ome.services.blitz.impl

Class PixelsI

java.lang.Object

ome.services.blitz.impl.AbstractAmdServant

ome.services.blitz.impl.PixelsI

All Implemented Interfaces:

_IPixelsOperations, _ServiceInterfaceOperations, org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

public class PixelsI
extends AbstractAmdServant
implements _IPixelsOperations

Implementation of the IPixels service.

Since:

3.0-Beta4

See Also:

IPixels

Field Summary

Fields inherited from class ome.services.blitz.impl.AbstractAmdServant

be, ctx, holder, invoker, log, service

Constructor Summary

Constructors

Constructor and Description
PixelsI(ome.api.IPixels service, BlitzExecutor be)

Method Summary

Modifier and Type	Method and Description
void	copyAndResizeImage_async(AMD_IPixels_copyAndResizeImage __cb, long imageId, RInt sizeX, RInt sizeY, RInt sizeZ, RInt sizeT, java.util.List<java.lang.Integer> channelList, java.lang.String methodology, boolean copyStats, Ice.Current __current) Copies the metadata, and only the metadata linked to a Image object into a new Image object of equal or differing size across one or many of its three physical dimensions or temporal dimension.
void	copyAndResizePixels_async(AMD_IPixels_copyAndResizePixels __cb, long pixelsId, RInt sizeX, RInt sizeY, RInt sizeZ, RInt sizeT, java.util.List<java.lang.Integer> channelList, java.lang.String methodology, boolean copyStats, Ice.Current __current) Copies the metadata, and only the metadata linked to a Pixels object into a new Pixels object of equal or differing size across one or many of its three physical dimensions or temporal dimension.
void	createImage_async(AMD_IPixels_createImage __cb, int sizeX, int sizeY, int sizeZ, int sizeT, java.util.List<java.lang.Integer> channelList, PixelsType pixelsType, java.lang.String name, java.lang.String description, Ice.Current __current) Creates the metadata, and only the metadata linked to an Image object.
void	getAllEnumerations_async(AMD_IPixels_getAllEnumerations __cb, java.lang.String enumClass, Ice.Current __current) Retrieves the exhaustive list of enumerations for a given enumeration class.
void	getBitDepth_async(AMD_IPixels_getBitDepth __cb, PixelsType type, Ice.Current __current) Bit depth for a given pixel type.
void	getEnumeration_async(AMD_IPixels_getEnumeration __cb, java.lang.String enumClass, java.lang.String value, Ice.Current __current) Retrieves a particular enumeration for a given enumeration class.
void	loadRndSettings_async(AMD_IPixels_loadRndSettings __cb, long renderingSettingsId, Ice.Current __current) Loads a specific set of rendering settings.
void	retrieveAllRndSettings_async(AMD_IPixels_retrieveAllRndSettings __cb, long pixId, long userId, Ice.Current __current) Retrieves all the rendering settings for a given pixels set and the passed user.
void	retrievePixDescription_async(AMD_IPixels_retrievePixDescription __cb, long pixId, Ice.Current __current) Retrieves the pixels metadata.
void	retrieveRndSettings_async(AMD_IPixels_retrieveRndSettings __cb, long pixId, Ice.Current __current) Retrieves the rendering settings for a given pixels set and the currently logged in user.
void	retrieveRndSettingsFor_async(AMD_IPixels_retrieveRndSettingsFor __cb, long pixId, long userId, Ice.Current __current) Retrieves the rendering settings for a given pixels set and the passed user.
void	saveRndSettings_async(AMD_IPixels_saveRndSettings __cb, RenderingDef rndSettings, Ice.Current __current) Saves the specified rendering settings.
void	setChannelGlobalMinMax_async(AMD_IPixels_setChannelGlobalMinMax __cb, long pixelsId, int channelIndex, double min, double max, Ice.Current __current) Sets the channel global (all 2D optical sections corresponding to a particular channel) minimum and maximum for a Pixels set.

Methods inherited from class ome.services.blitz.impl.AbstractAmdServant

activate_async, applyHardWiredInterceptors, callInvokerOnMappedArgs, callInvokerOnRawArgs, executorWorkCall, getCurrentEventContext_async, onSetOmeroContext, passivate_async, runnableCall, safeRunnableCall, setApplicationContext, setHolder

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PixelsI

public PixelsI(ome.api.IPixels service,
               BlitzExecutor be)

Method Detail

copyAndResizeImage_async

public void copyAndResizeImage_async(AMD_IPixels_copyAndResizeImage __cb,
                                     long imageId,
                                     RInt sizeX,
                                     RInt sizeY,
                                     RInt sizeZ,
                                     RInt sizeT,
                                     java.util.List<java.lang.Integer> channelList,
                                     java.lang.String methodology,
                                     boolean copyStats,
                                     Ice.Current __current)
                              throws ServerError

Description copied from interface: _IPixelsOperations

Copies the metadata, and only the metadata linked to a Image object into a new Image object of equal or differing size across one or many of its three physical dimensions or temporal dimension. It is beyond the scope of this method to handle updates or changes to the raw pixel data available through RawPixelsStore or to add and link PlaneInfo and/or other Pixels set specific metadata. It is also assumed that the caller wishes the pixels dimensions and PixelsType to remain the same; changing these is outside the scope of this method. NOTE: As Channel objects are only able to apply to a single set of Pixels any annotations or linkage to these objects will be lost.

