ICSReader¶
This page lists supported metadata fields for the Bio-Formats Image Cytometry Standard format reader.
These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.
- Of the 476 fields documented in the metadata summary table:
- The file format itself supports 72 of them (15%).
- Of those, Bio-Formats fully or partially converts 72 (100%).
Supported fields¶
- These fields are fully supported by the Bio-Formats Image Cytometry Standard format reader:
- Channel : EmissionWavelength
- Channel : ExcitationWavelength
- Channel : ID
- Channel : Name
- Channel : PinholeSize
- Channel : SamplesPerPixel
- Detector : ID
- Detector : Manufacturer
- Detector : Model
- Detector : Type
- DetectorSettings : Gain
- DetectorSettings : ID
- Dichroic : ID
- Dichroic : Model
- Experiment : ID
- Experiment : Type
- Experimenter : ID
- Experimenter : LastName
- Filter : ID
- Filter : Model
- FilterSet : DichroicRef
- FilterSet : EmissionFilterRef
- FilterSet : ExcitationFilterRef
- FilterSet : ID
- FilterSet : Model
- Image : AcquisitionDate
- Image : Description
- Image : ID
- Image : InstrumentRef
- Image : Name
- Instrument : ID
- Laser : ID
- Laser : LaserMedium
- Laser : Manufacturer
- Laser : Model
- Laser : Power
- Laser : RepetitionRate
- Laser : Type
- Laser : Wavelength
- Microscope : Manufacturer
- Microscope : Model
- Objective : CalibratedMagnification
- Objective : Correction
- Objective : ID
- Objective : Immersion
- Objective : LensNA
- Objective : Model
- Objective : WorkingDistance
- ObjectiveSettings : ID
- Pixels : BigEndian
- Pixels : DimensionOrder
- Pixels : ID
- Pixels : Interleaved
- Pixels : PhysicalSizeX
- Pixels : PhysicalSizeY
- Pixels : PhysicalSizeZ
- Pixels : SignificantBits
- Pixels : SizeC
- Pixels : SizeT
- Pixels : SizeX
- Pixels : SizeY
- Pixels : SizeZ
- Pixels : TimeIncrement
- Pixels : Type
- Plane : DeltaT
- Plane : ExposureTime
- Plane : PositionX
- Plane : PositionY
- Plane : PositionZ
- Plane : TheC
- Plane : TheT
- Plane : TheZ
Total supported: 72
Total unknown or missing: 404
