CellH5Reader

This page lists supported metadata fields for the Bio-Formats CellH5 (HDF) format reader.

These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.

Of the 476 fields documented in the metadata summary table:

• The file format itself supports 41 of them (8%).
• Of those, Bio-Formats fully or partially converts 41 (100%).

Supported fields

These fields are fully supported by the Bio-Formats CellH5 (HDF) format reader:

• Channel : ID
• Channel : SamplesPerPixel
• Image : AcquisitionDate
• Image : ID
• Image : Name
• Image : ROIRef
• Pixels : BigEndian
• Pixels : DimensionOrder
• Pixels : ID
• Pixels : Interleaved
• Pixels : SignificantBits
• Pixels : SizeC
• Pixels : SizeT
• Pixels : SizeX
• Pixels : SizeY
• Pixels : SizeZ
• Pixels : Type
• Plane : TheC
• Plane : TheT
• Plane : TheZ
• Plate : ID
• Plate : Name
• ROI : ID
• ROI : Name
• Rectangle : Height
• Rectangle : ID
• Rectangle : StrokeColor
• Rectangle : Text
• Rectangle : TheC
• Rectangle : TheT
• Rectangle : TheZ
• Rectangle : Width
• Rectangle : X
• Rectangle : Y
• Well : Column
• Well : ExternalIdentifier
• Well : ID
• Well : Row
• WellSample : ID
• WellSample : ImageRef
• WellSample : Index

Total supported: 41

Total unknown or missing: 435