ome.services.blitz.impl

Class MetadataI

java.lang.Object

ome.services.blitz.impl.AbstractAmdServant

ome.services.blitz.impl.MetadataI

All Implemented Interfaces:

_IMetadataOperations, _ServiceInterfaceOperations, org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

public class MetadataI
extends AbstractAmdServant
implements _IMetadataOperations

Implementation of the IMetadata service.

Since:

3.0-Beta4

Field Summary

Fields inherited from class ome.services.blitz.impl.AbstractAmdServant

be, ctx, holder, invoker, log, service

Constructor Summary

Constructors

Constructor and Description
MetadataI(ome.api.IMetadata service, BlitzExecutor be) Creates a new instance.

Method Summary

Modifier and Type	Method and Description
void	countAnnotationsUsedNotOwned_async(AMD_IMetadata_countAnnotationsUsedNotOwned __cb, java.lang.String annotationType, long userID, Ice.Current __current) Counts the number of annotation of a given type used by the specified user but not owned by the user.
void	countSpecifiedAnnotations_async(AMD_IMetadata_countSpecifiedAnnotations __cb, java.lang.String annotationType, java.util.List<java.lang.String> include, java.util.List<java.lang.String> exclude, Parameters options, Ice.Current __current) Counts the number of annotation of a given type.
void	getTaggedObjectsCount_async(AMD_IMetadata_getTaggedObjectsCount __cb, java.util.List<java.lang.Long> ids, Parameters options, Ice.Current __current) Returns a map whose key is a tag id and the value the number of Projects, Datasets, and Images linked to that tag.
void	loadAnnotation_async(AMD_IMetadata_loadAnnotation __cb, java.util.List<java.lang.Long> ids, Ice.Current __current) Loads the specified annotations.
void	loadAnnotations_async(AMD_IMetadata_loadAnnotations __cb, java.lang.String rootType, java.util.List<java.lang.Long> rootIds, java.util.List<java.lang.String> annotationTypes, java.util.List<java.lang.Long> annotatorIds, Parameters options, Ice.Current __current) Loads all the annotations of given types, that have been attached to the specified rootNodes for the specified annotatorIds.
void	loadAnnotationsUsedNotOwned_async(AMD_IMetadata_loadAnnotationsUsedNotOwned __cb, java.lang.String annotationType, long userID, Ice.Current __current) Loads the annotations of a given type used by the specified user but not owned by the user.
void	loadChannelAcquisitionData_async(AMD_IMetadata_loadChannelAcquisitionData __cb, java.util.List<java.lang.Long> ids, Ice.Current __current) Loads the logical channels and the acquisition metadata related to them.
void	loadInstrument_async(AMD_IMetadata_loadInstrument __cb, long id, Ice.Current __current) Loads the instrument and its components i.e.
void	loadLogFiles_async(AMD_IMetadata_loadLogFiles __cb, java.lang.String rootType, java.util.List<java.lang.Long> ids, Ice.Current __current) Finds the original file IDs for the import logs corresponding to the given Image or Fileset IDs.
void	loadSpecifiedAnnotations_async(AMD_IMetadata_loadSpecifiedAnnotations __cb, java.lang.String annotationType, java.util.List<java.lang.String> include, java.util.List<java.lang.String> exclude, Parameters options, Ice.Current __current) Loads all the annotations of a given type.
void	loadSpecifiedAnnotationsLinkedTo_async(AMD_IMetadata_loadSpecifiedAnnotationsLinkedTo __cb, java.lang.String annotationType, java.util.List<java.lang.String> include, java.util.List<java.lang.String> exclude, java.lang.String rootNodeType, java.util.List<java.lang.Long> nodeIds, Parameters options, Ice.Current __current) Loads the annotations of a given type linked to the specified objects.
void	loadTagContent_async(AMD_IMetadata_loadTagContent __cb, java.util.List<java.lang.Long> ids, Parameters options, Ice.Current __current) Loads the TagSet if the id is specified otherwise loads all the TagSet.
void	loadTagSets_async(AMD_IMetadata_loadTagSets __cb, Parameters options, Ice.Current __current) Loads all the TagSets.
protected void	map(java.util.List<java.lang.String> annotationTypes)
protected java.lang.String	map(java.lang.String annotationType)

Methods inherited from class ome.services.blitz.impl.AbstractAmdServant

activate_async, applyHardWiredInterceptors, callInvokerOnMappedArgs, callInvokerOnRawArgs, executorWorkCall, getCurrentEventContext_async, onSetOmeroContext, passivate_async, runnableCall, safeRunnableCall, setApplicationContext, setHolder

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MetadataI

public MetadataI(ome.api.IMetadata service,
                 BlitzExecutor be)

Creates a new instance.

