Package omero.grid

Interface Summary

Interface	Description
_ClusterNodeOperations	Interface implemented by each server instance.
_ClusterNodeOperationsNC	Interface implemented by each server instance.
_ImportProcessOperations	User configuration options.
_ImportProcessOperationsNC	User configuration options.
_InteractiveProcessorOperations	Client facing interface to the background processing framework.
_InteractiveProcessorOperationsNC	Client facing interface to the background processing framework.
_InternalRepositoryOperations	Internal portion of the API used for management.
_InternalRepositoryOperationsNC	Internal portion of the API used for management.
_ManagedRepositoryOperations	FS-enabled repository which can convert uploaded files into Images by using Bio-Formats to import them.
_ManagedRepositoryOperationsNC	FS-enabled repository which can convert uploaded files into Images by using Bio-Formats to import them.
_ProcessCallbackOperations	Callback which can be attached to a Process with notification of any of the possible ends-of-life that a Process might experience
_ProcessCallbackOperationsNC	Callback which can be attached to a Process with notification of any of the possible ends-of-life that a Process might experience
_ProcessOperations	Thin wrapper around a system-level process.
_ProcessOperationsNC	Thin wrapper around a system-level process.
_ProcessorCallbackOperations	Internal callback interface which is passed to the Processor.accepts method to query whether or not a processor will accept a certain operation.
_ProcessorCallbackOperationsNC	Internal callback interface which is passed to the Processor.accepts method to query whether or not a processor will accept a certain operation.
_ProcessorOperations	Simple controller for Processes.
_ProcessorOperationsNC	Simple controller for Processes.
_RepositoryOperations	Client-accessible interface representing a single mount point on the server-side.
_RepositoryOperationsNC	Client-accessible interface representing a single mount point on the server-side.
_ScriptProcessOperations	Extension of the Process interface which is returned by IScript when an ScriptJob is launched.
_ScriptProcessOperationsNC	Extension of the Process interface which is returned by IScript when an ScriptJob is launched.
_SharedResourcesOperations	Resource manager provided by each Blitz session for acquiring shared resources in the OmeroGrid.
_SharedResourcesOperationsNC	Resource manager provided by each Blitz session for acquiring shared resources in the OmeroGrid.
_TableOperations
_TableOperationsNC
_TablesOperations
_TablesOperationsNC
BoolColumnPrx
ClusterNode	Interface implemented by each server instance.
ClusterNodePrx	Interface implemented by each server instance.
ColumnPrx	Base type for dealing working with tabular data.
DataPrx
DatasetColumnPrx
DoubleArrayColumnPrx
DoubleColumnPrx
FileColumnPrx
FloatArrayColumnPrx
ImageColumnPrx
ImportLocationPrx	Returned by ManagedRepository.importFileset with the information needed to proceed with an FS import.
ImportProcess	User configuration options.
ImportProcessPrx	User configuration options.
ImportRequestPrx	Command object which will be used to create the Handle instances passed back by the ImportProcess.
ImportResponsePrx	Successful response returned from execution of ImportRequest.
ImportSettingsPrx	User configuration options.
InteractiveProcessor	Client facing interface to the background processing framework.
InteractiveProcessorPrx	Client facing interface to the background processing framework.
InternalRepository	Internal portion of the API used for management.
InternalRepositoryPrx	Internal portion of the API used for management.
JobParamsPrx	Complete job description with all input and output Params.
LongArrayColumnPrx
LongColumnPrx
ManagedRepository	FS-enabled repository which can convert uploaded files into Images by using Bio-Formats to import them.
ManagedRepositoryPrx	FS-enabled repository which can convert uploaded files into Images by using Bio-Formats to import them.
MaskColumnPrx	Column requiring special handling.
ParamPrx	A single parameter to a Job.
ParamsHelper.Acquirer	Interface added in order to allow ParamHelper instances to use methods from SharedResourcesI.
PlateColumnPrx
Process	Thin wrapper around a system-level process.
