTextValue(String) - Method in class ome.model.roi.Polyline
 
setTextValue(String) - Method in class ome.model.roi.Rectangle
 
setTheC(Integer) - Method in class ome.model.core.PlaneInfo
 
setTheC(Integer) - Method in class ome.model.roi.Shape
 
setTheT(Integer) - Method in class ome.model.core.PlaneInfo
 
setTheT(Integer) - Method in class ome.model.roi.Shape
 
setTheZ(Integer) - Method in class ome.model.core.PlaneInfo
 
setTheZ(Integer) - Method in class ome.model.roi.Shape
 
setThumbnails(Set<Thumbnail>) - Method in class ome.model.core.Pixels
setter for thumbnails should be avoided.
setTime(Timestamp) - Method in class ome.model.meta.Event
 
setTimeIncrement(Time) - Method in class ome.model.core.Pixels
 
setTimepoint(Timestamp) - Method in class ome.model.screen.WellSample
 
setTimeToIdle(Long) - Method in class ome.model.meta.Session
 
setTimeToLive(Long) - Method in class ome.model.meta.Session
 
setTimeValue(Timestamp) - Method in class ome.model.annotations.TimestampAnnotation
 
settings - Variable in class ome.model.core.Pixels
 
SETTINGS - Static variable in class ome.model.core.Pixels
 
setToken(Token, Token) - Method in class ome.model.internal.GraphHolder
set the Token for this GraphHolder but only if you posses the current Token.
setTransform(AffineTransform) - Method in class ome.model.roi.Shape
 
setTransmittance(Double) - Method in class ome.model.acquisition.TransmittanceRange
 
setTransmittanceRange(TransmittanceRange) - Method in class ome.model.acquisition.Filter
 
setTuneable(Boolean) - Method in class ome.model.acquisition.Laser
 
setType(ArcType) - Method in class ome.model.acquisition.Arc
 
setType(DetectorType) - Method in class ome.model.acquisition.Detector
 
setType(FilamentType) - Method in class ome.model.acquisition.Filament
 
setType(FilterType) - Method in class ome.model.acquisition.Filter
 
setType(LaserType) - Method in class ome.model.acquisition.Laser
 
setType(MicroscopeType) - Method in class ome.model.acquisition.Microscope
 
setType(ProjectionType) - Method in class ome.model.display.ProjectionDef
 
setType(ExperimentType) - Method in class ome.model.experiment.Experiment
 
setType(MicrobeamManipulationType) - Method in class ome.model.experiment.MicrobeamManipulation
 
setType(String) - Method in class ome.model.jobs.Job
 
setType(EventType) - Method in class ome.model.meta.Event
 
setType(String) - Method in class ome.model.screen.Screen
 
setType(String) - Method in class ome.model.screen.Well
 
setUnit(UnitsElectricPotential) - Method in class ome.model.units.ElectricPotential
 
setUnit(UnitsFrequency) - Method in class ome.model.units.Frequency
 
setUnit(UnitsLength) - Method in class ome.model.units.Length
 
setUnit(UnitsPower) - Method in class ome.model.units.Power
 
setUnit(UnitsPressure) - Method in class ome.model.units.Pressure
 
setUnit(UnitsTemperature) - Method in class ome.model.units.Temperature
 
setUnit(UnitsTime) - Method in class ome.model.units.Time
 
setUp(Timestamp) - Method in class ome.model.meta.Node
 
setUpdateEvent(Event) - Method in class ome.model.internal.Details
 
setUpdateEvent(Event) - Method in class ome.model.meta.ExternalInfo.Details
 
setUpperLimit(Integer) - Method in class ome.model.display.PlaneSlicingContext
 
setUsedFiles(List<FilesetEntry>) - Method in class ome.model.fs.Fileset
setter for usedFiles should be avoided.
setUserAgent(String) - Method in class ome.model.meta.Session
 
setUserIP(String) - Method in class ome.model.meta.Session
 
setUsername(String) - Method in class ome.model.jobs.Job
 
setUserPassword(Long, String) - Method in class ome.util.SqlAction.Impl
 
setUserPassword(Long, String) - Method in interface ome.util.SqlAction
 
setUuid(String) - Method in class ome.model.meta.ExternalInfo
 
setUuid(String) - Method in class ome.model.meta.Node
 
setUuid(String) - Method in class ome.model.meta.Session
 
setValue(String) - Method in class ome.model.enums.AcquisitionMode
 
setValue(String) - Method in class ome.model.enums.AdminPrivilege
 
setValue(String) - Method in class ome.model.enums.ArcType
 
setValue(String) - Method in class ome.model.enums.Binning
 
setValue(String) - Method in class ome.model.enums.ChecksumAlgorithm
 
setValue(String) - Method in class ome.model.enums.ContrastMethod
 
setValue(String) - Method in class ome.model.enums.Correction
 
setValue(String) - Method in class ome.model.enums.DetectorType
 
setValue(String) - Method in class ome.model.enums.DimensionOrder
 
setValue(String) - Method in class ome.model.enums.EventType
 
setValue(String) - Method in class ome.model.enums.ExperimentType
 
setValue(String) - Method in class ome.model.enums.Family
 
setValue(String) - Method in class ome.model.enums.FilamentType
 
setValue(String) - Method in class ome.model.enums.FilterType
 
setValue(String) - Method in class ome.model.enums.Format
 
setValue(String) - Method in class ome.model.enums.Illumination
 
setValue(String) - Method in class ome.model.enums.Immersion
 
setValue(String) - Method in class ome.model.enums.LaserMedium
 
setValue(String) - Method in class ome.model.enums.LaserType
 
setValue(String) - Method in class ome.model.enums.Medium
 
setValue(String) - Method in class ome.model.enums.MicrobeamManipulationType
 
setValue(String) - Method in class ome.model.enums.MicroscopeType
 
setValue(String) - Method in class ome.model.enums.PhotometricInterpretation
 
setValue(String) - Method in class ome.model.enums.PixelsType
 
setValue(String) - Method in class ome.model.enums.ProjectionAxis
 
setValue(String) - Method in class ome.model.enums.ProjectionType
 
setValue(String) - Method in class ome.model.enums.Pulse
 
setValue(String) - Method in class ome.model.enums.RenderingModel
 
setValue(String) - Method in class ome.model.internal.NamedValue
 
setValue(String) - Method in class ome.model.jobs.JobStatus
 
setValue(double) - Method in class ome.model.units.ElectricPotential
 
setValue(double) - Method in class ome.model.units.Frequency
 
setValue(double) - Method in class ome.model.units.Length
 
setValue(double) - Method in class ome.model.units.Power
 
setValue(double) - Method in class ome.model.units.Pressure
 
setValue(double) - Method in class ome.model.units.Temperature
 
setValue(double) - Method in class ome.model.units.Time
 
setValue(double) - Method in interface ome.model.units.Unit
 
setVersion(Integer) - Method in class ome.model.acquisition.Detector
 
setVersion(Integer) - Method in class ome.model.acquisition.DetectorSettings
 
setVersion(Integer) - Method in class ome.model.acquisition.Dichroic
 
setVersion(Integer) - Method in class ome.model.acquisition.Filter
 
setVersion(Integer) - Method in class ome.model.acquisition.FilterSet
 
setVersion(Integer) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
setVersion(Integer) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
setVersion(Integer) - Method in class ome.model.acquisition.ImagingEnvironment
 
setVersion(Integer) - Method in class ome.model.acquisition.Instrument
 
setVersion(Integer) - Method in class ome.model.acquisition.LightPath
 
setVersion(Integer) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
setVersion(Integer) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
setVersion(Integer) - Method in class ome.model.acquisition.LightSettings
 
setVersion(Integer) - Method in class ome.model.acquisition.LightSource
 
setVersion(Integer) - Method in class ome.model.acquisition.Microscope
 
setVersion(Integer) - Method in class ome.model.acquisition.Objective
 
setVersion(Integer) - Method in class ome.model.acquisition.ObjectiveSettings
 
setVersion(Integer) - Method in class ome.model.acquisition.OTF
 
setVersion(Integer) - Method in class ome.model.acquisition.StageLabel
 
setVersion(Integer) - Method in class ome.model.acquisition.TransmittanceRange
 
setVersion(Integer) - Method in class ome.model.annotations.Annotation
 
setVersion(Integer) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.ChannelAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.DatasetAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.DetectorAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.DichroicAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.FilesetAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.FilterAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.FolderAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.ImageAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.LightPathAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.NodeAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.PlateAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.ProjectAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.ReagentAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.RoiAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.ScreenAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.SessionAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.ShapeAnnotationLink
 
setVersion(Integer) - Method in class ome.model.annotations.WellAnnotationLink
 
setVersion(Integer) - Method in class ome.model.containers.Dataset
 
setVersion(Integer) - Method in class ome.model.containers.DatasetImageLink
 
setVersion(Integer) - Method in class ome.model.containers.Folder
 
setVersion(Integer) - Method in class ome.model.containers.FolderImageLink
 
setVersion(Integer) - Method in class ome.model.containers.FolderRoiLink
 
setVersion(Integer) - Method in class ome.model.containers.Project
 
setVersion(Integer) - Method in class ome.model.containers.ProjectDatasetLink
 
setVersion(Integer) - Method in class ome.model.core.Channel
 
setVersion(Integer) - Method in class ome.model.core.Image
 
setVersion(Integer) - Method in class ome.model.core.LogicalChannel
 
setVersion(Integer) - Method in class ome.model.core.OriginalFile
 
setVersion(Integer) - Method in class ome.model.core.Pixels
 
setVersion(Integer) - Method in class ome.model.core.PixelsOriginalFileMap
 
setVersion(Integer) - Method in class ome.model.core.PlaneInfo
 
setVersion(Integer) - Method in class ome.model.display.ChannelBinding
 
setVersion(Integer) - Method in class ome.model.display.CodomainMapContext
 
setVersion(Integer) - Method in class ome.model.display.ProjectionDef
 
setVersion(Integer) - Method in class ome.model.display.QuantumDef
 
setVersion(Integer) - Method in class ome.model.display.RenderingDef
 
setVersion(Integer) - Method in class ome.model.display.Thumbnail
 
setVersion(Integer) - Method in class ome.model.experiment.Experiment
 
setVersion(Integer) - Method in class ome.model.experiment.MicrobeamManipulation
 
setVersion(Integer) - Method in class ome.model.fs.Fileset
 
setVersion(Integer) - Method in class ome.model.fs.FilesetEntry
 
setVersion(Integer) - Method in class ome.model.fs.FilesetJobLink
 
setVersion(Integer) - Method in interface ome.model.IMutable
use with caution.
setVersion(Integer) - Method in class ome.model.internal.Link
 
setVersion(Integer) - Method in class ome.model.jobs.Job
 
setVersion(Integer) - Method in class ome.model.jobs.JobOriginalFileLink
 
setVersion(Integer) - Method in class ome.model.meta.Experimenter
 
setVersion(Integer) - Method in class ome.model.meta.ExperimenterGroup
 
setVersion(Integer) - Method in class ome.model.meta.GroupExperimenterMap
 
setVersion(Integer) - Method in class ome.model.meta.Namespace
 
setVersion(Integer) - Method in class ome.model.meta.Node
 
setVersion(Integer) - Method in class ome.model.meta.Session
 
setVersion(Integer) - Method in class ome.model.meta.ShareMember
 
setVersion(Integer) - Method in class ome.model.roi.AffineTransform
 
setVersion(Integer) - Method in class ome.model.roi.Roi
 
setVersion(Integer) - Method in class ome.model.roi.Shape
 
setVersion(Integer) - Method in class ome.model.screen.Plate
 
setVersion(Integer) - Method in class ome.model.screen.PlateAcquisition
 
setVersion(Integer) - Method in class ome.model.screen.Reagent
 
setVersion(Integer) - Method in class ome.model.screen.Screen
 
setVersion(Integer) - Method in class ome.model.screen.ScreenPlateLink
 
setVersion(Integer) - Method in class ome.model.screen.Well
 
setVersion(Integer) - Method in class ome.model.screen.WellReagentLink
 
setVersion(Integer) - Method in class ome.model.screen.WellSample
 
setVersion(Integer) - Method in class ome.model.stats.StatsInfo
 
setVersionInfo(List<NamedValue>) - Method in class ome.model.jobs.MetadataImportJob
 
setVersionInfo(List<NamedValue>) - Method in class ome.model.jobs.UploadJob
 
setVoltage(ElectricPotential) - Method in class ome.model.acquisition.Detector
 
setVoltage(ElectricPotential) - Method in class ome.model.acquisition.DetectorSettings
 
setWaveIncrement(Integer) - Method in class ome.model.core.Pixels
 
setWavelength(Length) - Method in class ome.model.acquisition.Laser
 
setWavelength(Length) - Method in class ome.model.acquisition.LightSettings
 
setWaveRendering(List<ChannelBinding>) - Method in class ome.model.display.RenderingDef
setter for waveRendering should be avoided.
setWaveStart(Integer) - Method in class ome.model.core.Pixels
 
setWell(Well) - Method in class ome.model.screen.WellSample
 
setWellLinks(Set<WellReagentLink>) - Method in class ome.model.screen.Reagent
setter for wellLinks should be avoided.
setWellLinksCountPerOwner(Map<Long, Long>) - Method in class ome.model.screen.Reagent
 
setWellOriginX(Length) - Method in class ome.model.screen.Plate
 
setWellOriginY(Length) - Method in class ome.model.screen.Plate
 
setWells(Set<Well>) - Method in class ome.model.screen.Plate
setter for wells should be avoided.
setWellSample(Set<WellSample>) - Method in class ome.model.screen.PlateAcquisition
setter for wellSample should be avoided.
setWellSample(int, WellSample) - Method in class ome.model.screen.Well
Sets the ome.model.screen.WellSample at the given index.
setWellSamples(Set<WellSample>) - Method in class ome.model.core.Image
setter for wellSamples should be avoided.
setWellSamples(List<WellSample>) - Method in class ome.model.screen.Well
setter for wellSamples should be avoided.
setWidth(Double) - Method in class ome.model.roi.Mask
 
setWidth(Double) - Method in class ome.model.roi.Rectangle
 
setWorkingDistance(Length) - Method in class ome.model.acquisition.Objective
 
setX(Double) - Method in class ome.model.roi.Ellipse
 
setX(Double) - Method in class ome.model.roi.Label
 
setX(Double) - Method in class ome.model.roi.Mask
 
setX(Double) - Method in class ome.model.roi.Point
 
setX(Double) - Method in class ome.model.roi.Rectangle
 
setX1(Double) - Method in class ome.model.roi.Line
 
setX2(Double) - Method in class ome.model.roi.Line
 
setXend(Integer) - Method in class ome.model.display.ContrastStretchingContext
 
setXstart(Integer) - Method in class ome.model.display.ContrastStretchingContext
 
setY(Double) - Method in class ome.model.roi.Ellipse
 
setY(Double) - Method in class ome.model.roi.Label
 
setY(Double) - Method in class ome.model.roi.Mask
 
setY(Double) - Method in class ome.model.roi.Point
 
setY(Double) - Method in class ome.model.roi.Rectangle
 
setY1(Double) - Method in class ome.model.roi.Line
 
setY2(Double) - Method in class ome.model.roi.Line
 
setYend(Integer) - Method in class ome.model.display.ContrastStretchingContext
 
setYstart(Integer) - Method in class ome.model.display.ContrastStretchingContext
 
setZoom(Double) - Method in class ome.model.acquisition.Detector
 
setZoom(Double) - Method in class ome.model.acquisition.DetectorSettings
 
sha1 - Variable in class ome.model.core.Pixels
 
SHA1 - Static variable in class ome.model.core.Pixels
 
shallowCopy() - Method in class ome.model.internal.Details
 
shallowCopy(Details) - Method in class ome.model.internal.Details
Method which takes all the fields of the given Details instance and sets unloaded proxies of them into the current instance.
ShallowCopy - Class in ome.util
 
ShallowCopy() - Constructor for class ome.util.ShallowCopy
 
Shape - Class in ome.model.roi
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Shape() - Constructor for class ome.model.roi.Shape
 
Shape(Long) - Constructor for class ome.model.roi.Shape
 
Shape(Long, boolean) - Constructor for class ome.model.roi.Shape
Main constructor.
Shape(Roi) - Constructor for class ome.model.roi.Shape
 
Shape.Details - Class in ome.model.roi
 
ShapeAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
ShapeAnnotationLink() - Constructor for class ome.model.annotations.ShapeAnnotationLink
 
ShapeAnnotationLink(Long) - Constructor for class ome.model.annotations.ShapeAnnotationLink
 
ShapeAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.ShapeAnnotationLink
Main constructor.
ShapeAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.ShapeAnnotationLink
 
ShapeAnnotationLink.Details - Class in ome.model.annotations
 
shapes - Variable in class ome.model.roi.Roi
 
SHAPES - Static variable in class ome.model.roi.Roi
 
Share - Class in ome.model.meta
 
Share() - Constructor for class ome.model.meta.Share
 
Share(Long) - Constructor for class ome.model.meta.Share
 
Share(Long, boolean) - Constructor for class ome.model.meta.Share
Main constructor.
Share(ExperimenterGroup, Long, Boolean, byte[]) - Constructor for class ome.model.meta.Share
 
ShareMember - Class in ome.model.meta
 
ShareMember() - Constructor for class ome.model.meta.ShareMember
 
ShareMember(Long) - Constructor for class ome.model.meta.ShareMember
 
ShareMember(Long, boolean) - Constructor for class ome.model.meta.ShareMember
Main constructor.
ShareMember(IObject, IObject) - Constructor for class ome.model.meta.ShareMember
 
ShareMember.Details - Class in ome.model.meta
 
SHORT - Static variable in class ome.util.PixelData
Identifies the type used to store pixel values.
significantBits - Variable in class ome.model.core.Pixels
 
SIGNIFICANTBITS - Static variable in class ome.model.core.Pixels
 
singleBitOn(Permissions.Role, Permissions.Right) - Static method in class ome.model.internal.Permissions
returns a long with only a single 1 defined by role/right
singleBitOut(Permissions.Role, Permissions.Right) - Static method in class ome.model.internal.Permissions
returns a long with only a single 0 defined by role/right
size - Variable in class ome.model.core.OriginalFile
 
SIZE - Static variable in class ome.model.core.OriginalFile
 
size() - Method in class ome.util.PixelData
Returns the pixel count of this block of pixel data.
sizeC - Variable in class ome.model.core.Pixels
 
