OMERO

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Feature List
Licensing

Index

Symbols | A | B | C | D | E | G | I | J | L | M | O | P | R | S | U | V | W

Symbols

--advanced-help
omero-import command line option
--all
omero-help command line option
--archived
omero-fs-images command line option
--check
omero-fs-sets command line option
--debug DEBUG
omero-import command line option
--depth DEPTH
omero-import command line option
--dry-run
command line option, [1]
--email EMAIL
omero-import command line option
--exclude
command line option, [1]
--extended
omero-fs-images command line option
omero-fs-sets command line option
--force-rewrite
omero-admin-start command line option
omero-admin-stop command line option
--foreground
omero-admin-start command line option
--groups
omero-fs-usage command line option
--include
command line option, [1]
--java-help
omero-import command line option
--limit <LIMIT>
omero-fs-images command line option
omero-fs-sets command line option
--list
omero-help command line option
--logs
omero-import command line option
--managed
omero-fs-repos command line option
--markers
setup.py-test command line option
--no-move
omero-fs-rename command line option
--offset <OFFSET>
omero-fs-images command line option
omero-fs-sets command line option
--order <{newest,oldest,prefix}>
omero-fs-images command line option
omero-fs-sets command line option
--ordered
command line option, [1]
--recursive
omero-help command line option
--repeat <number>
py.test command line option
--report
command line option, [1]
omero-fs-usage command line option
omero-import command line option
--size_only
omero-fs-usage command line option
--skip SKIP
omero-import command line option
--style <{plain,csv,sql}>
omero-fs-repos command line option
omero-fs-sets command line option
--style {plain,csv,sql}
omero-fs-images command line option
omero-fs-usage command line option
--sudo ADMINUSER
omero-login command line option
--units {K,M,G,T,P}
omero-fs-usage command line option
--upload
omero-import command line option
--wait WAIT
omero-fs-usage command line option
--with-transfer <WITH_TRANSFER [WITH_TRANSFER ...]>
omero-fs-sets command line option
--without-images
omero-fs-sets command line option
-f
omero-import command line option
-g GROUP, --group GROUP
omero-login command line option
-h, --help
omero-admin-start command line option
omero-admin-stop command line option
omero-fs-images command line option
omero-fs-rename command line option
omero-fs-repos command line option
omero-fs-sets command line option
omero-fs-usage command line option
omero-import command line option
py.test command line option
setup.py-test command line option
-k <string>
setup.py-test command line option
-k KEY, --key KEY
omero-login command line option
-m <marker>
setup.py-test command line option
-p PORT, --port PORT
omero-login command line option
-s
setup.py-test command line option
-s SERVER, --server SERVER
omero-login command line option
-t <test_path>, --test-path <test_path>
setup.py-test command line option
-T, --target TARGET
omero-import command line option
-u USER, --user USER
omero-login command line option
-w PASSWORD, --password PASSWORD
omero-login command line option

A

Action
addData() (omero.grid.Table method)
Administrator
AgentEvent
AgentEventListener
Annotate

B

broken

C

ch.qos.logback.core.Appender.error
CMAKE_INCLUDE_PATH, [1]
CMAKE_LIBRARY_PATH
columns (omero.grid.Data attribute)
command
omero-help command line option
command line option
--dry-run, [1]
--exclude, [1]
--include, [1]
--ordered, [1]
--report, [1]
CompletionHandler
connection
omero-login command line option
CXX
CXXFLAGS, [1]

D

Delete
DYLD_LIBRARY_PATH, [1]

