InCellReader¶
This page lists supported metadata fields for the Bio-Formats InCell 1000/2000 format reader.
These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.
- Of the 476 fields documented in the metadata summary table:
- The file format itself supports 69 of them (14%).
- Of those, Bio-Formats fully or partially converts 69 (100%).
Supported fields¶
- These fields are fully supported by the Bio-Formats InCell 1000/2000 format reader:
- Channel : EmissionWavelength
- Channel : ExcitationWavelength
- Channel : ID
- Channel : Name
- Channel : SamplesPerPixel
- Detector : ID
- Detector : Model
- Detector : Type
- DetectorSettings : Binning
- DetectorSettings : Gain
- DetectorSettings : ID
- Experiment : ID
- Experiment : Type
- Image : AcquisitionDate
- Image : Description
- Image : ExperimentRef
- Image : ID
- Image : InstrumentRef
- Image : Name
- ImagingEnvironment : Temperature
- Instrument : ID
- Objective : Correction
- Objective : ID
- Objective : Immersion
- Objective : LensNA
- Objective : Manufacturer
- Objective : NominalMagnification
- ObjectiveSettings : ID
- ObjectiveSettings : RefractiveIndex
- Pixels : BigEndian
- Pixels : DimensionOrder
- Pixels : ID
- Pixels : Interleaved
- Pixels : PhysicalSizeX
- Pixels : PhysicalSizeY
- Pixels : SignificantBits
- Pixels : SizeC
- Pixels : SizeT
- Pixels : SizeX
- Pixels : SizeY
- Pixels : SizeZ
- Pixels : Type
- Plane : DeltaT
- Plane : ExposureTime
- Plane : PositionX
- Plane : PositionY
- Plane : PositionZ
- Plane : TheC
- Plane : TheT
- Plane : TheZ
- Plate : ColumnNamingConvention
- Plate : Columns
- Plate : ID
- Plate : Name
- Plate : RowNamingConvention
- Plate : Rows
- Plate : WellOriginX
- Plate : WellOriginY
- PlateAcquisition : ID
- PlateAcquisition : MaximumFieldCount
- PlateAcquisition : WellSampleRef
- Well : Column
- Well : ID
- Well : Row
- WellSample : ID
- WellSample : ImageRef
- WellSample : Index
- WellSample : PositionX
- WellSample : PositionY
Total supported: 69
Total unknown or missing: 407