Parameters:

service - Reference to the service.

be - The executor.

Method Detail

loadChannelAcquisitionData_async

public void loadChannelAcquisitionData_async(AMD_IMetadata_loadChannelAcquisitionData __cb,
                                             java.util.List<java.lang.Long> ids,
                                             Ice.Current __current)
                                      throws ServerError

Description copied from interface: _IMetadataOperations

Loads the logical channels and the acquisition metadata related to them.

Specified by:

loadChannelAcquisitionData_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

ids - The collection of logical channel's ids. Mustn't be null.

__current - The Current object for the invocation.

Throws:

ServerError

loadAnnotations_async

public void loadAnnotations_async(AMD_IMetadata_loadAnnotations __cb,
                                  java.lang.String rootType,
                                  java.util.List<java.lang.Long> rootIds,
                                  java.util.List<java.lang.String> annotationTypes,
                                  java.util.List<java.lang.Long> annotatorIds,
                                  Parameters options,
                                  Ice.Current __current)
                           throws ServerError

Description copied from interface: _IMetadataOperations

Loads all the annotations of given types, that have been attached to the specified rootNodes for the specified annotatorIds. If no types specified, all annotations will be loaded. This method looks for the annotations that have been attached to each of the specified objects. It then maps each rootId onto the set of annotations that were found for that node. If no annotations were found for that node, then the entry will be null. Otherwise it will be a Map containing Annotation objects.

Specified by:

loadAnnotations_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

rootType - The type of the nodes the annotations are linked to. Mustn't be null.

rootIds - Ids of the objects of type rootType. Mustn't be null.

annotationTypes - The types of annotation to retrieve. If null all annotations will be loaded. String of the type omero.model.annotations.*.

annotatorIds - Ids of the users for whom annotations should be retrieved. If null, all annotations returned.

__current - The Current object for the invocation.

Throws:

ServerError

loadSpecifiedAnnotations_async

public void loadSpecifiedAnnotations_async(AMD_IMetadata_loadSpecifiedAnnotations __cb,
                                           java.lang.String annotationType,
                                           java.util.List<java.lang.String> include,
                                           java.util.List<java.lang.String> exclude,
                                           Parameters options,
                                           Ice.Current __current)
                                    throws ServerError

Description copied from interface: _IMetadataOperations

Loads all the annotations of a given type. It is possible to filter the annotations by including or excluding name spaces set on the annotations.

Specified by:

loadSpecifiedAnnotations_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

annotationType - The type of annotations to load.

exclude - Exclude the annotations with the specified name spaces.

options - The POJO options.

__current - The Current object for the invocation.

Throws:

ServerError

countSpecifiedAnnotations_async

public void countSpecifiedAnnotations_async(AMD_IMetadata_countSpecifiedAnnotations __cb,
                                            java.lang.String annotationType,
                                            java.util.List<java.lang.String> include,
                                            java.util.List<java.lang.String> exclude,
                                            Parameters options,
                                            Ice.Current __current)
                                     throws ServerError

Description copied from interface: _IMetadataOperations

Counts the number of annotation of a given type.

Specified by:

countSpecifiedAnnotations_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

annotationType - The type of annotations to load.

exclude - The collection of name space, one of the constants defined by this class.

options - The POJO options.

__current - The Current object for the invocation.

Throws:

ServerError

loadTagSets_async

public void loadTagSets_async(AMD_IMetadata_loadTagSets __cb,
                              Parameters options,
                              Ice.Current __current)
                       throws ServerError

Description copied from interface: _IMetadataOperations

Loads all the TagSets. Returns a collection of AnnotationAnnotatioLink objects and, if the orphan parameters is true, the TagAnnotation object. Note that the difference between a TagSet and a Tag is made using the NS_INSIGHT_TAG_SET namespace.

Specified by:

loadTagSets_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

options - The POJO options.

__current - The Current object for the invocation.

Throws:

ServerError

loadTagContent_async

public void loadTagContent_async(AMD_IMetadata_loadTagContent __cb,
                                 java.util.List<java.lang.Long> ids,
                                 Parameters options,
                                 Ice.Current __current)
                          throws ServerError

Description copied from interface: _IMetadataOperations

Loads the TagSet if the id is specified otherwise loads all the TagSet.

Specified by:

loadTagContent_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

ids - The id of the tag to load or -1.

__current - The Current object for the invocation.

Throws:

ServerError

getTaggedObjectsCount_async

public void getTaggedObjectsCount_async(AMD_IMetadata_getTaggedObjectsCount __cb,
                                        java.util.List<java.lang.Long> ids,
                                        Parameters options,
                                        Ice.Current __current)
                                 throws ServerError

Description copied from interface: _IMetadataOperations

Returns a map whose key is a tag id and the value the number of Projects, Datasets, and Images linked to that tag.

