Package ome.services.roi

Class GeomTool

  • public class GeomTool
extends java.lang.Object
    Strategy for handling the conversion between shapes and database-specific geometries.
    Since:
    Beta4.1

    • Field Summary

      Fields 
      Modifier and Type Field Description
      protected PixelData data  
      protected ome.services.util.Executor ex  
      protected ome.tools.hibernate.SessionFactory factory  
      protected java.util.concurrent.atomic.AtomicBoolean hasShapes  
      protected org.slf4j.Logger log  
      protected ome.util.SqlAction sql  
      protected java.lang.String uuid  

    • Constructor Summary

      Constructors 
      Constructor Description
      GeomTool​(PixelData data, ome.util.SqlAction sql, ome.tools.hibernate.SessionFactory factory)  
      GeomTool​(PixelData data, ome.util.SqlAction sql, ome.tools.hibernate.SessionFactory factory, ome.services.util.Executor ex, java.lang.String uuid)  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.lang.String dbPath​(Shape shape)  
      java.lang.Object discriminator​(java.lang.String string)
      Maps from multiple possible user-provided names of shapes (e.g.
      Ellipse ellipse​(double x, double y, double radiusx, double radiusy)  
      Ellipse ellipse​(double x, double y, double radiusx, double radiusy, int t, int z)  
      ShapePoints getPoints​(long shapeId, org.hibernate.Session session)  
      RoiStats getStats​(java.util.List<java.lang.Long> shapeIds)  
      ShapeStats[] getStatsRestricted​(java.util.List<java.lang.Long> shapeIds, int zForUnattached, int tForUnattached, int[] channels)  
      Line ln​(double x1, double y1, double x2, double y2)  
      Point pt​(double x, double y)  
      java.util.List<Shape> random​(int count)  
      Rectangle rect​(double x, double y, double w, double h)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Field Detail

      • log

        protected org.slf4j.Logger log

      • hasShapes

        protected final java.util.concurrent.atomic.AtomicBoolean hasShapes

      • sql

        protected final ome.util.SqlAction sql

      • factory

        protected final ome.tools.hibernate.SessionFactory factory

      • ex

        protected final ome.services.util.Executor ex

      • uuid

        protected final java.lang.String uuid

    • Constructor Detail

      • GeomTool

        public GeomTool​(PixelData data,
                ome.util.SqlAction sql,
                ome.tools.hibernate.SessionFactory factory)

      • GeomTool

        public GeomTool​(PixelData data,
                ome.util.SqlAction sql,
                ome.tools.hibernate.SessionFactory factory,
                ome.services.util.Executor ex,
                java.lang.String uuid)

    • Method Detail

      • random

        public java.util.List<Shape> random​(int count)

      • ln

        public Line ln​(double x1,
               double y1,
               double x2,
               double y2)

      • rect

        public Rectangle rect​(double x,
                      double y,
                      double w,
                      double h)

      • pt

        public Point pt​(double x,
                double y)

      • ellipse

        public Ellipse ellipse​(double x,
                       double y,
                       double radiusx,
                       double radiusy)

      • ellipse

        public Ellipse ellipse​(double x,
                       double y,
                       double radiusx,
                       double radiusy,
                       int t,
                       int z)

      • dbPath

        public java.lang.String dbPath​(Shape shape)

      • getPoints

        public ShapePoints getPoints​(long shapeId,
                             org.hibernate.Session session)

      • getStats

        public RoiStats getStats​(java.util.List<java.lang.Long> shapeIds)

      • getStatsRestricted

        public ShapeStats[] getStatsRestricted​(java.util.List<java.lang.Long> shapeIds,
                                       int zForUnattached,
                                       int tForUnattached,
                                       int[] channels)

      • discriminator

        public java.lang.Object discriminator​(java.lang.String string)
        Maps from multiple possible user-provided names of shapes (e.g. "::omero::model::Text", "Text", "TextI", "omero.model.TextI", "ome.model.roi.Text", ...) to the definitive database discriminator.
        Parameters:
        string - The string to check.
        Returns:
        See above.