SIZEC - Static variable in class ome.model.core.Pixels
 
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Detector
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Dichroic
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Filter
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Instrument
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.LightPath
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.LightSource
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.acquisition.Objective
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.annotations.Annotation
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.containers.Dataset
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.containers.Folder
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.containers.Project
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.core.Channel
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.core.Image
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.core.OriginalFile
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.core.PlaneInfo
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.fs.Fileset
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in interface ome.model.IAnnotated
 
sizeOfAnnotationLinks() - Method in class ome.model.meta.Experimenter
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.meta.Namespace
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.meta.Node
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.meta.Session
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.roi.Roi
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.roi.Shape
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.screen.Plate
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.screen.Reagent
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.screen.Screen
returns the size of annotationLinks.
sizeOfAnnotationLinks() - Method in class ome.model.screen.Well
returns the size of annotationLinks.
sizeOfChannels() - Method in class ome.model.core.LogicalChannel
returns the size of channels.
sizeOfChannels() - Method in class ome.model.core.Pixels
returns the size of channels.
sizeOfChildFolders() - Method in class ome.model.containers.Folder
returns the size of childFolders.
sizeOfDatasetLinks() - Method in class ome.model.containers.Project
returns the size of datasetLinks.
sizeOfDatasetLinks() - Method in class ome.model.core.Image
returns the size of datasetLinks.
sizeOfDetector() - Method in class ome.model.acquisition.Instrument
returns the size of detector.
sizeOfDichroic() - Method in class ome.model.acquisition.Instrument
returns the size of dichroic.
sizeOfEmissionFilterLink() - Method in class ome.model.acquisition.Filter
returns the size of emissionFilterLink.
sizeOfEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet
returns the size of emissionFilterLink.
sizeOfEmissionFilterLink() - Method in class ome.model.acquisition.LightPath
returns the size of emissionFilterLink.
sizeOfEvents() - Method in class ome.model.meta.Session
returns the size of events.
sizeOfExcitationFilterLink() - Method in class ome.model.acquisition.Filter
returns the size of excitationFilterLink.
sizeOfExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet
returns the size of excitationFilterLink.
sizeOfExcitationFilterLink() - Method in class ome.model.acquisition.LightPath
returns the size of excitationFilterLink.
sizeOfFilesetEntries() - Method in class ome.model.core.OriginalFile
returns the size of filesetEntries.
sizeOfFilter() - Method in class ome.model.acquisition.Instrument
returns the size of filter.
sizeOfFilterSet() - Method in class ome.model.acquisition.Instrument
returns the size of filterSet.
sizeOfFolderLinks() - Method in class ome.model.core.Image
returns the size of folderLinks.
sizeOfFolderLinks() - Method in class ome.model.roi.Roi
returns the size of folderLinks.
sizeOfGroupExperimenterMap() - Method in class ome.model.meta.Experimenter
returns the size of groupExperimenterMap.
sizeOfGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup
returns the size of groupExperimenterMap.
sizeOfImageLinks() - Method in class ome.model.containers.Dataset
returns the size of imageLinks.
sizeOfImageLinks() - Method in class ome.model.containers.Folder
returns the size of imageLinks.
sizeOfImages() - Method in class ome.model.fs.Fileset
returns the size of images.
sizeOfJobLinks() - Method in class ome.model.fs.Fileset
returns the size of jobLinks.
sizeOfLightSource() - Method in class ome.model.acquisition.Instrument
returns the size of lightSource.
sizeOfLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation
returns the size of lightSourceSettings.
sizeOfLogs() - Method in class ome.model.meta.Event
returns the size of logs.
sizeOfMicrobeamManipulation() - Method in class ome.model.experiment.Experiment
returns the size of microbeamManipulation.
sizeOfObjective() - Method in class ome.model.acquisition.Instrument
returns the size of objective.
sizeOfOriginalFileLinks() - Method in class ome.model.jobs.Job
returns the size of originalFileLinks.
sizeOfOtf() - Method in class ome.model.acquisition.Instrument
returns the size of otf.
sizeOfPixels() - Method in class ome.model.core.Image
returns the size of pixels.
sizeOfPixelsFileMaps() - Method in class ome.model.core.OriginalFile
returns the size of pixelsFileMaps.
sizeOfPixelsFileMaps() - Method in class ome.model.core.Pixels
returns the size of pixelsFileMaps.
sizeOfPlaneInfo() - Method in class ome.model.core.Pixels
returns the size of planeInfo.
sizeOfPlateAcquisitions() - Method in class ome.model.screen.Plate
returns the size of plateAcquisitions.
sizeOfPlateLinks() - Method in class ome.model.screen.Screen
returns the size of plateLinks.
sizeOfProjections() - Method in class ome.model.display.RenderingDef
returns the size of projections.
sizeOfProjectLinks() - Method in class ome.model.containers.Dataset
returns the size of projectLinks.
sizeOfReagentLinks() - Method in class ome.model.screen.Well
returns the size of reagentLinks.
sizeOfReagents() - Method in class ome.model.screen.Screen
returns the size of reagents.
sizeOfRoiLinks() - Method in class ome.model.containers.Folder
returns the size of roiLinks.
sizeOfRois() - Method in class ome.model.core.Image
returns the size of rois.
sizeOfScreenLinks() - Method in class ome.model.screen.Plate
returns the size of screenLinks.
sizeOfSessions() - Method in class ome.model.meta.Node
returns the size of sessions.
sizeOfSettings() - Method in class ome.model.core.Pixels
returns the size of settings.
sizeOfShapes() - Method in class ome.model.roi.Roi
returns the size of shapes.
sizeOfSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding
returns the size of spatialDomainEnhancement.
sizeOfThumbnails() - Method in class ome.model.core.Pixels
returns the size of thumbnails.
sizeOfUsedFiles() - Method in class ome.model.fs.Fileset
returns the size of usedFiles.
sizeOfWaveRendering() - Method in class ome.model.display.RenderingDef
returns the size of waveRendering.
sizeOfWellLinks() - Method in class ome.model.screen.Reagent
returns the size of wellLinks.
sizeOfWells() - Method in class ome.model.screen.Plate
returns the size of wells.
sizeOfWellSample() - Method in class ome.model.screen.PlateAcquisition
returns the size of wellSample.
sizeOfWellSamples() - Method in class ome.model.core.Image
returns the size of wellSamples.
sizeOfWellSamples() - Method in class ome.model.screen.Well
returns the size of wellSamples.
sizeT - Variable in class ome.model.core.Pixels
 
SIZET - Static variable in class ome.model.core.Pixels
 
sizeX - Variable in class ome.model.acquisition.OTF
 
SIZEX - Static variable in class ome.model.acquisition.OTF
 
sizeX - Variable in class ome.model.core.Pixels
 
SIZEX - Static variable in class ome.model.core.Pixels
 
sizeX - Variable in class ome.model.display.Thumbnail
 
SIZEX - Static variable in class ome.model.display.Thumbnail
 
sizeY - Variable in class ome.model.acquisition.OTF
 
SIZEY - Static variable in class ome.model.acquisition.OTF
 
sizeY - Variable in class ome.model.core.Pixels
 
SIZEY - Static variable in class ome.model.core.Pixels
 
sizeY - Variable in class ome.model.display.Thumbnail
 
SIZEY - Static variable in class ome.model.display.Thumbnail
 
sizeZ - Variable in class ome.model.core.Pixels
 
SIZEZ - Static variable in class ome.model.core.Pixels
 
source - Variable in class ome.model.roi.Roi
 
SOURCE - Static variable in class ome.model.roi.Roi
 
spatialDomainEnhancement - Variable in class ome.model.display.ChannelBinding
 
SPATIALDOMAINENHANCEMENT - Static variable in class ome.model.display.ChannelBinding
 
SqlAction - Interface in ome.util
Single wrapper for all JDBC activities.
SqlAction.DeleteLog - Class in ome.util
Record-class which matches _fs_deletelog.
SqlAction.IdRowMapper - Class in ome.util
 
SqlAction.Impl - Class in ome.util
Base implementation which can be used
SqlAction.LoggingSqlAction - Class in ome.util
 
SqlAction.StringRowMapper - Class in ome.util
 
sqlTypes() - Method in class ome.model.units.GenericEnumType
 
stackAsString(Throwable) - Static method in class ome.util.ModelMapper
 
StageLabel - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
StageLabel() - Constructor for class ome.model.acquisition.StageLabel
 
StageLabel(Long) - Constructor for class ome.model.acquisition.StageLabel
 
StageLabel(Long, boolean) - Constructor for class ome.model.acquisition.StageLabel
Main constructor.
StageLabel(String) - Constructor for class ome.model.acquisition.StageLabel
 
stageLabel - Variable in class ome.model.core.Image
 
STAGELABEL - Static variable in class ome.model.core.Image
 
StageLabel.Details - Class in ome.model.acquisition
 
started - Variable in class ome.model.jobs.Job
 
STARTED - Static variable in class ome.model.jobs.Job
 
started - Variable in class ome.model.meta.Session
 
STARTED - Static variable in class ome.model.meta.Session
 
startPlane - Variable in class ome.model.display.ProjectionDef
 
STARTPLANE - Static variable in class ome.model.display.ProjectionDef
 
startTime - Variable in class ome.model.screen.PlateAcquisition
 
STARTTIME - Static variable in class ome.model.screen.PlateAcquisition
 
startTime - Variable in class ome.parameters.Filter
 
startTime(Timestamp) - Method in class ome.parameters.Parameters
 
statsInfo - Variable in class ome.model.core.Channel
 
STATSINFO - Static variable in class ome.model.core.Channel
 
StatsInfo - Class in ome.model.stats
These filter definitions are used by the security system to eliminate non-readable objects from queries.
StatsInfo() - Constructor for class ome.model.stats.StatsInfo
 
StatsInfo(Long) - Constructor for class ome.model.stats.StatsInfo
 
StatsInfo(Long, boolean) - Constructor for class ome.model.stats.StatsInfo
Main constructor.
StatsInfo(Double, Double) - Constructor for class ome.model.stats.StatsInfo
 
StatsInfo.Details - Class in ome.model.stats
 
status - Variable in class ome.model.jobs.Job
 
STATUS - Static variable in class ome.model.jobs.Job
 
status - Variable in class ome.model.meta.Event
 
STATUS - Static variable in class ome.model.meta.Event
 
status - Variable in class ome.model.screen.Plate
 
STATUS - Static variable in class ome.model.screen.Plate
 
status - Variable in class ome.model.screen.Well
 
STATUS - Static variable in class ome.model.screen.Well
 
stepping - Variable in class ome.model.display.ProjectionDef
 
STEPPING - Static variable in class ome.model.display.ProjectionDef
 
StringRowMapper() - Constructor for class ome.util.SqlAction.StringRowMapper
 
strokeColor - Variable in class ome.model.roi.Shape
 
STROKECOLOR - Static variable in class ome.model.roi.Shape
 
strokeDashArray - Variable in class ome.model.roi.Shape
 
STROKEDASHARRAY - Static variable in class ome.model.roi.Shape
 
strokeWidth - Variable in class ome.model.roi.Shape
 
STROKEWIDTH - Static variable in class ome.model.roi.Shape
 
submitted - Variable in class ome.model.jobs.Job
 
SUBMITTED - Static variable in class ome.model.jobs.Job
 
sudoer - Variable in class ome.model.meta.Session
 
SUDOER - Static variable in class ome.model.meta.Session
 
Sym(String) - Static method in class ome.model.units.Conversion
Static helper for creating Conversion.Sym instances.
Sym(char) - Constructor for class ome.model.units.Conversion.Sym
 
Sym(String) - Constructor for class ome.model.units.Conversion.Sym
 
symbol - Variable in enum ome.model.enums.UnitsElectricPotential
 
symbol - Variable in enum ome.model.enums.UnitsFrequency
 
symbol - Variable in enum ome.model.enums.UnitsLength
 
symbol - Variable in enum ome.model.enums.UnitsPower
 
symbol - Variable in enum ome.model.enums.UnitsPressure
 
symbol - Variable in enum ome.model.enums.UnitsTemperature
 
symbol - Variable in enum ome.model.enums.UnitsTime
 
synchronizeJobs(List<Long>) - Method in class ome.util.actions.PostgresSqlAction
 
synchronizeJobs(List<Long>) - Method in interface ome.util.SqlAction
 

T

TableIdGenerator - Class in ome.util
OMERO-specific id generation strategy.
TableIdGenerator() - Constructor for class ome.util.TableIdGenerator
 
TagAnnotation - Class in ome.model.annotations
 
TagAnnotation() - Constructor for class ome.model.annotations.TagAnnotation
 
TagAnnotation(Long) - Constructor for class ome.model.annotations.TagAnnotation
 
TagAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TagAnnotation
Main constructor.
temperature - Variable in class ome.model.acquisition.ImagingEnvironment
 
TEMPERATURE - Static variable in class ome.model.acquisition.ImagingEnvironment
 
Temperature - Class in ome.model.units
class storing both a Temperature and a unit for that Temperature (e.g.
Temperature() - Constructor for class ome.model.units.Temperature
Deprecated.
Temperature(double, String) - Constructor for class ome.model.units.Temperature
 
Temperature(double, UnitsTemperature) - Constructor for class ome.model.units.Temperature
 
Temperature(double, Unit<Temperature>) - Constructor for class ome.model.units.Temperature
 
Temperature(Temperature) - Constructor for class ome.model.units.Temperature
 
templatePrefix - Variable in class ome.model.fs.Fileset
 
TEMPLATEPREFIX - Static variable in class ome.model.fs.Fileset
 
TermAnnotation - Class in ome.model.annotations
 
TermAnnotation() - Constructor for class ome.model.annotations.TermAnnotation
 
TermAnnotation(Long) - Constructor for class ome.model.annotations.TermAnnotation
 
TermAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TermAnnotation
Main constructor.
termValue - Variable in class ome.model.annotations.TermAnnotation
 
TERMVALUE - Static variable in class ome.model.annotations.TermAnnotation
 
TextAnnotation - Class in ome.model.annotations
 
TextAnnotation() - Constructor for class ome.model.annotations.TextAnnotation
 
TextAnnotation(Long) - Constructor for class ome.model.annotations.TextAnnotation
 
TextAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TextAnnotation
Main constructor.
textValue - Variable in class ome.model.annotations.TextAnnotation
 
TEXTVALUE - Static variable in class ome.model.annotations.TextAnnotation
 
textValue - Variable in class ome.model.roi.Ellipse
 
TEXTVALUE - Static variable in class ome.model.roi.Ellipse
 
textValue - Variable in class ome.model.roi.Label
 
TEXTVALUE - Static variable in class ome.model.roi.Label
 
textValue - Variable in class ome.model.roi.Line
 
TEXTVALUE - Static variable in class ome.model.roi.Line
 
textValue - Variable in class ome.model.roi.Mask
 
TEXTVALUE - Static variable in class ome.model.roi.Mask
 
textValue - Variable in class ome.model.roi.Path
Deprecated.
 
TEXTVALUE - Static variable in class ome.model.roi.Path
Deprecated.
 
textValue - Variable in class ome.model.roi.Point
 
TEXTVALUE - Static variable in class ome.model.roi.Point
 
textValue - Variable in class ome.model.roi.Polygon
 
TEXTVALUE - Static variable in class ome.model.roi.Polygon
 
textValue - Variable in class ome.model.roi.Polyline
 
TEXTVALUE - Static variable in class ome.model.roi.Polyline
 
textValue - Variable in class ome.model.roi.Rectangle
 
TEXTVALUE - Static variable in class ome.model.roi.Rectangle
 
theC - Variable in class ome.model.core.PlaneInfo
 
THEC - Static variable in class ome.model.core.PlaneInfo
 
theC - Variable in class ome.model.roi.Shape
 
THEC - Static variable in class ome.model.roi.Shape
 
theT - Variable in class ome.model.core.PlaneInfo
 
THET - Static variable in class ome.model.core.PlaneInfo
 
theT - Variable in class ome.model.roi.Shape
 
THET - Static variable in class ome.model.roi.Shape
 
theZ - Variable in class ome.model.core.PlaneInfo
 
THEZ - Static variable in class ome.model.core.PlaneInfo
 
theZ - Variable in class ome.model.roi.Shape
 
THEZ - Static variable in class ome.model.roi.Shape
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.Arc
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.Detector
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.DetectorSettings
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.Dichroic
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.Filament
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.Filter
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.FilterSet
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.GenericExcitationSource
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.ImagingEnvironment
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.Instrument
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.Laser
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightEmittingDiode
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightPath
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightSettings
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.LightSource
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.Microscope
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.Objective
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.ObjectiveSettings
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.OTF
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.StageLabel
 
throwNullCollectionException(String) - Method in class ome.model.acquisition.TransmittanceRange
 
throwNullCollectionException(String) - Method in class ome.model.annotations.Annotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.AnnotationAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.BasicAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.BooleanAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.ChannelAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.CommentAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.DatasetAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.DetectorAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.DichroicAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.DoubleAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.FileAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.FilesetAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.FilterAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.FolderAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.ImageAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.InstrumentAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.LightPathAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.LightSourceAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.ListAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.LongAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.MapAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.NamespaceAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.NodeAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.NumericAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.PlateAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.ProjectAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.ReagentAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.RoiAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.ScreenAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.SessionAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.ShapeAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.TagAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.TermAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.TextAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.TimestampAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.TypeAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.annotations.WellAnnotationLink
 
throwNullCollectionException(String) - Method in class ome.model.annotations.XmlAnnotation
 
throwNullCollectionException(String) - Method in class ome.model.containers.Dataset
 
throwNullCollectionException(String) - Method in class ome.model.containers.DatasetImageLink
 
throwNullCollectionException(String) - Method in class ome.model.containers.Folder
 
throwNullCollectionException(String) - Method in class ome.model.containers.FolderImageLink
 
throwNullCollectionException(String) - Method in class ome.model.containers.FolderRoiLink
 
throwNullCollectionException(String) - Method in class ome.model.containers.Project
 
throwNullCollectionException(String) - Method in class ome.model.containers.ProjectDatasetLink
 
throwNullCollectionException(String) - Method in class ome.model.core.Channel
 
throwNullCollectionException(String) - Method in class ome.model.core.Image
 
throwNullCollectionException(String) - Method in class ome.model.core.LogicalChannel
 
throwNullCollectionException(String) - Method in class ome.model.core.OriginalFile
 
throwNullCollectionException(String) - Method in class ome.model.core.Pixels
 
throwNullCollectionException(String) - Method in class ome.model.core.PixelsOriginalFileMap
 
throwNullCollectionException(String) - Method in class ome.model.core.PlaneInfo
 
throwNullCollectionException(String) - Method in class ome.model.display.ChannelBinding
 
throwNullCollectionException(String) - Method in class ome.model.display.CodomainMapContext
 
throwNullCollectionException(String) - Method in class ome.model.display.ContrastStretchingContext
 
throwNullCollectionException(String) - Method in class ome.model.display.PlaneSlicingContext
 
throwNullCollectionException(String) - Method in class ome.model.display.ProjectionDef
 
throwNullCollectionException(String) - Method in class ome.model.display.QuantumDef
 
throwNullCollectionException(String) - Method in class ome.model.display.RenderingDef
 
throwNullCollectionException(String) - Method in class ome.model.display.ReverseIntensityContext
 
throwNullCollectionException(String) - Method in class ome.model.display.Thumbnail
 
throwNullCollectionException(String) - Method in class ome.model.enums.AcquisitionMode
 
throwNullCollectionException(String) - Method in class ome.model.enums.AdminPrivilege
 
throwNullCollectionException(String) - Method in class ome.model.enums.ArcType
 
throwNullCollectionException(String) - Method in class ome.model.enums.Binning
 
throwNullCollectionException(String) - Method in class ome.model.enums.ChecksumAlgorithm
 
throwNullCollectionException(String) - Method in class ome.model.enums.ContrastMethod
 
throwNullCollectionException(String) - Method in class ome.model.enums.Correction
 
throwNullCollectionException(String) - Method in class ome.model.enums.DetectorType
 
throwNullCollectionException(String) - Method in class ome.model.enums.DimensionOrder
 
throwNullCollectionException(String) - Method in class ome.model.enums.EventType
 
throwNullCollectionException(String) - Method in class ome.model.enums.ExperimentType
 
throwNullCollectionException(String) - Method in class ome.model.enums.Family
 
throwNullCollectionException(String) - Method in class ome.model.enums.FilamentType
 
throwNullCollectionException(String) - Method in class ome.model.enums.FilterType
 
throwNullCollectionException(String) - Method in class ome.model.enums.Format
 
throwNullCollectionException(String) - Method in class ome.model.enums.Illumination
 
throwNullCollectionException(String) - Method in class ome.model.enums.Immersion
 
throwNullCollectionException(String) - Method in class ome.model.enums.LaserMedium
 
throwNullCollectionException(String) - Method in class ome.model.enums.LaserType
 
throwNullCollectionException(String) - Method in class ome.model.enums.Medium
 
throwNullCollectionException(String) - Method in class ome.model.enums.MicrobeamManipulationType
 
throwNullCollectionException(String) - Method in class ome.model.enums.MicroscopeType
 
throwNullCollectionException(String) - Method in class ome.model.enums.PhotometricInterpretation
 
throwNullCollectionException(String) - Method in class ome.model.enums.PixelsType
 
throwNullCollectionException(String) - Method in class ome.model.enums.ProjectionAxis
 
throwNullCollectionException(String) - Method in class ome.model.enums.ProjectionType
 
throwNullCollectionException(String) - Method in class ome.model.enums.Pulse
 
throwNullCollectionException(String) - Method in class ome.model.enums.RenderingModel
 
throwNullCollectionException(String) - Method in class ome.model.experiment.Experiment
 
throwNullCollectionException(String) - Method in class ome.model.experiment.MicrobeamManipulation
 
throwNullCollectionException(String) - Method in class ome.model.fs.Fileset
 
throwNullCollectionException(String) - Method in class ome.model.fs.FilesetEntry
 
throwNullCollectionException(String) - Method in class ome.model.fs.FilesetJobLink
 
throwNullCollectionException(String) - Method in class ome.model.internal.Link
 
throwNullCollectionException(String) - Method in class ome.model.jobs.ImportJob
Deprecated.
 
