| ome::assertId(const boost::optional< boost::filesystem::path > &id, bool notNull=true) | ome::files::FormatHandler | inlinestatic |
| ome::files::FormatHandler::assertId(const boost::optional< boost::filesystem::path > &id, bool notNull=true) | ome::files::FormatHandler | inlinestatic |
| CAN_GROUP enum value | ome::files::FormatReader | |
| CANNOT_GROUP enum value | ome::files::FormatReader | |
| ome::checkSuffix(const boost::filesystem::path &name, const boost::filesystem::path &suffix) | ome::files::FormatHandler | inlinestatic |
| ome::checkSuffix(const boost::filesystem::path &name, const std::vector< boost::filesystem::path > &suffixes) | ome::files::FormatHandler | inlinestatic |
| ome::checkSuffix(const boost::filesystem::path &name, const std::vector< boost::filesystem::path > &suffixes, const std::vector< boost::filesystem::path > &compression_suffixes) | ome::files::FormatHandler | inlinestatic |
| ome::files::FormatHandler::checkSuffix(const boost::filesystem::path &name, const boost::filesystem::path &suffix) | ome::files::FormatHandler | inlinestatic |
| ome::files::FormatHandler::checkSuffix(const boost::filesystem::path &name, const std::vector< boost::filesystem::path > &suffixes) | ome::files::FormatHandler | inlinestatic |
| ome::files::FormatHandler::checkSuffix(const boost::filesystem::path &name, const std::vector< boost::filesystem::path > &suffixes, const std::vector< boost::filesystem::path > &compression_suffixes) | ome::files::FormatHandler | inlinestatic |
| close(bool fileOnly=false) | ome::files::in::TIFFReader | virtual |
| companionFiles | ome::files::detail::FormatReader | protected |
| core | ome::files::detail::FormatReader | protected |
| coreIndex | ome::files::detail::FormatReader | mutableprotected |
| coreIndexToSeries(dimension_size_type index) const | ome::files::detail::FormatReader | virtual |
| coremetadata_list_type typedef | ome::files::detail::FormatReader | protected |
| currentId | ome::files::detail::FormatReader | protected |
| datasetDescription | ome::files::detail::FormatReader | protected |
| domains | ome::files::detail::FormatReader | protected |
| FileGroupOption enum name | ome::files::FormatReader | |
| fileGroupOption(const std::string &id) | ome::files::detail::FormatReader | virtual |
| filterMetadata | ome::files::detail::FormatReader | protected |
| flattenedResolutions | ome::files::detail::FormatReader | protected |
| ome::FormatHandler() | ome::files::FormatHandler | inlineprotected |
| ome::files::FormatHandler::FormatHandler() | ome::files::FormatHandler | inlineprotected |
| FormatReader(const ReaderProperties &) | ome::files::detail::FormatReader | protected |
| ome::files::FormatReader::FormatReader() | ome::files::FormatReader | inlineprotected |
| getAdvancedSeriesUsedFiles(bool noPixels=false) const | ome::files::detail::FormatReader | virtual |
| getAdvancedUsedFiles(bool noPixels=false) const | ome::files::detail::FormatReader | virtual |
| getBitsPerPixel() const | ome::files::detail::FormatReader | virtual |
| getCompressionSuffixes() const | ome::files::detail::FormatReader | virtual |
| getCoreIndex() const | ome::files::detail::FormatReader | virtual |
| getCoreMetadata(dimension_size_type index) const | ome::files::detail::FormatReader | inlineprotected |
| getCoreMetadata(dimension_size_type index) | ome::files::detail::FormatReader | inlineprotected |
| getCoreMetadataList() const | ome::files::detail::FormatReader | virtual |
| getCurrentFile() const | ome::files::detail::FormatReader | virtual |
| getDatasetStructureDescription() const | ome::files::detail::FormatReader | virtual |
| getDimensionOrder() const | ome::files::detail::FormatReader | virtual |
| getDomains() const | ome::files::detail::FormatReader | virtual |
| getEffectiveSizeC() const | ome::files::detail::FormatReader | virtual |
| getFormat() const | ome::files::detail::FormatReader | virtual |
| getFormatDescription() const | ome::files::detail::FormatReader | virtual |
| getGlobalMetadata() const | ome::files::detail::FormatReader | virtual |
| getImageCount() const | ome::files::detail::FormatReader | virtual |
| getIndex(dimension_size_type z, dimension_size_type c, dimension_size_type t) const | ome::files::detail::FormatReader | virtual |
| getIndex(dimension_size_type z, dimension_size_type c, dimension_size_type t, dimension_size_type moduloZ, dimension_size_type moduloC, dimension_size_type moduloT) const | ome::files::detail::FormatReader | virtual |
| getLookupTable(dimension_size_type plane, VariantPixelBuffer &buf) const | ome::files::in::MinimalTIFFReader | virtual |
| getMetadataOptions() const | ome::files::detail::FormatReader | virtual |
| getMetadataOptions() | ome::files::detail::FormatReader | virtual |
| getMetadataStore() const | ome::files::detail::FormatReader | virtual |
