omero.api

Class _IProjectionDisp

java.lang.Object

Ice.ObjectImpl

omero.api._IProjectionDisp

All Implemented Interfaces:

Ice.Object, java.io.Serializable, java.lang.Cloneable, _IProjectionOperations, _IProjectionOperationsNC, _ServiceInterfaceOperations, _ServiceInterfaceOperationsNC, IProjection, ServiceInterface

Direct Known Subclasses:

_IProjectionTie

public abstract class _IProjectionDisp
extends Ice.ObjectImpl
implements IProjection

Provides methods for performing projections of Pixels sets.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String[]	__ids
static long	serialVersionUID

Fields inherited from interface omero.api.IProjection

ice_staticId

Constructor Summary

Constructors

Constructor and Description
_IProjectionDisp()

Method Summary

Modifier and Type	Method and Description
static Ice.DispatchStatus	___projectPixels(IProjection __obj, IceInternal.Incoming __inS, Ice.Current __current)
static Ice.DispatchStatus	___projectStack(IProjection __obj, IceInternal.Incoming __inS, Ice.Current __current)
Ice.DispatchStatus	__dispatch(IceInternal.Incoming in, Ice.Current __current)
protected void	__readImpl(IceInternal.BasicStream __is)
protected void	__writeImpl(IceInternal.BasicStream __os)
protected void	ice_copyStateFrom(Ice.Object __obj)
java.lang.String	ice_id()
java.lang.String	ice_id(Ice.Current __current)
java.lang.String[]	ice_ids()
java.lang.String[]	ice_ids(Ice.Current __current)
boolean	ice_isA(java.lang.String s)
boolean	ice_isA(java.lang.String s, Ice.Current __current)
static java.lang.String	ice_staticId()
void	projectPixels_async(AMD_IProjection_projectPixels __cb, long pixelsId, PixelsType pixelsType, ProjectionType algorithm, int tStart, int tEnd, java.util.List<java.lang.Integer> channelList, int stepping, int zStart, int zEnd, java.lang.String name) Performs a projection through selected optical sections and optical sections for a given set of time points of a Pixels set.
void	projectStack_async(AMD_IProjection_projectStack __cb, long pixelsId, PixelsType pixelsType, ProjectionType algorithm, int timepoint, int channelIndex, int stepping, int start, int end) Performs a projection through the optical sections of a particular wavelength at a given time point of a Pixels set.

Methods inherited from class Ice.ObjectImpl

___ice_id, ___ice_ids, ___ice_isA, ___ice_ping, __checkMode, __read, __read, __readImpl, __write, __write, __writeImpl, clone, ice_dispatch, ice_dispatch, ice_operationAttributes, ice_ping, ice_ping, ice_postUnmarshal, ice_preMarshal

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface omero.api._IProjectionOperations

projectPixels_async, projectStack_async

Methods inherited from interface Ice.Object

__read, __read, __write, __write, clone, ice_dispatch, ice_dispatch, ice_operationAttributes, ice_ping, ice_ping, ice_postUnmarshal, ice_preMarshal

Field Detail

__ids

public static final java.lang.String[] __ids

serialVersionUID

public static final long serialVersionUID

See Also:

Constant Field Values

Constructor Detail

_IProjectionDisp

public _IProjectionDisp()

Method Detail

ice_copyStateFrom

protected void ice_copyStateFrom(Ice.Object __obj)
                          throws java.lang.CloneNotSupportedException

Throws:

java.lang.CloneNotSupportedException

ice_isA

public boolean ice_isA(java.lang.String s)

Specified by:

ice_isA in interface Ice.Object

Overrides:

ice_isA in class Ice.ObjectImpl

ice_isA

public boolean ice_isA(java.lang.String s,
                       Ice.Current __current)

Specified by:

ice_isA in interface Ice.Object

Overrides:

ice_isA in class Ice.ObjectImpl

ice_ids

public java.lang.String[] ice_ids()

Specified by:

ice_ids in interface Ice.Object

Overrides:

ice_ids in class Ice.ObjectImpl

ice_ids

public java.lang.String[] ice_ids(Ice.Current __current)

Specified by:

ice_ids in interface Ice.Object

Overrides:

ice_ids in class Ice.ObjectImpl

ice_id

public java.lang.String ice_id()