throwNullCollectionException(String) - Method in class ome.model.jobs.IndexingJob
 
throwNullCollectionException(String) - Method in class ome.model.jobs.IntegrityCheckJob
 
throwNullCollectionException(String) - Method in class ome.model.jobs.Job
 
throwNullCollectionException(String) - Method in class ome.model.jobs.JobOriginalFileLink
 
throwNullCollectionException(String) - Method in class ome.model.jobs.JobStatus
 
throwNullCollectionException(String) - Method in class ome.model.jobs.MetadataImportJob
 
throwNullCollectionException(String) - Method in class ome.model.jobs.ParseJob
 
throwNullCollectionException(String) - Method in class ome.model.jobs.PixelDataJob
 
throwNullCollectionException(String) - Method in class ome.model.jobs.ScriptJob
 
throwNullCollectionException(String) - Method in class ome.model.jobs.ThumbnailGenerationJob
 
throwNullCollectionException(String) - Method in class ome.model.jobs.UploadJob
 
throwNullCollectionException(String) - Method in class ome.model.meta.DBPatch
 
throwNullCollectionException(String) - Method in class ome.model.meta.Event
 
throwNullCollectionException(String) - Method in class ome.model.meta.EventLog
 
throwNullCollectionException(String) - Method in class ome.model.meta.Experimenter
 
throwNullCollectionException(String) - Method in class ome.model.meta.ExperimenterGroup
 
throwNullCollectionException(String) - Method in class ome.model.meta.ExternalInfo
 
throwNullCollectionException(String) - Method in class ome.model.meta.GroupExperimenterMap
 
throwNullCollectionException(String) - Method in class ome.model.meta.Namespace
 
throwNullCollectionException(String) - Method in class ome.model.meta.Node
 
throwNullCollectionException(String) - Method in class ome.model.meta.Session
 
throwNullCollectionException(String) - Method in class ome.model.meta.Share
 
throwNullCollectionException(String) - Method in class ome.model.meta.ShareMember
 
throwNullCollectionException(String) - Method in class ome.model.roi.AffineTransform
 
throwNullCollectionException(String) - Method in class ome.model.roi.Ellipse
 
throwNullCollectionException(String) - Method in class ome.model.roi.Label
 
throwNullCollectionException(String) - Method in class ome.model.roi.Line
 
throwNullCollectionException(String) - Method in class ome.model.roi.Mask
 
throwNullCollectionException(String) - Method in class ome.model.roi.Path
Deprecated.
 
throwNullCollectionException(String) - Method in class ome.model.roi.Point
 
throwNullCollectionException(String) - Method in class ome.model.roi.Polygon
 
throwNullCollectionException(String) - Method in class ome.model.roi.Polyline
 
throwNullCollectionException(String) - Method in class ome.model.roi.Rectangle
 
throwNullCollectionException(String) - Method in class ome.model.roi.Roi
 
throwNullCollectionException(String) - Method in class ome.model.roi.Shape
 
throwNullCollectionException(String) - Method in class ome.model.screen.Plate
 
throwNullCollectionException(String) - Method in class ome.model.screen.PlateAcquisition
 
throwNullCollectionException(String) - Method in class ome.model.screen.Reagent
 
throwNullCollectionException(String) - Method in class ome.model.screen.Screen
 
throwNullCollectionException(String) - Method in class ome.model.screen.ScreenPlateLink
 
throwNullCollectionException(String) - Method in class ome.model.screen.Well
 
throwNullCollectionException(String) - Method in class ome.model.screen.WellReagentLink
 
throwNullCollectionException(String) - Method in class ome.model.screen.WellSample
 
throwNullCollectionException(String) - Method in class ome.model.stats.StatsInfo
 
Thumbnail - Class in ome.model.display
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Thumbnail() - Constructor for class ome.model.display.Thumbnail
 
Thumbnail(Long) - Constructor for class ome.model.display.Thumbnail
 
Thumbnail(Long, boolean) - Constructor for class ome.model.display.Thumbnail
Main constructor.
Thumbnail(Pixels, String, Integer, Integer) - Constructor for class ome.model.display.Thumbnail
 
Thumbnail.Details - Class in ome.model.display
 
ThumbnailGenerationJob - Class in ome.model.jobs
 
ThumbnailGenerationJob() - Constructor for class ome.model.jobs.ThumbnailGenerationJob
 
ThumbnailGenerationJob(Long) - Constructor for class ome.model.jobs.ThumbnailGenerationJob
 
ThumbnailGenerationJob(Long, boolean) - Constructor for class ome.model.jobs.ThumbnailGenerationJob
Main constructor.
thumbnails - Variable in class ome.model.core.Pixels
 
THUMBNAILS - Static variable in class ome.model.core.Pixels
 
time - Variable in class ome.model.meta.Event
 
TIME - Static variable in class ome.model.meta.Event
 
Time - Class in ome.model.units
class storing both a Time and a unit for that Time (e.g.
Time() - Constructor for class ome.model.units.Time
Deprecated.
Time(double, String) - Constructor for class ome.model.units.Time
 
Time(double, UnitsTime) - Constructor for class ome.model.units.Time
 
Time(double, Unit<Time>) - Constructor for class ome.model.units.Time
 
Time(Time) - Constructor for class ome.model.units.Time
 
timeIncrement - Variable in class ome.model.core.Pixels
 
TIMEINCREMENT - Static variable in class ome.model.core.Pixels
 
timepoint - Variable in class ome.model.screen.WellSample
 
TIMEPOINT - Static variable in class ome.model.screen.WellSample
 
TimestampAnnotation - Class in ome.model.annotations
 
TimestampAnnotation() - Constructor for class ome.model.annotations.TimestampAnnotation
 
TimestampAnnotation(Long) - Constructor for class ome.model.annotations.TimestampAnnotation
 
TimestampAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TimestampAnnotation
Main constructor.
timeToIdle - Variable in class ome.model.meta.Session
 
TIMETOIDLE - Static variable in class ome.model.meta.Session
 
timeToLive - Variable in class ome.model.meta.Session
 
TIMETOLIVE - Static variable in class ome.model.meta.Session
 
timeValue - Variable in class ome.model.annotations.TimestampAnnotation
 
TIMEVALUE - Static variable in class ome.model.annotations.TimestampAnnotation
 
todbvalue(Object) - Method in enum ome.model.units.UNITS
Map from the CODE-based enums which are used in Java, Ice, etc.
Token - Class in ome.model.internal
authorization token to allow/revoke certain privileges.
Token() - Constructor for class ome.model.internal.Token
 
tokenMatches(Token) - Method in class ome.model.internal.GraphHolder
check the Token for the IObject represented by this GraphHolder.
tokenStream(String, Reader) - Method in class ome.services.fulltext.ConfiguredAnalyzer
 
toPermissions(Object) - Static method in class ome.util.Utils
Returns a Permissions instance from its internal representation.
toString() - Method in class ome.model.acquisition.Arc
 
toString() - Method in class ome.model.acquisition.Detector
 
toString() - Method in class ome.model.acquisition.DetectorSettings
 
toString() - Method in class ome.model.acquisition.Dichroic
 
toString() - Method in class ome.model.acquisition.Filament
 
toString() - Method in class ome.model.acquisition.Filter
 
toString() - Method in class ome.model.acquisition.FilterSet
 
toString() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
toString() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
toString() - Method in class ome.model.acquisition.GenericExcitationSource
 
toString() - Method in class ome.model.acquisition.ImagingEnvironment
 
toString() - Method in class ome.model.acquisition.Instrument
 
toString() - Method in class ome.model.acquisition.Laser
 
toString() - Method in class ome.model.acquisition.LightEmittingDiode
 
toString() - Method in class ome.model.acquisition.LightPath
 
toString() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
toString() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
toString() - Method in class ome.model.acquisition.LightSettings
 
toString() - Method in class ome.model.acquisition.LightSource
 
toString() - Method in class ome.model.acquisition.Microscope
 
toString() - Method in class ome.model.acquisition.Objective
 
toString() - Method in class ome.model.acquisition.ObjectiveSettings
 
toString() - Method in class ome.model.acquisition.OTF
 
toString() - Method in class ome.model.acquisition.StageLabel
 
toString() - Method in class ome.model.acquisition.TransmittanceRange
 
toString() - Method in class ome.model.annotations.Annotation
 
toString() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
toString() - Method in class ome.model.annotations.BasicAnnotation
 
toString() - Method in class ome.model.annotations.BooleanAnnotation
 
toString() - Method in class ome.model.annotations.ChannelAnnotationLink
 
toString() - Method in class ome.model.annotations.CommentAnnotation
 
toString() - Method in class ome.model.annotations.DatasetAnnotationLink
 
toString() - Method in class ome.model.annotations.DetectorAnnotationLink
 
toString() - Method in class ome.model.annotations.DichroicAnnotationLink
 
toString() - Method in class ome.model.annotations.DoubleAnnotation
 
toString() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
toString() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
toString() - Method in class ome.model.annotations.FileAnnotation
 
toString() - Method in class ome.model.annotations.FilesetAnnotationLink
 
toString() - Method in class ome.model.annotations.FilterAnnotationLink
 
toString() - Method in class ome.model.annotations.FolderAnnotationLink
 
toString() - Method in class ome.model.annotations.ImageAnnotationLink
 
toString() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
toString() - Method in class ome.model.annotations.LightPathAnnotationLink
 
toString() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
toString() - Method in class ome.model.annotations.ListAnnotation
 
toString() - Method in class ome.model.annotations.LongAnnotation
 
toString() - Method in class ome.model.annotations.MapAnnotation
 
toString() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
toString() - Method in class ome.model.annotations.NodeAnnotationLink
 
toString() - Method in class ome.model.annotations.NumericAnnotation
 
toString() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
toString() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
toString() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
toString() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
toString() - Method in class ome.model.annotations.PlateAnnotationLink
 
toString() - Method in class ome.model.annotations.ProjectAnnotationLink
 
toString() - Method in class ome.model.annotations.ReagentAnnotationLink
 
toString() - Method in class ome.model.annotations.RoiAnnotationLink
 
toString() - Method in class ome.model.annotations.ScreenAnnotationLink
 
toString() - Method in class ome.model.annotations.SessionAnnotationLink
 
toString() - Method in class ome.model.annotations.ShapeAnnotationLink
 
toString() - Method in class ome.model.annotations.TagAnnotation
 
toString() - Method in class ome.model.annotations.TermAnnotation
 
toString() - Method in class ome.model.annotations.TextAnnotation
 
toString() - Method in class ome.model.annotations.TimestampAnnotation
 
toString() - Method in class ome.model.annotations.TypeAnnotation
 
toString() - Method in class ome.model.annotations.WellAnnotationLink
 
toString() - Method in class ome.model.annotations.XmlAnnotation
 
toString() - Method in class ome.model.containers.Dataset
 
toString() - Method in class ome.model.containers.DatasetImageLink
 
toString() - Method in class ome.model.containers.Folder
 
toString() - Method in class ome.model.containers.FolderImageLink
 
toString() - Method in class ome.model.containers.FolderRoiLink
 
toString() - Method in class ome.model.containers.Project
 
toString() - Method in class ome.model.containers.ProjectDatasetLink
 
toString() - Method in class ome.model.core.Channel
 
toString() - Method in class ome.model.core.Image
 
toString() - Method in class ome.model.core.LogicalChannel
 
toString() - Method in class ome.model.core.OriginalFile
 
toString() - Method in class ome.model.core.Pixels
 
toString() - Method in class ome.model.core.PixelsOriginalFileMap
 
toString() - Method in class ome.model.core.PlaneInfo
 
toString() - Method in class ome.model.display.ChannelBinding
 
toString() - Method in class ome.model.display.CodomainMapContext
 
toString() - Method in class ome.model.display.ContrastStretchingContext
 
toString() - Method in class ome.model.display.PlaneSlicingContext
 
toString() - Method in class ome.model.display.ProjectionDef
 
toString() - Method in class ome.model.display.QuantumDef
 
toString() - Method in class ome.model.display.RenderingDef
 
toString() - Method in class ome.model.display.ReverseIntensityContext
 
toString() - Method in class ome.model.display.Thumbnail
 
toString() - Method in class ome.model.enums.AcquisitionMode
 
toString() - Method in class ome.model.enums.AdminPrivilege
 
toString() - Method in class ome.model.enums.ArcType
 
toString() - Method in class ome.model.enums.Binning
 
toString() - Method in class ome.model.enums.ChecksumAlgorithm
 
toString() - Method in class ome.model.enums.ContrastMethod
 
toString() - Method in class ome.model.enums.Correction
 
toString() - Method in class ome.model.enums.DetectorType
 
toString() - Method in class ome.model.enums.DimensionOrder
 
toString() - Method in class ome.model.enums.EventType
 
toString() - Method in class ome.model.enums.ExperimentType
 
toString() - Method in class ome.model.enums.Family
 
toString() - Method in class ome.model.enums.FilamentType
 
toString() - Method in class ome.model.enums.FilterType
 
toString() - Method in class ome.model.enums.Format
 
toString() - Method in class ome.model.enums.Illumination
 
toString() - Method in class ome.model.enums.Immersion
 
toString() - Method in class ome.model.enums.LaserMedium
 
toString() - Method in class ome.model.enums.LaserType
 
toString() - Method in class ome.model.enums.Medium
 
toString() - Method in class ome.model.enums.MicrobeamManipulationType
 
toString() - Method in class ome.model.enums.MicroscopeType
 
toString() - Method in class ome.model.enums.PhotometricInterpretation
 
toString() - Method in class ome.model.enums.PixelsType
 
toString() - Method in class ome.model.enums.ProjectionAxis
 
toString() - Method in class ome.model.enums.ProjectionType
 
toString() - Method in class ome.model.enums.Pulse
 
toString() - Method in class ome.model.enums.RenderingModel
 
toString() - Method in class ome.model.experiment.Experiment
 
toString() - Method in class ome.model.experiment.MicrobeamManipulation
 
toString() - Method in class ome.model.fs.Fileset
 
toString() - Method in class ome.model.fs.FilesetEntry
 
toString() - Method in class ome.model.fs.FilesetJobLink
 
toString() - Method in class ome.model.internal.Details
simple view of the Details.
toString(StringBuilder) - Method in class ome.model.internal.Details
 
toString() - Method in class ome.model.internal.Link
 
toString() - Method in class ome.model.internal.NamedValue
 
toString() - Method in class ome.model.internal.Permissions
produces a String representation of the Permissions similar to those on a Unix filesystem.
toString() - Method in class ome.model.jobs.ImportJob
Deprecated.
 
toString() - Method in class ome.model.jobs.IndexingJob
 
toString() - Method in class ome.model.jobs.IntegrityCheckJob
 
toString() - Method in class ome.model.jobs.Job
 
toString() - Method in class ome.model.jobs.JobOriginalFileLink
 
toString() - Method in class ome.model.jobs.JobStatus
 
toString() - Method in class ome.model.jobs.MetadataImportJob
 
toString() - Method in class ome.model.jobs.ParseJob
 
toString() - Method in class ome.model.jobs.PixelDataJob
 
toString() - Method in class ome.model.jobs.ScriptJob
 
toString() - Method in class ome.model.jobs.ThumbnailGenerationJob
 
toString() - Method in class ome.model.jobs.UploadJob
 
toString() - Method in class ome.model.meta.DBPatch
 
toString() - Method in class ome.model.meta.Event
 
toString() - Method in class ome.model.meta.EventLog
 
toString() - Method in class ome.model.meta.Experimenter
 
toString() - Method in class ome.model.meta.ExperimenterGroup
 
toString() - Method in class ome.model.meta.ExternalInfo
 
toString() - Method in class ome.model.meta.GroupExperimenterMap
 
toString() - Method in class ome.model.meta.Namespace
 
toString() - Method in class ome.model.meta.Node
 
toString() - Method in class ome.model.meta.Session
 
toString() - Method in class ome.model.meta.Share
 
toString() - Method in class ome.model.meta.ShareMember
 
toString() - Method in class ome.model.roi.AffineTransform
 
toString() - Method in class ome.model.roi.Ellipse
 
toString() - Method in class ome.model.roi.Label
 
toString() - Method in class ome.model.roi.Line
 
toString() - Method in class ome.model.roi.Mask
 
toString() - Method in class ome.model.roi.Path
Deprecated.
 
toString() - Method in class ome.model.roi.Point
 
toString() - Method in class ome.model.roi.Polygon
 
toString() - Method in class ome.model.roi.Polyline
 
toString() - Method in class ome.model.roi.Rectangle
 
toString() - Method in class ome.model.roi.Roi
 
toString() - Method in class ome.model.roi.Shape
 
toString() - Method in class ome.model.screen.Plate
 
toString() - Method in class ome.model.screen.PlateAcquisition
 
toString() - Method in class ome.model.screen.Reagent
 
toString() - Method in class ome.model.screen.Screen
 
toString() - Method in class ome.model.screen.ScreenPlateLink
 
toString() - Method in class ome.model.screen.Well
 
toString() - Method in class ome.model.screen.WellReagentLink
 
toString() - Method in class ome.model.screen.WellSample
 
toString() - Method in class ome.model.stats.StatsInfo
 
toString() - Method in class ome.model.units.ElectricPotential
 
toString() - Method in class ome.model.units.Frequency
 
toString() - Method in class ome.model.units.Length
 
toString() - Method in class ome.model.units.Power
 
toString() - Method in class ome.model.units.Pressure
 
toString() - Method in class ome.model.units.Temperature
 
toString() - Method in class ome.model.units.Time
 
toString() - Method in class ome.parameters.Filter
 
toString() - Method in class ome.parameters.Options
 
toString() - Method in class ome.parameters.Parameters
 
toString() - Method in class ome.parameters.QueryParameter
 
toString() - Method in class ome.util.LSID
 
toString() - Method in class ome.util.SqlAction.DeleteLog
 
transform - Variable in class ome.model.roi.Shape
 
TRANSFORM - Static variable in class ome.model.roi.Shape
 
transmittance - Variable in class ome.model.acquisition.TransmittanceRange
 
TRANSMITTANCE - Static variable in class ome.model.acquisition.TransmittanceRange
 
transmittanceRange - Variable in class ome.model.acquisition.Filter
 
TRANSMITTANCERANGE - Static variable in class ome.model.acquisition.Filter
 
TransmittanceRange - Class in ome.model.acquisition
These filter definitions are used by the security system to eliminate non-readable objects from queries.
TransmittanceRange() - Constructor for class ome.model.acquisition.TransmittanceRange
 
TransmittanceRange(Long) - Constructor for class ome.model.acquisition.TransmittanceRange
 
TransmittanceRange(Long, boolean) - Constructor for class ome.model.acquisition.TransmittanceRange
Main constructor.
TransmittanceRange.Details - Class in ome.model.acquisition
 
trueClass(Class<T>) - Static method in class ome.util.Utils
finds the "true" class identified by a given Class object.
trueInstance(Class<T>) - Static method in class ome.util.Utils
instantiates an object using the trueClass.
TryAgain - Exception in ome.conditions
Background processing necessary to process the request.
TryAgain(String, long) - Constructor for exception ome.conditions.TryAgain
 
tryLock() - Static method in class ome.util.DetailsFieldBridge
 
tuneable - Variable in class ome.model.acquisition.Laser
 
TUNEABLE - Static variable in class ome.model.acquisition.Laser
 
type - Variable in class ome.model.acquisition.Arc
 
TYPE - Static variable in class ome.model.acquisition.Arc
 
type - Variable in class ome.model.acquisition.Detector
 
TYPE - Static variable in class ome.model.acquisition.Detector
 
type - Variable in class ome.model.acquisition.Filament
 
TYPE - Static variable in class ome.model.acquisition.Filament
 
type - Variable in class ome.model.acquisition.Filter
 
TYPE - Static variable in class ome.model.acquisition.Filter
 
type - Variable in class ome.model.acquisition.Laser
 
TYPE - Static variable in class ome.model.acquisition.Laser
 
type - Variable in class ome.model.acquisition.Microscope
 
TYPE - Static variable in class ome.model.acquisition.Microscope
 
type - Variable in class ome.model.display.ProjectionDef
 
TYPE - Static variable in class ome.model.display.ProjectionDef
 
type - Variable in class ome.model.experiment.Experiment
 
TYPE - Static variable in class ome.model.experiment.Experiment
 
type - Variable in class ome.model.experiment.MicrobeamManipulation
 
TYPE - Static variable in class ome.model.experiment.MicrobeamManipulation
 
type - Variable in class ome.model.jobs.Job
 
TYPE - Static variable in class ome.model.jobs.Job
 
type - Variable in class ome.model.meta.Event
 
TYPE - Static variable in class ome.model.meta.Event
 
type - Variable in class ome.model.screen.Screen
 
TYPE - Static variable in class ome.model.screen.Screen
 
type - Variable in class ome.model.screen.Well
 
TYPE - Static variable in class ome.model.screen.Well
 
type - Variable in class ome.parameters.QueryParameter
 
TypeAnnotation - Class in ome.model.annotations
 
TypeAnnotation() - Constructor for class ome.model.annotations.TypeAnnotation
 
TypeAnnotation(Long) - Constructor for class ome.model.annotations.TypeAnnotation
 
TypeAnnotation(Long, boolean) - Constructor for class ome.model.annotations.TypeAnnotation
Main constructor.

