MicromanagerReader

This page lists supported metadata fields for the Bio-Formats Micro-Manager format reader.

These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.

Of the 476 fields documented in the metadata summary table:

• The file format itself supports 41 of them (8%).
• Of those, Bio-Formats fully or partially converts 41 (100%).

Supported fields

These fields are fully supported by the Bio-Formats Micro-Manager format reader:

• Channel : ID
• Channel : Name
• Channel : SamplesPerPixel
• Detector : ID
• Detector : Manufacturer
• Detector : Model
• Detector : SerialNumber
• Detector : Type
• DetectorSettings : Binning
• DetectorSettings : Gain
• DetectorSettings : ID
• DetectorSettings : Voltage
• Image : AcquisitionDate
• Image : Description
• Image : ID
• Image : InstrumentRef
• Image : Name
• ImagingEnvironment : Temperature
• Instrument : ID
• Pixels : BigEndian
• Pixels : DimensionOrder
• Pixels : ID
• Pixels : Interleaved
• Pixels : PhysicalSizeX
• Pixels : PhysicalSizeY
• Pixels : PhysicalSizeZ
• Pixels : SignificantBits
• Pixels : SizeC
• Pixels : SizeT
• Pixels : SizeX
• Pixels : SizeY
• Pixels : SizeZ
• Pixels : Type
• Plane : DeltaT
• Plane : ExposureTime
• Plane : PositionX
• Plane : PositionY
• Plane : PositionZ
• Plane : TheC
• Plane : TheT
• Plane : TheZ

Total supported: 41

Total unknown or missing: 435