ome-files  0.5.0
IFD.h
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3  * OME-FILES C++ library for image IO.
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37 
38 #ifndef OME_FILES_TIFF_IFD_H
39 #define OME_FILES_TIFF_IFD_H
40 
41 #include <memory>
42 #include <string>
43 
44 #include <ome/files/CoreMetadata.h>
45 #include <ome/files/TileCoverage.h>
46 #include <ome/files/tiff/TileInfo.h>
47 #include <ome/files/tiff/Types.h>
48 #include <ome/files/VariantPixelBuffer.h>
49 
50 #include <ome/xml/model/enums/PixelType.h>
51 
52 namespace ome
53 {
54  namespace files
55  {
56  namespace tiff
57  {
58 
59  class TIFF;
60 
62  template<typename Tag>
63  class Field;
64 
70  class IFD : public std::enable_shared_from_this<IFD>
71  {
72  private:
73  class Impl;
75  std::shared_ptr<Impl> impl;
76 
77  protected:
84  IFD(std::shared_ptr<TIFF>& tiff,
85  offset_type offset);
86 
92  IFD(std::shared_ptr<TIFF>& tiff);
93 
95  IFD (const IFD&) = delete;
96 
97  IFD&
98  operator= (const IFD&) = delete;
100 
101  public:
103  virtual ~IFD();
104 
114  static std::shared_ptr<IFD>
115  openIndex(std::shared_ptr<TIFF>& tiff,
116  directory_index_type index);
117 
125  static std::shared_ptr<IFD>
126  openOffset(std::shared_ptr<TIFF>& tiff,
127  offset_type offset);
128 
135  static std::shared_ptr<IFD>
136  current(std::shared_ptr<TIFF>& tiff);
137 
143  std::shared_ptr<TIFF>&
144  getTIFF() const;
145 
151  void
152  makeCurrent() const;
153 
162  getOffset() const;
163 
174  void
175  getRawField(tag_type tag,
176  ...) const;
177 
189  void
191  ...) const;
192 
203  void
204  setRawField(tag_type tag,
205  ...);
206 
213  template<typename TagCategory>
215  getField(TagCategory tag)
216  {
217  return Field<TagCategory>(this->shared_from_this(), tag);
218  }
219 
226  template<typename TagCategory>
227  const Field<TagCategory>
228  getField(TagCategory tag) const
229  {
230  return Field<TagCategory>(const_cast<IFD *>(this)->shared_from_this(), tag);
231  }
232 
238  TileType
239  getTileType() const;
240 
246  void
247  setTileType(TileType type);
248 
257  getCurrentTile() const;
258 
270  void
272 
279  TileInfo
280  getTileInfo();
281 
288  const TileInfo
289  getTileInfo() const;
290 
296  std::vector<TileCoverage>&
297  getTileCoverage();
298 
304  const std::vector<TileCoverage>&
305  getTileCoverage() const;
306 
312  uint32_t
313  getImageWidth() const;
314 
320  void
321  setImageWidth(uint32_t width);
322 
328  uint32_t
329  getImageHeight() const;
330 
336  void
337  setImageHeight(uint32_t height);
338 
344  uint32_t
345  getTileWidth() const;
346 
352  void
353  setTileWidth(uint32_t width);
354 
360  uint32_t
361  getTileHeight() const;
362 
368  void
369  setTileHeight(uint32_t height);
370 
382  getPixelType() const;
383 
393  void
395 
401  uint16_t
402  getBitsPerSample() const;
403 
409  void
410  setBitsPerSample(uint16_t samples);
411 
417  uint16_t
418  getSamplesPerPixel() const;
419 
425  void
426  setSamplesPerPixel(uint16_t samples);
427 
434  getPlanarConfiguration() const;
435 
441  void
443 
451 
457  void
459 
466  getCompression() const;
467 
473  void
474  setCompression(Compression compression);
475 
481  void
482  readImage(VariantPixelBuffer& buf) const;
483 
488  void
490  dimension_size_type subC) const;
491 
506  void
511  dimension_size_type h) const;
512 
517  void
523  dimension_size_type subC) const;
524 
530  void
532 
538  void
539  writeImage(const VariantPixelBuffer& buf);
540 
545  void
546  writeImage(const VariantPixelBuffer& buf,
547  dimension_size_type subC);
548 
562  void
563  writeImage(const VariantPixelBuffer& source,
568 
573  void
574  writeImage(const VariantPixelBuffer& source,
579  dimension_size_type subC);
580 
586  std::shared_ptr<IFD>
587  next() const;
588 
594  bool
595  last() const;
596  };
597 
598  }
599  }
600 }
601 
602 #endif // OME_FILES_TIFF_IFD_H
603 
604 /*
605  * Local Variables:
606  * mode:C++
607  * End:
608  */
TileType
Type of tile.
Definition: Types.h:217
void setPlanarConfiguration(PlanarConfiguration planarconfig)
Set planar configuration.
Definition: IFD.cpp:1174
void setTileHeight(uint32_t height)
Set the tile height.
Definition: IFD.cpp:963
void setSamplesPerPixel(uint16_t samples)
Set samples per pixel.
Definition: IFD.cpp:1155
static std::shared_ptr< IFD > openOffset(std::shared_ptr< TIFF > &tiff, offset_type offset)
Open an IFD.
Definition: IFD.cpp:680
std::shared_ptr< Impl > impl
Private implementation details.
