ome-xml
5.6.0
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#include <ome/xml/model/Screen.h>
Classes | |
class | Impl |
Private implementation details of Screen model object. More... | |
Public Member Functions | |
Screen () | |
Default constructor. | |
Screen (const Screen ©) | |
Copy constructor. More... | |
virtual | ~Screen () |
Destructor. | |
const std::string & | elementName () const |
Get the element name of this model object. More... | |
bool | validElementName (const std::string &name) const |
Check if a given element name is valid for processing by this model object. More... | |
virtual SKIP void | update (const common::xml::dom::Element &element, ome::xml::model::OMEModel &model) |
Update the object hierarchy recursively from an XML DOM tree. More... | |
bool | link (std::shared_ptr< Reference > &reference, std::shared_ptr< ome::xml::model::OMEModelObject > &object) |
Link a given OME model object to this model object. More... | |
std::shared_ptr< std::string > | getName () |
Get the Name property. More... | |
const std::shared_ptr< std::string > | getName () const |
Get the Name property. More... | |
void | setName (std::shared_ptr< std::string > &name) |
Set the Name property. More... | |
std::shared_ptr< std::string > | getProtocolDescription () |
Get the ProtocolDescription property. More... | |
const std::shared_ptr< std::string > | getProtocolDescription () const |
Get the ProtocolDescription property. More... | |
void | setProtocolDescription (std::shared_ptr< std::string > &protocolDescription) |
Set the ProtocolDescription property. More... | |
std::shared_ptr< std::string > | getProtocolIdentifier () |
Get the ProtocolIdentifier property. More... | |
const std::shared_ptr< std::string > | getProtocolIdentifier () const |
Get the ProtocolIdentifier property. More... | |
void | setProtocolIdentifier (std::shared_ptr< std::string > &protocolIdentifier) |
Set the ProtocolIdentifier property. More... | |
std::shared_ptr< std::string > | getReagentSetDescription () |
Get the ReagentSetDescription property. More... | |
const std::shared_ptr< std::string > | getReagentSetDescription () const |
Get the ReagentSetDescription property. More... | |
void | setReagentSetDescription (std::shared_ptr< std::string > &reagentSetDescription) |
Set the ReagentSetDescription property. More... | |
std::shared_ptr< std::string > | getType () |
Get the Type property. More... | |
const std::shared_ptr< std::string > | getType () const |
Get the Type property. More... | |
void | setType (std::shared_ptr< std::string > &type) |
Set the Type property. More... | |
const std::string & | getID () const |
Get the ID property. More... | |
void | setID (const std::string &id) |
Set the ID property. More... | |
std::shared_ptr< std::string > | getReagentSetIdentifier () |
Get the ReagentSetIdentifier property. More... | |
const std::shared_ptr< std::string > | getReagentSetIdentifier () const |
Get the ReagentSetIdentifier property. More... | |
void | setReagentSetIdentifier (std::shared_ptr< std::string > &reagentSetIdentifier) |
Set the ReagentSetIdentifier property. More... | |
std::shared_ptr< std::string > | getDescription () |
Get the Description property. More... | |
const std::shared_ptr< std::string > | getDescription () const |
Get the Description property. More... | |
void | setDescription (std::shared_ptr< std::string > &description) |
Set the Description property. More... | |
std::vector< std::shared_ptr< ome::xml::model::Reagent > >::size_type | sizeOfReagentList () const |
Get size of linked Reagent list. More... | |
std::vector< std::shared_ptr< ome::xml::model::Reagent > > & | getReagentList () |
Get the Reagent list. More... | |
const std::vector< std::shared_ptr< ome::xml::model::Reagent > > & | getReagentList () const |
Get the Reagent list. More... | |
std::shared_ptr< ome::xml::model::Reagent > & | getReagent (std::vector< std::shared_ptr< ome::xml::model::Reagent >>::size_type index) |
