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Every OMERO model object

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Note

This documentation is for the new OMERO 5.1. version. See the latest OMERO 5.0.x version or the previous versions page to find documentation for the OMERO version you are using if you have not upgraded yet.

Units

A number of properties in the OME model are physical measurements which inherently have a unit associated with them. Earlier versions of OME defined a default unit for the measurement. Now users, clients, and acquisition systems can specify the unit themselves rather than converting their internal unit to the OME default.

Supported units

  • Electric potential
  • Frequency
  • Length
  • Power
  • Pressure
  • Temperature
  • Time

Each of the supported units contain a number of values from the International System of Units (SI) in the most common prefixes from yotta (10^24) to yocto (10^-24). The Length unit also contains values from the Imperial system as well as internal values which are internal to OME: reference frame and pixel.

Unit objects

Each unit quantity consists of a double-precision scalar and an enumeration which chooses one of the pre-defined values from the model. In code, uppercase spellings of the enumerations are used, while in the schema, in OME-XML files, and in the database, the unicode symbol for the unit is used.

Language Representation
Ice enum UnitsLength { MICROM, ... };
Java and Python omero.model.enums.UnitsLength.MICROM
C++ omero::model::enums::MICROM
PostgreSQL ‘µm’::unitslength

Defining a unit

Pixels p = ...; // Defined elsewhere
Length l = new LengthI(2.1, UnitsLength.MICROM); // µm
p.setPhysicalSizeX(l);
p.setPhysicalSizeY(l);
iUpdatePrx.saveObject(p);

The above stores a Pixels object in the database with X and Y physical lengths of “µm”.

Converting a unit

Often a measurement will not be in the most convenient unit for display, e.g. 0.00001 mm. could better be expressed in microns. In order to convert between units, pass the measurement that you have available to a constructor of the same type, passing in the target unit that you would like to see:

Pixels p = ...; // As saved above
Length l1 = p.getPhysicalSizeX(); // 2.1 microns
Length l2 = new LengthI(x1, UnitsLength.NM); // As nanometers

Getting a symbol

The enumerations used in the “units” field of each measurement is of type omero.model.enums.UnitsNAME where NAME is Length, Temperature, etc. These members of that enumeration are all uppercased, code-safe versions of the unit name. To get the symbol as defined in the SI specification, for example, use the getSymbol method:

Length l1 = ...; // As above
l1.getSymbol(); // Returns "µm"