******************************************************************************* ZeissCZIReader ******************************************************************************* This page lists supported metadata fields for the Bio-Formats Zeiss CZI format reader. These fields are from the :model_doc:`OME data model <>`. Bio-Formats standardizes each format's original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way. Of the 476 fields documented in the :doc:`metadata summary table `: * The file format itself supports 175 of them (36%). * Of those, Bio-Formats fully or partially converts 175 (100%). Supported fields =============================================================================== These fields are fully supported by the Bio-Formats Zeiss CZI format reader: * :schema:`Arc : LotNumber ` * :schema:`Arc : Manufacturer ` * :schema:`Arc : Model ` * :schema:`Arc : Power ` * :schema:`Arc : SerialNumber ` * :schema:`Channel : AcquisitionMode ` * :schema:`Channel : Color ` * :schema:`Channel : EmissionWavelength ` * :schema:`Channel : ExcitationWavelength ` * :schema:`Channel : FilterSetRef ` * :schema:`Channel : Fluor ` * :schema:`Channel : ID ` * :schema:`Channel : IlluminationType ` * :schema:`Channel : Name ` * :schema:`Channel : PinholeSize ` * :schema:`Channel : SamplesPerPixel ` * :schema:`Detector : AmplificationGain ` * :schema:`Detector : Gain ` * :schema:`Detector : ID ` * :schema:`Detector : LotNumber ` * :schema:`Detector : Manufacturer ` * :schema:`Detector : Model ` * :schema:`Detector : Offset ` * :schema:`Detector : SerialNumber ` * :schema:`Detector : Type ` * :schema:`Detector : Zoom ` * :schema:`DetectorSettings : Binning ` * :schema:`DetectorSettings : Gain ` * :schema:`DetectorSettings : ID ` * :schema:`Dichroic : ID ` * :schema:`Dichroic : LotNumber ` * :schema:`Dichroic : Manufacturer ` * :schema:`Dichroic : Model ` * :schema:`Dichroic : SerialNumber ` * :schema:`Ellipse : ID ` * :schema:`Ellipse : RadiusX ` * :schema:`Ellipse : RadiusY ` * :schema:`Ellipse : Text ` * :schema:`Ellipse : X ` * :schema:`Ellipse : Y ` * :schema:`Experimenter : Email ` * :schema:`Experimenter : FirstName ` * :schema:`Experimenter : ID ` * :schema:`Experimenter : Institution ` * :schema:`Experimenter : LastName ` * :schema:`Experimenter : MiddleName ` * :schema:`Experimenter : UserName ` * :schema:`Filament : LotNumber ` * :schema:`Filament : Manufacturer ` * :schema:`Filament : Model ` * :schema:`Filament : Power ` * :schema:`Filament : SerialNumber ` * :schema:`Filter : FilterWheel ` * :schema:`Filter : ID ` * :schema:`Filter : LotNumber ` * :schema:`Filter : Manufacturer ` * :schema:`Filter : Model ` * :schema:`Filter : SerialNumber ` * :schema:`Filter : Type ` * :schema:`FilterSet : DichroicRef ` * :schema:`FilterSet : EmissionFilterRef ` * :schema:`FilterSet : ExcitationFilterRef ` * :schema:`FilterSet : ID ` * :schema:`FilterSet : LotNumber ` * :schema:`FilterSet : Manufacturer ` * :schema:`FilterSet : Model ` * :schema:`FilterSet : SerialNumber ` * :schema:`Image : AcquisitionDate ` * :schema:`Image : Description ` * :schema:`Image : ExperimenterRef ` * :schema:`Image : ID ` * :schema:`Image : InstrumentRef ` * :schema:`Image : Name ` * :schema:`Image : ROIRef ` * :schema:`ImagingEnvironment : AirPressure ` * :schema:`ImagingEnvironment : CO2Percent ` * :schema:`ImagingEnvironment : Humidity ` * :schema:`ImagingEnvironment : Temperature ` * :schema:`Instrument : ID ` * :schema:`Laser : LotNumber ` * :schema:`Laser : Manufacturer ` * :schema:`Laser : Model ` * :schema:`Laser : Power ` * :schema:`Laser : SerialNumber ` * :schema:`LightEmittingDiode : LotNumber ` * :schema:`LightEmittingDiode : Manufacturer ` * :schema:`LightEmittingDiode : Model ` * :schema:`LightEmittingDiode : Power ` * :schema:`LightEmittingDiode : SerialNumber ` * :schema:`Line : ID ` * :schema:`Line : Text ` * :schema:`Line : X1 ` * :schema:`Line : X2 ` * :schema:`Line : Y1 ` * :schema:`Line : Y2 ` * :schema:`Microscope : LotNumber ` * :schema:`Microscope : Manufacturer ` * :schema:`Microscope : Model ` * :schema:`Microscope : SerialNumber ` * :schema:`Microscope : Type ` * :schema:`Objective : CalibratedMagnification ` * :schema:`Objective : Correction ` * :schema:`Objective : ID ` * :schema:`Objective : Immersion ` * :schema:`Objective : Iris ` * :schema:`Objective : LensNA ` * :schema:`Objective : LotNumber ` * :schema:`Objective : Manufacturer ` * :schema:`Objective : Model ` * :schema:`Objective : NominalMagnification ` * :schema:`Objective : SerialNumber ` * :schema:`Objective : WorkingDistance ` * :schema:`ObjectiveSettings : CorrectionCollar ` * :schema:`ObjectiveSettings : ID ` * :schema:`ObjectiveSettings : Medium ` * :schema:`ObjectiveSettings : RefractiveIndex ` * :schema:`Pixels : BigEndian ` * :schema:`Pixels : DimensionOrder ` * :schema:`Pixels : ID ` * :schema:`Pixels : Interleaved ` * :schema:`Pixels : PhysicalSizeX ` * :schema:`Pixels : PhysicalSizeY ` * :schema:`Pixels : PhysicalSizeZ ` * :schema:`Pixels : SignificantBits ` * :schema:`Pixels : SizeC ` * :schema:`Pixels : SizeT ` * :schema:`Pixels : SizeX ` * :schema:`Pixels : SizeY ` * :schema:`Pixels : SizeZ ` * :schema:`Pixels : TimeIncrement ` * :schema:`Pixels : Type ` * :schema:`Plane : DeltaT ` * :schema:`Plane : ExposureTime ` * :schema:`Plane : PositionX ` * :schema:`Plane : PositionY ` * :schema:`Plane : PositionZ ` * :schema:`Plane : TheC ` * :schema:`Plane : TheT ` * :schema:`Plane : TheZ ` * :schema:`Plate : Columns ` * :schema:`Plate : ID ` * :schema:`Plate : Rows ` * :schema:`Point : ID ` * :schema:`Point : X ` * :schema:`Point : Y ` * :schema:`Polygon : ID ` * :schema:`Polygon : Points ` * :schema:`Polygon : Text ` * :schema:`Polyline : ID ` * :schema:`Polyline : Points ` * :schema:`Polyline : Text ` * :schema:`ROI : Description ` * :schema:`ROI : ID ` * :schema:`ROI : Name ` * :schema:`Rectangle : Height ` * :schema:`Rectangle : ID ` * :schema:`Rectangle : Text ` * :schema:`Rectangle : Width ` * :schema:`Rectangle : X ` * :schema:`Rectangle : Y ` * :schema:`StageLabel : Name ` * :schema:`StageLabel : X ` * :schema:`StageLabel : Y ` * :schema:`StageLabel : Z ` * :schema:`TransmittanceRange : CutIn ` * :schema:`TransmittanceRange : CutInTolerance ` * :schema:`TransmittanceRange : CutOut ` * :schema:`TransmittanceRange : CutOutTolerance ` * :schema:`TransmittanceRange : Transmittance ` * :schema:`Well : Column ` * :schema:`Well : ID ` * :schema:`Well : Row ` * :schema:`WellSample : ID ` * :schema:`WellSample : ImageRef ` * :schema:`WellSample : Index ` **Total supported: 175** **Total unknown or missing: 301**