ICSReader

This page lists supported metadata fields for the Bio-Formats Image Cytometry Standard format reader.

These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.

Of the 476 fields documented in the metadata summary table:

• The file format itself supports 72 of them (15%).
• Of those, Bio-Formats fully or partially converts 72 (100%).

Supported fields

These fields are fully supported by the Bio-Formats Image Cytometry Standard format reader:

• Channel : EmissionWavelength
• Channel : ExcitationWavelength
• Channel : ID
• Channel : Name
• Channel : PinholeSize
• Channel : SamplesPerPixel
• Detector : ID
• Detector : Manufacturer
• Detector : Model
• Detector : Type
• DetectorSettings : Gain
• DetectorSettings : ID
• Dichroic : ID
• Dichroic : Model
• Experiment : ID
• Experiment : Type
• Experimenter : ID
• Experimenter : LastName
• Filter : ID
• Filter : Model
• FilterSet : DichroicRef
• FilterSet : EmissionFilterRef
• FilterSet : ExcitationFilterRef
• FilterSet : ID
• FilterSet : Model
• Image : AcquisitionDate
• Image : Description
• Image : ID
• Image : InstrumentRef
• Image : Name
• Instrument : ID
• Laser : ID
• Laser : LaserMedium
• Laser : Manufacturer
• Laser : Model
• Laser : Power
• Laser : RepetitionRate
• Laser : Type
• Laser : Wavelength
• Microscope : Manufacturer
• Microscope : Model
• Objective : CalibratedMagnification
• Objective : Correction
• Objective : ID
• Objective : Immersion
• Objective : LensNA
• Objective : Model
• Objective : WorkingDistance
• ObjectiveSettings : ID
• Pixels : BigEndian
• Pixels : DimensionOrder
• Pixels : ID
• Pixels : Interleaved
• Pixels : PhysicalSizeX
• Pixels : PhysicalSizeY
• Pixels : PhysicalSizeZ
• Pixels : SignificantBits
• Pixels : SizeC
• Pixels : SizeT
• Pixels : SizeX
• Pixels : SizeY
• Pixels : SizeZ
• Pixels : TimeIncrement
• Pixels : Type
• Plane : DeltaT
• Plane : ExposureTime
• Plane : PositionX
• Plane : PositionY
• Plane : PositionZ
• Plane : TheC
• Plane : TheT
• Plane : TheZ

Total supported: 72

Total unknown or missing: 404