ome-files  0.5.0
MinimalTIFFReader.h
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3  * OME-FILES C++ library for image IO.
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37 
38 #ifndef OME_FILES_IN_MINIMALTIFFREADER_H
39 #define OME_FILES_IN_MINIMALTIFFREADER_H
40 
41 #include <ome/files/detail/FormatReader.h>
42 
43 #include <ome/files/tiff/Util.h>
44 
45 #include <vector>
46 
47 namespace ome
48 {
49  namespace files
50  {
51  namespace tiff
52  {
53 
54  class TIFF;
55  class IFD;
56 
57  }
58 
60  namespace in
61  {
62 
70  {
71  protected:
73  std::shared_ptr<ome::files::tiff::TIFF> tiff;
74 
77 
78  public:
81 
88 
90  virtual
92 
93  protected:
94  // Documented in superclass.
95  void
96  initFile(const boost::filesystem::path& id);
97 
101  virtual
102  void
103  readIFDs();
104 
105  // Documented in superclass.
106  bool
107  isFilenameThisTypeImpl(const boost::filesystem::path& name) const;
108 
116  const std::shared_ptr<const tiff::IFD>
117  ifdAtIndex(dimension_size_type plane) const;
118 
119  public:
120  // Documented in superclass.
121  void
122  close(bool fileOnly = false);
123 
124  // Documented in superclass.
125  void
126  getLookupTable(dimension_size_type plane,
127  VariantPixelBuffer& buf) const;
128 
129  protected:
130  // Documented in superclass.
131  void
132  openBytesImpl(dimension_size_type plane,
133  VariantPixelBuffer& buf,
137  dimension_size_type h) const;
138 
139  public:
147  std::shared_ptr<ome::files::tiff::TIFF>
148  getTIFF();
149 
157  const std::shared_ptr<ome::files::tiff::TIFF>
158  getTIFF() const;
159  };
160 
161  }
162  }
163 }
164 
165 #endif // OME_FILES_IN_MINIMALTIFFREADER_H
166 
167 /*
168  * Local Variables:
169  * mode:C++
170  * End:
171  */
Basic TIFF reader.
Definition: MinimalTIFFReader.h:69
Properties specific to a particular reader.
Definition: FormatReader.h:64
std::vector< IFDRange > SeriesIFDRange
Mapping between series index and IFD range.
Definition: Util.h:103
Tagged Image File Format (TIFF).
Definition: TIFF.h:156
std::size_t dimension_size_type
Size type for image dimensions.
Definition: Types.h:58
std::shared_ptr< ome::files::tiff::TIFF > tiff
Underlying TIFF file.
Definition: MinimalTIFFReader.h:73
Open Microscopy Environment C++.
Interface for all biological file format readers (default behaviour).
Definition: FormatReader.h:107
tiff::SeriesIFDRange seriesIFDRange
Mapping between series index and start and end IFD as a half-open range.
Definition: MinimalTIFFReader.h:76
Image File Directory (IFD).
Definition: IFD.h:70
Buffer for all pixel types.
Definition: VariantPixelBuffer.h:78