ProcessCallback	Callback which can be attached to a Process with notification of any of the possible ends-of-life that a Process might experience
ProcessCallbackPrx	Callback which can be attached to a Process with notification of any of the possible ends-of-life that a Process might experience
Processor	Simple controller for Processes.
ProcessorCallback	Internal callback interface which is passed to the Processor.accepts method to query whether or not a processor will accept a certain operation.
ProcessorCallbackPrx	Internal callback interface which is passed to the Processor.accepts method to query whether or not a processor will accept a certain operation.
ProcessorPrx	Simple controller for Processes.
ProcessPrx	Thin wrapper around a system-level process.
RawAccessRequestPrx	Deprecated Not intended for use by production clients.
Repository	Client-accessible interface representing a single mount point on the server-side.
RepositoryPrx	Client-accessible interface representing a single mount point on the server-side.
RoiColumnPrx
ScriptProcess	Extension of the Process interface which is returned by IScript when an ScriptJob is launched.
ScriptProcessPrx	Extension of the Process interface which is returned by IScript when an ScriptJob is launched.
SharedResources	Resource manager provided by each Blitz session for acquiring shared resources in the OmeroGrid.
SharedResourcesPrx	Resource manager provided by each Blitz session for acquiring shared resources in the OmeroGrid.
StringColumnPrx
Table
TablePrx
Tables
TablesPrx
WellColumnPrx

Class Summary

Class	Description
_ClusterNodeDisp	Interface implemented by each server instance.
_ClusterNodeTie
_ImportProcessDisp	User configuration options.
_ImportProcessTie
_InteractiveProcessorDisp	Client facing interface to the background processing framework.
_InteractiveProcessorTie
_InternalRepositoryDisp	Internal portion of the API used for management.
_InternalRepositoryTie
_ManagedRepositoryDisp	FS-enabled repository which can convert uploaded files into Images by using Bio-Formats to import them.
_ManagedRepositoryTie
_ProcessCallbackDisp	Callback which can be attached to a Process with notification of any of the possible ends-of-life that a Process might experience
_ProcessCallbackTie
_ProcessDisp	Thin wrapper around a system-level process.
_ProcessorCallbackDisp	Internal callback interface which is passed to the Processor.accepts method to query whether or not a processor will accept a certain operation.
_ProcessorCallbackTie
_ProcessorDisp	Simple controller for Processes.
_ProcessorTie
_ProcessTie
_RepositoryDisp	Client-accessible interface representing a single mount point on the server-side.
_RepositoryTie
_ScriptProcessDisp	Extension of the Process interface which is returned by IScript when an ScriptJob is launched.
_ScriptProcessTie
_SharedResourcesDisp	Resource manager provided by each Blitz session for acquiring shared resources in the OmeroGrid.
_SharedResourcesTie
_TableDisp
_TablesDisp
_TablesTie
_TableTie
BoolColumn
BoolColumnHolder
BoolColumnPrxHelper	Provides type-specific helper functions.
BoolColumnPrxHolder
Callback_ClusterNode_down	Let all cluster nodes know that the instance with this uuid is going down.
Callback_ClusterNode_getNodeUuid	Each node acquires the uuids of all other active nodes on start up.
Callback_ImportProcess_getHandle	Reacquire the handle which was returned by verifyUpload.
Callback_ImportProcess_getImportSettings
Callback_ImportProcess_getUploader	Step 1: Returns a RawFileStore that can be used to upload one of the used files.
Callback_ImportProcess_getUploadOffset	In case an upload must be resumed, this provides the location of the last successful upload.
Callback_ImportProcess_verifyUpload	Step 2: Passes a set of client-side calculated hashes to the server for verifying that all of the files were correctly uploaded.
Callback_InteractiveProcessor_execute	Executes an instance of the job returned by getJob() using the given map as inputs.
Callback_InteractiveProcessor_expires	Returns the system clock time in milliseconds since the epoch at which this processor will be reaped.
Callback_InteractiveProcessor_getJob	Returns the job which defines this processor.
Callback_InteractiveProcessor_getResults	Retrieve the results for the given process.
Callback_InteractiveProcessor_params	Retrieves the parameters needed to be passed in an execution and the results which will be passed back out.
