##################################
System Administrator Documentation
##################################

This documentation begins with information aimed at OS-level administrators
and moves on to day-to-day management of OMERO for facility managers (who may
find it useful to read the
:help:`Facility Managers help guide <facility-manager.html>` for an overview
first).

*****************
Server Background
*****************

.. toctree::
    :maxdepth: 2
    :titlesonly:

    whatsnew
    server-overview
    system-requirements
    version-requirements
    server-setup-examples
    limitations
    
************
Installation
************

This section provides guidance on how to install and set up OMERO.server
and OMERO.web on any of the supported UNIX and UNIX-like platforms.
Following the installation links below you will find specific walkthroughs
provided for several systems, with detailed step-by-step instructions.
Reading through the :doc:`unix/server-installation` and
:doc:`unix/install-web/web-deployment` pages first
is recommended as this explains the entire process rather than just being a
series of commands.

.. toctree::
    :maxdepth: 1
    :titlesonly:

    unix/server-installation
    unix/install-web/web-deployment
    unix/server-binary-repository
    unix/server-postgresql
    advanced-install

*************************
Maintenance and Upgrading
*************************

This section contains instructions for administering, troubleshooting,
backing-up, and upgrading your installation.

.. toctree::
    :maxdepth: 1
    :titlesonly:

    troubleshooting
    cli/index
    server-backup-and-restore
    server-upgrade
    omeroweb-upgrade
    unix/install-web
    UpgradeCheck
    repository-move

.. _index-optimizing-server:

*******************************
Optimizing Server Configuration
*******************************

This section discusses the options for configuring OMERO.server for optimum
performance and security.

.. toctree::
    :maxdepth: 2
    :titlesonly:

    server-security
    server-ldap
    server-performance
    search
    fs-upload-configuration
    server-advanced-configuration
    config
    server-syslog

**************
Managing OMERO
**************

This section contains details on how to manage users, groups and data access
in OMERO. New in OMERO 5.4.0, full administrators can now create restricted
administrators to allow facility managers or other trusted users to carry out
tasks on behalf of all users.

.. toctree::
    :maxdepth: 2
    :titlesonly:

    server-permissions
    restricted-admins

.. seealso::

    - Command Line Interface guides for :doc:`cli/usergroup` and
      :doc:`/users/cli/chown`
    - :help:`Facility Managers help guide <facility-manager.html>`

***********************
Data Import and Storage
***********************

This section contains details of how OMERO.fs allows you to import and store
data with OMERO 5.

.. toctree::
    :maxdepth: 2
    :titlesonly:

    dropbox
    in-place-import
    import-scenarios

.. _index-public-data:

*************************************
Optimizing OMERO as a Data Repository
*************************************

This section explains how to customize the appearance and functionality of
OMERO clients to host images for groups or public viewing.

.. toctree::
    :maxdepth: 2

    public

.. toctree::
    :maxdepth: 2
    :titlesonly:

    customization