Specified by:

ice_id in interface Ice.Object

Overrides:

ice_id in class Ice.ObjectImpl

ice_id

public java.lang.String ice_id(Ice.Current __current)

Specified by:

ice_id in interface Ice.Object

Overrides:

ice_id in class Ice.ObjectImpl

ice_staticId

public static java.lang.String ice_staticId()

projectPixels_async

public final void projectPixels_async(AMD_IProjection_projectPixels __cb,
                                      long pixelsId,
                                      PixelsType pixelsType,
                                      ProjectionType algorithm,
                                      int tStart,
                                      int tEnd,
                                      java.util.List<java.lang.Integer> channelList,
                                      int stepping,
                                      int zStart,
                                      int zEnd,
                                      java.lang.String name)
                               throws ServerError

Performs a projection through selected optical sections and optical sections for a given set of time points of a Pixels set. The Image which is linked to the Pixels set will be copied using omero.api.IPixels.copyAndResizeImage.

Specified by:

projectPixels_async in interface _IProjectionOperationsNC

Parameters:

__cb - The callback object for the operation.

pixelsId - The source Pixels set Id.

algorithm - MAXIMUM_INTENSITY, MEAN_INTENSITY or SUM_INTENSITY. NOTE: When performing a SUM_INTENSITY projection, pixel values will be pinned to the maximum pixel value of the destination Pixels type.

tStart - Timepoint to start projecting from.

channelList - List of the channel indexes to use while calculating the projection.

stepping - Stepping value to use while calculating the projection. For example, stepping=1 will use every optical section from start to end where stepping=2 will use every other section from start to end to perform the projection.

zStart - Optical section to start projecting from.

name - Name for the newly created image. If null the name of the Image linked to the Pixels qualified by pixelsId will be used with a Projection suffix. For example, GFP-H2B Image of HeLa Cells will have an Image name of GFP-H2B Image of HeLa Cells Projection used for the projection.

Throws:

ValidationException - Where:

• algorithm is unknown
• tStart is out of range
• tEnd is out of range
• tStart is greater than tEnd
• channelList is null or has indexes out of range
• zStart is out of range
• zEnd is out of range
• zStart is greater than zEnd
• the Pixels set qualified by pixelsId is not locatable.

ServerError

projectStack_async

public final void projectStack_async(AMD_IProjection_projectStack __cb,
                                     long pixelsId,
                                     PixelsType pixelsType,
                                     ProjectionType algorithm,
                                     int timepoint,
                                     int channelIndex,
                                     int stepping,
                                     int start,
                                     int end)
                              throws ServerError

Performs a projection through the optical sections of a particular wavelength at a given time point of a Pixels set.

Specified by:

projectStack_async in interface _IProjectionOperationsNC

Parameters:

__cb - The callback object for the operation.

pixelsId - The source Pixels set Id.

algorithm - MAXIMUM_INTENSITY, MEAN_INTENSITY or SUM_INTENSITY. NOTE: When performing a SUM_INTENSITY projection, pixel values will be pinned to the maximum pixel value of the destination Pixels type.

timepoint - Timepoint to perform the projection.

stepping - Stepping value to use while calculating the projection. For example, stepping=1 will use every optical section from start to end where stepping=2 will use every other section from start to end to perform the projection.

start - Optical section to start projecting from.

Throws:

ValidationException - Where:

• algorithm is unknown
• timepoint is out of range
• channelIndex is out of range
• start is out of range
• end is out of range
• start is greater than end
• the Pixels set qualified by pixelsId is not locatable.

ServerError

___projectStack

public static Ice.DispatchStatus ___projectStack(IProjection __obj,
                                                 IceInternal.Incoming __inS,
                                                 Ice.Current __current)

___projectPixels

public static Ice.DispatchStatus ___projectPixels(IProjection __obj,
                                                  IceInternal.Incoming __inS,
                                                  Ice.Current __current)

__dispatch

public Ice.DispatchStatus __dispatch(IceInternal.Incoming in,
                                     Ice.Current __current)

Specified by:

__dispatch in interface Ice.Object

Overrides:

__dispatch in class Ice.ObjectImpl

__writeImpl

protected void __writeImpl(IceInternal.BasicStream __os)

Overrides:

__writeImpl in class Ice.ObjectImpl

__readImpl

protected void __readImpl(IceInternal.BasicStream __is)

Overrides:

__readImpl in class Ice.ObjectImpl