Definition: IFD.h:73
void setCompression(Compression compression)
Set compression scheme.
Definition: IFD.cpp:1212
std::size_t dimension_size_type
Size type for image dimensions.
Definition: Types.h:58
uint32_t getTileWidth() const
Get the tile width.
Definition: IFD.cpp:909
void setCurrentTile(dimension_size_type tile)
Set the current tile being written.
Definition: IFD.cpp:841
Tile information for an IFD.
Definition: TileInfo.h:61
void setPixelType(::ome::xml::model::enums::PixelType type)
Set the OME data model PixelType.
Definition: IFD.cpp:1077
PlanarConfiguration
Planar configuration of samples.
Definition: Types.h:176
void getRawField(tag_type tag,...) const
Get a field by its tag number.
Definition: IFD.cpp:724
void setPhotometricInterpretation(PhotometricInterpretation photometric)
Set photometric interpretation.
Definition: IFD.cpp:1193
unsigned int tag_type
Tag number.
Definition: Types.h:68
void makeCurrent() const
Make this IFD the current directory.
Definition: IFD.cpp:697
PhotometricInterpretation getPhotometricInterpretation() const
Get photometric interpretation.
Definition: IFD.cpp:1181
PlanarConfiguration getPlanarConfiguration() const
Get planar configuration.
Definition: IFD.cpp:1162
void readLookupTable(VariantPixelBuffer &buf) const
Read a lookup table into a pixel buffer.
Definition: IFD.cpp:1286
uint32_t getTileHeight() const
Get the tile height.
Definition: IFD.cpp:942
static std::shared_ptr< IFD > openIndex(std::shared_ptr< TIFF > &tiff, directory_index_type index)
Open an IFD by index.
Definition: IFD.cpp:664
Compression
Compression technique.
Definition: Types.h:93
static std::shared_ptr< IFD > current(std::shared_ptr< TIFF > &tiff)
Get the current IFD.
Definition: IFD.cpp:689
uint64_t offset_type
IFD offset.
Definition: Types.h:65
uint16_t getSamplesPerPixel() const
Get samples per pixel.
Definition: IFD.cpp:1143
const Field< TagCategory > getField(TagCategory tag) const
Get a Field by its tag enumeration.
Definition: IFD.h:228
std::shared_ptr< IFD > next() const
Get next directory.
Definition: IFD.cpp:1425
Open Microscopy Environment C++.
void setTileType(TileType type)
Set the tile type.
Definition: IFD.cpp:829
std::vector< TileCoverage > & getTileCoverage()
Get tile coverage cache.
Definition: IFD.cpp:859
void writeImage(const VariantPixelBuffer &buf)
Write a whole image plane from a pixel buffer.
Definition: IFD.cpp:1332
virtual ~IFD()
Destructor.
Definition: IFD.cpp:659
void setTileWidth(uint32_t width)
Set the tile width.
Definition: IFD.cpp:928
void setRawField(tag_type tag,...)
Set a field by its tag number.
Definition: IFD.cpp:782
uint32_t getImageHeight() const
Get the image height.
Definition: IFD.cpp:890
offset_type getOffset() const
Get the directory offset.
Definition: IFD.cpp:718
bool last() const
Check if this is the last directory.
Definition: IFD.cpp:1446
void readImage(VariantPixelBuffer &buf) const
Read a whole image plane into a pixel buffer.
Definition: IFD.cpp:1219
TileType getTileType() const
Get the tile type.
Definition: IFD.cpp:807
Field representing a tag value.
Definition: Field.h:156
void setImageHeight(uint32_t height)
Set the image height.
Definition: IFD.cpp:902
Internal implementation details of OffsetIFD.
Definition: IFD.cpp:572
::ome::xml::model::enums::PixelType getPixelType() const
Get the OME data model PixelType.
Definition: IFD.cpp:977
IFD(std::shared_ptr< TIFF > &tiff, offset_type offset)
Constructor (not public).
Definition: IFD.cpp:644
std::shared_ptr< TIFF > & getTIFF() const
Get the source TIFF this descriptor belongs to.
Definition: IFD.cpp:712
void setImageWidth(uint32_t width)
Set the image width.
Definition: IFD.cpp:883
void setBitsPerSample(uint16_t samples)
Set bits per sample.
Definition: IFD.cpp:1132
PhotometricInterpretation
Photometric interpretation of pixel data.
Definition: Types.h:158
TileInfo getTileInfo()
Get tiling metadata.
Definition: IFD.cpp:847
uint16_t directory_index_type
IFD index.
Definition: Types.h:62
Compression getCompression() const
Get compression scheme.
Definition: IFD.cpp:1200
Image File Directory (IFD).
Definition: IFD.h:70
uint16_t getBitsPerSample() const
Get bits per sample.
Definition: IFD.cpp:1120
void getRawFieldDefaulted(tag_type tag,...) const
Get a field by its tag number, falling back to default if unset.
Definition: IFD.cpp:753
Field< TagCategory > getField(TagCategory tag)
Get a Field by its tag enumeration.
Definition: IFD.h:215
dimension_size_type getCurrentTile() const
Get the current tile being written.
Definition: IFD.cpp:835
Buffer for all pixel types.
Definition: VariantPixelBuffer.h:78
uint32_t getImageWidth() const
Get the image width.
Definition: IFD.cpp:871