GatanReader¶
This page lists supported metadata fields for the Bio-Formats Gatan Digital Micrograph format reader.
These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.
- Of the 476 fields documented in the metadata summary table:
- The file format itself supports 69 of them (14%).
- Of those, Bio-Formats fully or partially converts 69 (100%).
Supported fields¶
- These fields are fully supported by the Bio-Formats Gatan Digital Micrograph format reader:
- Channel : AcquisitionMode
- Channel : ID
- Channel : SamplesPerPixel
- Detector : ID
- DetectorSettings : ID
- DetectorSettings : Voltage
- Ellipse : FontSize
- Ellipse : ID
- Ellipse : RadiusX
- Ellipse : RadiusY
- Ellipse : StrokeColor
- Ellipse : Text
- Ellipse : X
- Ellipse : Y
- Image : AcquisitionDate
- Image : ID
- Image : InstrumentRef
- Image : Name
- Image : ROIRef
- Instrument : ID
- Label : FontSize
- Label : ID
- Label : StrokeColor
- Label : Text
- Label : X
- Label : Y
- Line : FontSize
- Line : ID
- Line : StrokeColor
- Line : Text
- Line : X1
- Line : X2
- Line : Y1
- Line : Y2
- Objective : Correction
- Objective : ID
- Objective : Immersion
- Objective : NominalMagnification
- ObjectiveSettings : ID
- Pixels : BigEndian
- Pixels : DimensionOrder
- Pixels : ID
- Pixels : Interleaved
- Pixels : PhysicalSizeX
- Pixels : PhysicalSizeY
- Pixels : PhysicalSizeZ
- Pixels : SignificantBits
- Pixels : SizeC
- Pixels : SizeT
- Pixels : SizeX
- Pixels : SizeY
- Pixels : SizeZ
- Pixels : Type
- Plane : ExposureTime
- Plane : PositionX
- Plane : PositionY
- Plane : PositionZ
- Plane : TheC
- Plane : TheT
- Plane : TheZ
- ROI : ID
- Rectangle : FontSize
- Rectangle : Height
- Rectangle : ID
- Rectangle : StrokeColor
- Rectangle : Text
- Rectangle : Width
- Rectangle : X
- Rectangle : Y
Total supported: 69
Total unknown or missing: 407
