******************************************************************************* MetamorphReader ******************************************************************************* This page lists supported metadata fields for the Bio-Formats Metamorph STK format reader. These fields are from the :model_doc:`OME data model <>`. Bio-Formats standardizes each format's original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way. Of the 476 fields documented in the :doc:`metadata summary table </metadata-summary>`: * The file format itself supports 58 of them (12%). * Of those, Bio-Formats fully or partially converts 58 (100%). Supported fields =============================================================================== These fields are fully supported by the Bio-Formats Metamorph STK format reader: * :schema:`Channel : ID <OME-2016-06/ome_xsd.html#Channel_ID>` * :schema:`Channel : LightSourceSettingsID <OME-2016-06/ome_xsd.html#LightSourceSettings_ID>` * :schema:`Channel : LightSourceSettingsWavelength <OME-2016-06/ome_xsd.html#LightSourceSettings_Wavelength>` * :schema:`Channel : Name <OME-2016-06/ome_xsd.html#Channel_Name>` * :schema:`Channel : SamplesPerPixel <OME-2016-06/ome_xsd.html#Channel_SamplesPerPixel>` * :schema:`Detector : ID <OME-2016-06/ome_xsd.html#Detector_ID>` * :schema:`Detector : Type <OME-2016-06/ome_xsd.html#Detector_Type>` * :schema:`DetectorSettings : Binning <OME-2016-06/ome_xsd.html#DetectorSettings_Binning>` * :schema:`DetectorSettings : Gain <OME-2016-06/ome_xsd.html#DetectorSettings_Gain>` * :schema:`DetectorSettings : ID <OME-2016-06/ome_xsd.html#DetectorSettings_ID>` * :schema:`DetectorSettings : ReadOutRate <OME-2016-06/ome_xsd.html#DetectorSettings_ReadOutRate>` * :schema:`Image : AcquisitionDate <OME-2016-06/ome_xsd.html#Image_AcquisitionDate>` * :schema:`Image : Description <OME-2016-06/ome_xsd.html#Image_Description>` * :schema:`Image : ID <OME-2016-06/ome_xsd.html#Image_ID>` * :schema:`Image : InstrumentRef <OME-2016-06/ome_xsd.html#InstrumentRef_ID>` * :schema:`Image : Name <OME-2016-06/ome_xsd.html#Image_Name>` * :schema:`ImagingEnvironment : Temperature <OME-2016-06/ome_xsd.html#ImagingEnvironment_Temperature>` * :schema:`Instrument : ID <OME-2016-06/ome_xsd.html#Instrument_ID>` * :schema:`Laser : ID <OME-2016-06/ome_xsd.html#LightSource_ID>` * :schema:`Laser : LaserMedium <OME-2016-06/ome_xsd.html#Laser_LaserMedium>` * :schema:`Laser : Type <OME-2016-06/ome_xsd.html#Laser_Type>` * :schema:`Objective : ID <OME-2016-06/ome_xsd.html#Objective_ID>` * :schema:`Objective : LensNA <OME-2016-06/ome_xsd.html#Objective_LensNA>` * :schema:`ObjectiveSettings : ID <OME-2016-06/ome_xsd.html#ObjectiveSettings_ID>` * :schema:`ObjectiveSettings : RefractiveIndex <OME-2016-06/ome_xsd.html#ObjectiveSettings_RefractiveIndex>` * :schema:`Pixels : BigEndian <OME-2016-06/ome_xsd.html#Pixels_BigEndian>` * :schema:`Pixels : DimensionOrder <OME-2016-06/ome_xsd.html#Pixels_DimensionOrder>` * :schema:`Pixels : ID <OME-2016-06/ome_xsd.html#Pixels_ID>` * :schema:`Pixels : Interleaved <OME-2016-06/ome_xsd.html#Pixels_Interleaved>` * :schema:`Pixels : PhysicalSizeX <OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeX>` * :schema:`Pixels : PhysicalSizeY <OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeY>` * :schema:`Pixels : PhysicalSizeZ <OME-2016-06/ome_xsd.html#Pixels_PhysicalSizeZ>` * :schema:`Pixels : SignificantBits <OME-2016-06/ome_xsd.html#Pixels_SignificantBits>` * :schema:`Pixels : SizeC <OME-2016-06/ome_xsd.html#Pixels_SizeC>` * :schema:`Pixels : SizeT <OME-2016-06/ome_xsd.html#Pixels_SizeT>` * :schema:`Pixels : SizeX <OME-2016-06/ome_xsd.html#Pixels_SizeX>` * :schema:`Pixels : SizeY <OME-2016-06/ome_xsd.html#Pixels_SizeY>` * :schema:`Pixels : SizeZ <OME-2016-06/ome_xsd.html#Pixels_SizeZ>` * :schema:`Pixels : Type <OME-2016-06/ome_xsd.html#Pixels_Type>` * :schema:`Plane : DeltaT <OME-2016-06/ome_xsd.html#Plane_DeltaT>` * :schema:`Plane : ExposureTime <OME-2016-06/ome_xsd.html#Plane_ExposureTime>` * :schema:`Plane : PositionX <OME-2016-06/ome_xsd.html#Plane_PositionX>` * :schema:`Plane : PositionY <OME-2016-06/ome_xsd.html#Plane_PositionY>` * :schema:`Plane : PositionZ <OME-2016-06/ome_xsd.html#Plane_PositionZ>` * :schema:`Plane : TheC <OME-2016-06/ome_xsd.html#Plane_TheC>` * :schema:`Plane : TheT <OME-2016-06/ome_xsd.html#Plane_TheT>` * :schema:`Plane : TheZ <OME-2016-06/ome_xsd.html#Plane_TheZ>` * :schema:`Plate : ColumnNamingConvention <OME-2016-06/ome_xsd.html#Plate_ColumnNamingConvention>` * :schema:`Plate : Columns <OME-2016-06/ome_xsd.html#Plate_Columns>` * :schema:`Plate : ID <OME-2016-06/ome_xsd.html#Plate_ID>` * :schema:`Plate : RowNamingConvention <OME-2016-06/ome_xsd.html#Plate_RowNamingConvention>` * :schema:`Plate : Rows <OME-2016-06/ome_xsd.html#Plate_Rows>` * :schema:`Well : Column <OME-2016-06/ome_xsd.html#Well_Column>` * :schema:`Well : ID <OME-2016-06/ome_xsd.html#Well_ID>` * :schema:`Well : Row <OME-2016-06/ome_xsd.html#Well_Row>` * :schema:`WellSample : ID <OME-2016-06/ome_xsd.html#WellSample_ID>` * :schema:`WellSample : ImageRef <OME-2016-06/ome_xsd.html#ImageRef_ID>` * :schema:`WellSample : Index <OME-2016-06/ome_xsd.html#WellSample_Index>` **Total supported: 58** **Total unknown or missing: 418**