Get Reagent. More... | |
const std::shared_ptr< ome::xml::model::Reagent > & | getReagent (std::vector< std::shared_ptr< ome::xml::model::Reagent >>::size_type index) const |
Get Reagent. More... | |
void | setReagent (std::vector< std::shared_ptr< ome::xml::model::Reagent >>::size_type index, std::shared_ptr< ome::xml::model::Reagent > &reagent) |
Set Reagent. More... | |
void | addReagent (std::shared_ptr< ome::xml::model::Reagent > &reagent) |
Add Reagent. More... | |
void | removeReagent (std::shared_ptr< ome::xml::model::Reagent > &reagent) |
Remove Reagent. More... | |
OMEModelObject::indexed_container< ome::xml::model::Plate, std::weak_ptr >::type::size_type | sizeOfLinkedPlateList () const |
Get size of linked Plate list. More... | |
OMEModelObject::indexed_container< ome::xml::model::Plate, std::weak_ptr >::type | getLinkedPlateList () const |
Get the linked Plate list. More... | |
const std::weak_ptr< ome::xml::model::Plate > & | getLinkedPlate (OMEModelObject::indexed_container< ome::xml::model::Plate, std::weak_ptr >::type::size_type index) const |
Get linked Plate. More... | |
const std::weak_ptr< ome::xml::model::Plate > & | setLinkedPlate (OMEModelObject::indexed_container< ome::xml::model::Plate, std::weak_ptr >::type::size_type index, const std::shared_ptr< ome::xml::model::Plate > &plate) |
Set linked Plate. More... | |
bool | linkPlate (const std::shared_ptr< ome::xml::model::Plate > &plate) |
Link Plate. More... | |
bool | unlinkPlate (const std::shared_ptr< ome::xml::model::Plate > &plate) |
Unlink Plate. More... | |
OMEModelObject::indexed_container< ome::xml::model::Annotation, std::weak_ptr >::type::size_type | sizeOfLinkedAnnotationList () const |
Get size of linked Annotation list. More... | |
OMEModelObject::indexed_container< ome::xml::model::Annotation, std::weak_ptr >::type | getLinkedAnnotationList () const |
Get the linked Annotation list. More... | |
const std::weak_ptr< ome::xml::model::Annotation > & | getLinkedAnnotation (OMEModelObject::indexed_container< ome::xml::model::Annotation, std::weak_ptr >::type::size_type index) const |
Get linked Annotation. More... | |
const std::weak_ptr< ome::xml::model::Annotation > & | setLinkedAnnotation (OMEModelObject::indexed_container< ome::xml::model::Annotation, std::weak_ptr >::type::size_type index, const std::shared_ptr< ome::xml::model::Annotation > &annotation) |
Set linked Annotation. More... | |
bool | linkAnnotation (const std::shared_ptr< ome::xml::model::Annotation > &annotation) |
Link Annotation. More... | |
bool | unlinkAnnotation (const std::shared_ptr< ome::xml::model::Annotation > &annotation) |
Unlink Annotation. More... | |
const std::string & | getXMLNamespace () const |
Get the XML namespace for this model object. More... | |
Public Member Functions inherited from ome::xml::model::detail::OMEModelObject | |
virtual | ~OMEModelObject () |
Destructor. | |
virtual common::xml::dom::Element | asXMLElement (common::xml::dom::Document &document) const |
Transform the object hierarchy rooted at this element to XML. More... | |
virtual void | asXMLElement (common::xml::dom::Document &document, common::xml::dom::Element &element) const |
Transform the object hierarchy rooted at this element to XML. More... | |
virtual void | update (const common::xml::dom::Element &element, ::ome::xml::model::OMEModel &model) |
Update the object hierarchy recursively from an XML DOM tree. More... | |
virtual bool | link (std::shared_ptr< Reference > &reference, std::shared_ptr<::ome::xml::model::OMEModelObject > &object) |
Link a given OME model object to this model object. More... | |
Public Member Functions inherited from ome::xml::model::OMEModelObject | |
virtual bool | link (std::shared_ptr< Reference > &reference, std::shared_ptr< OMEModelObject > &object)=0 |
Link a given OME model object to this model object. More... | |
Static Public Member Functions | |
