InCellReader¶
This page lists supported metadata fields for the Bio-Formats InCell 1000/2000 format reader.
These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.
- Of the 476 fields documented in the metadata summary table:
 - The file format itself supports 69 of them (14%).
 - Of those, Bio-Formats fully or partially converts 69 (100%).
 
Supported fields¶
- These fields are fully supported by the Bio-Formats InCell 1000/2000 format reader:
 - Channel : EmissionWavelength
 - Channel : ExcitationWavelength
 - Channel : ID
 - Channel : Name
 - Channel : SamplesPerPixel
 - Detector : ID
 - Detector : Model
 - Detector : Type
 - DetectorSettings : Binning
 - DetectorSettings : Gain
 - DetectorSettings : ID
 - Experiment : ID
 - Experiment : Type
 - Image : AcquisitionDate
 - Image : Description
 - Image : ExperimentRef
 - Image : ID
 - Image : InstrumentRef
 - Image : Name
 - ImagingEnvironment : Temperature
 - Instrument : ID
 - Objective : Correction
 - Objective : ID
 - Objective : Immersion
 - Objective : LensNA
 - Objective : Manufacturer
 - Objective : NominalMagnification
 - ObjectiveSettings : ID
 - ObjectiveSettings : RefractiveIndex
 - Pixels : BigEndian
 - Pixels : DimensionOrder
 - Pixels : ID
 - Pixels : Interleaved
 - Pixels : PhysicalSizeX
 - Pixels : PhysicalSizeY
 - Pixels : SignificantBits
 - Pixels : SizeC
 - Pixels : SizeT
 - Pixels : SizeX
 - Pixels : SizeY
 - Pixels : SizeZ
 - Pixels : Type
 - Plane : DeltaT
 - Plane : ExposureTime
 - Plane : PositionX
 - Plane : PositionY
 - Plane : PositionZ
 - Plane : TheC
 - Plane : TheT
 - Plane : TheZ
 - Plate : ColumnNamingConvention
 - Plate : Columns
 - Plate : ID
 - Plate : Name
 - Plate : RowNamingConvention
 - Plate : Rows
 - Plate : WellOriginX
 - Plate : WellOriginY
 - PlateAcquisition : ID
 - PlateAcquisition : MaximumFieldCount
 - PlateAcquisition : WellSampleRef
 - Well : Column
 - Well : ID
 - Well : Row
 - WellSample : ID
 - WellSample : ImageRef
 - WellSample : Index
 - WellSample : PositionX
 - WellSample : PositionY
 
Total supported: 69
Total unknown or missing: 407