E

Edit
environment variable
CMAKE_INCLUDE_PATH, [1]
CMAKE_LIBRARY_PATH
CXX
CXXFLAGS, [1]
DYLD_LIBRARY_PATH, [1]
GTEST_ROOT
ICE_CONFIG, [1], [2], [3], [4], [5], [6]
ICE_HOME, [1]
JAVA_OPTS
LD_LIBRARY_PATH, [1]
OMERO_CONFIG
OMERO_HOME, [1], [2], [3], [4], [5], [6], [7], [8]
OMERO_PREFIX, [1], [2], [3], [4]
OMERO_SESSIONDIR, [1], [2], [3], [4]
OMERO_SESSION_DIR, [1], [2]
OMERO_TMPDIR, [1], [2], [3], [4]
OMERO_USERDIR, [1], [2]
PATH, [1], [2], [3]
PYTHONPATH, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10]
SLICEPATH, [1], [2]
VERBOSE
EventBus
EventBusListener

G

getAllMetadata() (omero.grid.Table method)
getHeaders() (omero.grid.Table method)
getMetadata() (omero.grid.Table method)
getNumberOfRows() (omero.grid.Table method)
getWhereList() (omero.grid.Table method)
Group member
Group owner
GTEST_ROOT

I

Ice.IPv6
ICE_CONFIG, [1], [2], [3], [4], [5], [6]
ICE_HOME, [1]
initialize() (omero.grid.Table method)
intermittent

