ome.api

Interface ThumbnailStore

All Superinterfaces:

ServiceInterface, StatefulServiceInterface

public interface ThumbnailStore
extends StatefulServiceInterface

Provides methods for dealing with thumbnails. Provision is provided to retrieve thumbnails using the on-disk cache (provided by ROMIO) or on the fly.

NOTE: The calling order for the service is as follows:

1. setPixelsId()
2. any of the thumbnail accessor methods or resetDefaults()

Since:

3.0

Method Summary

Modifier and Type	Method and Description
void	createThumbnail(java.lang.Integer sizeX, java.lang.Integer sizeY) Creates a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) in the on-disk cache.
void	createThumbnails() Creates thumbnails for a pixels set using a given set of rendering settings (RenderingDef) in the on-disk cache for every sizeX/sizeY combination already cached.
void	createThumbnailsByLongestSideSet(java.lang.Integer size, java.util.Set<java.lang.Long> pixelsIds) Creates thumbnails for a number of pixels sets using a given set of rendering settings (RenderingDef) in the on-disk cache.
long	getRenderingDefId() Return the id of the RenderingDef loaded in this instance.
byte[]	getThumbnail(java.lang.Integer sizeX, java.lang.Integer sizeY) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef).
byte[]	getThumbnailByLongestSide(java.lang.Integer size) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef).
byte[]	getThumbnailByLongestSideDirect(java.lang.Integer size) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef).
java.util.Map<java.lang.Long,byte[]>	getThumbnailByLongestSideSet(java.lang.Integer size, java.util.Set<java.lang.Long> pixelsIds) Retrieves a number of thumbnails for pixels sets using given sets of rendering settings (RenderingDef).
byte[]	getThumbnailDirect(java.lang.Integer sizeX, java.lang.Integer sizeY) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef).
byte[]	getThumbnailForSectionByLongestSideDirect(int theZ, int theT, java.lang.Integer size) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) for a particular section.
byte[]	getThumbnailForSectionDirect(int theZ, int theT, java.lang.Integer sizeX, java.lang.Integer sizeY) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) for a particular section.
java.util.Map<java.lang.Long,byte[]>	getThumbnailSet(java.lang.Integer sizeX, java.lang.Integer sizeY, java.util.Set<java.lang.Long> pixelsIds) Retrieves a number of thumbnails for pixels sets using given sets of rendering settings (RenderingDef).
byte[]	getThumbnailWithoutDefault(java.lang.Integer sizeX, java.lang.Integer sizeY) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef).
boolean	isInProgress() This returns the last available in progress state for a thumbnail.
void	resetDefaults() Resets the rendering definition for the active pixels set to its default settings.
boolean	setPixelsId(long pixelsId) This method manages the state of the service; it must be invoked before using any other methods.
void	setRenderingDefId(long renderingDefId) This method manages the state of the service; it should be invoked directly after setPixelsId(long).
boolean	thumbnailExists(java.lang.Integer sizeX, java.lang.Integer sizeY) Checks if a thumbnail of a particular size exists for a pixels set.

Methods inherited from interface ome.api.StatefulServiceInterface

activate, close, getCurrentEventContext, passivate

Method Detail

setPixelsId

boolean setPixelsId(long pixelsId)

This method manages the state of the service; it must be invoked before using any other methods. As the

ThumbnailStore

relies on the

RenderingEngine

, a valid rendering definition must be available for it to work.

Parameters:

pixelsId - an Pixels id.

Returns:

true if a RenderingDef exists for the Pixels set, otherwise false

Throws:

ApiUsageException - if no pixels object exists with the ID pixelsId.

isInProgress

boolean isInProgress()

This returns the last available in progress state for a thumbnail. Its return value is only expected to be valid after the call to any of the individual thumbnail retrieval methods.

Returns:

true if the image is in the process of being imported or a pyramid is being generated for it.

setRenderingDefId

void setRenderingDefId(long renderingDefId)

This method manages the state of the service; it should be invoked directly after setPixelsId(long). If it is not invoked with a valid rendering definition ID before using the thumbnail accessor methods execution continues as if renderingDefId were set to null.

Parameters:

renderingDefId - an RenderingDef id. null specifies the user's currently active rendering settings to be used.