Specified by:

copyAndResizeImage_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

imageId - The source Image id.

sizeY - The new size across the Y-axis. null if the copy should maintain the same size.

sizeZ - The new size across the Z-axis. null if the copy should maintain the same size.

sizeT - The new number of timepoints. null if the copy should maintain the same number.

channelList - The channels that should be copied into the new Pixels set.

methodology - The name of the new Image.

__current - The Current object for the invocation.

Throws:

ServerError

copyAndResizePixels_async

public void copyAndResizePixels_async(AMD_IPixels_copyAndResizePixels __cb,
                                      long pixelsId,
                                      RInt sizeX,
                                      RInt sizeY,
                                      RInt sizeZ,
                                      RInt sizeT,
                                      java.util.List<java.lang.Integer> channelList,
                                      java.lang.String methodology,
                                      boolean copyStats,
                                      Ice.Current __current)
                               throws ServerError

Description copied from interface: _IPixelsOperations

Copies the metadata, and only the metadata linked to a Pixels object into a new Pixels object of equal or differing size across one or many of its three physical dimensions or temporal dimension. It is beyond the scope of this method to handle updates or changes to the raw pixel data available through RawPixelsStore or to add and link PlaneInfo and/or other Pixels set specific metadata. It is also assumed that the caller wishes the pixels dimensions and PixelsType to remain the same; changing these is outside the scope of this method. NOTE: As Channel objects are only able to apply to a single set of Pixels any annotations or linkage to these objects will be lost.

Specified by:

copyAndResizePixels_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

pixelsId - The source Pixels set id.

sizeY - The new size across the Y-axis. null if the copy should maintain the same size.

sizeZ - The new size across the Z-axis. null if the copy should maintain the same size.

sizeT - The new number of timepoints. null if the copy should maintain the same number.

channelList - The channels that should be copied into the new Pixels set.

methodology - An optional string signifying the methodology that will be used to produce this new Pixels set.

copyStats - Whether or not to copy the StatsInfo for each channel.

__current - The Current object for the invocation.

Throws:

ServerError

createImage_async

public void createImage_async(AMD_IPixels_createImage __cb,
                              int sizeX,
                              int sizeY,
                              int sizeZ,
                              int sizeT,
                              java.util.List<java.lang.Integer> channelList,
                              PixelsType pixelsType,
                              java.lang.String name,
                              java.lang.String description,
                              Ice.Current __current)
                       throws ServerError

Description copied from interface: _IPixelsOperations

Creates the metadata, and only the metadata linked to an Image object. It is beyond the scope of this method to handle updates or changes to the raw pixel data available through RawPixelsStore or to add and link PlaneInfo or StatsInfo objects and/or other Pixels set specific metadata. It is also up to the caller to update the pixels dimensions.

Specified by:

createImage_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

sizeX - The new size across the X-axis.

sizeZ - The new size across the Z-axis.

pixelsType - The pixelsType

description - The description of the new Image.

__current - The Current object for the invocation.

Throws:

ServerError

getAllEnumerations_async

public void getAllEnumerations_async(AMD_IPixels_getAllEnumerations __cb,
                                     java.lang.String enumClass,
                                     Ice.Current __current)
                              throws ServerError

Description copied from interface: _IPixelsOperations

Retrieves the exhaustive list of enumerations for a given enumeration class.

Specified by:

getAllEnumerations_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

enumClass - Enumeration class.

__current - The Current object for the invocation.

Throws:

ServerError

getBitDepth_async

public void getBitDepth_async(AMD_IPixels_getBitDepth __cb,
                              PixelsType type,
                              Ice.Current __current)
                       throws ServerError

Description copied from interface: _IPixelsOperations

Bit depth for a given pixel type.

Specified by:

getBitDepth_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

type - Pixels type.

__current - The Current object for the invocation.

Throws:

ServerError

getEnumeration_async

public void getEnumeration_async(AMD_IPixels_getEnumeration __cb,
                                 java.lang.String enumClass,
                                 java.lang.String value,
                                 Ice.Current __current)
                          throws ServerError

Description copied from interface: _IPixelsOperations

Retrieves a particular enumeration for a given enumeration class.

Specified by:

getEnumeration_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

enumClass - Enumeration class.