U

unique() - Method in class ome.parameters.Filter
state that this Filter should only return a single value if possible.
unique() - Method in class ome.parameters.Parameters
 
UNIT - Static variable in class ome.model.units.ElectricPotential
 
UNIT - Static variable in class ome.model.units.Frequency
 
UNIT - Static variable in class ome.model.units.Length
 
UNIT - Static variable in class ome.model.units.Power
 
UNIT - Static variable in class ome.model.units.Pressure
 
UNIT - Static variable in class ome.model.units.Temperature
 
UNIT - Static variable in class ome.model.units.Time
 
Unit - Interface in ome.model.units
marker interface for all of ome.model.unit types.
UnitEnum - Interface in ome.model.units
marker interface for all of ome.model.unit enums.
UNITS - Enum in ome.model.units
 
UnitsElectricPotential - Enum in ome.model.enums
 
UnitsFrequency - Enum in ome.model.enums
 
UnitsLength - Enum in ome.model.enums
 
UnitsPower - Enum in ome.model.enums
 
UnitsPressure - Enum in ome.model.enums
 
UnitsTemperature - Enum in ome.model.enums
 
UnitsTime - Enum in ome.model.enums
 
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Detector
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Dichroic
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Filter
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Instrument
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.LightPath
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.LightSource
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.acquisition.Objective
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.annotations.Annotation
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.containers.Dataset
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.containers.Folder
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.containers.Project
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.core.Channel
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.core.Image
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.core.OriginalFile
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.core.PlaneInfo
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.fs.Fileset
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in interface ome.model.IAnnotated
 
unlinkAnnotation(Annotation) - Method in class ome.model.meta.Experimenter
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.meta.ExperimenterGroup
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.meta.Namespace
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.meta.Node
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.meta.Session
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.roi.Roi
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.roi.Shape
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.screen.Plate
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.screen.PlateAcquisition
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.screen.Reagent
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.screen.Screen
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkAnnotation(Annotation) - Method in class ome.model.screen.Well
unlinks all ome.model.annotations.Annotation instances from this instance.
unlinkDataset(Dataset) - Method in class ome.model.containers.Project
unlinks all ome.model.containers.Dataset instances from this instance.
unlinkDataset(Dataset) - Method in class ome.model.core.Image
unlinks all ome.model.containers.Dataset instances from this instance.
unlinkEmissionFilter(FilterSet) - Method in class ome.model.acquisition.Filter
unlinks all ome.model.acquisition.FilterSet instances from this instance.
unlinkEmissionFilter(Filter) - Method in class ome.model.acquisition.FilterSet
unlinks all ome.model.acquisition.Filter instances from this instance.
unlinkEmissionFilter(Filter) - Method in class ome.model.acquisition.LightPath
unlinks all ome.model.acquisition.Filter instances from this instance.
unlinkExcitationFilter(FilterSet) - Method in class ome.model.acquisition.Filter
unlinks all ome.model.acquisition.FilterSet instances from this instance.
unlinkExcitationFilter(Filter) - Method in class ome.model.acquisition.FilterSet
unlinks all ome.model.acquisition.Filter instances from this instance.
unlinkExcitationFilter(Filter) - Method in class ome.model.acquisition.LightPath
unlinks all ome.model.acquisition.Filter instances from this instance.
unlinkExperimenter(Experimenter) - Method in class ome.model.meta.ExperimenterGroup
unlinks all ome.model.meta.Experimenter instances from this instance.
unlinkExperimenterGroup(ExperimenterGroup) - Method in class ome.model.meta.Experimenter
unlinks all ome.model.meta.ExperimenterGroup instances from this instance.
unlinkFolder(Folder) - Method in class ome.model.core.Image
unlinks all ome.model.containers.Folder instances from this instance.
unlinkFolder(Folder) - Method in class ome.model.roi.Roi
unlinks all ome.model.containers.Folder instances from this instance.
unlinkImage(Image) - Method in class ome.model.containers.Dataset
unlinks all ome.model.core.Image instances from this instance.
unlinkImage(Image) - Method in class ome.model.containers.Folder
unlinks all ome.model.core.Image instances from this instance.
unlinkJob(Job) - Method in class ome.model.fs.Fileset
unlinks all ome.model.jobs.Job instances from this instance.
unlinkOriginalFile(OriginalFile) - Method in class ome.model.core.Pixels
unlinks all ome.model.core.OriginalFile instances from this instance.
unlinkOriginalFile(OriginalFile) - Method in class ome.model.jobs.Job
unlinks all ome.model.core.OriginalFile instances from this instance.
unlinkPixels(Pixels) - Method in class ome.model.core.OriginalFile
unlinks all ome.model.core.Pixels instances from this instance.
unlinkPlate(Plate) - Method in class ome.model.screen.Screen
unlinks all ome.model.screen.Plate instances from this instance.
unlinkProject(Project) - Method in class ome.model.containers.Dataset
unlinks all ome.model.containers.Project instances from this instance.
unlinkReagent(Reagent) - Method in class ome.model.screen.Well
unlinks all ome.model.screen.Reagent instances from this instance.
unlinkRoi(Roi) - Method in class ome.model.containers.Folder
unlinks all ome.model.roi.Roi instances from this instance.
unlinkScreen(Screen) - Method in class ome.model.screen.Plate
unlinks all ome.model.screen.Screen instances from this instance.
unlinkWell(Well) - Method in class ome.model.screen.Reagent
unlinks all ome.model.screen.Well instances from this instance.
unload() - Method in class ome.model.acquisition.Arc
 
unload() - Method in class ome.model.acquisition.Detector
 
unload() - Method in class ome.model.acquisition.DetectorSettings
 
unload() - Method in class ome.model.acquisition.Dichroic
 
unload() - Method in class ome.model.acquisition.Filament
 
unload() - Method in class ome.model.acquisition.Filter
 
unload() - Method in class ome.model.acquisition.FilterSet
 
unload() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
unload() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
unload() - Method in class ome.model.acquisition.GenericExcitationSource
 
unload() - Method in class ome.model.acquisition.ImagingEnvironment
 
unload() - Method in class ome.model.acquisition.Instrument
 
unload() - Method in class ome.model.acquisition.Laser
 
unload() - Method in class ome.model.acquisition.LightEmittingDiode
 
unload() - Method in class ome.model.acquisition.LightPath
 
unload() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
unload() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
unload() - Method in class ome.model.acquisition.LightSettings
 
unload() - Method in class ome.model.acquisition.LightSource
 
unload() - Method in class ome.model.acquisition.Microscope
 
unload() - Method in class ome.model.acquisition.Objective
 
unload() - Method in class ome.model.acquisition.ObjectiveSettings
 
unload() - Method in class ome.model.acquisition.OTF
 
unload() - Method in class ome.model.acquisition.StageLabel
 
unload() - Method in class ome.model.acquisition.TransmittanceRange
 
unload() - Method in class ome.model.annotations.Annotation
 
unload() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
unload() - Method in class ome.model.annotations.BasicAnnotation
 
unload() - Method in class ome.model.annotations.BooleanAnnotation
 
unload() - Method in class ome.model.annotations.ChannelAnnotationLink
 
unload() - Method in class ome.model.annotations.CommentAnnotation
 
unload() - Method in class ome.model.annotations.DatasetAnnotationLink
 
unload() - Method in class ome.model.annotations.DetectorAnnotationLink
 
unload() - Method in class ome.model.annotations.DichroicAnnotationLink
 
unload() - Method in class ome.model.annotations.DoubleAnnotation
 
unload() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
unload() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
unload() - Method in class ome.model.annotations.FileAnnotation
 
unload() - Method in class ome.model.annotations.FilesetAnnotationLink
 
unload() - Method in class ome.model.annotations.FilterAnnotationLink
 
unload() - Method in class ome.model.annotations.FolderAnnotationLink
 
unload() - Method in class ome.model.annotations.ImageAnnotationLink
 
unload() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
unload() - Method in class ome.model.annotations.LightPathAnnotationLink
 
unload() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
unload() - Method in class ome.model.annotations.ListAnnotation
 
unload() - Method in class ome.model.annotations.LongAnnotation
 
unload() - Method in class ome.model.annotations.MapAnnotation
 
unload() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
unload() - Method in class ome.model.annotations.NodeAnnotationLink
 
unload() - Method in class ome.model.annotations.NumericAnnotation
 
unload() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
unload() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
unload() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
unload() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
unload() - Method in class ome.model.annotations.PlateAnnotationLink
 
unload() - Method in class ome.model.annotations.ProjectAnnotationLink
 
unload() - Method in class ome.model.annotations.ReagentAnnotationLink
 
unload() - Method in class ome.model.annotations.RoiAnnotationLink
 
unload() - Method in class ome.model.annotations.ScreenAnnotationLink
 
unload() - Method in class ome.model.annotations.SessionAnnotationLink
 
unload() - Method in class ome.model.annotations.ShapeAnnotationLink
 
unload() - Method in class ome.model.annotations.TagAnnotation
 
unload() - Method in class ome.model.annotations.TermAnnotation
 
unload() - Method in class ome.model.annotations.TextAnnotation
 
unload() - Method in class ome.model.annotations.TimestampAnnotation
 
unload() - Method in class ome.model.annotations.TypeAnnotation
 
unload() - Method in class ome.model.annotations.WellAnnotationLink
 
unload() - Method in class ome.model.annotations.XmlAnnotation
 
unload() - Method in class ome.model.containers.Dataset
 
unload() - Method in class ome.model.containers.DatasetImageLink
 
unload() - Method in class ome.model.containers.Folder
 
unload() - Method in class ome.model.containers.FolderImageLink
 
unload() - Method in class ome.model.containers.FolderRoiLink
 
unload() - Method in class ome.model.containers.Project
 
unload() - Method in class ome.model.containers.ProjectDatasetLink
 
unload() - Method in class ome.model.core.Channel
 
unload() - Method in class ome.model.core.Image
 
unload() - Method in class ome.model.core.LogicalChannel
 
unload() - Method in class ome.model.core.OriginalFile
 
unload() - Method in class ome.model.core.Pixels
 
unload() - Method in class ome.model.core.PixelsOriginalFileMap
 
unload() - Method in class ome.model.core.PlaneInfo
 
unload() - Method in class ome.model.display.ChannelBinding
 
unload() - Method in class ome.model.display.CodomainMapContext
 
unload() - Method in class ome.model.display.ContrastStretchingContext
 
unload() - Method in class ome.model.display.PlaneSlicingContext
 
unload() - Method in class ome.model.display.ProjectionDef
 
unload() - Method in class ome.model.display.QuantumDef
 
unload() - Method in class ome.model.display.RenderingDef
 
unload() - Method in class ome.model.display.ReverseIntensityContext
 
unload() - Method in class ome.model.display.Thumbnail
 
unload() - Method in class ome.model.enums.AcquisitionMode
 
unload() - Method in class ome.model.enums.AdminPrivilege
 
unload() - Method in class ome.model.enums.ArcType
 
unload() - Method in class ome.model.enums.Binning
 
unload() - Method in class ome.model.enums.ChecksumAlgorithm
 
unload() - Method in class ome.model.enums.ContrastMethod
 
unload() - Method in class ome.model.enums.Correction
 
unload() - Method in class ome.model.enums.DetectorType
 
unload() - Method in class ome.model.enums.DimensionOrder
 
unload() - Method in class ome.model.enums.EventType
 
unload() - Method in class ome.model.enums.ExperimentType
 
unload() - Method in class ome.model.enums.Family
 
unload() - Method in class ome.model.enums.FilamentType
 
unload() - Method in class ome.model.enums.FilterType
 
unload() - Method in class ome.model.enums.Format
 
unload() - Method in class ome.model.enums.Illumination
 
unload() - Method in class ome.model.enums.Immersion
 
unload() - Method in class ome.model.enums.LaserMedium
 
unload() - Method in class ome.model.enums.LaserType
 
unload() - Method in class ome.model.enums.Medium
 
unload() - Method in class ome.model.enums.MicrobeamManipulationType
 
unload() - Method in class ome.model.enums.MicroscopeType
 
unload() - Method in class ome.model.enums.PhotometricInterpretation
 
unload() - Method in class ome.model.enums.PixelsType
 
unload() - Method in class ome.model.enums.ProjectionAxis
 
unload() - Method in class ome.model.enums.ProjectionType
 
unload() - Method in class ome.model.enums.Pulse
 
unload() - Method in class ome.model.enums.RenderingModel
 
unload() - Method in class ome.model.experiment.Experiment
 
unload() - Method in class ome.model.experiment.MicrobeamManipulation
 
unload() - Method in class ome.model.fs.Fileset
 
unload() - Method in class ome.model.fs.FilesetEntry
 
unload() - Method in class ome.model.fs.FilesetJobLink
 
unload() - Method in class ome.model.internal.Link
 
unload() - Method in interface ome.model.IObject
set the loaded field to false, and set all non-ID fields to null.
unload() - Method in class ome.model.jobs.ImportJob
Deprecated.
 
unload() - Method in class ome.model.jobs.IndexingJob
 
unload() - Method in class ome.model.jobs.IntegrityCheckJob
 
unload() - Method in class ome.model.jobs.Job
 
unload() - Method in class ome.model.jobs.JobOriginalFileLink
 
unload() - Method in class ome.model.jobs.JobStatus
 
unload() - Method in class ome.model.jobs.MetadataImportJob
 
unload() - Method in class ome.model.jobs.ParseJob
 
unload() - Method in class ome.model.jobs.PixelDataJob
 
unload() - Method in class ome.model.jobs.ScriptJob
 
unload() - Method in class ome.model.jobs.ThumbnailGenerationJob
 
unload() - Method in class ome.model.jobs.UploadJob
 
unload() - Method in class ome.model.meta.DBPatch
 
unload() - Method in class ome.model.meta.Event
 
unload() - Method in class ome.model.meta.EventLog
 
unload() - Method in class ome.model.meta.Experimenter
 
unload() - Method in class ome.model.meta.ExperimenterGroup
 
unload() - Method in class ome.model.meta.ExternalInfo
 
unload() - Method in class ome.model.meta.GroupExperimenterMap
 
unload() - Method in class ome.model.meta.Namespace
 
unload() - Method in class ome.model.meta.Node
 
unload() - Method in class ome.model.meta.Session
 
unload() - Method in class ome.model.meta.Share
 
unload() - Method in class ome.model.meta.ShareMember
 
unload() - Method in class ome.model.roi.AffineTransform
 
unload() - Method in class ome.model.roi.Ellipse
 
unload() - Method in class ome.model.roi.Label
 
unload() - Method in class ome.model.roi.Line
 
unload() - Method in class ome.model.roi.Mask
 
unload() - Method in class ome.model.roi.Path
Deprecated.
 
unload() - Method in class ome.model.roi.Point
 
unload() - Method in class ome.model.roi.Polygon
 
unload() - Method in class ome.model.roi.Polyline
 
unload() - Method in class ome.model.roi.Rectangle
 
unload() - Method in class ome.model.roi.Roi
 
unload() - Method in class ome.model.roi.Shape
 
unload() - Method in class ome.model.screen.Plate
 
unload() - Method in class ome.model.screen.PlateAcquisition
 
unload() - Method in class ome.model.screen.Reagent
 
unload() - Method in class ome.model.screen.Screen
 
unload() - Method in class ome.model.screen.ScreenPlateLink
 
unload() - Method in class ome.model.screen.Well
 
unload() - Method in class ome.model.screen.WellReagentLink
 
unload() - Method in class ome.model.screen.WellSample
 
unload() - Method in class ome.model.stats.StatsInfo
 
unload() - Method in class ome.util.PermDetails
 
unlock() - Static method in class ome.util.DetailsFieldBridge
 
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Detector
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Dichroic
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Filter
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Instrument
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.LightPath
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.LightSource
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.acquisition.Objective
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.annotations.Annotation
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.containers.Dataset
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.containers.Folder
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.containers.Project
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.core.Channel
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.core.Image
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.core.OriginalFile
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.core.PlaneInfo
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.fs.Fileset
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in interface ome.model.IAnnotated
 