| getMetadataStore() | ome::files::detail::FormatReader | virtual |
| getMetadataValue(const std::string &field) const | ome::files::detail::FormatReader | virtual |
| getModuloC() | ome::files::detail::FormatReader | virtual |
| getModuloC() const | ome::files::detail::FormatReader | virtual |
| getModuloT() | ome::files::detail::FormatReader | virtual |
| getModuloT() const | ome::files::detail::FormatReader | virtual |
| getModuloZ() | ome::files::detail::FormatReader | virtual |
| getModuloZ() const | ome::files::detail::FormatReader | virtual |
| getOptimalTileHeight(dimension_size_type channel) const | ome::files::detail::FormatReader | virtual |
| getOptimalTileHeight() const | ome::files::detail::FormatReader | virtual |
| getOptimalTileWidth(dimension_size_type channel) const | ome::files::detail::FormatReader | virtual |
| getOptimalTileWidth() const | ome::files::detail::FormatReader | virtual |
| getPixelType() const | ome::files::detail::FormatReader | virtual |
| getPlane() const | ome::files::detail::FormatReader | virtual |
| getPossibleDomains(const std::string &id) const | ome::files::detail::FormatReader | virtual |
| getRequiredDirectories(const std::vector< std::string > &files) const | ome::files::detail::FormatReader | virtual |
| getResolution() const | ome::files::detail::FormatReader | virtual |
| getResolutionCount() const | ome::files::detail::FormatReader | virtual |
| getRGBChannelCount(dimension_size_type channel) const | ome::files::detail::FormatReader | virtual |
| getSeries() const | ome::files::detail::FormatReader | virtual |
| getSeriesCount() const | ome::files::detail::FormatReader | virtual |
| getSeriesMetadata() const | ome::files::detail::FormatReader | virtual |
| getSeriesMetadataValue(const MetadataMap::key_type &field) const | ome::files::detail::FormatReader | virtual |
| getSeriesUsedFiles(bool noPixels=false) const | ome::files::detail::FormatReader | virtual |
| getSizeC() const | ome::files::detail::FormatReader | virtual |
| getSizeT() const | ome::files::detail::FormatReader | virtual |
| getSizeX() const | ome::files::detail::FormatReader | virtual |
| getSizeY() const | ome::files::detail::FormatReader | virtual |
| getSizeZ() const | ome::files::detail::FormatReader | virtual |
| getSuffixes() const | ome::files::detail::FormatReader | virtual |
| getSupportedMetadataLevels() | ome::files::detail::FormatReader | virtual |
| getThumbSize() const | ome::files::detail::FormatReader | protected |
| getThumbSizeX() const | ome::files::detail::FormatReader | virtual |
| getThumbSizeY() const | ome::files::detail::FormatReader | virtual |
| getTIFF() | ome::files::in::MinimalTIFFReader | |
| getTIFF() const | ome::files::in::MinimalTIFFReader | |
| getUnderlyingReaders() const | ome::files::detail::FormatReader | virtual |
| getUsedFiles(bool noPixels=false) const | ome::files::detail::FormatReader | virtual |
| getZCTCoords(dimension_size_type index) const | ome::files::detail::FormatReader | virtual |
| getZCTModuloCoords(dimension_size_type index) const | ome::files::detail::FormatReader | virtual |
| group | ome::files::detail::FormatReader | protected |
| hasCompanionFiles() const | ome::files::detail::FormatReader | virtual |
| hasFlattenedResolutions() const | ome::files::detail::FormatReader | virtual |
| ifdAtIndex(dimension_size_type plane) const | ome::files::in::MinimalTIFFReader | protected |
| ijmeta | ome::files::in::TIFFReader | protected |
| in | ome::files::detail::FormatReader | protected |
| indexedAsRGB | ome::files::detail::FormatReader | protected |
| initFile(const boost::filesystem::path &id) | ome::files::in::MinimalTIFFReader | protectedvirtual |
| isFalseColor() const | ome::files::detail::FormatReader | virtual |
| isFilenameThisTypeImpl(const boost::filesystem::path &name) const | ome::files::in::MinimalTIFFReader | protectedvirtual |
| isGroupFiles() const | ome::files::detail::FormatReader | virtual |
| isIndexed() const | ome::files::detail::FormatReader | virtual |
| isInterleaved() const | ome::files::detail::FormatReader | virtual |
| isInterleaved(dimension_size_type subC) const | ome::files::detail::FormatReader | virtual |
| isLittleEndian() const | ome::files::detail::FormatReader | virtual |
| isMetadataComplete() const | ome::files::detail::FormatReader | virtual |
| isMetadataFiltered() const | ome::files::detail::FormatReader | virtual |
| isNormalized() const | ome::files::detail::FormatReader | virtual |
| isOrderCertain() const | ome::files::detail::FormatReader | virtual |
| isOriginalMetadataPopulated() const | ome::files::detail::FormatReader | virtual |
| isRGB(dimension_size_type channel) const | ome::files::detail::FormatReader | virtual |
| isSingleFile(const boost::filesystem::path &id) const | ome::files::detail::FormatReader | virtual |
