GatanReader

This page lists supported metadata fields for the Bio-Formats Gatan Digital Micrograph format reader.

These fields are from the OME data model. Bio-Formats standardizes each format’s original metadata to and from the OME data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-independent way.

Of the 476 fields documented in the metadata summary table:

• The file format itself supports 37 of them (7%).
• Of those, Bio-Formats fully or partially converts 37 (100%).

Supported fields

These fields are fully supported by the Bio-Formats Gatan Digital Micrograph format reader:

• Channel : AcquisitionMode
• Channel : ID
• Channel : SamplesPerPixel
• Detector : ID
• DetectorSettings : ID
• DetectorSettings : Voltage
• Image : AcquisitionDate
• Image : ID
• Image : InstrumentRef
• Image : Name
• Instrument : ID
• Objective : Correction
• Objective : ID
• Objective : Immersion
• Objective : NominalMagnification
• ObjectiveSettings : ID
• Pixels : BigEndian
• Pixels : DimensionOrder
• Pixels : ID
• Pixels : Interleaved
• Pixels : PhysicalSizeX
• Pixels : PhysicalSizeY
• Pixels : PhysicalSizeZ
• Pixels : SignificantBits
• Pixels : SizeC
• Pixels : SizeT
• Pixels : SizeX
• Pixels : SizeY
• Pixels : SizeZ
• Pixels : Type
• Plane : ExposureTime
• Plane : PositionX
• Plane : PositionY
• Plane : PositionZ
• Plane : TheC
• Plane : TheT
• Plane : TheZ

Total supported: 37

Total unknown or missing: 439