Callback_InteractiveProcessor_setDetach	Sets whether or not cancel will be called on the current Process on stop.
Callback_InteractiveProcessor_stop	Clears the current execution of Job from the processor to prepare for another execution.
Callback_InternalRepository_createRawFileStore
Callback_InternalRepository_createRawPixelsStore
Callback_InternalRepository_createRenderingEngine
Callback_InternalRepository_createThumbnailStore
Callback_InternalRepository_getDescription
Callback_InternalRepository_getFilePath
Callback_InternalRepository_getProxy
Callback_InternalRepository_rawAccess
Callback_ManagedRepository_importFileset	Returns an ImportProcess which can be used to upload files.
Callback_ManagedRepository_importPaths	For clients without access to Bio-Formats, the simplified importPaths method allows passing solely the absolute path of the files to be uploaded (no directories) and all configuration happens server-side.
Callback_ManagedRepository_listChecksumAlgorithms	Return the list of checksum algorithms supported by this repository for verifying the integrity of uploaded files.
Callback_ManagedRepository_listImports	List imports that are currently running in this importer.
Callback_ManagedRepository_setChecksumAlgorithm	Set the checksum algorithm for the original files identified by the given IDs and calculate their checksum accordingly.
Callback_ManagedRepository_suggestChecksumAlgorithm	Suggest a checksum algorithm to use for ImportSettings.checksumAlgorithm according to the preferences set by the server administrator.
Callback_ManagedRepository_verifyChecksums	Verify the checksum for the original files identified by the given IDs.
Callback_Process_cancel	Signal to the Process that it should terminate.
Callback_Process_kill	Terminate the Process immediately.
Callback_Process_poll	Returns the return code of the process, or null if unfinished.
Callback_Process_registerCallback	Add a callback for end-of-life events
Callback_Process_shutdown	First attempts cancel() several times and finally resorts to kill to force the process to shutdown cleanly.
Callback_Process_unregisterCallback	Remove a callback for end-of-life events
Callback_Process_wait	Blocks until poll() would return a non-null return code.
Callback_ProcessCallback_processCancelled	cancel() was called on this Process.
Callback_ProcessCallback_processFinished	Process terminated normally.
Callback_ProcessCallback_processKilled	kill() was called on this Process.
Callback_Processor_parseJob	Parses a job and returns metadata definition required for properly submitting the job.
Callback_Processor_processJob	Starts a process based on the given job If this processor cannot handle the given job, a null process will be returned.
Callback_Processor_requestRunning	Used by servers to find out what jobs are still active.
Callback_Processor_willAccept	Called by SharedResources to find a suitable target for omero.grid.SharedResources.acquireProcessor.
Callback_ProcessorCallback_isAccepted
Callback_ProcessorCallback_isProxyAccepted
Callback_ProcessorCallback_responseRunning
Callback_Repository_deletePaths	Delete several individual paths.
Callback_Repository_file	Returns a special RawFileStore which permits only the operations set out in the options string ""wb"", ""a+"", etc.
Callback_Repository_fileById
Callback_Repository_fileExists	Returns true if the file or path exists within the repository.
Callback_Repository_list	Returns a set of strings naming the files and directories in the directory denoted by an abstract pathname.
Callback_Repository_listFiles	Returns an array of abstract pathname objects denoting the files in the directory denoted by an abstract pathname.
Callback_Repository_makeDir	Create a directory at the given path.
Callback_Repository_mimetype	Returns the best-guess mimetype for the given path.
Callback_Repository_register	Create an OriginalFile in the database for the given path.
Callback_Repository_root	Return the OriginalFile descriptor for this Repository.
Callback_Repository_treeList	Similar to list but recursive and returns only primitive values for the file at each location.
Callback_ScriptProcess_close	Closes this process and frees server resources attached to it.
Callback_ScriptProcess_getJob	Returns the job which started this process.
Callback_ScriptProcess_getResults	Returns the results immediately if present.
Callback_ScriptProcess_setMessage	Sets the message on the ScriptJob object.
Callback_SharedResources_acquireProcessor	Waits up to seconds to acquire a slot in a processor which can handle the given job.