| isStreamThisTypeImpl(std::istream &stream) const | ome::files::detail::FormatReader | protectedvirtual |
| isThisType(const boost::filesystem::path &name, bool open=true) const | ome::files::detail::FormatReader | virtual |
| isThisType(const uint8_t *begin, std::size_t length) const | ome::files::detail::FormatReader | virtual |
| isThisType(const uint8_t *begin, const uint8_t *end) const | ome::files::detail::FormatReader | virtual |
| isThisType(std::istream &stream) const | ome::files::detail::FormatReader | virtual |
| isThumbnailSeries() const | ome::files::detail::FormatReader | virtual |
| isUsedFile(const boost::filesystem::path &file) | ome::files::detail::FormatReader | protectedvirtual |
| makeFilterMetadata() | ome::files::detail::FormatReader | protectedvirtual |
| metadata | ome::files::detail::FormatReader | protected |
| MetadataConfigurable() | ome::files::MetadataConfigurable | protected |
| metadataOptions | ome::files::detail::FormatReader | protected |
| metadataStore | ome::files::detail::FormatReader | protected |
| MinimalTIFFReader() | ome::files::in::MinimalTIFFReader | |
| MinimalTIFFReader(const ome::files::detail::ReaderProperties &readerProperties) | ome::files::in::MinimalTIFFReader | |
| MUST_GROUP enum value | ome::files::FormatReader | |
| normalizeData | ome::files::detail::FormatReader | protected |
| openBytes(dimension_size_type plane, VariantPixelBuffer &buf) const | ome::files::detail::FormatReader | virtual |
| openBytes(dimension_size_type plane, VariantPixelBuffer &buf, dimension_size_type x, dimension_size_type y, dimension_size_type w, dimension_size_type h) const | ome::files::detail::FormatReader | virtual |
| openBytesImpl(dimension_size_type plane, VariantPixelBuffer &buf, dimension_size_type x, dimension_size_type y, dimension_size_type w, dimension_size_type h) const | ome::files::in::MinimalTIFFReader | protectedvirtual |
| openThumbBytes(dimension_size_type plane, VariantPixelBuffer &buf) const | ome::files::detail::FormatReader | virtual |
| plane | ome::files::detail::FormatReader | mutableprotected |
| readerProperties | ome::files::detail::FormatReader | protected |
| readIFDs() | ome::files::in::TIFFReader | protectedvirtual |
| readPlane(std::istream &source, VariantPixelBuffer &dest, dimension_size_type x, dimension_size_type y, dimension_size_type w, dimension_size_type h, dimension_size_type samples) | ome::files::detail::FormatReader | protectedvirtual |
| readPlane(std::istream &source, VariantPixelBuffer &dest, dimension_size_type x, dimension_size_type y, dimension_size_type w, dimension_size_type h, dimension_size_type scanlinePad, dimension_size_type samples) | ome::files::detail::FormatReader | protectedvirtual |
| resolution | ome::files::detail::FormatReader | mutableprotected |
| saveOriginalMetadata | ome::files::detail::FormatReader | protected |
| series | ome::files::detail::FormatReader | mutableprotected |
| seriesIFDRange | ome::files::in::MinimalTIFFReader | protected |
| seriesToCoreIndex(dimension_size_type series) const | ome::files::detail::FormatReader | virtual |
| setCoreIndex(dimension_size_type index) const | ome::files::detail::FormatReader | virtual |
| setFlattenedResolutions(bool flatten) | ome::files::detail::FormatReader | virtual |
| setGroupFiles(bool group) | ome::files::detail::FormatReader | virtual |
| setId(const boost::filesystem::path &id) | ome::files::detail::FormatReader | virtual |
| setMetadataFiltered(bool filter) | ome::files::detail::FormatReader | virtual |
| setMetadataOptions(const MetadataOptions &options) | ome::files::detail::FormatReader | virtual |
| setMetadataStore(std::shared_ptr<::ome::xml::meta::MetadataStore > &store) | ome::files::detail::FormatReader | virtual |
| setNormalized(bool normalize) | ome::files::detail::FormatReader | virtual |
| setOriginalMetadataPopulated(bool populate) | ome::files::detail::FormatReader | virtual |
| setPlane(dimension_size_type plane) const | ome::files::detail::FormatReader | virtual |
| setResolution(dimension_size_type resolution) const | ome::files::detail::FormatReader | virtual |
| setSeries(dimension_size_type series) const | ome::files::detail::FormatReader | virtual |
| suffixNecessary | ome::files::detail::FormatReader | protected |
| suffixSufficient | ome::files::detail::FormatReader | protected |
| tiff | ome::files::in::MinimalTIFFReader | protected |
| TIFFReader() | ome::files::in::TIFFReader | |
| ~FormatHandler() | ome::files::FormatHandler | inlinevirtual |
| ~FormatReader() | ome::files::detail::FormatReader | virtual |
| ~MetadataConfigurable() | ome::files::MetadataConfigurable | virtual |
| ~MinimalTIFFReader() | ome::files::in::MinimalTIFFReader | virtual |
| ~TIFFReader() | ome::files::in::TIFFReader | virtual |
