ICSReader

This page lists supported metadata fields for the Bio-Formats Image Cytometry Standard format reader.

These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.

Of the 476 fields documented in the metadata summary table:

• The file format itself supports 72 of them (15%).

• Of those, Bio-Formats fully or partially converts 72 (100%).

Supported fields

These fields are fully supported by the Bio-Formats Image Cytometry Standard format reader:

• Channel : EmissionWavelength

• Channel : ExcitationWavelength

• Channel : ID

• Channel : Name

• Channel : PinholeSize

• Channel : SamplesPerPixel

• Detector : ID

• Detector : Manufacturer

• Detector : Model

• Detector : Type

• DetectorSettings : Gain

• DetectorSettings : ID

• Dichroic : ID

• Dichroic : Model

• Experiment : ID

• Experiment : Type

• Experimenter : ID

• Experimenter : LastName

• Filter : ID

• Filter : Model

• FilterSet : DichroicRef

• FilterSet : EmissionFilterRef

• FilterSet : ExcitationFilterRef

• FilterSet : ID

• FilterSet : Model

• Image : AcquisitionDate

• Image : Description

• Image : ID

• Image : InstrumentRef

• Image : Name

• Instrument : ID

• Laser : ID

• Laser : LaserMedium

• Laser : Manufacturer

• Laser : Model

• Laser : Power

• Laser : RepetitionRate

• Laser : Type

• Laser : Wavelength

• Microscope : Manufacturer

• Microscope : Model

• Objective : CalibratedMagnification

• Objective : Correction

• Objective : ID

• Objective : Immersion

• Objective : LensNA

• Objective : Model

• Objective : WorkingDistance

• ObjectiveSettings : ID

• Pixels : BigEndian

• Pixels : DimensionOrder

• Pixels : ID

• Pixels : Interleaved

• Pixels : PhysicalSizeX

• Pixels : PhysicalSizeY

• Pixels : PhysicalSizeZ

• Pixels : SignificantBits

• Pixels : SizeC

• Pixels : SizeT

• Pixels : SizeX

• Pixels : SizeY

• Pixels : SizeZ

• Pixels : TimeIncrement

• Pixels : Type

• Plane : DeltaT

• Plane : ExposureTime

• Plane : PositionX

• Plane : PositionY

• Plane : PositionZ

• Plane : TheC

• Plane : TheT

• Plane : TheZ

Total supported: 72

Total unknown or missing: 404