Callback_SharedResources_addProcessor	Registers a Processor for Storm notifications so that other sessions can query whether or not a given processor would accept a given task.
Callback_SharedResources_areTablesEnabled	Returns true if a Tables service is active in the grid.
Callback_SharedResources_getScriptRepository	Returns the single (possibly mirrored) script repository which makes all official scripts available.
Callback_SharedResources_newTable	Creates a new Format(""OMERO.tables"") file at the given path on the given repository.
Callback_SharedResources_openTable	Returns a Table instance or null.
Callback_SharedResources_removeProcessor	Unregisters a Processor from Storm notifications.
Callback_SharedResources_repositories	Returns a map between Repository descriptions (omero::model::OriginalFile instances) and RepositoryPrx instances (possibly null).
Callback_Table_addColumn	Adds a column and returns the position index of the new column.
Callback_Table_addData
Callback_Table_close
Callback_Table_delete
Callback_Table_getAllMetadata
Callback_Table_getHeaders	Returns empty columns.
Callback_Table_getMetadata
Callback_Table_getNumberOfRows
Callback_Table_getOriginalFile
Callback_Table_getWhereList	http://www.pytables.org/docs/manual/apb.html Leave all three of start, stop, step to 0 to disable.
Callback_Table_initialize	Initializes the structure based on
Callback_Table_read	http://www.pytables.org/docs/manual/ch04.html#Table.read
Callback_Table_readCoordinates	Read the given rows of data.
Callback_Table_setAllMetadata
Callback_Table_setMetadata
Callback_Table_slice	Simple slice method which will return only the given columns and rows in the order supplied.
Callback_Table_update	Allows the user to modify a Data instance passed back from a query method and have the values modified.
Callback_Tables_getRepository	Returns the Repository which this Tables service is watching.
Callback_Tables_getTable	Returns the Table service for the given ""OMERO.tables"" file.
ClusterNodeHolder
ClusterNodePrxHelper	Provides type-specific helper functions.
ClusterNodePrxHolder
Column	Base type for dealing working with tabular data.
ColumnArrayHelper
ColumnArrayHolder
ColumnHolder
ColumnPrxHelper	Provides type-specific helper functions.
ColumnPrxHolder
Data
DataHolder
DataPrxHelper	Provides type-specific helper functions.
DataPrxHolder
DatasetColumn
DatasetColumnHolder
DatasetColumnPrxHelper	Provides type-specific helper functions.
DatasetColumnPrxHolder
DoubleArrayColumn
DoubleArrayColumnHolder
DoubleArrayColumnPrxHelper	Provides type-specific helper functions.
DoubleArrayColumnPrxHolder
DoubleColumn
DoubleColumnHolder
DoubleColumnPrxHelper	Provides type-specific helper functions.
DoubleColumnPrxHolder
FileColumn
FileColumnHolder
FileColumnPrxHelper	Provides type-specific helper functions.
FileColumnPrxHolder
FloatArrayColumn
FloatArrayColumnHolder
FloatArrayColumnPrxHelper	Provides type-specific helper functions.
FloatArrayColumnPrxHolder
ImageColumn
ImageColumnHolder
ImageColumnPrxHelper	Provides type-specific helper functions.
ImageColumnPrxHolder
ImportLocation	Returned by ManagedRepository.importFileset with the information needed to proceed with an FS import.
ImportLocationHolder
ImportLocationPrxHelper	Provides type-specific helper functions.
ImportLocationPrxHolder
ImportProcessHolder
ImportProcessListHelper
ImportProcessListHolder
ImportProcessPrxHelper	Provides type-specific helper functions.
ImportProcessPrxHolder
ImportRequest	Command object which will be used to create the Handle instances passed back by the ImportProcess.
ImportRequestHolder
ImportRequestPrxHelper	Provides type-specific helper functions.
ImportRequestPrxHolder
ImportResponse	Successful response returned from execution of ImportRequest.
ImportResponseHolder
ImportResponsePrxHelper	Provides type-specific helper functions.
ImportResponsePrxHolder
ImportSettings	User configuration options.