unmodifiableAnnotationLinks() - Method in class ome.model.meta.Experimenter
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.meta.ExperimenterGroup
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.meta.Namespace
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.meta.Node
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.meta.Session
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.roi.Roi
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.roi.Shape
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.screen.Plate
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.screen.PlateAcquisition
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.screen.Reagent
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.screen.Screen
Returns an unmodifiable collection-view
unmodifiableAnnotationLinks() - Method in class ome.model.screen.Well
Returns an unmodifiable collection-view
unmodifiableChannels() - Method in class ome.model.core.LogicalChannel
Returns an unmodifiable collection-view
unmodifiableChannels() - Method in class ome.model.core.Pixels
Returns an unmodifiable collection-view
unmodifiableChildFolders() - Method in class ome.model.containers.Folder
Returns an unmodifiable collection-view
unmodifiableDatasetLinks() - Method in class ome.model.containers.Project
Returns an unmodifiable collection-view
unmodifiableDatasetLinks() - Method in class ome.model.core.Image
Returns an unmodifiable collection-view
unmodifiableDetector() - Method in class ome.model.acquisition.Instrument
Returns an unmodifiable collection-view
unmodifiableDichroic() - Method in class ome.model.acquisition.Instrument
Returns an unmodifiable collection-view
unmodifiableEmissionFilterLink() - Method in class ome.model.acquisition.Filter
Returns an unmodifiable collection-view
unmodifiableEmissionFilterLink() - Method in class ome.model.acquisition.FilterSet
Returns an unmodifiable collection-view
unmodifiableEmissionFilterLink() - Method in class ome.model.acquisition.LightPath
Returns an unmodifiable collection-view
unmodifiableEvents() - Method in class ome.model.meta.Session
Returns an unmodifiable collection-view
unmodifiableExcitationFilterLink() - Method in class ome.model.acquisition.Filter
Returns an unmodifiable collection-view
unmodifiableExcitationFilterLink() - Method in class ome.model.acquisition.FilterSet
Returns an unmodifiable collection-view
unmodifiableExcitationFilterLink() - Method in class ome.model.acquisition.LightPath
Returns an unmodifiable collection-view
unmodifiableFilesetEntries() - Method in class ome.model.core.OriginalFile
Returns an unmodifiable collection-view
unmodifiableFilter() - Method in class ome.model.acquisition.Instrument
Returns an unmodifiable collection-view
unmodifiableFilterSet() - Method in class ome.model.acquisition.Instrument
Returns an unmodifiable collection-view
unmodifiableFolderLinks() - Method in class ome.model.core.Image
Returns an unmodifiable collection-view
unmodifiableFolderLinks() - Method in class ome.model.roi.Roi
Returns an unmodifiable collection-view
unmodifiableGroupExperimenterMap() - Method in class ome.model.meta.Experimenter
Returns an unmodifiable collection-view
unmodifiableGroupExperimenterMap() - Method in class ome.model.meta.ExperimenterGroup
Returns an unmodifiable collection-view
unmodifiableImageLinks() - Method in class ome.model.containers.Dataset
Returns an unmodifiable collection-view
unmodifiableImageLinks() - Method in class ome.model.containers.Folder
Returns an unmodifiable collection-view
unmodifiableImages() - Method in class ome.model.fs.Fileset
Returns an unmodifiable collection-view
unmodifiableJobLinks() - Method in class ome.model.fs.Fileset
Returns an unmodifiable collection-view
unmodifiableLightSource() - Method in class ome.model.acquisition.Instrument
Returns an unmodifiable collection-view
unmodifiableLightSourceSettings() - Method in class ome.model.experiment.MicrobeamManipulation
Returns an unmodifiable collection-view
unmodifiableLogs() - Method in class ome.model.meta.Event
Returns an unmodifiable collection-view
unmodifiableMicrobeamManipulation() - Method in class ome.model.experiment.Experiment
Returns an unmodifiable collection-view
unmodifiableObjective() - Method in class ome.model.acquisition.Instrument
Returns an unmodifiable collection-view
unmodifiableOriginalFileLinks() - Method in class ome.model.jobs.Job
Returns an unmodifiable collection-view
unmodifiableOtf() - Method in class ome.model.acquisition.Instrument
Returns an unmodifiable collection-view
unmodifiablePixels() - Method in class ome.model.core.Image
Returns an unmodifiable collection-view
unmodifiablePixelsFileMaps() - Method in class ome.model.core.OriginalFile
Returns an unmodifiable collection-view
unmodifiablePixelsFileMaps() - Method in class ome.model.core.Pixels
Returns an unmodifiable collection-view
unmodifiablePlaneInfo() - Method in class ome.model.core.Pixels
Returns an unmodifiable collection-view
unmodifiablePlateAcquisitions() - Method in class ome.model.screen.Plate
Returns an unmodifiable collection-view
unmodifiablePlateLinks() - Method in class ome.model.screen.Screen
Returns an unmodifiable collection-view
unmodifiableProjections() - Method in class ome.model.display.RenderingDef
Returns an unmodifiable collection-view
unmodifiableProjectLinks() - Method in class ome.model.containers.Dataset
Returns an unmodifiable collection-view
unmodifiableReagentLinks() - Method in class ome.model.screen.Well
Returns an unmodifiable collection-view
unmodifiableReagents() - Method in class ome.model.screen.Screen
Returns an unmodifiable collection-view
unmodifiableRoiLinks() - Method in class ome.model.containers.Folder
Returns an unmodifiable collection-view
unmodifiableRois() - Method in class ome.model.core.Image
Returns an unmodifiable collection-view
unmodifiableScreenLinks() - Method in class ome.model.screen.Plate
Returns an unmodifiable collection-view
unmodifiableSessions() - Method in class ome.model.meta.Node
Returns an unmodifiable collection-view
unmodifiableSettings() - Method in class ome.model.core.Pixels
Returns an unmodifiable collection-view
unmodifiableShapes() - Method in class ome.model.roi.Roi
Returns an unmodifiable collection-view
unmodifiableSpatialDomainEnhancement() - Method in class ome.model.display.ChannelBinding
Returns an unmodifiable collection-view
unmodifiableThumbnails() - Method in class ome.model.core.Pixels
Returns an unmodifiable collection-view
unmodifiableUsedFiles() - Method in class ome.model.fs.Fileset
Returns an unmodifiable collection-view
unmodifiableWaveRendering() - Method in class ome.model.display.RenderingDef
Returns an unmodifiable collection-view
unmodifiableWellLinks() - Method in class ome.model.screen.Reagent
Returns an unmodifiable collection-view
unmodifiableWells() - Method in class ome.model.screen.Plate
Returns an unmodifiable collection-view
unmodifiableWellSample() - Method in class ome.model.screen.PlateAcquisition
Returns an unmodifiable collection-view
unmodifiableWellSamples() - Method in class ome.model.core.Image
Returns an unmodifiable collection-view
unmodifiableWellSamples() - Method in class ome.model.screen.Well
Returns an unmodifiable collection-view
unSet(Permissions.Flag) - Method in class ome.model.internal.Permissions
turn a given Permissions.Flag off.
up - Variable in class ome.model.meta.Node
 
UP - Static variable in class ome.model.meta.Node
 
updateConfiguration(String, String) - Method in class ome.util.actions.PostgresSqlAction
 
updateConfiguration(String, String) - Method in interface ome.util.SqlAction
 
UPDATEEVENT - Static variable in class ome.model.internal.Details
 
updateOrInsertConfigValue(String, String) - Method in class ome.util.SqlAction.Impl
 
updateOrInsertConfigValue(String, String) - Method in interface ome.util.SqlAction
 
updateRows(PersistentCollection, Serializable, SessionImplementor) - Method in class ome.util.CountCollectionPersister
 
UploadJob - Class in ome.model.jobs
 
UploadJob() - Constructor for class ome.model.jobs.UploadJob
 
UploadJob(Long) - Constructor for class ome.model.jobs.UploadJob
 
UploadJob(Long, boolean) - Constructor for class ome.model.jobs.UploadJob
Main constructor.
upperLimit - Variable in class ome.model.display.PlaneSlicingContext
 
UPPERLIMIT - Static variable in class ome.model.display.PlaneSlicingContext
 
usedFiles - Variable in class ome.model.fs.Fileset
 
USEDFILES - Static variable in class ome.model.fs.Fileset
 
USER_IMMUTABLE - Static variable in class ome.model.internal.Permissions
R______ : user and only the user can only read
USER_PRIVATE - Static variable in class ome.model.internal.Permissions
RW____ : user and only user can read and write
USER_WRITEABLE - Static variable in class ome.model.internal.Permissions
RWR_R_ : all can read, user can write
userAgent - Variable in class ome.model.meta.Session
 
USERAGENT - Static variable in class ome.model.meta.Session
 
userIP - Variable in class ome.model.meta.Session
 
USERIP - Static variable in class ome.model.meta.Session
 
username - Variable in class ome.model.jobs.Job
 
USERNAME - Static variable in class ome.model.jobs.Job
 
Utils - Class in ome.util
various tools needed throughout Omero.
Utils() - Constructor for class ome.util.Utils
 
uuid - Variable in class ome.model.meta.ExternalInfo
 
UUID - Static variable in class ome.model.meta.ExternalInfo
 
uuid - Variable in class ome.model.meta.Node
 
UUID - Static variable in class ome.model.meta.Node
 
uuid - Variable in class ome.model.meta.Session
 
UUID - Static variable in class ome.model.meta.Session
 

V

VALID() - Static method in class ome.util.Validation
 
valid(Pixels) - Static method in class ome.util.Validator
 
validate() - Method in class ome.model.acquisition.Arc
 
validate() - Method in class ome.model.acquisition.Detector
 
validate() - Method in class ome.model.acquisition.DetectorSettings
 
validate() - Method in class ome.model.acquisition.Dichroic
 
validate() - Method in class ome.model.acquisition.Filament
 
validate() - Method in class ome.model.acquisition.Filter
 
validate() - Method in class ome.model.acquisition.FilterSet
 
validate() - Method in class ome.model.acquisition.FilterSetEmissionFilterLink
 
validate() - Method in class ome.model.acquisition.FilterSetExcitationFilterLink
 
validate() - Method in class ome.model.acquisition.GenericExcitationSource
 
validate() - Method in class ome.model.acquisition.ImagingEnvironment
 
validate() - Method in class ome.model.acquisition.Instrument
 
validate() - Method in class ome.model.acquisition.Laser
 
validate() - Method in class ome.model.acquisition.LightEmittingDiode
 
validate() - Method in class ome.model.acquisition.LightPath
 
validate() - Method in class ome.model.acquisition.LightPathEmissionFilterLink
 
validate() - Method in class ome.model.acquisition.LightPathExcitationFilterLink
 
validate() - Method in class ome.model.acquisition.LightSettings
 
validate() - Method in class ome.model.acquisition.LightSource
 
validate() - Method in class ome.model.acquisition.Microscope
 
validate() - Method in class ome.model.acquisition.Objective
 
validate() - Method in class ome.model.acquisition.ObjectiveSettings
 
validate() - Method in class ome.model.acquisition.OTF
 
validate() - Method in class ome.model.acquisition.StageLabel
 
validate() - Method in class ome.model.acquisition.TransmittanceRange
 
validate() - Method in class ome.model.annotations.Annotation
 
validate() - Method in class ome.model.annotations.AnnotationAnnotationLink
 
validate() - Method in class ome.model.annotations.BasicAnnotation
 
validate() - Method in class ome.model.annotations.BooleanAnnotation
 
validate() - Method in class ome.model.annotations.ChannelAnnotationLink
 
validate() - Method in class ome.model.annotations.CommentAnnotation
 
validate() - Method in class ome.model.annotations.DatasetAnnotationLink
 
validate() - Method in class ome.model.annotations.DetectorAnnotationLink
 
validate() - Method in class ome.model.annotations.DichroicAnnotationLink
 
validate() - Method in class ome.model.annotations.DoubleAnnotation
 
validate() - Method in class ome.model.annotations.ExperimenterAnnotationLink
 
validate() - Method in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
validate() - Method in class ome.model.annotations.FileAnnotation
 
validate() - Method in class ome.model.annotations.FilesetAnnotationLink
 
validate() - Method in class ome.model.annotations.FilterAnnotationLink
 
validate() - Method in class ome.model.annotations.FolderAnnotationLink
 
validate() - Method in class ome.model.annotations.ImageAnnotationLink
 
validate() - Method in class ome.model.annotations.InstrumentAnnotationLink
 
validate() - Method in class ome.model.annotations.LightPathAnnotationLink
 
validate() - Method in class ome.model.annotations.LightSourceAnnotationLink
 
validate() - Method in class ome.model.annotations.ListAnnotation
 
validate() - Method in class ome.model.annotations.LongAnnotation
 
validate() - Method in class ome.model.annotations.MapAnnotation
 
validate() - Method in class ome.model.annotations.NamespaceAnnotationLink
 
validate() - Method in class ome.model.annotations.NodeAnnotationLink
 
validate() - Method in class ome.model.annotations.NumericAnnotation
 
validate() - Method in class ome.model.annotations.ObjectiveAnnotationLink
 
validate() - Method in class ome.model.annotations.OriginalFileAnnotationLink
 
validate() - Method in class ome.model.annotations.PlaneInfoAnnotationLink
 
validate() - Method in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
validate() - Method in class ome.model.annotations.PlateAnnotationLink
 
validate() - Method in class ome.model.annotations.ProjectAnnotationLink
 
validate() - Method in class ome.model.annotations.ReagentAnnotationLink
 
validate() - Method in class ome.model.annotations.RoiAnnotationLink
 
validate() - Method in class ome.model.annotations.ScreenAnnotationLink
 
validate() - Method in class ome.model.annotations.SessionAnnotationLink
 
validate() - Method in class ome.model.annotations.ShapeAnnotationLink
 
validate() - Method in class ome.model.annotations.TagAnnotation
 
validate() - Method in class ome.model.annotations.TermAnnotation
 
validate() - Method in class ome.model.annotations.TextAnnotation
 
validate() - Method in class ome.model.annotations.TimestampAnnotation
 
validate() - Method in class ome.model.annotations.TypeAnnotation
 
validate() - Method in class ome.model.annotations.WellAnnotationLink
 
validate() - Method in class ome.model.annotations.XmlAnnotation
 
validate() - Method in class ome.model.containers.Dataset
 
validate() - Method in class ome.model.containers.DatasetImageLink
 
validate() - Method in class ome.model.containers.Folder
 
validate() - Method in class ome.model.containers.FolderImageLink
 
validate() - Method in class ome.model.containers.FolderRoiLink
 
validate() - Method in class ome.model.containers.Project
 
validate() - Method in class ome.model.containers.ProjectDatasetLink
 
validate() - Method in class ome.model.core.Channel
 
validate() - Method in class ome.model.core.Image
 
validate() - Method in class ome.model.core.LogicalChannel
 
validate() - Method in class ome.model.core.OriginalFile
 
validate() - Method in class ome.model.core.Pixels
 
validate() - Method in class ome.model.core.PixelsOriginalFileMap
 
validate() - Method in class ome.model.core.PlaneInfo
 
validate() - Method in class ome.model.display.ChannelBinding
 
validate() - Method in class ome.model.display.CodomainMapContext
 
validate() - Method in class ome.model.display.ContrastStretchingContext
 
validate() - Method in class ome.model.display.PlaneSlicingContext
 
validate() - Method in class ome.model.display.ProjectionDef
 
validate() - Method in class ome.model.display.QuantumDef
 
validate() - Method in class ome.model.display.RenderingDef
 
validate() - Method in class ome.model.display.ReverseIntensityContext
 
validate() - Method in class ome.model.display.Thumbnail
 
validate() - Method in class ome.model.enums.AcquisitionMode
 
validate() - Method in class ome.model.enums.AdminPrivilege
 
validate() - Method in class ome.model.enums.ArcType
 
validate() - Method in class ome.model.enums.Binning
 
validate() - Method in class ome.model.enums.ChecksumAlgorithm
 
validate() - Method in class ome.model.enums.ContrastMethod
 
validate() - Method in class ome.model.enums.Correction
 
validate() - Method in class ome.model.enums.DetectorType
 
validate() - Method in class ome.model.enums.DimensionOrder
 
validate() - Method in class ome.model.enums.EventType
 
validate() - Method in class ome.model.enums.ExperimentType
 
validate() - Method in class ome.model.enums.Family
 
validate() - Method in class ome.model.enums.FilamentType
 
validate() - Method in class ome.model.enums.FilterType
 
validate() - Method in class ome.model.enums.Format
 
validate() - Method in class ome.model.enums.Illumination
 
validate() - Method in class ome.model.enums.Immersion
 
validate() - Method in class ome.model.enums.LaserMedium
 
validate() - Method in class ome.model.enums.LaserType
 
validate() - Method in class ome.model.enums.Medium
 
validate() - Method in class ome.model.enums.MicrobeamManipulationType
 
validate() - Method in class ome.model.enums.MicroscopeType
 
validate() - Method in class ome.model.enums.PhotometricInterpretation
 
validate() - Method in class ome.model.enums.PixelsType
 
validate() - Method in class ome.model.enums.ProjectionAxis
 
validate() - Method in class ome.model.enums.ProjectionType
 
validate() - Method in class ome.model.enums.Pulse
 
validate() - Method in class ome.model.enums.RenderingModel
 
validate() - Method in class ome.model.experiment.Experiment
 
validate() - Method in class ome.model.experiment.MicrobeamManipulation
 
validate() - Method in class ome.model.fs.Fileset
 
validate() - Method in class ome.model.fs.FilesetEntry
 
validate() - Method in class ome.model.fs.FilesetJobLink
 
validate() - Method in class ome.model.internal.Link
 
validate() - Method in interface ome.model.IObject
calls the class-specific validator for this instance and returns the Validation object.
validate() - Method in class ome.model.jobs.ImportJob
Deprecated.
 
validate() - Method in class ome.model.jobs.IndexingJob
 
validate() - Method in class ome.model.jobs.IntegrityCheckJob
 
validate() - Method in class ome.model.jobs.Job
 
validate() - Method in class ome.model.jobs.JobOriginalFileLink
 
validate() - Method in class ome.model.jobs.JobStatus
 
validate() - Method in class ome.model.jobs.MetadataImportJob
 
validate() - Method in class ome.model.jobs.ParseJob
 
validate() - Method in class ome.model.jobs.PixelDataJob
 
validate() - Method in class ome.model.jobs.ScriptJob
 
validate() - Method in class ome.model.jobs.ThumbnailGenerationJob
 
validate() - Method in class ome.model.jobs.UploadJob
 
validate() - Method in class ome.model.meta.DBPatch
 
validate() - Method in class ome.model.meta.Event
 
validate() - Method in class ome.model.meta.EventLog
 
validate() - Method in class ome.model.meta.Experimenter
 
validate() - Method in class ome.model.meta.ExperimenterGroup
 
validate() - Method in class ome.model.meta.ExternalInfo
 
validate() - Method in class ome.model.meta.GroupExperimenterMap
 
validate() - Method in class ome.model.meta.Namespace
 
validate() - Method in class ome.model.meta.Node
 
validate() - Method in class ome.model.meta.Session
 
validate() - Method in class ome.model.meta.Share
 
validate() - Method in class ome.model.meta.ShareMember
 
validate() - Method in class ome.model.roi.AffineTransform
 
validate() - Method in class ome.model.roi.Ellipse
 
validate() - Method in class ome.model.roi.Label
 
validate() - Method in class ome.model.roi.Line
 
validate() - Method in class ome.model.roi.Mask
 
validate() - Method in class ome.model.roi.Path
Deprecated.
 
validate() - Method in class ome.model.roi.Point
 
validate() - Method in class ome.model.roi.Polygon
 
validate() - Method in class ome.model.roi.Polyline
 
validate() - Method in class ome.model.roi.Rectangle
 
validate() - Method in class ome.model.roi.Roi
 
validate() - Method in class ome.model.roi.Shape
 
validate() - Method in class ome.model.screen.Plate
 
validate() - Method in class ome.model.screen.PlateAcquisition
 
validate() - Method in class ome.model.screen.Reagent
 
validate() - Method in class ome.model.screen.Screen
 
validate() - Method in class ome.model.screen.ScreenPlateLink
 
validate() - Method in class ome.model.screen.Well
 
validate() - Method in class ome.model.screen.WellReagentLink
 
validate() - Method in class ome.model.screen.WellSample
 
validate() - Method in class ome.model.stats.StatsInfo
 
validate() - Method in class ome.util.PermDetails
 
validate(IObject) - Static method in class ome.util.Validator
 
validate(Channel) - Static method in class ome.util.Validator
 
validate(ImagingEnvironment) - Static method in class ome.util.Validator
 
Validation - Class in ome.util
collector for Model-validation status.
Validation() - Constructor for class ome.util.Validation
 
ValidationException - Exception in ome.conditions
More specific ApiUsageException, in that the specification of your data as outlined in the OME specification is incorrect.
ValidationException(String) - Constructor for exception ome.conditions.ValidationException
 