static std::shared_ptr< Screen > | create (const common::xml::dom::Element &element, ome::xml::model::OMEModel &model) |
Create a Screen model object from DOM element. More... | |
Static Public Member Functions inherited from ome::xml::model::detail::OMEModelObject | |
static std::vector< common::xml::dom::Element > | getChildrenByTagName (const common::xml::dom::Element &parent, const std::string &name) |
Retrieve all the children of an element that have a given tag name. More... | |
static std::string | stripNamespacePrefix (const std::string &value) |
Strip the namespace prefix from a tag name. More... | |
Protected Member Functions | |
virtual void | asXMLElementInternal (common::xml::dom::Document &document, common::xml::dom::Element &element) const |
Transform the object hierarchy rooted at this element to XML. More... | |
Protected Member Functions inherited from ome::xml::model::detail::OMEModelObject | |
OMEModelObject (const std::string &objectType="OMEModelObject") | |
Constructor. More... | |
OMEModelObject (const OMEModelObject ©) | |
Copy constructor. More... | |
template<class C , typename T > | |
bool | contains (const C &container, const std::shared_ptr< T > &element) |
Check if a container contains a particular element. More... | |
Protected Member Functions inherited from ome::xml::model::OMEModelObject | |
OMEModelObject () | |
Constructor. | |
Private Attributes | |
std::shared_ptr< Impl > | impl |
Private implementation details. | |
Additional Inherited Members | |
Protected Attributes inherited from ome::xml::model::detail::OMEModelObject | |
ome::common::Logger | logger |
Message logger. | |
Screen model object.
ome::xml::model::Screen::Screen | ( | const Screen & | copy | ) |
Copy constructor.
copy | the Screen to copy. |
void ome::xml::model::Screen::addReagent | ( | std::shared_ptr< ome::xml::model::Reagent > & | reagent | ) |
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protectedvirtual |
Transform the object hierarchy rooted at this element to XML.
This internal implementation of asXMLelement also requires an XML element, which must not be null, or may be instantiated and passed from superclasses.
Concrete model object implementations should override this method.
document | XML document for element creation. |
element | XML element for setting model data. |
Implements ome::xml::model::detail::OMEModelObject.
References ome::common::xml::dom::Node::appendChild(), ome::xml::model::detail::OMEModelObject::asXMLElementInternal(), ome::common::xml::dom::Document::createElementNS(), getXMLNamespace(), impl, and ome::common::xml::dom::Element::setAttribute().
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static |
Create a Screen model object from DOM element.
element | root of the XML DOM tree to from which to construct the model object graph. |
model | handler for the OME model used to track instances and references seen during the update. |
EnumerationException | if there is an error instantiating an enumeration during model object creation, or ModelException if there are any consistency or validity errors found during processing. |
Referenced by ome::xml::model::OME::update().
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virtual |
Get the element name of this model object.
This will be the most-derived class name.
Implements ome::xml::model::OMEModelObject.
std::shared_ptr< std::string > ome::xml::model::Screen::getDescription | ( | ) |
const std::shared_ptr< std::string > ome::xml::model::Screen::getDescription | ( | ) | const |
const std::string & ome::xml::model::Screen::getID | ( | ) | const |
const std::weak_ptr< ome::xml::model::Annotation > & ome::xml::model::Screen::getLinkedAnnotation | ( | OMEModelObject::indexed_container< ome::xml::model::Annotation, std::weak_ptr >::type::size_type | index | ) | const |
Get linked Annotation.
index | the index number of the Annotation. |
std::out_of_range | if the index is invalid. |
References impl.