__current - The Current object for the invocation.

Throws:

ServerError

loadRndSettings_async

public void loadRndSettings_async(AMD_IPixels_loadRndSettings __cb,
                                  long renderingSettingsId,
                                  Ice.Current __current)
                           throws ServerError

Description copied from interface: _IPixelsOperations

Loads a specific set of rendering settings. The following objects are pre-linked:

• renderingDef.quantization
• renderingDef.model
• renderingDef.waveRendering
• renderingDef.waveRendering.color
• renderingDef.waveRendering.family
• renderingDef.spatialDomainEnhancement

Specified by:

loadRndSettings_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

renderingSettingsId - Rendering definition id.

__current - The Current object for the invocation.

Throws:

ServerError

retrievePixDescription_async

public void retrievePixDescription_async(AMD_IPixels_retrievePixDescription __cb,
                                         long pixId,
                                         Ice.Current __current)
                                  throws ServerError

Description copied from interface: _IPixelsOperations

Retrieves the pixels metadata. The following objects are pre-linked:

• pixels.pixelsType
• pixels.pixelsDimensions
• pixels.channels
• pixels.channnels.statsInfo
• pixels.channnels.colorComponent
• pixels.channnels.logicalChannel
• pixels.channnels.logicalChannel.photometricInterpretation

Specified by:

retrievePixDescription_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

pixId - Pixels id.

__current - The Current object for the invocation.

Throws:

ServerError

retrieveRndSettings_async

public void retrieveRndSettings_async(AMD_IPixels_retrieveRndSettings __cb,
                                      long pixId,
                                      Ice.Current __current)
                               throws ServerError

Description copied from interface: _IPixelsOperations

Retrieves the rendering settings for a given pixels set and the currently logged in user. If the current user has no RenderingDef, and the user is an administrator, then a RenderingDef may be returned for the owner of the Pixels. This matches the behavior of the Rendering service. The following objects will be pre-linked:

• renderingDef.quantization
• renderingDef.model
• renderingDef.waveRendering
• renderingDef.waveRendering.color
• renderingDef.waveRendering.family
• renderingDef.spatialDomainEnhancement

Specified by:

retrieveRndSettings_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

pixId - Pixels id.

__current - The Current object for the invocation.

Throws:

ServerError

retrieveRndSettingsFor_async

public void retrieveRndSettingsFor_async(AMD_IPixels_retrieveRndSettingsFor __cb,
                                         long pixId,
                                         long userId,
                                         Ice.Current __current)
                                  throws ServerError

Description copied from interface: _IPixelsOperations

Retrieves the rendering settings for a given pixels set and the passed user. The following objects are pre-linked:

• renderingDef.quantization
• renderingDef.model
• renderingDef.waveRendering
• renderingDef.waveRendering.color
• renderingDef.waveRendering.family
• renderingDef.spatialDomainEnhancement

Specified by:

retrieveRndSettingsFor_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

pixId - Pixels id.

__current - The Current object for the invocation.

Throws:

ServerError

retrieveAllRndSettings_async

public void retrieveAllRndSettings_async(AMD_IPixels_retrieveAllRndSettings __cb,
                                         long pixId,
                                         long userId,
                                         Ice.Current __current)
                                  throws ServerError

Description copied from interface: _IPixelsOperations

Retrieves all the rendering settings for a given pixels set and the passed user. The following objects are pre-linked:

• renderingDef.quantization
• renderingDef.model
• renderingDef.waveRendering
• renderingDef.waveRendering.color
• renderingDef.waveRendering.family
• renderingDef.spatialDomainEnhancement

Specified by:

retrieveAllRndSettings_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

pixId - Pixels id.

__current - The Current object for the invocation.

Throws:

ServerError

saveRndSettings_async

public void saveRndSettings_async(AMD_IPixels_saveRndSettings __cb,
                                  RenderingDef rndSettings,
                                  Ice.Current __current)
                           throws ServerError

Description copied from interface: _IPixelsOperations

Saves the specified rendering settings.

Specified by:

saveRndSettings_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

rndSettings - Rendering settings.

__current - The Current object for the invocation.

Throws:

ServerError

setChannelGlobalMinMax_async

public void setChannelGlobalMinMax_async(AMD_IPixels_setChannelGlobalMinMax __cb,
                                         long pixelsId,
                                         int channelIndex,
                                         double min,
                                         double max,
                                         Ice.Current __current)
                                  throws ServerError

Description copied from interface: _IPixelsOperations

Sets the channel global (all 2D optical sections corresponding to a particular channel) minimum and maximum for a Pixels set.

Specified by:

setChannelGlobalMinMax_async in interface _IPixelsOperations

Parameters:

__cb - The callback object for the operation.

pixelsId - The source Pixels set id.

min - The channel global minimum.

__current - The Current object for the invocation.

Throws:

ServerError