ImportSettingsHolder
ImportSettingsPrxHelper	Provides type-specific helper functions.
ImportSettingsPrxHolder
InteractiveProcessorHolder
InteractiveProcessorI	Processor implementation which delegates to an omero.grid.Processor servant.
InteractiveProcessorListHelper
InteractiveProcessorListHolder
InteractiveProcessorPrxHelper	Provides type-specific helper functions.
InteractiveProcessorPrxHolder
InternalRepositoryHolder
InternalRepositoryPrxHelper	Provides type-specific helper functions.
InternalRepositoryPrxHolder
JobParams	Complete job description with all input and output Params.
JobParamsHolder
JobParamsPrxHelper	Provides type-specific helper functions.
JobParamsPrxHolder
LongArrayColumn
LongArrayColumnHolder
LongArrayColumnPrxHelper	Provides type-specific helper functions.
LongArrayColumnPrxHolder
LongColumn
LongColumnHolder
LongColumnPrxHelper	Provides type-specific helper functions.
LongColumnPrxHolder
ManagedRepositoryHolder
ManagedRepositoryPrxHelper	Provides type-specific helper functions.
ManagedRepositoryPrxHolder
MaskColumn	Column requiring special handling.
MaskColumnHolder
MaskColumnPrxHelper	Provides type-specific helper functions.
MaskColumnPrxHolder
Param	A single parameter to a Job.
ParamHolder
ParamMapHelper
ParamMapHolder
ParamPrxHelper	Provides type-specific helper functions.
ParamPrxHolder
ParamsHelper
PlateColumn
PlateColumnHolder
PlateColumnPrxHelper	Provides type-specific helper functions.
PlateColumnPrxHolder
ProcessCallbackHolder
ProcessCallbackI
ProcessCallbackPrxHelper	Provides type-specific helper functions.
ProcessCallbackPrxHolder
ProcessHolder
ProcessorCallbackHolder
ProcessorCallbackPrxHelper	Provides type-specific helper functions.
ProcessorCallbackPrxHolder
ProcessorHolder
ProcessorPrxHelper	Provides type-specific helper functions.
ProcessorPrxHolder
ProcessPrxHelper	Provides type-specific helper functions.
ProcessPrxHolder
RawAccessRequest	Deprecated Not intended for use by production clients.
RawAccessRequestHolder
RawAccessRequestPrxHelper	Deprecated Not intended for use by production clients.
RawAccessRequestPrxHolder
RepositoryHolder
RepositoryMap	Return value for _SharedResourcesOperations.repositories(Ice.Current) The descriptions and proxies arrays will have the same size and each index in descriptions (non-null) will match a possibly null proxy, if the given repository is not currently accessible.
RepositoryMapHolder
RepositoryProxyListHelper
RepositoryProxyListHolder
RepositoryPrxHelper	Provides type-specific helper functions.
RepositoryPrxHolder
RoiColumn
RoiColumnHolder
RoiColumnPrxHelper	Provides type-specific helper functions.
RoiColumnPrxHolder
ScriptProcessHolder
ScriptProcessPrxHelper	Provides type-specific helper functions.
ScriptProcessPrxHolder
SharedResourcesHolder
SharedResourcesPrxHelper	Provides type-specific helper functions.
SharedResourcesPrxHolder
StringColumn
StringColumnHolder
StringColumnPrxHelper	Provides type-specific helper functions.
StringColumnPrxHolder
TableHolder
TablePrxHelper	Provides type-specific helper functions.
TablePrxHolder
TablesHolder
TablesPrxHelper	Provides type-specific helper functions.
TablesPrxHolder
WellColumn
WellColumnHolder
WellColumnPrxHelper	Provides type-specific helper functions.
WellColumnPrxHolder

Enum Summary

Enum	Description
ProcessCallbackI.Action

Exception Summary

Exception	Description
FileDeleteException	Specifies that a file with the given path has failed to be deleted from the file system.
RepositoryException	Base repository exception.
UnregisteredFileException	Specifies that a file is located at the given location that is not otherwise known by the repository.