Throws:

ValidationException - if no rendering definition exists with the ID renderingDefId.

getRenderingDefId

long getRenderingDefId()

Return the id of the RenderingDef loaded in this instance.

getThumbnail

byte[] getThumbnail(java.lang.Integer sizeX,
                    java.lang.Integer sizeY)

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef). If the thumbnail exists in the on-disk cache it will be returned directly, otherwise it will be created as in getThumbnailDirect(Integer, Integer), placed in the on-disk cache and returned.

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

Throws:

ApiUsageException - if:

• sizeX is greater than pixels.sizeX
• sizeX is negative
• sizeY is greater than pixels.sizeY
• sizeY is negative
• setPixelsId(long) has not yet been called

See Also:

getThumbnailDirect(Integer, Integer)

getThumbnailWithoutDefault

byte[] getThumbnailWithoutDefault(java.lang.Integer sizeX,
                                  java.lang.Integer sizeY)

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef). If the thumbnail exists in the on-disk cache it will be returned directly, otherwise it will be created as in getThumbnailDirect(java.lang.Integer, java.lang.Integer), placed in the on-disk cache and returned. If the thumbnail is still to be generated, an empty array will be returned.

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer

Throws:

ApiUsageException - if:

• sizeX is greater than pixels.sizeX
• sizeX is negative
• sizeY is greater than pixels.sizeY
• sizeY is negative
• setPixelsId(long) has not yet been called

See Also:

getThumbnailDirect(java.lang.Integer, java.lang.Integer)

getThumbnailSet

java.util.Map<java.lang.Long,byte[]> getThumbnailSet(java.lang.Integer sizeX,
                                                     java.lang.Integer sizeY,
                                                     java.util.Set<java.lang.Long> pixelsIds)

Retrieves a number of thumbnails for pixels sets using given sets of rendering settings (RenderingDef). If the thumbnails exist in the on-disk cache they will be returned directly, otherwise they will be created as in getThumbnailDirect(Integer, Integer), placed in the on-disk cache and returned. Unlike the other thumbnail retrieval methods, this method may be called without first calling setPixelsId(long).

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

pixelsIds - the Pixels sets to retrieve thumbnails for.

Returns:

a Map whose keys are pixels ids and values are JPEG thumbnail byte buffers or null if an exception was thrown while attempting to retrieve the thumbnail for that particular Pixels set.

See Also:

getThumbnail(Integer, Integer)

getThumbnailByLongestSideSet

java.util.Map<java.lang.Long,byte[]> getThumbnailByLongestSideSet(java.lang.Integer size,
                                                                  java.util.Set<java.lang.Long> pixelsIds)

Retrieves a number of thumbnails for pixels sets using given sets of rendering settings (RenderingDef). If the Thumbnails exist in the on-disk cache they will be returned directly, otherwise they will be created as in getThumbnailByLongestSideDirect(java.lang.Integer). The longest side of the image will be used to calculate the size for the smaller side in order to keep the aspect ratio of the original image. Unlike the other thumbnail retrieval methods, this method may be called without first calling setPixelsId(long).

Parameters:

size - the size of the longest side of the thumbnail requested. null specifies the default size of 48.

pixelsIds - the Pixels sets to retrieve thumbnails for.

Returns:

a Map whose keys are pixels ids and values are JPEG thumbnail byte buffers or null if an exception was thrown while attempting to retrieve the thumbnail for that particular Pixels set.

See Also:

getThumbnailSet(Integer, Integer, Set)

getThumbnailByLongestSide

byte[] getThumbnailByLongestSide(java.lang.Integer size)

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef). If the thumbnail exists in the on-disk cache it will bereturned directly, otherwise it will be created as in getThumbnailDirect(Integer, Integer), placed in the on-disk cache and returned. The longest side of the image will be used to calculate the size for the smaller side in order to keep the aspect ratio of the original image.

Parameters:

size - the size of the longest side of the thumbnail requested. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

Throws:

ApiUsageException - if:

• size is greater than pixels.sizeX and pixels.sizeY
• setPixelsId(long) has not yet been called

See Also:

getThumbnail(Integer, Integer)

getThumbnailDirect

byte[] getThumbnailDirect(java.lang.Integer sizeX,
                          java.lang.Integer sizeY)

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef). The Thumbnail will always be created directly, ignoring the on-disk cache.