Validator - Class in ome.util
tests of model objects for validity.
Validator() - Constructor for class ome.util.Validator
 
value - Variable in class ome.model.enums.AcquisitionMode
 
VALUE - Static variable in class ome.model.enums.AcquisitionMode
 
value - Variable in class ome.model.enums.AdminPrivilege
 
VALUE - Static variable in class ome.model.enums.AdminPrivilege
 
value - Variable in class ome.model.enums.ArcType
 
VALUE - Static variable in class ome.model.enums.ArcType
 
value - Variable in class ome.model.enums.Binning
 
VALUE - Static variable in class ome.model.enums.Binning
 
value - Variable in class ome.model.enums.ChecksumAlgorithm
 
VALUE - Static variable in class ome.model.enums.ChecksumAlgorithm
 
value - Variable in class ome.model.enums.ContrastMethod
 
VALUE - Static variable in class ome.model.enums.ContrastMethod
 
value - Variable in class ome.model.enums.Correction
 
VALUE - Static variable in class ome.model.enums.Correction
 
value - Variable in class ome.model.enums.DetectorType
 
VALUE - Static variable in class ome.model.enums.DetectorType
 
value - Variable in class ome.model.enums.DimensionOrder
 
VALUE - Static variable in class ome.model.enums.DimensionOrder
 
value - Variable in class ome.model.enums.EventType
 
VALUE - Static variable in class ome.model.enums.EventType
 
value - Variable in class ome.model.enums.ExperimentType
 
VALUE - Static variable in class ome.model.enums.ExperimentType
 
value - Variable in class ome.model.enums.Family
 
VALUE - Static variable in class ome.model.enums.Family
 
value - Variable in class ome.model.enums.FilamentType
 
VALUE - Static variable in class ome.model.enums.FilamentType
 
value - Variable in class ome.model.enums.FilterType
 
VALUE - Static variable in class ome.model.enums.FilterType
 
value - Variable in class ome.model.enums.Format
 
VALUE - Static variable in class ome.model.enums.Format
 
value - Variable in class ome.model.enums.Illumination
 
VALUE - Static variable in class ome.model.enums.Illumination
 
value - Variable in class ome.model.enums.Immersion
 
VALUE - Static variable in class ome.model.enums.Immersion
 
value - Variable in class ome.model.enums.LaserMedium
 
VALUE - Static variable in class ome.model.enums.LaserMedium
 
value - Variable in class ome.model.enums.LaserType
 
VALUE - Static variable in class ome.model.enums.LaserType
 
value - Variable in class ome.model.enums.Medium
 
VALUE - Static variable in class ome.model.enums.Medium
 
value - Variable in class ome.model.enums.MicrobeamManipulationType
 
VALUE - Static variable in class ome.model.enums.MicrobeamManipulationType
 
value - Variable in class ome.model.enums.MicroscopeType
 
VALUE - Static variable in class ome.model.enums.MicroscopeType
 
value - Variable in class ome.model.enums.PhotometricInterpretation
 
VALUE - Static variable in class ome.model.enums.PhotometricInterpretation
 
value - Variable in class ome.model.enums.PixelsType
 
VALUE - Static variable in class ome.model.enums.PixelsType
 
value - Variable in class ome.model.enums.ProjectionAxis
 
VALUE - Static variable in class ome.model.enums.ProjectionAxis
 
value - Variable in class ome.model.enums.ProjectionType
 
VALUE - Static variable in class ome.model.enums.ProjectionType
 
value - Variable in class ome.model.enums.Pulse
 
VALUE - Static variable in class ome.model.enums.Pulse
 
value - Variable in class ome.model.enums.RenderingModel
 
VALUE - Static variable in class ome.model.enums.RenderingModel
 
value - Variable in class ome.model.jobs.JobStatus
 
VALUE - Static variable in class ome.model.jobs.JobStatus
 
VALUE - Static variable in class ome.model.units.ElectricPotential
 
VALUE - Static variable in class ome.model.units.Frequency
 
VALUE - Static variable in class ome.model.units.Length
 
VALUE - Static variable in class ome.model.units.Power
 
VALUE - Static variable in class ome.model.units.Pressure
 
VALUE - Static variable in class ome.model.units.Temperature
 
VALUE - Static variable in class ome.model.units.Time
 
value - Variable in class ome.parameters.QueryParameter
 
VALUE_1X1 - Static variable in class ome.model.enums.Binning
 
VALUE_2X2 - Static variable in class ome.model.enums.Binning
 
VALUE_4X4 - Static variable in class ome.model.enums.Binning
 
VALUE_8X8 - Static variable in class ome.model.enums.Binning
 
VALUE_ACHRO - Static variable in class ome.model.enums.Correction
 
VALUE_ACHROMAT - Static variable in class ome.model.enums.Correction
 
VALUE_ADLER_32 - Static variable in class ome.model.enums.ChecksumAlgorithm
 
VALUE_AG - Static variable in class ome.model.enums.LaserMedium
 
VALUE_AIR - Static variable in class ome.model.enums.Immersion
 
VALUE_AIR - Static variable in class ome.model.enums.Medium
 
VALUE_ALEXANDRITE - Static variable in class ome.model.enums.LaserMedium
 
VALUE_ANALOG_VIDEO - Static variable in class ome.model.enums.DetectorType
 
VALUE_APD - Static variable in class ome.model.enums.DetectorType
 
VALUE_APO - Static variable in class ome.model.enums.Correction
 
VALUE_AR - Static variable in class ome.model.enums.LaserMedium
 
VALUE_AR_CL - Static variable in class ome.model.enums.LaserMedium
 
VALUE_AR_FL - Static variable in class ome.model.enums.LaserMedium
 
VALUE_ARGB - Static variable in class ome.model.enums.PhotometricInterpretation
 
VALUE_BAND_PASS - Static variable in class ome.model.enums.FilterType
 
VALUE_BIT - Static variable in class ome.model.enums.PixelsType
 
VALUE_BRIGHT_FIELD - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_BRIGHTFIELD - Static variable in class ome.model.enums.ContrastMethod
 
VALUE_CANCELLED - Static variable in class ome.model.jobs.JobStatus
 
VALUE_CCD - Static variable in class ome.model.enums.DetectorType
 
VALUE_CHGRP - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_CHOWN - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_CMOS - Static variable in class ome.model.enums.DetectorType
 
VALUE_CMYK - Static variable in class ome.model.enums.PhotometricInterpretation
 
VALUE_CO - Static variable in class ome.model.enums.LaserMedium
 
VALUE_CO2 - Static variable in class ome.model.enums.LaserMedium
 
VALUE_COLOCALIZATION - Static variable in class ome.model.enums.ExperimentType
 
VALUE_COLOR_MAP - Static variable in class ome.model.enums.PhotometricInterpretation
 
VALUE_COMPLEX - Static variable in class ome.model.enums.PixelsType
 
VALUE_CORRELATION_SPECTROSCOPY - Static variable in class ome.model.enums.DetectorType
 
VALUE_COUMARIN_C30 - Static variable in class ome.model.enums.LaserMedium
 
VALUE_CRC_32 - Static variable in class ome.model.enums.ChecksumAlgorithm
 
VALUE_CU - Static variable in class ome.model.enums.LaserMedium
 
VALUE_CW - Static variable in class ome.model.enums.Pulse
 
VALUE_DARKFIELD - Static variable in class ome.model.enums.ContrastMethod
 
VALUE_DELETE_FILE - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_DELETE_MANAGED_REPO - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_DELETE_OWNED - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_DELETE_SCRIPT_REPO - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_DIC - Static variable in class ome.model.enums.ContrastMethod
 
VALUE_DICHROIC - Static variable in class ome.model.enums.FilterType
 
VALUE_DISSECTION - Static variable in class ome.model.enums.MicroscopeType
 
VALUE_DOUBLE - Static variable in class ome.model.enums.PixelsType
 
VALUE_DOUBLE_COMPLEX - Static variable in class ome.model.enums.PixelsType
 
VALUE_DYE - Static variable in class ome.model.enums.LaserType
 
VALUE_EBCCD - Static variable in class ome.model.enums.DetectorType
 
VALUE_ELECTROPHYSIOLOGY - Static variable in class ome.model.enums.ExperimentType
 
VALUE_ELECTROPHYSIOLOGY - Static variable in class ome.model.enums.MicroscopeType
 
VALUE_EM_CCD - Static variable in class ome.model.enums.DetectorType
 
VALUE_EMINUS - Static variable in class ome.model.enums.LaserMedium
 
VALUE_EPIFLUORESCENCE - Static variable in class ome.model.enums.Illumination
 
VALUE_ER_GLASS - Static variable in class ome.model.enums.LaserMedium
 
VALUE_ER_YAG - Static variable in class ome.model.enums.LaserMedium
 
VALUE_ERROR - Static variable in class ome.model.jobs.JobStatus
 
VALUE_EXCIMER - Static variable in class ome.model.enums.LaserType
 
VALUE_EXPONENTIAL - Static variable in class ome.model.enums.Family
 
VALUE_FILE_SIZE_64 - Static variable in class ome.model.enums.ChecksumAlgorithm
 
VALUE_FINISHED - Static variable in class ome.model.jobs.JobStatus
 
VALUE_FISH - Static variable in class ome.model.enums.ExperimentType
 
VALUE_FL - Static variable in class ome.model.enums.Correction
 
VALUE_FLIP - Static variable in class ome.model.enums.MicrobeamManipulationType
 
VALUE_FLOAT - Static variable in class ome.model.enums.PixelsType
 
VALUE_FLUAR - Static variable in class ome.model.enums.Correction
 
VALUE_FLUOR - Static variable in class ome.model.enums.Correction
 
VALUE_FLUORESCENCE - Static variable in class ome.model.enums.ContrastMethod
 
VALUE_FLUORESCENCE_CORRELATION_SPECTROSCOPY - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_FLUORESCENCE_LIFETIME - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_FLUORESCENCE_LIFETIME - Static variable in class ome.model.enums.ExperimentType
 
VALUE_FLUOTAR - Static variable in class ome.model.enums.Correction
 
VALUE_FOUR_DPLUS - Static variable in class ome.model.enums.ExperimentType
 
VALUE_FP - Static variable in class ome.model.enums.ExperimentType
 
VALUE_FRAP - Static variable in class ome.model.enums.MicrobeamManipulationType
 
VALUE_FREE_ELECTRON - Static variable in class ome.model.enums.LaserType
 
VALUE_FRET - Static variable in class ome.model.enums.ExperimentType
 
VALUE_FSM - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_FTIR - Static variable in class ome.model.enums.DetectorType
 
VALUE_FULL_TEXT - Static variable in class ome.model.enums.EventType
 
VALUE_GA_AL_AS - Static variable in class ome.model.enums.LaserMedium
 
VALUE_GA_AS - Static variable in class ome.model.enums.LaserMedium
 
VALUE_GAS - Static variable in class ome.model.enums.LaserType
 
VALUE_GLYCEROL - Static variable in class ome.model.enums.Immersion
 
VALUE_GLYCEROL - Static variable in class ome.model.enums.Medium
 
VALUE_GREYSCALE - Static variable in class ome.model.enums.RenderingModel
 
VALUE_H2O - Static variable in class ome.model.enums.LaserMedium
 
VALUE_HALOGEN - Static variable in class ome.model.enums.FilamentType
 
VALUE_HE_CD - Static variable in class ome.model.enums.LaserMedium
 
VALUE_HE_NE - Static variable in class ome.model.enums.LaserMedium
 
VALUE_HFL - Static variable in class ome.model.enums.LaserMedium
 
VALUE_HG - Static variable in class ome.model.enums.ArcType
 
VALUE_HG_XE - Static variable in class ome.model.enums.ArcType
 
VALUE_HO_YAG - Static variable in class ome.model.enums.LaserMedium
 
VALUE_HO_YLF - Static variable in class ome.model.enums.LaserMedium
 
VALUE_HOFFMAN_MODULATION - Static variable in class ome.model.enums.ContrastMethod
 
VALUE_HSV - Static variable in class ome.model.enums.PhotometricInterpretation
 
VALUE_IMMUNOCYTOCHEMISTRY - Static variable in class ome.model.enums.ExperimentType
 
VALUE_IMMUNOFLUORESCENCE - Static variable in class ome.model.enums.ExperimentType
 
VALUE_IMPORT - Static variable in class ome.model.enums.EventType
 
VALUE_INCANDESCENT - Static variable in class ome.model.enums.FilamentType
 
VALUE_INT16 - Static variable in class ome.model.enums.PixelsType
 
VALUE_INT32 - Static variable in class ome.model.enums.PixelsType
 
VALUE_INT8 - Static variable in class ome.model.enums.PixelsType
 
VALUE_INTENSIFIED_CCD - Static variable in class ome.model.enums.DetectorType
 
VALUE_INTERNAL - Static variable in class ome.model.enums.EventType
 
VALUE_INVERSE_FRAP - Static variable in class ome.model.enums.MicrobeamManipulationType
 
VALUE_INVERTED - Static variable in class ome.model.enums.MicroscopeType
 
VALUE_ION_IMAGING - Static variable in class ome.model.enums.ExperimentType
 
VALUE_KR - Static variable in class ome.model.enums.LaserMedium
 
VALUE_KR_CL - Static variable in class ome.model.enums.LaserMedium
 
VALUE_KR_FL - Static variable in class ome.model.enums.LaserMedium
 
VALUE_LASER_SCANNING_CONFOCAL_MICROSCOPY - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_LCM - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_LIFETIME_IMAGING - Static variable in class ome.model.enums.DetectorType
 
VALUE_LINEAR - Static variable in class ome.model.enums.Family
 
VALUE_LOGARITHMIC - Static variable in class ome.model.enums.Family
 
VALUE_LONG_PASS - Static variable in class ome.model.enums.FilterType
 
VALUE_MAXIMUM - Static variable in class ome.model.enums.ProjectionType
 
VALUE_MD5_128 - Static variable in class ome.model.enums.ChecksumAlgorithm
 
VALUE_MEAN - Static variable in class ome.model.enums.ProjectionType
 
VALUE_METAL_VAPOR - Static variable in class ome.model.enums.LaserType
 
VALUE_MODE_LOCKED - Static variable in class ome.model.enums.Pulse
 
VALUE_MODIFY_GROUP - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_MODIFY_GROUP_MEMBERSHIP - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_MODIFY_USER - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_MODULO_T - Static variable in class ome.model.enums.ProjectionAxis
 
VALUE_MODULO_Z - Static variable in class ome.model.enums.ProjectionAxis
 
VALUE_MONOCHROME - Static variable in class ome.model.enums.PhotometricInterpretation
 
VALUE_MULTI - Static variable in class ome.model.enums.Immersion
 
VALUE_MULTI_PASS - Static variable in class ome.model.enums.FilterType
 
VALUE_MULTI_PHOTON_MICROSCOPY - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_MURMUR3_128 - Static variable in class ome.model.enums.ChecksumAlgorithm
 
VALUE_MURMUR3_32 - Static variable in class ome.model.enums.ChecksumAlgorithm
 
VALUE_N - Static variable in class ome.model.enums.LaserMedium
 
VALUE_ND_GLASS - Static variable in class ome.model.enums.LaserMedium
 
VALUE_ND_YAG - Static variable in class ome.model.enums.LaserMedium
 
VALUE_NEAR_FIELD_SCANNING_OPTICAL_MICROSCOPY - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_NEOFLUAR - Static variable in class ome.model.enums.Correction
 
VALUE_NEUTRAL_DENSITY - Static variable in class ome.model.enums.FilterType
 
VALUE_NON_LINEAR - Static variable in class ome.model.enums.Illumination
 
VALUE_OBLIQUE - Static variable in class ome.model.enums.Illumination
 
VALUE_OBLIQUE_ILLUMINATION - Static variable in class ome.model.enums.ContrastMethod
 
VALUE_OIL - Static variable in class ome.model.enums.Immersion
 
VALUE_OIL - Static variable in class ome.model.enums.Medium
 
VALUE_OPTICAL_TRAPPING - Static variable in class ome.model.enums.MicrobeamManipulationType
 
VALUE_OTHER - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_OTHER - Static variable in class ome.model.enums.ArcType
 
VALUE_OTHER - Static variable in class ome.model.enums.ContrastMethod
 
VALUE_OTHER - Static variable in class ome.model.enums.Correction
 
VALUE_OTHER - Static variable in class ome.model.enums.DetectorType
 
VALUE_OTHER - Static variable in class ome.model.enums.ExperimentType
 
VALUE_OTHER - Static variable in class ome.model.enums.FilamentType
 
VALUE_OTHER - Static variable in class ome.model.enums.FilterType
 
VALUE_OTHER - Static variable in class ome.model.enums.Illumination
 
VALUE_OTHER - Static variable in class ome.model.enums.Immersion
 
VALUE_OTHER - Static variable in class ome.model.enums.LaserMedium
 
VALUE_OTHER - Static variable in class ome.model.enums.LaserType
 
VALUE_OTHER - Static variable in class ome.model.enums.Medium
 
VALUE_OTHER - Static variable in class ome.model.enums.MicrobeamManipulationType
 
VALUE_OTHER - Static variable in class ome.model.enums.MicroscopeType
 
VALUE_OTHER - Static variable in class ome.model.enums.Pulse
 
VALUE_PALM - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_PGIDOCUMENTATION - Static variable in class ome.model.enums.ExperimentType
 
VALUE_PHASE - Static variable in class ome.model.enums.ContrastMethod
 
VALUE_PHOTOABLATION - Static variable in class ome.model.enums.MicrobeamManipulationType
 
VALUE_PHOTOACTIVATION - Static variable in class ome.model.enums.MicrobeamManipulationType
 
VALUE_PHOTOBLEACHING - Static variable in class ome.model.enums.ExperimentType
 
VALUE_PHOTODIODE - Static variable in class ome.model.enums.DetectorType
 
VALUE_PLAN_APO - Static variable in class ome.model.enums.Correction
 
VALUE_PLAN_FLUOR - Static variable in class ome.model.enums.Correction
 
VALUE_PMT - Static variable in class ome.model.enums.DetectorType
 
VALUE_POLARIZED_LIGHT - Static variable in class ome.model.enums.ContrastMethod
 
VALUE_POLYNOMIAL - Static variable in class ome.model.enums.Family
 
VALUE_PROCESSING - Static variable in class ome.model.enums.EventType
 
VALUE_QSWITCHED - Static variable in class ome.model.enums.Pulse
 
VALUE_QUEUED - Static variable in class ome.model.jobs.JobStatus
 
VALUE_READ_SESSION - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_REPETITIVE - Static variable in class ome.model.enums.Pulse
 
VALUE_REQUEUED - Static variable in class ome.model.jobs.JobStatus
 
VALUE_RESUBMITTED - Static variable in class ome.model.jobs.JobStatus
 
VALUE_RGB - Static variable in class ome.model.enums.PhotometricInterpretation
 
VALUE_RGB - Static variable in class ome.model.enums.RenderingModel
 
VALUE_RHODAMINE6G - Static variable in class ome.model.enums.LaserMedium
 
VALUE_RUBY - Static variable in class ome.model.enums.LaserMedium
 
VALUE_RUNNING - Static variable in class ome.model.jobs.JobStatus
 
VALUE_SCREEN - Static variable in class ome.model.enums.ExperimentType
 
VALUE_SECOND_HARMONIC_GENERATION_IMAGING - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_SEMICONDUCTOR - Static variable in class ome.model.enums.LaserType
 
VALUE_SESSIONS - Static variable in class ome.model.enums.EventType
 
VALUE_SHA1_160 - Static variable in class ome.model.enums.ChecksumAlgorithm
 
VALUE_SHOOLA - Static variable in class ome.model.enums.EventType
 
VALUE_SHORT_PASS - Static variable in class ome.model.enums.FilterType
 
VALUE_SINGLE - Static variable in class ome.model.enums.Pulse
 
VALUE_SINGLE_MOLECULE_IMAGING - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_SLIT_SCAN_CONFOCAL - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_SOLID_STATE - Static variable in class ome.model.enums.LaserType
 
VALUE_SPECTRAL_IMAGING - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_SPECTRAL_IMAGING - Static variable in class ome.model.enums.ExperimentType
 
VALUE_SPECTROSCOPY - Static variable in class ome.model.enums.DetectorType
 
VALUE_SPIM - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_SPINNING_DISK_CONFOCAL - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_STED - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_STORM - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_STRUCTURED_ILLUMINATION - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_SUBMITTED - Static variable in class ome.model.jobs.JobStatus
 
VALUE_SUDO - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_SUM - Static variable in class ome.model.enums.ProjectionType
 
VALUE_SUPER_FLUOR - Static variable in class ome.model.enums.Correction
 
VALUE_SWEPT_FIELD_CONFOCAL - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_T - Static variable in class ome.model.enums.ProjectionAxis
 