J

JAVA_OPTS
jvm.fileDescriptorCountRatio

L

lastModification (omero.grid.Data attribute)
LD_LIBRARY_PATH, [1]
long_running

M

ManualStrategy
Mix data
Move between groups

O

ome.io.nio.PixelsService.minmaxTimes
ome.io.nio.PixelsService.tileTimes`
ome.services.eventlogs.EventLogQueue.priorityCount
omero admin, [1]
cleanse
deploy, [1]
diagnostics, [1], [2], [3]
email
jvmcfg
start, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10]
stop, [1], [2], [3]
omero chgrp
omero config, [1], [2]
def, [1]
drop
edit
get, [1]
load
parse
set, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10]
set; Ice.Default.Host; 127.0.0.1
set; Ice.IPv6; 0
omero db
script, [1]
omero delete, [1]
omero fs
images
rename
repos, [1]
sets
usage
omero group
add, [1]
adduser
copyusers
list
removeuser
omero help
omero hql, [1]
omero ldap
create, [1]
setdn
omero node
NAME; stop
omero-slave; start
omero obj, [1], [2]
new
update
omero script
omero tag
create
createset
link
list
listsets
omero user
add, [1]
joingroup
leavegroup
list
omero web
config
omero-admin-start command line option
--force-rewrite
--foreground
-h, --help
omero-admin-stop command line option
--force-rewrite
-h, --help
omero-fs-images command line option
--archived
--extended
--limit <LIMIT>
--offset <OFFSET>
--order <{newest,oldest,prefix}>
--style {plain,csv,sql}
-h, --help
omero-fs-rename command line option
--no-move
-h, --help
omero-fs-repos command line option
--managed
--style <{plain,csv,sql}>
-h, --help
omero-fs-sets command line option
--check
--extended
--limit <LIMIT>
--offset <OFFSET>
--order <{newest,oldest,prefix}>
--style <{plain,csv,sql}>
--with-transfer <WITH_TRANSFER [WITH_TRANSFER ...]>
--without-images
-h, --help
omero-fs-usage command line option
--groups
--report
--size_only
--style {plain,csv,sql}
--units {K,M,G,T,P}
--wait WAIT
-h, --help
omero-help command line option
--all
--list
--recursive
command
omero-import command line option
--advanced-help
--debug DEBUG
--depth DEPTH
--email EMAIL
--java-help
--logs
--report
--skip SKIP
--upload
-T, --target TARGET
-f
-h, --help
omero-login command line option
--sudo ADMINUSER
-g GROUP, --group GROUP
-k KEY, --key KEY
-p PORT, --port PORT
-s SERVER, --server SERVER
-u USER, --user USER
-w PASSWORD, --password PASSWORD
connection
omero.checksum.supported
omero.client.download_as.max_size
omero.client.scripts_to_ignore
omero.client.ui.menu.dropdown.colleagues.enabled
omero.client.ui.menu.dropdown.colleagues.label
omero.client.ui.menu.dropdown.everyone.enabled
omero.client.ui.menu.dropdown.everyone.label
omero.client.ui.menu.dropdown.leaders.enabled
omero.client.ui.menu.dropdown.leaders.label
omero.client.ui.tree.orphans.description
omero.client.ui.tree.orphans.enabled
omero.client.ui.tree.orphans.name
omero.client.viewer.initial_zoom_level
omero.client.viewer.interpolate_pixels
omero.client.viewer.roi_limit
omero.client.web.host
omero.cluster.read_only
omero.cluster.redirector
omero.data.dir
omero.db.authority
omero.db.dialect
omero.db.driver
omero.db.host
omero.db.name
omero.db.pass
omero.db.patch
omero.db.poolsize
omero.db.port
omero.db.prepared_statement_cache_size
omero.db.profile
omero.db.sql_action_class
omero.db.statistics
omero.db.user
omero.db.version
omero.fs.repo.path
omero.fs.repo.path_rules
omero.grid.BoolColumn (built-in class)
omero.grid.Column (built-in class)
omero.grid.Data (built-in class)
omero.grid.DoubleArrayColumn (built-in class)
omero.grid.DoubleColumn (built-in class)
omero.grid.FileColumn (built-in class)
omero.grid.FloatArrayColumn (built-in class)
omero.grid.ImageColumn (built-in class)
omero.grid.LongArrayColumn (built-in class)
omero.grid.LongColumn (built-in class)
omero.grid.PlateColumn (built-in class)
omero.grid.registry_timeout
omero.grid.RoiColumn (built-in class)
omero.grid.StringColumn (built-in class)
omero.grid.Table (built-in class)
omero.grid.Tables (built-in class)
omero.grid.WellColumn (built-in class)
omero.jvmcfg.append
omero.jvmcfg.heap_dump
omero.jvmcfg.heap_size
omero.jvmcfg.max_system_memory
omero.jvmcfg.min_system_memory
omero.jvmcfg.percent
omero.jvmcfg.perm_gen
omero.jvmcfg.strategy
omero.jvmcfg.system_memory
omero.launcher.jython
omero.launcher.matlab
omero.launcher.python
omero.ldap.base
omero.ldap.config
omero.ldap.group_filter
omero.ldap.group_mapping
omero.ldap.new_user_group
omero.ldap.new_user_group_owner
omero.ldap.password
omero.ldap.referral
omero.ldap.sync_on_login
omero.ldap.urls
omero.ldap.user_filter
omero.ldap.user_mapping
omero.ldap.username
omero.mail.bean
omero.mail.config
omero.mail.from