OMEModelObject::indexed_container< ome::xml::model::Annotation, std::weak_ptr >::type ome::xml::model::Screen::getLinkedAnnotationList | ( | ) | const |
const std::weak_ptr< ome::xml::model::Plate > & ome::xml::model::Screen::getLinkedPlate | ( | OMEModelObject::indexed_container< ome::xml::model::Plate, std::weak_ptr >::type::size_type | index | ) | const |
OMEModelObject::indexed_container< ome::xml::model::Plate, std::weak_ptr >::type ome::xml::model::Screen::getLinkedPlateList | ( | ) | const |
std::shared_ptr< std::string > ome::xml::model::Screen::getName | ( | ) |
const std::shared_ptr< std::string > ome::xml::model::Screen::getName | ( | ) | const |
std::shared_ptr< std::string > ome::xml::model::Screen::getProtocolDescription | ( | ) |
const std::shared_ptr< std::string > ome::xml::model::Screen::getProtocolDescription | ( | ) | const |
std::shared_ptr< std::string > ome::xml::model::Screen::getProtocolIdentifier | ( | ) |
const std::shared_ptr< std::string > ome::xml::model::Screen::getProtocolIdentifier | ( | ) | const |
std::shared_ptr< ome::xml::model::Reagent > & ome::xml::model::Screen::getReagent | ( | std::vector< std::shared_ptr< ome::xml::model::Reagent >>::size_type | index | ) |
const std::shared_ptr< ome::xml::model::Reagent > & ome::xml::model::Screen::getReagent | ( | std::vector< std::shared_ptr< ome::xml::model::Reagent >>::size_type | index | ) | const |
std::vector< std::shared_ptr< ome::xml::model::Reagent > > & ome::xml::model::Screen::getReagentList | ( | ) |
const std::vector< std::shared_ptr< ome::xml::model::Reagent > > & ome::xml::model::Screen::getReagentList | ( | ) | const |
std::shared_ptr< std::string > ome::xml::model::Screen::getReagentSetDescription | ( | ) |
const std::shared_ptr< std::string > ome::xml::model::Screen::getReagentSetDescription | ( | ) | const |
std::shared_ptr< std::string > ome::xml::model::Screen::getReagentSetIdentifier | ( | ) |
const std::shared_ptr< std::string > ome::xml::model::Screen::getReagentSetIdentifier | ( | ) | const |
std::shared_ptr< std::string > ome::xml::model::Screen::getType | ( | ) |
const std::shared_ptr< std::string > ome::xml::model::Screen::getType | ( | ) | const |
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virtual |
Get the XML namespace for this model object.
Implements ome::xml::model::OMEModelObject.
Referenced by asXMLElementInternal().
bool ome::xml::model::Screen::link | ( | std::shared_ptr< Reference > & | reference, |
std::shared_ptr< ome::xml::model::OMEModelObject > & | object | ||
) |
Link a given OME model object to this model object.
reference | type qualifier for the reference. This should be the corresponding reference type for object. If, for example, object is of type Image, reference must be of type ImageRef. |
object | Model object to link to. |
true
if this model object was able to handle the reference, otherwise false
.References impl, ome::xml::model::detail::OMEModelObject::link(), ome::xml::model::Plate::linkScreen(), ome::xml::model::Annotation::linkScreen(), and ome::xml::model::detail::OMEModelObject::logger.
bool ome::xml::model::Screen::linkAnnotation | ( | const std::shared_ptr< ome::xml::model::Annotation > & | annotation | ) |
Link Annotation.
annotation | the Annotation to link. |
true
if the object was added to the internal annotationLinks list, otherwise false
.References impl.
bool ome::xml::model::Screen::linkPlate | ( | const std::shared_ptr< ome::xml::model::Plate > & | plate | ) |
void ome::xml::model::Screen::removeReagent | ( | std::shared_ptr< ome::xml::model::Reagent > & | reagent | ) |
void ome::xml::model::Screen::setDescription | ( | std::shared_ptr< std::string > & | description | ) |
void ome::xml::model::Screen::setID | ( | const std::string & | id | ) |
const std::weak_ptr< ome::xml::model::Annotation > & ome::xml::model::Screen::setLinkedAnnotation | ( | OMEModelObject::indexed_container< ome::xml::model::Annotation, std::weak_ptr >::type::size_type | index, |
const std::shared_ptr< ome::xml::model::Annotation > & | annotation | ||
) |
Set linked Annotation.
index | the index number of the Annotation. |
annotation | the Annotation to set. |
std::out_of_range | if the index is invalid. |
References impl.