VALUE_TASK - Static variable in class ome.model.enums.EventType
 
VALUE_TEST - Static variable in class ome.model.enums.EventType
 
VALUE_TI_SAPPHIRE - Static variable in class ome.model.enums.LaserMedium
 
VALUE_TIME_LAPSE - Static variable in class ome.model.enums.ExperimentType
 
VALUE_TIRF - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_TOTAL_INTERNAL_REFLECTION - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_TRANSMITTED - Static variable in class ome.model.enums.Illumination
 
VALUE_TUNEABLE - Static variable in class ome.model.enums.FilterType
 
VALUE_UINT16 - Static variable in class ome.model.enums.PixelsType
 
VALUE_UINT32 - Static variable in class ome.model.enums.PixelsType
 
VALUE_UINT8 - Static variable in class ome.model.enums.PixelsType
 
VALUE_UNCAGING - Static variable in class ome.model.enums.MicrobeamManipulationType
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.ArcType
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.ContrastMethod
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.Correction
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.DetectorType
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.ExperimentType
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.FilamentType
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.FilterType
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.Illumination
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.Immersion
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.LaserMedium
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.LaserType
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.Medium
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.MicrobeamManipulationType
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.MicroscopeType
 
VALUE_UNKNOWN - Static variable in class ome.model.enums.Pulse
 
VALUE_UPRIGHT - Static variable in class ome.model.enums.MicroscopeType
 
VALUE_USER - Static variable in class ome.model.enums.EventType
 
VALUE_UV - Static variable in class ome.model.enums.Correction
 
VALUE_VIOLET_CORRECTED - Static variable in class ome.model.enums.Correction
 
VALUE_WAITING - Static variable in class ome.model.jobs.JobStatus
 
VALUE_WATER - Static variable in class ome.model.enums.Immersion
 
VALUE_WATER - Static variable in class ome.model.enums.Medium
 
VALUE_WATER_DIPPING - Static variable in class ome.model.enums.Immersion
 
VALUE_WIDE_FIELD - Static variable in class ome.model.enums.AcquisitionMode
 
VALUE_WRITE_FILE - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_WRITE_MANAGED_REPO - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_WRITE_OWNED - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_WRITE_SCRIPT_REPO - Static variable in class ome.model.enums.AdminPrivilege
 
VALUE_XE - Static variable in class ome.model.enums.ArcType
 
VALUE_XE - Static variable in class ome.model.enums.LaserMedium
 
VALUE_XE_BR - Static variable in class ome.model.enums.LaserMedium
 
VALUE_XE_CL - Static variable in class ome.model.enums.LaserMedium
 
VALUE_XE_FL - Static variable in class ome.model.enums.LaserMedium
 
VALUE_XYCTZ - Static variable in class ome.model.enums.DimensionOrder
 
VALUE_XYCZT - Static variable in class ome.model.enums.DimensionOrder
 
VALUE_XYTCZ - Static variable in class ome.model.enums.DimensionOrder
 
VALUE_XYTZC - Static variable in class ome.model.enums.DimensionOrder
 
VALUE_XYZCT - Static variable in class ome.model.enums.DimensionOrder
 
VALUE_XYZTC - Static variable in class ome.model.enums.DimensionOrder
 
VALUE_Z - Static variable in class ome.model.enums.ProjectionAxis
 
valueOf(String) - Static method in enum ome.model.enums.UnitsElectricPotential
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsFrequency
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsLength
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsPower
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsPressure
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsTemperature
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.enums.UnitsTime
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.internal.Permissions.Flag
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.internal.Permissions.Right
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.internal.Permissions.Role
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ome.model.units.UNITS
Returns the enum constant of this type with the specified name.
values() - Static method in enum ome.model.enums.UnitsElectricPotential
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsFrequency
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsLength
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsPower
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsPressure
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsTemperature
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.enums.UnitsTime
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.internal.Permissions.Flag
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.internal.Permissions.Right
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.internal.Permissions.Role
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ome.model.units.UNITS
Returns an array containing the constants of this enum type, in the order they are declared.
VERSION - Static variable in class ome.model.acquisition.Detector
 
version - Variable in class ome.model.acquisition.Detector
 
VERSION - Static variable in class ome.model.acquisition.DetectorSettings
 
version - Variable in class ome.model.acquisition.DetectorSettings
 
VERSION - Static variable in class ome.model.acquisition.Dichroic
 
version - Variable in class ome.model.acquisition.Dichroic
 
VERSION - Static variable in class ome.model.acquisition.Filter
 
version - Variable in class ome.model.acquisition.Filter
 
VERSION - Static variable in class ome.model.acquisition.FilterSet
 
version - Variable in class ome.model.acquisition.FilterSet
 
VERSION - Static variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
version - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
VERSION - Static variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
version - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
VERSION - Static variable in class ome.model.acquisition.ImagingEnvironment
 
version - Variable in class ome.model.acquisition.ImagingEnvironment
 
VERSION - Static variable in class ome.model.acquisition.Instrument
 
version - Variable in class ome.model.acquisition.Instrument
 
VERSION - Static variable in class ome.model.acquisition.LightPath
 
version - Variable in class ome.model.acquisition.LightPath
 
VERSION - Static variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
version - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
VERSION - Static variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
version - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
VERSION - Static variable in class ome.model.acquisition.LightSettings
 
version - Variable in class ome.model.acquisition.LightSettings
 
VERSION - Static variable in class ome.model.acquisition.LightSource
 
version - Variable in class ome.model.acquisition.LightSource
 
VERSION - Static variable in class ome.model.acquisition.Microscope
 
version - Variable in class ome.model.acquisition.Microscope
 
VERSION - Static variable in class ome.model.acquisition.Objective
 
version - Variable in class ome.model.acquisition.Objective
 
VERSION - Static variable in class ome.model.acquisition.ObjectiveSettings
 
version - Variable in class ome.model.acquisition.ObjectiveSettings
 
VERSION - Static variable in class ome.model.acquisition.OTF
 
version - Variable in class ome.model.acquisition.OTF
 
VERSION - Static variable in class ome.model.acquisition.StageLabel
 
version - Variable in class ome.model.acquisition.StageLabel
 
VERSION - Static variable in class ome.model.acquisition.TransmittanceRange
 
version - Variable in class ome.model.acquisition.TransmittanceRange
 
VERSION - Static variable in class ome.model.annotations.Annotation
 
version - Variable in class ome.model.annotations.Annotation
 
VERSION - Static variable in class ome.model.annotations.AnnotationAnnotationLink
 
version - Variable in class ome.model.annotations.AnnotationAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.ChannelAnnotationLink
 
version - Variable in class ome.model.annotations.ChannelAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.DatasetAnnotationLink
 
version - Variable in class ome.model.annotations.DatasetAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.DetectorAnnotationLink
 
version - Variable in class ome.model.annotations.DetectorAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.DichroicAnnotationLink
 
version - Variable in class ome.model.annotations.DichroicAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.ExperimenterAnnotationLink
 
version - Variable in class ome.model.annotations.ExperimenterAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
version - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.FilesetAnnotationLink
 
version - Variable in class ome.model.annotations.FilesetAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.FilterAnnotationLink
 
version - Variable in class ome.model.annotations.FilterAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.FolderAnnotationLink
 
version - Variable in class ome.model.annotations.FolderAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.ImageAnnotationLink
 
version - Variable in class ome.model.annotations.ImageAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.InstrumentAnnotationLink
 
version - Variable in class ome.model.annotations.InstrumentAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.LightPathAnnotationLink
 
version - Variable in class ome.model.annotations.LightPathAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.LightSourceAnnotationLink
 
version - Variable in class ome.model.annotations.LightSourceAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.NamespaceAnnotationLink
 
version - Variable in class ome.model.annotations.NamespaceAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.NodeAnnotationLink
 
version - Variable in class ome.model.annotations.NodeAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.ObjectiveAnnotationLink
 
version - Variable in class ome.model.annotations.ObjectiveAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.OriginalFileAnnotationLink
 
version - Variable in class ome.model.annotations.OriginalFileAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
version - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
version - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.PlateAnnotationLink
 
version - Variable in class ome.model.annotations.PlateAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.ProjectAnnotationLink
 
version - Variable in class ome.model.annotations.ProjectAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.ReagentAnnotationLink
 
version - Variable in class ome.model.annotations.ReagentAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.RoiAnnotationLink
 
version - Variable in class ome.model.annotations.RoiAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.ScreenAnnotationLink
 
version - Variable in class ome.model.annotations.ScreenAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.SessionAnnotationLink
 
version - Variable in class ome.model.annotations.SessionAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.ShapeAnnotationLink
 
version - Variable in class ome.model.annotations.ShapeAnnotationLink
 
VERSION - Static variable in class ome.model.annotations.WellAnnotationLink
 
version - Variable in class ome.model.annotations.WellAnnotationLink
 
VERSION - Static variable in class ome.model.containers.Dataset
 
version - Variable in class ome.model.containers.Dataset
 
VERSION - Static variable in class ome.model.containers.DatasetImageLink
 
version - Variable in class ome.model.containers.DatasetImageLink
 
VERSION - Static variable in class ome.model.containers.Folder
 
version - Variable in class ome.model.containers.Folder
 
VERSION - Static variable in class ome.model.containers.FolderImageLink
 
version - Variable in class ome.model.containers.FolderImageLink
 
VERSION - Static variable in class ome.model.containers.FolderRoiLink
 
version - Variable in class ome.model.containers.FolderRoiLink
 
VERSION - Static variable in class ome.model.containers.Project
 
version - Variable in class ome.model.containers.Project
 
VERSION - Static variable in class ome.model.containers.ProjectDatasetLink
 
version - Variable in class ome.model.containers.ProjectDatasetLink
 
VERSION - Static variable in class ome.model.core.Channel
 
version - Variable in class ome.model.core.Channel
 
VERSION - Static variable in class ome.model.core.Image
 
version - Variable in class ome.model.core.Image
 
VERSION - Static variable in class ome.model.core.LogicalChannel
 
version - Variable in class ome.model.core.LogicalChannel
 
VERSION - Static variable in class ome.model.core.OriginalFile
 
version - Variable in class ome.model.core.OriginalFile
 
VERSION - Static variable in class ome.model.core.Pixels
 
version - Variable in class ome.model.core.Pixels
 
VERSION - Static variable in class ome.model.core.PixelsOriginalFileMap
 
version - Variable in class ome.model.core.PixelsOriginalFileMap
 
VERSION - Static variable in class ome.model.core.PlaneInfo
 
version - Variable in class ome.model.core.PlaneInfo
 
VERSION - Static variable in class ome.model.display.ChannelBinding
 
version - Variable in class ome.model.display.ChannelBinding
 
VERSION - Static variable in class ome.model.display.CodomainMapContext
 
version - Variable in class ome.model.display.CodomainMapContext
 
VERSION - Static variable in class ome.model.display.ProjectionDef
 
version - Variable in class ome.model.display.ProjectionDef
 
VERSION - Static variable in class ome.model.display.QuantumDef
 
version - Variable in class ome.model.display.QuantumDef
 
VERSION - Static variable in class ome.model.display.RenderingDef
 
version - Variable in class ome.model.display.RenderingDef
 
VERSION - Static variable in class ome.model.display.Thumbnail
 
version - Variable in class ome.model.display.Thumbnail
 
VERSION - Static variable in class ome.model.experiment.Experiment
 
version - Variable in class ome.model.experiment.Experiment
 
VERSION - Static variable in class ome.model.experiment.MicrobeamManipulation
 
version - Variable in class ome.model.experiment.MicrobeamManipulation
 
VERSION - Static variable in class ome.model.fs.Fileset
 
version - Variable in class ome.model.fs.Fileset
 
VERSION - Static variable in class ome.model.fs.FilesetEntry
 
version - Variable in class ome.model.fs.FilesetEntry
 
VERSION - Static variable in class ome.model.fs.FilesetJobLink
 
version - Variable in class ome.model.fs.FilesetJobLink
 
VERSION - Static variable in class ome.model.internal.Link
 
version - Variable in class ome.model.internal.Link
 
VERSION - Static variable in class ome.model.jobs.Job
 
version - Variable in class ome.model.jobs.Job
 
VERSION - Static variable in class ome.model.jobs.JobOriginalFileLink
 
version - Variable in class ome.model.jobs.JobOriginalFileLink
 
VERSION - Static variable in class ome.model.meta.Experimenter
 
version - Variable in class ome.model.meta.Experimenter
 
VERSION - Static variable in class ome.model.meta.ExperimenterGroup
 
version - Variable in class ome.model.meta.ExperimenterGroup
 
VERSION - Static variable in class ome.model.meta.GroupExperimenterMap
 
version - Variable in class ome.model.meta.GroupExperimenterMap
 
VERSION - Static variable in class ome.model.meta.Namespace
 
version - Variable in class ome.model.meta.Namespace
 
VERSION - Static variable in class ome.model.meta.Node
 
version - Variable in class ome.model.meta.Node
 
VERSION - Static variable in class ome.model.meta.Session
 
version - Variable in class ome.model.meta.Session
 
VERSION - Static variable in class ome.model.meta.ShareMember
 
version - Variable in class ome.model.meta.ShareMember
 
VERSION - Static variable in class ome.model.roi.AffineTransform
 
version - Variable in class ome.model.roi.AffineTransform
 
VERSION - Static variable in class ome.model.roi.Roi
 
version - Variable in class ome.model.roi.Roi
 
VERSION - Static variable in class ome.model.roi.Shape
 
version - Variable in class ome.model.roi.Shape
 
VERSION - Static variable in class ome.model.screen.Plate
 
version - Variable in class ome.model.screen.Plate
 
VERSION - Static variable in class ome.model.screen.PlateAcquisition
 
version - Variable in class ome.model.screen.PlateAcquisition
 
VERSION - Static variable in class ome.model.screen.Reagent
 
version - Variable in class ome.model.screen.Reagent
 
VERSION - Static variable in class ome.model.screen.Screen
 
version - Variable in class ome.model.screen.Screen
 
VERSION - Static variable in class ome.model.screen.ScreenPlateLink
 
version - Variable in class ome.model.screen.ScreenPlateLink
 
VERSION - Static variable in class ome.model.screen.Well
 
version - Variable in class ome.model.screen.Well
 
VERSION - Static variable in class ome.model.screen.WellReagentLink
 
version - Variable in class ome.model.screen.WellReagentLink
 
VERSION - Static variable in class ome.model.screen.WellSample
 
version - Variable in class ome.model.screen.WellSample
 
VERSION - Static variable in class ome.model.stats.StatsInfo
 
version - Variable in class ome.model.stats.StatsInfo
 
versionInfo - Variable in class ome.model.jobs.MetadataImportJob
 
VERSIONINFO - Static variable in class ome.model.jobs.MetadataImportJob
 
versionInfo - Variable in class ome.model.jobs.UploadJob
 
VERSIONINFO - Static variable in class ome.model.jobs.UploadJob
 
voltage - Variable in class ome.model.acquisition.Detector
 
VOLTAGE - Static variable in class ome.model.acquisition.Detector
 
voltage - Variable in class ome.model.acquisition.DetectorSettings
 
VOLTAGE - Static variable in class ome.model.acquisition.DetectorSettings
 

W

waveIncrement - Variable in class ome.model.core.Pixels
 
WAVEINCREMENT - Static variable in class ome.model.core.Pixels
 
wavelength - Variable in class ome.model.acquisition.Laser
 
WAVELENGTH - Static variable in class ome.model.acquisition.Laser
 
wavelength - Variable in class ome.model.acquisition.LightSettings
 
WAVELENGTH - Static variable in class ome.model.acquisition.LightSettings
 
waveRendering - Variable in class ome.model.display.RenderingDef
 
WAVERENDERING - Static variable in class ome.model.display.RenderingDef
 
waveStart - Variable in class ome.model.core.Pixels
 
WAVESTART - Static variable in class ome.model.core.Pixels
 
Well - Class in ome.model.screen
These filter definitions are used by the security system to eliminate non-readable objects from queries.
Well() - Constructor for class ome.model.screen.Well
 
Well(Long) - Constructor for class ome.model.screen.Well
 
Well(Long, boolean) - Constructor for class ome.model.screen.Well
Main constructor.
Well(Plate) - Constructor for class ome.model.screen.Well
 
well - Variable in class ome.model.screen.WellSample
 
WELL - Static variable in class ome.model.screen.WellSample
 
Well.Details - Class in ome.model.screen
 
WellAnnotationLink - Class in ome.model.annotations
These filter definitions are used by the security system to eliminate non-readable objects from queries.
WellAnnotationLink() - Constructor for class ome.model.annotations.WellAnnotationLink
 
WellAnnotationLink(Long) - Constructor for class ome.model.annotations.WellAnnotationLink
 
WellAnnotationLink(Long, boolean) - Constructor for class ome.model.annotations.WellAnnotationLink
Main constructor.
WellAnnotationLink(IObject, IObject) - Constructor for class ome.model.annotations.WellAnnotationLink
 
WellAnnotationLink.Details - Class in ome.model.annotations
 
wellLinks - Variable in class ome.model.screen.Reagent
 
WELLLINKS - Static variable in class ome.model.screen.Reagent
 
WELLLINKSCOUNTPEROWNER - Static variable in class ome.model.screen.Reagent
 
wellOriginX - Variable in class ome.model.screen.Plate
 
WELLORIGINX - Static variable in class ome.model.screen.Plate
 
wellOriginY - Variable in class ome.model.screen.Plate
 
WELLORIGINY - Static variable in class ome.model.screen.Plate
 
WellReagentLink - Class in ome.model.screen
These filter definitions are used by the security system to eliminate non-readable objects from queries.
WellReagentLink() - Constructor for class ome.model.screen.WellReagentLink
 
WellReagentLink(Long) - Constructor for class ome.model.screen.WellReagentLink
 
WellReagentLink(Long, boolean) - Constructor for class ome.model.screen.WellReagentLink
Main constructor.
WellReagentLink(IObject, IObject) - Constructor for class ome.model.screen.WellReagentLink
 
WellReagentLink.Details - Class in ome.model.screen
 
wells - Variable in class ome.model.screen.Plate
 
WELLS - Static variable in class ome.model.screen.Plate
 
wellSample - Variable in class ome.model.screen.PlateAcquisition
 
WELLSAMPLE - Static variable in class ome.model.screen.PlateAcquisition
 
WellSample - Class in ome.model.screen
These filter definitions are used by the security system to eliminate non-readable objects from queries.
WellSample() - Constructor for class ome.model.screen.WellSample
 
WellSample(Long) - Constructor for class ome.model.screen.WellSample
 
WellSample(Long, boolean) - Constructor for class ome.model.screen.WellSample
Main constructor.
WellSample(Well, Image) - Constructor for class ome.model.screen.WellSample
 
WellSample.Details - Class in ome.model.screen
 
wellSamples - Variable in class ome.model.core.Image
 
WELLSAMPLES - Static variable in class ome.model.core.Image
 
wellSamples - Variable in class ome.model.screen.Well
 
WELLSAMPLES - Static variable in class ome.model.screen.Well
 
width - Variable in class ome.model.roi.Mask
 
WIDTH - Static variable in class ome.model.roi.Mask
 
width - Variable in class ome.model.roi.Rectangle
 
WIDTH - Static variable in class ome.model.roi.Rectangle
 
workingDistance - Variable in class ome.model.acquisition.Objective
 
WORKINGDISTANCE - Static variable in class ome.model.acquisition.Objective
 
WORLD_IMMUTABLE - Static variable in class ome.model.internal.Permissions
R_R_R_ : all can only read
WORLD_WRITEABLE - Static variable in class ome.model.internal.Permissions
RWRWRW : everyone can read and write