Specified by:

getTaggedObjectsCount_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

ids - The collection of ids.

__current - The Current object for the invocation.

Throws:

ServerError

loadAnnotation_async

public void loadAnnotation_async(AMD_IMetadata_loadAnnotation __cb,
                                 java.util.List<java.lang.Long> ids,
                                 Ice.Current __current)
                          throws ServerError

Description copied from interface: _IMetadataOperations

Loads the specified annotations.

Specified by:

loadAnnotation_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

ids - The collection of annotation ids.

__current - The Current object for the invocation.

Throws:

ServerError

loadInstrument_async

public void loadInstrument_async(AMD_IMetadata_loadInstrument __cb,
                                 long id,
                                 Ice.Current __current)
                          throws ServerError

Description copied from interface: _IMetadataOperations

Loads the instrument and its components i.e. detectors, objectives, etc.

Specified by:

loadInstrument_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

id - The id of the instrument to load.

__current - The Current object for the invocation.

Throws:

ServerError

countAnnotationsUsedNotOwned_async

public void countAnnotationsUsedNotOwned_async(AMD_IMetadata_countAnnotationsUsedNotOwned __cb,
                                               java.lang.String annotationType,
                                               long userID,
                                               Ice.Current __current)
                                        throws ServerError

Description copied from interface: _IMetadataOperations

Counts the number of annotation of a given type used by the specified user but not owned by the user.

Specified by:

countAnnotationsUsedNotOwned_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

annotationType - The type of annotations to load.

__current - The Current object for the invocation.

Throws:

ServerError

loadAnnotationsUsedNotOwned_async

public void loadAnnotationsUsedNotOwned_async(AMD_IMetadata_loadAnnotationsUsedNotOwned __cb,
                                              java.lang.String annotationType,
                                              long userID,
                                              Ice.Current __current)
                                       throws ServerError

Description copied from interface: _IMetadataOperations

Loads the annotations of a given type used by the specified user but not owned by the user.

Specified by:

loadAnnotationsUsedNotOwned_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

annotationType - The type of annotations to load.

__current - The Current object for the invocation.

Throws:

ServerError

loadSpecifiedAnnotationsLinkedTo_async

public void loadSpecifiedAnnotationsLinkedTo_async(AMD_IMetadata_loadSpecifiedAnnotationsLinkedTo __cb,
                                                   java.lang.String annotationType,
                                                   java.util.List<java.lang.String> include,
                                                   java.util.List<java.lang.String> exclude,
                                                   java.lang.String rootNodeType,
                                                   java.util.List<java.lang.Long> nodeIds,
                                                   Parameters options,
                                                   Ice.Current __current)
                                            throws ServerError

Description copied from interface: _IMetadataOperations

Loads the annotations of a given type linked to the specified objects. It is possible to filter the annotations by including or excluding name spaces set on the annotations. This method looks for the annotations that have been attached to each of the specified objects. It then maps each rootNodeId onto the set of annotations that were found for that node. If no annotations were found for that node, the map will not contain an entry for that node. Otherwise it will be a Set containing Annotation objects. The rootNodeType supported are: Project, Dataset, Image, Pixels, Screen, Plate, PlateAcquisition, Well, Fileset.

Specified by:

loadSpecifiedAnnotationsLinkedTo_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

annotationType - The type of annotations to load.

exclude - Exclude the annotations with the specified name spaces.

rootNodeType - The type of objects the annotations are linked to.

nodeIds - The identifiers of the objects.

__current - The Current object for the invocation.

Throws:

ServerError

loadLogFiles_async

public void loadLogFiles_async(AMD_IMetadata_loadLogFiles __cb,
                               java.lang.String rootType,
                               java.util.List<java.lang.Long> ids,
                               Ice.Current __current)
                        throws ServerError

Description copied from interface: _IMetadataOperations

Finds the original file IDs for the import logs corresponding to the given Image or Fileset IDs.

Specified by:

loadLogFiles_async in interface _IMetadataOperations

Parameters:

__cb - The callback object for the operation.

rootType - the root node type, may be Image or Fileset

ids - the IDs of the entities for which the import log original file IDs are required

__current - The Current object for the invocation.

Throws:

ServerError

map

protected void map(java.util.List<java.lang.String> annotationTypes)
            throws ServerError

Throws:

ServerError

map

protected java.lang.String map(java.lang.String annotationType)
                        throws ServerError

Throws:

ServerError