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

Throws:

ApiUsageException - if:

• sizeX is greater than pixels.sizeX
• sizeX is negative
• sizeY is greater than pixels.sizeY
• sizeY is negative
• setPixelsId(long) has not yet been called

See Also:

getThumbnail(Integer, Integer)

getThumbnailForSectionDirect

byte[] getThumbnailForSectionDirect(int theZ,
                                    int theT,
                                    java.lang.Integer sizeX,
                                    java.lang.Integer sizeY)

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) for a particular section. The Thumbnail will always be created directly, ignoring the on-disk cache.

Parameters:

theZ - the optical section (offset across the Z-axis) to use.

theT - the timepoint (offset across the T-axis) to use.

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

Throws:

ApiUsageException - if:

• sizeX is greater than pixels.sizeX
• sizeX is negative
• sizeY is greater than pixels.sizeY
• sizeY is negative
• theZ is out of range
• theT is out of range
• setPixelsId(long) has not yet been called

See Also:

getThumbnail(Integer, Integer)

getThumbnailByLongestSideDirect

byte[] getThumbnailByLongestSideDirect(java.lang.Integer size)

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef). The Thumbnail will always be created directly, ignoring the on-disk cache. The longest side of the image will be used to calculate the size for the smaller side in order to keep the aspect ratio of the original image.

Parameters:

size - the size of the longest side of the thumbnail requested. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

Throws:

ApiUsageException - if:

• size is greater than pixels.sizeX and pixels.sizeY
• setPixelsId(long) has not yet been called

See Also:

getThumbnailDirect(Integer, Integer)

getThumbnailForSectionByLongestSideDirect

byte[] getThumbnailForSectionByLongestSideDirect(int theZ,
                                                 int theT,
                                                 java.lang.Integer size)

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) for a particular section. The Thumbnail will always be created directly, ignoring the on-disk cache. The longest side of the image will be used to calculate the size for the smaller side in order to keep the aspect ratio of the original image.

Parameters:

theZ - the optical section (offset across the Z-axis) to use.

theT - the timepoint (offset across the T-axis) to use.

size - the size of the longest side of the thumbnail requested. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

Throws:

ApiUsageException - if:

• size is greater than pixels.sizeX and pixels.sizeY
• setPixelsId(long) has not yet been called

See Also:

getThumbnailDirect(Integer, Integer)

createThumbnail

void createThumbnail(java.lang.Integer sizeX,
                     java.lang.Integer sizeY)

Creates a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) in the on-disk cache.

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

Throws:

ApiUsageException - if:

• sizeX is greater than pixels.sizeX
• sizeX is negative
• sizeY is greater than pixels.sizeY
• sizeY is negative
• setPixelsId(long) has not yet been called

See Also:

getThumbnail(Integer, Integer), getThumbnailDirect(Integer, Integer)

createThumbnailsByLongestSideSet

void createThumbnailsByLongestSideSet(java.lang.Integer size,
                                      java.util.Set<java.lang.Long> pixelsIds)

Creates thumbnails for a number of pixels sets using a given set of rendering settings (RenderingDef) in the on-disk cache. Unlike the other thumbnail creation methods, this method may be called without first calling setPixelsId(long). This method will not reset or modify rendering settings in any way. If rendering settings for a pixels set are not present, thumbnail creation for that pixels set will not be performed.

Parameters:

size - the size of the longest side of the thumbnail requested. null specifies the default size of 48.

pixelsIds - the Pixels sets to retrieve thumbnails for.

Throws:

ApiUsageException - if:

• size is greater than pixels.sizeX and pixels.sizeY
• size is negative

See Also:

createThumbnail(Integer, Integer), createThumbnails()

createThumbnails

void createThumbnails()

Creates thumbnails for a pixels set using a given set of rendering settings (RenderingDef) in the on-disk cache for every sizeX/sizeY combination already cached.

See Also:

getThumbnail(Integer, Integer), getThumbnailDirect(Integer, Integer)

thumbnailExists

boolean thumbnailExists(java.lang.Integer sizeX,
                        java.lang.Integer sizeY)

Checks if a thumbnail of a particular size exists for a pixels set.

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies use the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies user the default size of 48.

Throws:

ApiUsageException - if:

• sizeX is negative
• sizeY is negative
• setPixelsId(long) has not yet been called

See Also:

getThumbnail(Integer, Integer), getThumbnailDirect(Integer, Integer)

resetDefaults

void resetDefaults()

Resets the rendering definition for the active pixels set to its default settings.