X

x - Variable in class ome.model.roi.Ellipse
 
X - Static variable in class ome.model.roi.Ellipse
 
x - Variable in class ome.model.roi.Label
 
X - Static variable in class ome.model.roi.Label
 
x - Variable in class ome.model.roi.Mask
 
X - Static variable in class ome.model.roi.Mask
 
x - Variable in class ome.model.roi.Point
 
X - Static variable in class ome.model.roi.Point
 
x - Variable in class ome.model.roi.Rectangle
 
X - Static variable in class ome.model.roi.Rectangle
 
x1 - Variable in class ome.model.roi.Line
 
X1 - Static variable in class ome.model.roi.Line
 
x2 - Variable in class ome.model.roi.Line
 
X2 - Static variable in class ome.model.roi.Line
 
xend - Variable in class ome.model.display.ContrastStretchingContext
 
XEND - Static variable in class ome.model.display.ContrastStretchingContext
 
XmlAnnotation - Class in ome.model.annotations
 
XmlAnnotation() - Constructor for class ome.model.annotations.XmlAnnotation
 
XmlAnnotation(Long) - Constructor for class ome.model.annotations.XmlAnnotation
 
XmlAnnotation(Long, boolean) - Constructor for class ome.model.annotations.XmlAnnotation
Main constructor.
xstart - Variable in class ome.model.display.ContrastStretchingContext
 
XSTART - Static variable in class ome.model.display.ContrastStretchingContext
 

Y

y - Variable in class ome.model.roi.Ellipse
 
Y - Static variable in class ome.model.roi.Ellipse
 
y - Variable in class ome.model.roi.Label
 
Y - Static variable in class ome.model.roi.Label
 
y - Variable in class ome.model.roi.Mask
 
Y - Static variable in class ome.model.roi.Mask
 
y - Variable in class ome.model.roi.Point
 
Y - Static variable in class ome.model.roi.Point
 
y - Variable in class ome.model.roi.Rectangle
 
Y - Static variable in class ome.model.roi.Rectangle
 
y1 - Variable in class ome.model.roi.Line
 
Y1 - Static variable in class ome.model.roi.Line
 
y2 - Variable in class ome.model.roi.Line
 
Y2 - Static variable in class ome.model.roi.Line
 
yend - Variable in class ome.model.display.ContrastStretchingContext
 
YEND - Static variable in class ome.model.display.ContrastStretchingContext
 
ystart - Variable in class ome.model.display.ContrastStretchingContext
 
YSTART - Static variable in class ome.model.display.ContrastStretchingContext
 

Z

zoom - Variable in class ome.model.acquisition.Detector
 
ZOOM - Static variable in class ome.model.acquisition.Detector
 
zoom - Variable in class ome.model.acquisition.DetectorSettings
 
ZOOM - Static variable in class ome.model.acquisition.DetectorSettings
 

_

_cache - Variable in class ome.util.ContextFilter
 
_context - Variable in class ome.model.internal.Details
 
_context - Variable in class ome.util.ContextFilter
 
_creation - Variable in class ome.model.internal.Details
 
_dynamicFields - Variable in class ome.model.acquisition.Detector
 
_dynamicFields - Variable in class ome.model.acquisition.DetectorSettings
 
_dynamicFields - Variable in class ome.model.acquisition.Dichroic
 
_dynamicFields - Variable in class ome.model.acquisition.Filter
 
_dynamicFields - Variable in class ome.model.acquisition.FilterSet
 
_dynamicFields - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
_dynamicFields - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
_dynamicFields - Variable in class ome.model.acquisition.ImagingEnvironment
 
_dynamicFields - Variable in class ome.model.acquisition.Instrument
 
_dynamicFields - Variable in class ome.model.acquisition.LightPath
 
_dynamicFields - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
_dynamicFields - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
_dynamicFields - Variable in class ome.model.acquisition.LightSettings
 
_dynamicFields - Variable in class ome.model.acquisition.LightSource
 
_dynamicFields - Variable in class ome.model.acquisition.Microscope
 
_dynamicFields - Variable in class ome.model.acquisition.Objective
 
_dynamicFields - Variable in class ome.model.acquisition.ObjectiveSettings
 
_dynamicFields - Variable in class ome.model.acquisition.OTF
 
_dynamicFields - Variable in class ome.model.acquisition.StageLabel
 
_dynamicFields - Variable in class ome.model.acquisition.TransmittanceRange
 
_dynamicFields - Variable in class ome.model.annotations.Annotation
 
_dynamicFields - Variable in class ome.model.annotations.AnnotationAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.ChannelAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.DatasetAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.DetectorAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.DichroicAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.ExperimenterAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.FilesetAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.FilterAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.FolderAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.ImageAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.InstrumentAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.LightPathAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.LightSourceAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.NamespaceAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.NodeAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.ObjectiveAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.OriginalFileAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.PlateAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.ProjectAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.ReagentAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.RoiAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.ScreenAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.SessionAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.ShapeAnnotationLink
 
_dynamicFields - Variable in class ome.model.annotations.WellAnnotationLink
 
_dynamicFields - Variable in class ome.model.containers.Dataset
 
_dynamicFields - Variable in class ome.model.containers.DatasetImageLink
 
_dynamicFields - Variable in class ome.model.containers.Folder
 
_dynamicFields - Variable in class ome.model.containers.FolderImageLink
 
_dynamicFields - Variable in class ome.model.containers.FolderRoiLink
 
_dynamicFields - Variable in class ome.model.containers.Project
 
_dynamicFields - Variable in class ome.model.containers.ProjectDatasetLink
 
_dynamicFields - Variable in class ome.model.core.Channel
 
_dynamicFields - Variable in class ome.model.core.Image
 
_dynamicFields - Variable in class ome.model.core.LogicalChannel
 
_dynamicFields - Variable in class ome.model.core.OriginalFile
 
_dynamicFields - Variable in class ome.model.core.Pixels
 
_dynamicFields - Variable in class ome.model.core.PixelsOriginalFileMap
 
_dynamicFields - Variable in class ome.model.core.PlaneInfo
 
_dynamicFields - Variable in class ome.model.display.ChannelBinding
 
_dynamicFields - Variable in class ome.model.display.CodomainMapContext
 
_dynamicFields - Variable in class ome.model.display.ProjectionDef
 
_dynamicFields - Variable in class ome.model.display.QuantumDef
 
_dynamicFields - Variable in class ome.model.display.RenderingDef
 
_dynamicFields - Variable in class ome.model.display.Thumbnail
 
_dynamicFields - Variable in class ome.model.enums.AcquisitionMode
 
_dynamicFields - Variable in class ome.model.enums.AdminPrivilege
 
_dynamicFields - Variable in class ome.model.enums.ArcType
 
_dynamicFields - Variable in class ome.model.enums.Binning
 
_dynamicFields - Variable in class ome.model.enums.ChecksumAlgorithm
 
_dynamicFields - Variable in class ome.model.enums.ContrastMethod
 
_dynamicFields - Variable in class ome.model.enums.Correction
 
_dynamicFields - Variable in class ome.model.enums.DetectorType
 
_dynamicFields - Variable in class ome.model.enums.DimensionOrder
 
_dynamicFields - Variable in class ome.model.enums.EventType
 
_dynamicFields - Variable in class ome.model.enums.ExperimentType
 
_dynamicFields - Variable in class ome.model.enums.Family
 
_dynamicFields - Variable in class ome.model.enums.FilamentType
 
_dynamicFields - Variable in class ome.model.enums.FilterType
 
_dynamicFields - Variable in class ome.model.enums.Format
 
_dynamicFields - Variable in class ome.model.enums.Illumination
 
_dynamicFields - Variable in class ome.model.enums.Immersion
 
_dynamicFields - Variable in class ome.model.enums.LaserMedium
 
_dynamicFields - Variable in class ome.model.enums.LaserType
 
_dynamicFields - Variable in class ome.model.enums.Medium
 
_dynamicFields - Variable in class ome.model.enums.MicrobeamManipulationType
 
_dynamicFields - Variable in class ome.model.enums.MicroscopeType
 
_dynamicFields - Variable in class ome.model.enums.PhotometricInterpretation
 
_dynamicFields - Variable in class ome.model.enums.PixelsType
 
_dynamicFields - Variable in class ome.model.enums.ProjectionAxis
 
_dynamicFields - Variable in class ome.model.enums.ProjectionType
 
_dynamicFields - Variable in class ome.model.enums.Pulse
 
_dynamicFields - Variable in class ome.model.enums.RenderingModel
 
_dynamicFields - Variable in class ome.model.experiment.Experiment
 
_dynamicFields - Variable in class ome.model.experiment.MicrobeamManipulation
 
_dynamicFields - Variable in class ome.model.fs.Fileset
 
_dynamicFields - Variable in class ome.model.fs.FilesetEntry
 
_dynamicFields - Variable in class ome.model.fs.FilesetJobLink
 
_dynamicFields - Variable in class ome.model.internal.Details
 
_dynamicFields - Variable in class ome.model.internal.Link
 
_dynamicFields - Variable in class ome.model.jobs.Job
 
_dynamicFields - Variable in class ome.model.jobs.JobOriginalFileLink
 
_dynamicFields - Variable in class ome.model.jobs.JobStatus
 
_dynamicFields - Variable in class ome.model.meta.DBPatch
 
_dynamicFields - Variable in class ome.model.meta.Event
 
_dynamicFields - Variable in class ome.model.meta.EventLog
 
_dynamicFields - Variable in class ome.model.meta.Experimenter
 
_dynamicFields - Variable in class ome.model.meta.ExperimenterGroup
 
_dynamicFields - Variable in class ome.model.meta.ExternalInfo
 
_dynamicFields - Variable in class ome.model.meta.GroupExperimenterMap
 
_dynamicFields - Variable in class ome.model.meta.Namespace
 
_dynamicFields - Variable in class ome.model.meta.Node
 
_dynamicFields - Variable in class ome.model.meta.Session
 
_dynamicFields - Variable in class ome.model.meta.ShareMember
 
_dynamicFields - Variable in class ome.model.roi.AffineTransform
 
_dynamicFields - Variable in class ome.model.roi.Roi
 
_dynamicFields - Variable in class ome.model.roi.Shape
 
_dynamicFields - Variable in class ome.model.screen.Plate
 
_dynamicFields - Variable in class ome.model.screen.PlateAcquisition
 
_dynamicFields - Variable in class ome.model.screen.Reagent
 
_dynamicFields - Variable in class ome.model.screen.Screen
 
_dynamicFields - Variable in class ome.model.screen.ScreenPlateLink
 
_dynamicFields - Variable in class ome.model.screen.Well
 
_dynamicFields - Variable in class ome.model.screen.WellReagentLink
 
_dynamicFields - Variable in class ome.model.screen.WellSample
 
_dynamicFields - Variable in class ome.model.stats.StatsInfo
 
_externalInfo - Variable in class ome.model.internal.Details
 
_filteredCollections - Variable in class ome.model.internal.Details
 
_group - Variable in class ome.model.internal.Details
 
_jdbc() - Method in class ome.util.actions.PostgresSqlAction
 
_jdbc() - Method in class ome.util.SqlAction.Impl
 
_loaded - Variable in class ome.model.acquisition.Detector
 
_loaded - Variable in class ome.model.acquisition.DetectorSettings
 
_loaded - Variable in class ome.model.acquisition.Dichroic
 
_loaded - Variable in class ome.model.acquisition.Filter
 
_loaded - Variable in class ome.model.acquisition.FilterSet
 
_loaded - Variable in class ome.model.acquisition.FilterSetEmissionFilterLink
 
_loaded - Variable in class ome.model.acquisition.FilterSetExcitationFilterLink
 
_loaded - Variable in class ome.model.acquisition.ImagingEnvironment
 
_loaded - Variable in class ome.model.acquisition.Instrument
 
_loaded - Variable in class ome.model.acquisition.LightPath
 
_loaded - Variable in class ome.model.acquisition.LightPathEmissionFilterLink
 
_loaded - Variable in class ome.model.acquisition.LightPathExcitationFilterLink
 
_loaded - Variable in class ome.model.acquisition.LightSettings
 
_loaded - Variable in class ome.model.acquisition.LightSource
 
_loaded - Variable in class ome.model.acquisition.Microscope
 
_loaded - Variable in class ome.model.acquisition.Objective
 
_loaded - Variable in class ome.model.acquisition.ObjectiveSettings
 
_loaded - Variable in class ome.model.acquisition.OTF
 
_loaded - Variable in class ome.model.acquisition.StageLabel
 
_loaded - Variable in class ome.model.acquisition.TransmittanceRange
 
_loaded - Variable in class ome.model.annotations.Annotation
 
_loaded - Variable in class ome.model.annotations.AnnotationAnnotationLink
 
_loaded - Variable in class ome.model.annotations.ChannelAnnotationLink
 
_loaded - Variable in class ome.model.annotations.DatasetAnnotationLink
 
_loaded - Variable in class ome.model.annotations.DetectorAnnotationLink
 
_loaded - Variable in class ome.model.annotations.DichroicAnnotationLink
 
_loaded - Variable in class ome.model.annotations.ExperimenterAnnotationLink
 
_loaded - Variable in class ome.model.annotations.ExperimenterGroupAnnotationLink
 
_loaded - Variable in class ome.model.annotations.FilesetAnnotationLink
 
_loaded - Variable in class ome.model.annotations.FilterAnnotationLink
 
_loaded - Variable in class ome.model.annotations.FolderAnnotationLink
 
_loaded - Variable in class ome.model.annotations.ImageAnnotationLink
 
_loaded - Variable in class ome.model.annotations.InstrumentAnnotationLink
 
_loaded - Variable in class ome.model.annotations.LightPathAnnotationLink
 
_loaded - Variable in class ome.model.annotations.LightSourceAnnotationLink
 
_loaded - Variable in class ome.model.annotations.NamespaceAnnotationLink
 
_loaded - Variable in class ome.model.annotations.NodeAnnotationLink
 
_loaded - Variable in class ome.model.annotations.ObjectiveAnnotationLink
 
_loaded - Variable in class ome.model.annotations.OriginalFileAnnotationLink
 
_loaded - Variable in class ome.model.annotations.PlaneInfoAnnotationLink
 
_loaded - Variable in class ome.model.annotations.PlateAcquisitionAnnotationLink
 
_loaded - Variable in class ome.model.annotations.PlateAnnotationLink
 
_loaded - Variable in class ome.model.annotations.ProjectAnnotationLink
 
_loaded - Variable in class ome.model.annotations.ReagentAnnotationLink
 
_loaded - Variable in class ome.model.annotations.RoiAnnotationLink
 
_loaded - Variable in class ome.model.annotations.ScreenAnnotationLink
 
_loaded - Variable in class ome.model.annotations.SessionAnnotationLink
 
_loaded - Variable in class ome.model.annotations.ShapeAnnotationLink
 
_loaded - Variable in class ome.model.annotations.WellAnnotationLink
 
_loaded - Variable in class ome.model.containers.Dataset
 
_loaded - Variable in class ome.model.containers.DatasetImageLink
 
_loaded - Variable in class ome.model.containers.Folder
 
_loaded - Variable in class ome.model.containers.FolderImageLink
 
_loaded - Variable in class ome.model.containers.FolderRoiLink
 
_loaded - Variable in class ome.model.containers.Project
 
_loaded - Variable in class ome.model.containers.ProjectDatasetLink
 
_loaded - Variable in class ome.model.core.Channel
 
_loaded - Variable in class ome.model.core.Image
 
_loaded - Variable in class ome.model.core.LogicalChannel
 
_loaded - Variable in class ome.model.core.OriginalFile
 
_loaded - Variable in class ome.model.core.Pixels
 
_loaded - Variable in class ome.model.core.PixelsOriginalFileMap
 
_loaded - Variable in class ome.model.core.PlaneInfo
 
_loaded - Variable in class ome.model.display.ChannelBinding
 
_loaded - Variable in class ome.model.display.CodomainMapContext
 
_loaded - Variable in class ome.model.display.ProjectionDef
 
_loaded - Variable in class ome.model.display.QuantumDef
 
_loaded - Variable in class ome.model.display.RenderingDef
 
_loaded - Variable in class ome.model.display.Thumbnail
 
_loaded - Variable in class ome.model.enums.AcquisitionMode
 
_loaded - Variable in class ome.model.enums.AdminPrivilege
 
_loaded - Variable in class ome.model.enums.ArcType
 
_loaded - Variable in class ome.model.enums.Binning
 
_loaded - Variable in class ome.model.enums.ChecksumAlgorithm
 
_loaded - Variable in class ome.model.enums.ContrastMethod
 
_loaded - Variable in class ome.model.enums.Correction
 
_loaded - Variable in class ome.model.enums.DetectorType
 
_loaded - Variable in class ome.model.enums.DimensionOrder
 
_loaded - Variable in class ome.model.enums.EventType
 
_loaded - Variable in class ome.model.enums.ExperimentType
 
_loaded - Variable in class ome.model.enums.Family
 
_loaded - Variable in class ome.model.enums.FilamentType
 
_loaded - Variable in class ome.model.enums.FilterType
 
_loaded - Variable in class ome.model.enums.Format
 
_loaded - Variable in class ome.model.enums.Illumination
 
_loaded - Variable in class ome.model.enums.Immersion
 
_loaded - Variable in class ome.model.enums.LaserMedium
 
_loaded - Variable in class ome.model.enums.LaserType
 
_loaded - Variable in class ome.model.enums.Medium
 
_loaded - Variable in class ome.model.enums.MicrobeamManipulationType
 
_loaded - Variable in class ome.model.enums.MicroscopeType
 
_loaded - Variable in class ome.model.enums.PhotometricInterpretation
 
_loaded - Variable in class ome.model.enums.PixelsType
 
_loaded - Variable in class ome.model.enums.ProjectionAxis
 
_loaded - Variable in class ome.model.enums.ProjectionType
 
_loaded - Variable in class ome.model.enums.Pulse
 
_loaded - Variable in class ome.model.enums.RenderingModel
 
_loaded - Variable in class ome.model.experiment.Experiment
 
_loaded - Variable in class ome.model.experiment.MicrobeamManipulation
 
_loaded - Variable in class ome.model.fs.Fileset
 
_loaded - Variable in class ome.model.fs.FilesetEntry
 
_loaded - Variable in class ome.model.fs.FilesetJobLink
 
_loaded - Variable in class ome.model.internal.Link
 
_loaded - Variable in class ome.model.jobs.Job
 
_loaded - Variable in class ome.model.jobs.JobOriginalFileLink
 
_loaded - Variable in class ome.model.jobs.JobStatus
 
_loaded - Variable in class ome.model.meta.DBPatch
 
_loaded - Variable in class ome.model.meta.Event
 
_loaded - Variable in class ome.model.meta.EventLog
 
_loaded - Variable in class ome.model.meta.Experimenter
 
_loaded - Variable in class ome.model.meta.ExperimenterGroup
 
_loaded - Variable in class ome.model.meta.ExternalInfo
 
_loaded - Variable in class ome.model.meta.GroupExperimenterMap
 
_loaded - Variable in class ome.model.meta.Namespace
 
_loaded - Variable in class ome.model.meta.Node
 
_loaded - Variable in class ome.model.meta.Session
 
_loaded - Variable in class ome.model.meta.ShareMember
 
_loaded - Variable in class ome.model.roi.AffineTransform
 
_loaded - Variable in class ome.model.roi.Roi
 
_loaded - Variable in class ome.model.roi.Shape
 
_loaded - Variable in class ome.model.screen.Plate
 
_loaded - Variable in class ome.model.screen.PlateAcquisition
 
_loaded - Variable in class ome.model.screen.Reagent
 
_loaded - Variable in class ome.model.screen.Screen
 
_loaded - Variable in class ome.model.screen.ScreenPlateLink
 
_loaded - Variable in class ome.model.screen.Well
 
_loaded - Variable in class ome.model.screen.WellReagentLink
 
_loaded - Variable in class ome.model.screen.WellSample
 
_loaded - Variable in class ome.model.stats.StatsInfo
 
_lookup(String) - Method in class ome.util.actions.PostgresSqlAction
 
_lookup(String) - Method in class ome.util.SqlAction.Impl
 
_namedJdbc() - Method in class ome.util.actions.PostgresSqlAction
 
_namedJdbc() - Method in class ome.util.SqlAction.Impl
 
_owner - Variable in class ome.model.internal.Details
 
_perms - Variable in class ome.model.internal.Details
 
_update - Variable in class ome.model.internal.Details
 
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