omero.mail.host
omero.mail.password
omero.mail.port
omero.mail.smtp.auth
omero.mail.smtp.connectiontimeout
omero.mail.smtp.debug
omero.mail.smtp.socketFactory.class
omero.mail.smtp.socketFactory.fallback
omero.mail.smtp.socketFactory.port
omero.mail.smtp.starttls.enable
omero.mail.smtp.timeout
omero.mail.transport.protocol
omero.mail.username
omero.managed.dir
omero.metrics.bean
omero.metrics.graphite
omero.metrics.slf4j_minutes
omero.pixeldata.backoff
omero.pixeldata.batch
omero.pixeldata.cron
omero.pixeldata.dispose
omero.pixeldata.event_log_loader
omero.pixeldata.max_plane_height
omero.pixeldata.max_plane_width
omero.pixeldata.memoizer_wait
omero.pixeldata.repetitions
omero.pixeldata.threads
omero.pixeldata.tile_height
omero.pixeldata.tile_sizes_bean
omero.pixeldata.tile_width
omero.policy.bean
omero.policy.binary_access
omero.ports.prefix
omero.ports.registry
omero.ports.ssl
omero.ports.tcp
omero.process.jython
omero.process.matlab
omero.process.python
omero.scripts.cache.cron
omero.scripts.cache.spec
omero.scripts.timeout
omero.search.analyzer
omero.search.batch
omero.search.bridges
omero.search.cron
omero.search.event_log_loader
omero.search.excludes
omero.search.include_actions
omero.search.include_types
omero.search.locking_strategy
omero.search.max_file_size
omero.search.max_partition_size
omero.search.maxclause
omero.search.merge_factor
omero.search.ram_buffer_size
omero.search.repetitions
omero.search.reporting_loops
omero.security.chmod_strategy
omero.security.filter.bitand
omero.security.keyStore
omero.security.keyStorePassword
omero.security.login_failure_throttle_count
omero.security.login_failure_throttle_time
omero.security.password_provider
omero.security.password_required
omero.security.trustStore
omero.security.trustStorePassword
omero.sessions.maximum
omero.sessions.sync_force
omero.sessions.sync_interval
omero.sessions.timeout
omero.threads.cancel_timeout
omero.threads.idle_timeout
omero.threads.max_threads
omero.threads.min_threads
omero.throttling.method_time.error
omero.throttling.method_time.error.indexer
omero.throttling.method_time.warn
omero.throttling.method_time.warn.indexer
omero.throttling.objects_read_interval
omero.throttling.objects_written_interval
omero.throttling.servants_per_session
omero.web.admins
omero.web.application_server
omero.web.application_server.host
omero.web.application_server.max_requests
omero.web.application_server.port
omero.web.apps
omero.web.caches
omero.web.chunk_size
omero.web.databases
omero.web.debug
omero.web.index_template
omero.web.logdir
omero.web.login_logo
omero.web.login_redirect
omero.web.login_view
omero.web.page_size
omero.web.ping_interval
omero.web.pipeline_css_compressor
omero.web.pipeline_js_compressor
omero.web.pipeline_staticfile_storage
omero.web.prefix
omero.web.public.cache.enabled
omero.web.public.cache.key
omero.web.public.cache.timeout
omero.web.public.enabled
omero.web.public.password
omero.web.public.server_id
omero.web.public.url_filter
omero.web.public.user
omero.web.secret_key
omero.web.secure_proxy_ssl_header
omero.web.server_list
omero.web.session_cookie_age
omero.web.session_cookie_domain
omero.web.session_cookie_name
omero.web.session_engine
omero.web.session_expire_at_browser_close
omero.web.static_root
omero.web.static_url
omero.web.staticfile_dirs
omero.web.template_dirs
omero.web.ui.center_plugins
omero.web.ui.right_plugins
omero.web.ui.top_links
omero.web.use_x_forwarded_host
omero.web.viewer.view
omero.web.webgateway_cache
omero.web.wsgi_args
omero.web.wsgi_timeout
omero.web.wsgi_workers
OMERO_CONFIG
OMERO_HOME, [1], [2], [3], [4], [5], [6], [7], [8]
OMERO_PREFIX, [1], [2], [3], [4]
OMERO_SESSION_DIR, [1], [2]
OMERO_SESSIONDIR, [1], [2], [3], [4]
OMERO_TMPDIR, [1], [2], [3], [4]
OMERO_USERDIR, [1], [2]

P

PATH, [1], [2], [3]
PercentStrategy
Private
py.test command line option
--repeat <number>
-h, --help
PYTHONPATH, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10]

R

read() (omero.grid.Table method)
Read-annotate
Read-only
Read-write
readCoordinates() (omero.grid.Table method)
Remove annotations
Render
RequestEvent
ResponseEvent
rowNumbers (omero.grid.Data attribute)

S

setAllMetadata() (omero.grid.Table method)
setMetadata() (omero.grid.Table method)
setup.py-test command line option
--markers
-h, --help
-k <string>
-m <marker>
-s
-t <test_path>, --test-path <test_path>
slice() (omero.grid.Table method)
SLICEPATH, [1], [2]
StateChangeEvent

U

update() (omero.grid.Table method)

V

values (omero.grid.DoubleColumn attribute)
VERBOSE
View

W

webclient
webgateway