Package ome.services.fulltext.bridges

Class TablesBridge

  • All Implemented Interfaces:
    org.hibernate.search.bridge.FieldBridge, org.springframework.beans.factory.Aware, org.springframework.context.ApplicationEventPublisherAware
    @Deprecated
public class TablesBridge
extends BridgeHelper
    Deprecated.
    Bridge for parsing OMERO.tables attached to container types. The column names are taken as field names on each image (or similar) found within the table. For example, if a table is attached to a plate and has an omero.grid.ImageColumn "IMAGE" along with one omero.grid.DoubleColumn named "SIZE", then a row with IMAGE == 1 and SIZE == 0.02 will add a field "SIZE" to the Image with id 1 so that a Lucene search "SIZE:0.02" will return that object. This is accomplished by detecting such OMERO.tables on the container and registering each row (above: IMAGE == 1, IMAGE == 2, etc) for later processing. When the element objects are handled, the container is found and the appropriate row processed. This two stage processingis necessary so that later indexing does not overwrite the table values.
    Since:
    4.3

    • Field Summary

      Fields 
      Modifier and Type Field Description
      java.lang.String OMERO_TABLE
      Deprecated.
      Mimetype set on OriginalFile.mimetype (or in previous version, OriginalFile.format.value).

    • Constructor Summary

      Constructors 
      Constructor Description
      TablesBridge()
      Deprecated.
       

    • Method Summary

      All Methods Instance Methods Concrete Methods Deprecated Methods 
      Modifier and Type Method Description
      protected void handleAnnotated​(ome.model.IAnnotated annotated, org.apache.lucene.document.Document document, org.hibernate.search.bridge.LuceneOptions opts)
      Deprecated.
      Responsible for iterating over any attached OMERO.tables and registering all appropriate row objects for later processing.
      protected void handleAnnotation​(ome.model.annotations.Annotation annotation, ome.services.fulltext.bridges.TablesBridge.RowProcessor proc)
      Deprecated.
      Detects if the given annotation contains an OMERO.table and if so, passes it off for further processing.
      protected void handleHdf5​(java.lang.String path, ome.services.fulltext.bridges.TablesBridge.RowProcessor proc)
      Deprecated.
      Process a single OMERO.tables file.
      protected void handleImage​(ome.model.core.Image image, org.apache.lucene.document.Document document, org.hibernate.search.bridge.LuceneOptions opts)
      Deprecated.
      Processes any annotations attached to the following types which contain this image: Plate, Dataset
      void set​(java.lang.String name, java.lang.Object value, org.apache.lucene.document.Document document, org.hibernate.search.bridge.LuceneOptions opts)
      Deprecated.
      Primary entry point for all bridges.
      void setApplicationEventPublisher​(org.springframework.context.ApplicationEventPublisher publisher)
      Deprecated.
       

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Field Detail

      • OMERO_TABLE

        public final java.lang.String OMERO_TABLE
        Deprecated.
        Mimetype set on OriginalFile.mimetype (or in previous version, OriginalFile.format.value).
        See Also:
        Constant Field Values

    • Constructor Detail

      • TablesBridge

        public TablesBridge()
        Deprecated.

    • Method Detail

      • setApplicationEventPublisher

        public void setApplicationEventPublisher​(org.springframework.context.ApplicationEventPublisher publisher)
        Deprecated.
        Specified by:
        setApplicationEventPublisher in interface org.springframework.context.ApplicationEventPublisherAware
        Overrides:
        setApplicationEventPublisher in class BridgeHelper

      • set

        public void set​(java.lang.String name,
                java.lang.Object value,
                org.apache.lucene.document.Document document,
                org.hibernate.search.bridge.LuceneOptions opts)
        Deprecated.
        Primary entry point for all bridges.
        Specified by:
        set in interface org.hibernate.search.bridge.FieldBridge
        Specified by:
        set in class BridgeHelper

      • handleImage

        protected void handleImage​(ome.model.core.Image image,
                           org.apache.lucene.document.Document document,
                           org.hibernate.search.bridge.LuceneOptions opts)
        Deprecated.
        Processes any annotations attached to the following types which contain this image: Plate, Dataset

      • handleAnnotated

        protected void handleAnnotated​(ome.model.IAnnotated annotated,
                               org.apache.lucene.document.Document document,
                               org.hibernate.search.bridge.LuceneOptions opts)
        Deprecated.
        Responsible for iterating over any attached OMERO.tables and registering all appropriate row objects for later processing. For example, if the table has an omero.grid.ImageColumn with ids 1, 2, 3, and 4, then 4 image objects will be registered for later processing by handleImage(Image, Document, LuceneOptions).

      • handleAnnotation

        protected void handleAnnotation​(ome.model.annotations.Annotation annotation,
                                ome.services.fulltext.bridges.TablesBridge.RowProcessor proc)
        Deprecated.
        Detects if the given annotation contains an OMERO.table and if so, passes it off for further processing.

      • handleHdf5

        protected void handleHdf5​(java.lang.String path,
                          ome.services.fulltext.bridges.TablesBridge.RowProcessor proc)
        Deprecated.
        Process a single OMERO.tables file. This method is primarily responsible for iteration and the try/finally logic to guarantee cleanup, etc.