const std::weak_ptr< ome::xml::model::Plate > & ome::xml::model::Screen::setLinkedPlate | ( | OMEModelObject::indexed_container< ome::xml::model::Plate, std::weak_ptr >::type::size_type | index, |
const std::shared_ptr< ome::xml::model::Plate > & | plate | ||
) |
void ome::xml::model::Screen::setName | ( | std::shared_ptr< std::string > & | name | ) |
void ome::xml::model::Screen::setProtocolDescription | ( | std::shared_ptr< std::string > & | protocolDescription | ) |
void ome::xml::model::Screen::setProtocolIdentifier | ( | std::shared_ptr< std::string > & | protocolIdentifier | ) |
void ome::xml::model::Screen::setReagent | ( | std::vector< std::shared_ptr< ome::xml::model::Reagent >>::size_type | index, |
std::shared_ptr< ome::xml::model::Reagent > & | reagent | ||
) |
void ome::xml::model::Screen::setReagentSetDescription | ( | std::shared_ptr< std::string > & | reagentSetDescription | ) |
void ome::xml::model::Screen::setReagentSetIdentifier | ( | std::shared_ptr< std::string > & | reagentSetIdentifier | ) |
void ome::xml::model::Screen::setType | ( | std::shared_ptr< std::string > & | type | ) |
OMEModelObject::indexed_container< ome::xml::model::Annotation, std::weak_ptr >::type::size_type ome::xml::model::Screen::sizeOfLinkedAnnotationList | ( | ) | const |
OMEModelObject::indexed_container< ome::xml::model::Plate, std::weak_ptr >::type::size_type ome::xml::model::Screen::sizeOfLinkedPlateList | ( | ) | const |
std::vector< std::shared_ptr< ome::xml::model::Reagent > >::size_type ome::xml::model::Screen::sizeOfReagentList | ( | ) | const |
bool ome::xml::model::Screen::unlinkAnnotation | ( | const std::shared_ptr< ome::xml::model::Annotation > & | annotation | ) |
Unlink Annotation.
annotation | the Annotation to unlink. |
true
if the Annotation was unlinked, otherwise false
if the Annotation was not linked and could hence not be unlinked.Does the return value serve any useful purpose? Is this also inherited Java API?
Doesn't the removal break the indexing?
Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.
References impl.
bool ome::xml::model::Screen::unlinkPlate | ( | const std::shared_ptr< ome::xml::model::Plate > & | plate | ) |
Unlink Plate.
plate | the Plate to unlink. |
true
if the Plate was unlinked, otherwise false
if the Plate was not linked and could hence not be unlinked.Does the return value serve any useful purpose? Is this also inherited Java API?
Doesn't the removal break the indexing?
Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.
References impl.
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virtual |
Update the object hierarchy recursively from an XML DOM tree.
element | root of the XML DOM tree to from which to construct the model object graph. |
model | handler for the OME model used to track instances and references seen during the update. |
EnumerationException | if there is an error instantiating an enumeration during model object creation, or ModelException if there are any consistency or validity errors found during processing. |
Implements ome::xml::model::OMEModelObject.
References ome::xml::model::OMEModel::addModelObject(), addReagent(), ome::xml::model::OMEModel::addReference(), ome::xml::model::Reagent::create(), ome::common::xml::dom::Element::getAttribute(), ome::xml::model::detail::OMEModelObject::getChildrenByTagName(), getID(), ome::common::xml::dom::Element::getTagName(), ome::common::xml::dom::Element::hasAttribute(), ome::xml::model::detail::OMEModelObject::logger, setDescription(), setID(), setName(), setProtocolDescription(), setProtocolIdentifier(), setReagentSetDescription(), setReagentSetIdentifier(), setType(), ome::xml::model::detail::OMEModelObject::update(), and validElementName().
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virtual |
Check if a given element name is valid for processing by this model object.
Used for processing nodes when interitance is involved.
name | the element name to check. |
true
if valid, false
if invalid. Implements ome::xml::model::detail::OMEModelObject.
Referenced by update().